Citrus Sinensis ID: 007645
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 595 | 2.2.26 [Sep-21-2011] | |||||||
| Q93W95 | 600 | Probable methyltransferas | yes | no | 1.0 | 0.991 | 0.822 | 0.0 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.862 | 0.802 | 0.458 | 1e-141 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.868 | 0.816 | 0.450 | 1e-139 | |
| Q9ZPH9 | 633 | Probable methyltransferas | no | no | 0.974 | 0.916 | 0.419 | 1e-139 | |
| B9DFI7 | 616 | Probable methyltransferas | no | no | 0.868 | 0.839 | 0.468 | 1e-138 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.961 | 0.921 | 0.430 | 1e-136 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.853 | 0.805 | 0.444 | 1e-135 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.890 | 0.883 | 0.426 | 1e-134 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.843 | 0.832 | 0.437 | 1e-133 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.842 | 0.819 | 0.44 | 1e-125 |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/597 (82%), Positives = 550/597 (92%), Gaps = 2/597 (0%)
Query: 1 MGHLNLPASKR-NARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMST-S 58
MGH+NLPASKR N RQW+LLDIV+A FFG+VLLFF+L+FTPLGDS+AASGRQ LL+ST S
Sbjct: 1 MGHVNLPASKRGNPRQWRLLDIVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTAS 60
Query: 59 DPRQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQ 118
DPRQRQRLV L+EAG H++PIE CPA++V HMPCEDPRRNSQLSREMNFYRERHCPLP++
Sbjct: 61 DPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEE 120
Query: 119 TPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTM 178
TPLCLIPPP GYKIPVPWPESL KIWHANMPYNKIADRKGHQGWMK G YFTFPGGGTM
Sbjct: 121 TPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTM 180
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI 238
F GA +YI+KL QYIP+ GGTLRTALDMGCGVASFGG++LS+ IL LSFAPRDSHK+QI
Sbjct: 181 FPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQI 240
Query: 239 QFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 298
QFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPFTAYNATY IEVDRLLRPGGYL
Sbjct: 241 QFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYL 300
Query: 299 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELC 358
VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVG+SCL +QNEFGLELC
Sbjct: 301 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGDSCLPSQNEFGLELC 360
Query: 359 DESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEAD 418
DES P+ AWYFKLK+CV+ SSVKGE+A+GTI KWP+RLTK PSRA+VMKNG DVFEAD
Sbjct: 361 DESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPERLTKVPSRAIVMKNGLDVFEAD 420
Query: 419 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTL 478
+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA L SDPVWVMNV+PARK TL
Sbjct: 421 ARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPLTL 480
Query: 479 SVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRM 538
VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK S+K+ CSLVDLMVEMDR+
Sbjct: 481 DVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRI 540
Query: 539 LRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S+GREKIL+ATKSLWKLPS
Sbjct: 541 LRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 502 bits (1293), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/539 (45%), Positives = 335/539 (62%), Gaps = 26/539 (4%)
Query: 76 VKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVP 135
VK E C ++ PCED R + R M YRERHCP D+ CLIPPP YKIP
Sbjct: 107 VKYFEPCDMSLSEYTPCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFK 166
Query: 136 WPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIP 195
WP+S W+ N+P+ +++ K Q W++ G F FPGGGTMF GAD YID + + IP
Sbjct: 167 WPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIP 226
Query: 196 ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT 255
+T G +RTA+D GCGVASFG +L +I+ +SFAPRD+H+AQ+QFALERG+PA + ++G+
Sbjct: 227 LTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGS 286
Query: 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA 315
RRLP+PA +FD+ HCSRCLIP+ + YL EVDR+LRPGGY ++SGPP+ W K K W
Sbjct: 287 RRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWE 346
Query: 316 -----------DLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLE--LCDESD 362
++ AR+LC++ + G+ IW+KP+ + LC +SD
Sbjct: 347 RSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSD 406
Query: 363 DPNYAWYFKLKKCVS--GTSSVKGEYAVGTIPKWPQRLTKAPSRAL---VMKNGYDVFEA 417
P++AWY L+ CV+ ++ E+A G + WP R P R + + + F
Sbjct: 407 LPDFAWYKDLESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFRE 466
Query: 418 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSS 476
D+ W+ R++YYK + +L RNIMDMNA+ GGFAAA+ P WVMNVVP +
Sbjct: 467 DNEVWKERISYYKQIMP-ELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQ 525
Query: 477 TLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMD 536
TL VI++RG IG Y DWCE FSTYPRTYDLIH G+ S+ +N C + +++EMD
Sbjct: 526 TLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIY------ENRCDVTLILLEMD 579
Query: 537 RMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
R+LRPEGTVV RD+ E++ K+ I N +RW + + D E G EKIL+A KS W PS
Sbjct: 580 RILRPEGTVVFRDTVEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 496 bits (1277), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/544 (45%), Positives = 340/544 (62%), Gaps = 27/544 (4%)
Query: 67 VALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPP 126
+ L E +K E C ++ PCED +R + R M YRERHCP+ D+ CLIPP
Sbjct: 81 IELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPVKDELLYCLIPP 140
Query: 127 PRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKY 186
P YKIP WP+S W+ N+P+ +++ K Q W++ G F FPGGGTMF GAD Y
Sbjct: 141 PPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGGGTMFPRGADAY 200
Query: 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI 246
ID + + IP+T G +RTA+D GCGVASFG +L +I+ +SFAPRD+H+AQ+QFALERG+
Sbjct: 201 IDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFALERGV 260
Query: 247 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 306
PA + ++G+RRLP+PA +FD+ HCSRCLIP+ + YL+EVDR+LRPGGY ++SGPP+
Sbjct: 261 PAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVDRVLRPGGYWILSGPPIN 320
Query: 307 WPKQ-----------DKEWADLQAVARALCYELIAVDGNTVIWKKPVG--ESCLSNQNEF 353
W + KE ++ VA++LC++ + G+ IW+KP+ E QN
Sbjct: 321 WKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNHIECKKLKQNNK 380
Query: 354 GLELCDESDDPNYAWYFKLKKCVSGTSSVKG--EYAVGTIPKWPQRLTKAPSRAL---VM 408
+C SD+ + AWY L+ C++ + A G + WP R P R + +
Sbjct: 381 SPPICS-SDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFAVPPRIIRGTIP 439
Query: 409 KNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMN 468
+ + F D+ W+ R+A+YK + +L RNIMDMNAF GGFAA++ P WVMN
Sbjct: 440 EMNAEKFREDNEVWKERIAHYKKIVP-ELSHGRFRNIMDMNAFLGGFAASMLKYPSWVMN 498
Query: 469 VVPAR-KSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCS 527
VVP + TL VIY+RGLIG Y DWCE FSTYPRTYD+IH G+ SL ++ C
Sbjct: 499 VVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLY------EHRCD 552
Query: 528 LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT 587
L +++EMDR+LRPEGTVV+RD+ E ++KV +I ++W + + D E G EKILVA
Sbjct: 553 LTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKILVAV 612
Query: 588 KSLW 591
K+ W
Sbjct: 613 KTYW 616
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 494 bits (1272), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/632 (41%), Positives = 362/632 (57%), Gaps = 52/632 (8%)
Query: 1 MGHLNLPASKRNARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASG-RQALLMSTSD 59
+ L+L A + N + L+ I+ TF+ F+ V+ G ++ S L S
Sbjct: 10 LSKLSLRAKQTNLYRVILIAILCVTFY------FVGVWQHSGRGISRSSISNHELTSVPC 63
Query: 60 PRQRQRLVALIEAGHHVKP-------------IESCPADSVDHMPCEDPRRNSQLSREMN 106
Q L A H P I SC + ++ PCE R+ RE
Sbjct: 64 TFPHQTTPILNFASRHTAPDLPPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERL 123
Query: 107 FYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKES 166
YRERHCP + C IP P GY +P WPES W AN+P+ ++ K +Q W++
Sbjct: 124 IYRERHCPEKHEIVRCRIPAPYGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYE 183
Query: 167 GPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTL 226
F FPGGGTMF GAD YID++ + I + G++RTA+D GCGVASFG ++S NI+T+
Sbjct: 184 KDRFLFPGGGTMFPRGADAYIDEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTM 243
Query: 227 SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLI 286
SFAPRD+H+AQ+QFALERG+PA + +L + RLPFPA +FDI HCSRCLIP+ YN TYLI
Sbjct: 244 SFAPRDTHEAQVQFALERGVPAIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLI 303
Query: 287 EVDRLLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCYELIAVDGNT 335
EVDR+LRPGGY ++SGPP+ W + K W + ++ VAR+LC+ + +
Sbjct: 304 EVDRVLRPGGYWILSGPPINWQRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQREDL 363
Query: 336 VIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKG----EYAVGT 390
+W+KP C N+ G PN WY KL+ C++ V G E A G
Sbjct: 364 AVWQKPTNHVHCKRNRIALGRPPFCHRTLPNQGWYTKLETCLTPLPEVTGSEIKEVAGGQ 423
Query: 391 IPKWPQRLTKAPSRALVMKNG------YDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRN 444
+ +WP+RL P R +K+G D F +++ +W+RRV+YYK T RN
Sbjct: 424 LARWPERLNALPPR---IKSGSLEGITEDEFVSNTEKWQRRVSYYKKYDQQLAETGRYRN 480
Query: 445 IMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRT 503
+DMNA GGFA+AL DPVWVMNVVP S +TL VIY+RGLIG Y +WCE STYPRT
Sbjct: 481 FLDMNAHLGGFASALVDDPVWVMNVVPVEASVNTLGVIYERGLIGTYQNWCEAMSTYPRT 540
Query: 504 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANT 563
YD IH + SL K+ C + D+++EMDR+LRP+G+V++RD +V+ KV +I +
Sbjct: 541 YDFIHADSVFSLY------KDRCDMEDILLEMDRILRPKGSVIIRDDIDVLTKVKKITDA 594
Query: 564 VRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
++W + D E G REKIL K W P+
Sbjct: 595 MQWEGRIGDHENGPLEREKILFLVKEYWTAPA 626
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 493 bits (1269), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/544 (46%), Positives = 338/544 (62%), Gaps = 27/544 (4%)
Query: 66 LVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIP 125
LV EA VK E C D+ PC+D RR R+ YRERHC ++ CLIP
Sbjct: 74 LVGASEAAK-VKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCAPENEKLHCLIP 132
Query: 126 PPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADK 185
P+GY P WP+S + +AN PY + K Q W++ G F FPGGGT F GADK
Sbjct: 133 APKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQGADK 192
Query: 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG 245
YID+L IP+ GT+RTALD GCGVAS+G + S N+ +SFAPRDSH+AQ+QFALERG
Sbjct: 193 YIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFALERG 252
Query: 246 IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305
+PA + +LGT +LP+P +FD+ HCSRCLIP+ A + YL+EVDR+LRPGGY ++SGPP+
Sbjct: 253 VPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILSGPPI 312
Query: 306 QW---------PKQD--KEWADLQAVARALCYELIAVDGNTVIWKKPVG-ESCLSNQNEF 353
W PK+D +E ++ A+ LC+E G IW+K V E+C S Q++
Sbjct: 313 NWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEACRSRQDDP 372
Query: 354 GLELCDESDDPNYAWYFKLKKCVS--GTSSVKGEYAVGTIPKWPQRLTKAPSR---ALVM 408
C ++DD + WY K++ C++ +S E A G + +P RL P R +
Sbjct: 373 RANFC-KTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISSGSIS 431
Query: 409 KNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMN 468
D +E D+R+W++ V YK +N L T RNIMDMNA FGGFAAAL S +WVMN
Sbjct: 432 GVTVDAYEDDNRQWKKHVKAYKR-INSLLDTGRYRNIMDMNAGFGGFAAALESQKLWVMN 490
Query: 469 VVPA-RKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCS 527
VVP + + L V+Y+RGLIG+YHDWCE FSTYPRTYDLIH + + SL KN C+
Sbjct: 491 VVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLY------KNKCN 544
Query: 528 LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT 587
D+++EMDR+LRPEG V++RD + + KV RI +RW A + D E G EK+L+A
Sbjct: 545 ADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIAV 604
Query: 588 KSLW 591
K W
Sbjct: 605 KQYW 608
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 486 bits (1250), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/613 (43%), Positives = 361/613 (58%), Gaps = 41/613 (6%)
Query: 5 NLPASKRNARQWKLLDIVSATFFGLVLLFFLL-----VFTPLGDSLAAS-GRQALLMSTS 58
N P + R+ LL +V GL F+LL GDS+A +QA
Sbjct: 6 NPPGNNRSRSTLSLLVVV-----GLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIV 60
Query: 59 DPRQRQRLVALIEAGHHVKP----IESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCP 114
+ ++ H P + C D+ PC++ R + RE YRERHCP
Sbjct: 61 TDLDFEPHHNTVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCP 120
Query: 115 LPDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPG 174
++ CL+P P+GY P PWP+S + +AN P+ + K Q W++ G F FPG
Sbjct: 121 PDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPG 180
Query: 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSH 234
GGTMF GAD YI++L IPI G++RTALD GCGVAS+G ML N+LT+SFAPRD+H
Sbjct: 181 GGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNH 240
Query: 235 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 294
+AQ+QFALERG+PA +A+LG+ LP+PA +FD+ CSRCLIP+TA TYL+EVDR+LRP
Sbjct: 241 EAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRP 300
Query: 295 GGYLVISGPPVQWPKQDKEW----ADLQA-------VARALCYELIAVDGNTVIWKKPVG 343
GGY V+SGPP+ W K W A+L A +A +LC+E G+ I++K +
Sbjct: 301 GGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKIN 360
Query: 344 ESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAV--GTIPKWPQRLTKA 401
+ S ++ C D + WY +++ CV+ V E V G + K+P+RL
Sbjct: 361 DR--SCDRSTPVDTCKRKDTDD-VWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAV 417
Query: 402 P---SRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAA 458
P S+ L+ + ++ D W++RV YK +N +G+ RN+MDMNA GGFAAA
Sbjct: 418 PPSISKGLINGVDEESYQEDINLWKKRVTGYKR-INRLIGSTRYRNVMDMNAGLGGFAAA 476
Query: 459 LTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518
L S WVMNV+P +TLSV+Y+RGLIG+YHDWCE FSTYPRTYD IH SG+ SL
Sbjct: 477 LESPKSWVMNVIPTINKNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLY-- 534
Query: 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSN 578
++SC L D+++E DR+LRPEG V+ RD +V++ V +I + +RW + D E G
Sbjct: 535 ----QHSCKLEDILLETDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPL 590
Query: 579 GREKILVATKSLW 591
EKILVATK W
Sbjct: 591 VPEKILVATKQYW 603
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 239/538 (44%), Positives = 329/538 (61%), Gaps = 30/538 (5%)
Query: 81 SCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESL 140
SC A +H PCED +R+ + SRE YR+RHCP ++ C IP P GYK P WP S
Sbjct: 89 SCAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPEREEILKCRIPAPYGYKTPFRWPASR 148
Query: 141 SKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGT 200
W AN+P+ ++ K +Q W++ F FPGGGTMF GAD YID + + I ++ G+
Sbjct: 149 DVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGGTMFPRGADAYIDDIGRLIDLSDGS 208
Query: 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260
+RTA+D GCGVASFG +LS NI T+SFAPRD+H+AQ+QFALERG+PA + ++ T RLP+
Sbjct: 209 IRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFALERGVPAMIGIMATIRLPY 268
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW------ 314
P+ +FD+ HCSRCLIP+ + YL+EVDR+LRPGGY ++SGPP+ W K+ K W
Sbjct: 269 PSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRPGGYWILSGPPINWQKRWKGWERTMDD 328
Query: 315 -----ADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEF--GLELCDESDDPNYA 367
++ VAR+LC++ + + IW+KP E E C DP+ A
Sbjct: 329 LNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFNHIDCKKTREVLKNPEFCRHDQDPDMA 388
Query: 368 WYFKLKKCVSGTSSVKG-----EYAVGTIPKWPQRLTKAPSR---ALVMKNGYDVFEADS 419
WY K+ C++ V A G + KWP RL P R + + + F ++
Sbjct: 389 WYTKMDSCLTPLPEVDDAEDLKTVAGGKVEKWPARLNAIPPRVNKGALEEITPEAFLENT 448
Query: 420 RRWRRRVAYYKNTLNVKLG-TPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSST 477
+ W++RV+YYK L+ +LG T RN++DMNA+ GGFAAAL DPVWVMNVVP K +T
Sbjct: 449 KLWKQRVSYYKK-LDYQLGETGRYRNLVDMNAYLGGFAAALADDPVWVMNVVPVEAKLNT 507
Query: 478 LSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDR 537
L VIY+RGLIG Y +WCE STYPRTYD IH + +L + C ++++EMDR
Sbjct: 508 LGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFTLY------QGQCEPEEILLEMDR 561
Query: 538 MLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
+LRP G V++RD +V+ KV + + W + D E G + REKI A K W +P+
Sbjct: 562 ILRPGGGVIIRDDVDVLIKVKELTKGLEWEGRIADHEKGPHEREKIYYAVKQYWTVPA 619
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/556 (42%), Positives = 339/556 (60%), Gaps = 26/556 (4%)
Query: 54 LMSTSDPRQRQRLVALIEAGHHVKPIE--SCPADSVDHMPCEDPRRNSQLSREMNFYRER 111
++ SD + + ++ VK + C +D D+ PC DPR+ + + ER
Sbjct: 43 IIEVSDVAKAESSSLDVDDSLQVKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMER 102
Query: 112 HCPLPDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFT 171
HCP CL+PPP GYK P+ WP+S + W+ N+PY+ I +K +Q W+++ G F
Sbjct: 103 HCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFI 162
Query: 172 FPGGGTMFADGADKYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAP 230
FPGGGTMF G Y+D ++ IP + GT+RTA+D GCGVAS+GG +L ILT+S AP
Sbjct: 163 FPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAP 222
Query: 231 RDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR 290
RD+H+AQ+QFALERGIPA + ++ T+RLPFP+ SFD+ HCSRCLIP+T + YL+EV R
Sbjct: 223 RDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHR 282
Query: 291 LLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCYELIAVDGNTVIWK 339
+LRPGG+ V+SGPPV + + K W LQ + ++C+++ A + +W+
Sbjct: 283 ILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQ 342
Query: 340 KPVGESC---LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQ 396
K C LSN + CD+S +P+ AWY L+ CV S + + + PKWP+
Sbjct: 343 KSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDLESTPKWPE 402
Query: 397 RLTKAPSRALVMKNGY-DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGF 455
RL P R + G +VF+ D +W+ R +YK L +G+ IRN+MDMN +GG
Sbjct: 403 RLHTTPERISDVPGGNGNVFKHDDSKWKTRAKHYKKLLPA-IGSDKIRNVMDMNTAYGGL 461
Query: 456 AAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515
AAAL +DP+WVMNVV + ++TL V++DRGLIG YHDWCE FSTYPRTYDL+HV G+ +
Sbjct: 462 AAALVNDPLWVMNVVSSYAANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFT- 520
Query: 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP 575
S C + +M+EMDR+LRP G ++R+S D ++ +A +RW+ E
Sbjct: 521 -----SESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQTES 575
Query: 576 GSNGREKILVATKSLW 591
S EK+L+ K LW
Sbjct: 576 AS-ANEKLLICQKKLW 590
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 475 bits (1223), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/526 (43%), Positives = 335/526 (63%), Gaps = 24/526 (4%)
Query: 82 CPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLS 141
C ++ D+ PC DP+R + + ERHCP + CLIPPP GYK P+ WP+S
Sbjct: 79 CGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSRE 138
Query: 142 KIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIP-ITGGT 200
+ W+ N+PY+ I +K +Q W+K+ G F FPGGGTMF G Y+D ++ IP + GT
Sbjct: 139 QCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGT 198
Query: 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260
+RTA+D GCGVAS+GG +L IL+LS APRD+H+AQ+QFALERGIPA + ++ T+RLPF
Sbjct: 199 VRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPF 258
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------- 309
P+ +FD+ HCSRCLIP+T + YL+E+ R++RPGG+ V+SGPPV + +
Sbjct: 259 PSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMED 318
Query: 310 QDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESC---LSNQNEFGLELCDESDDPNY 366
Q ++ LQ++ ++C++ A + +W+K +SC ++ E CD+S +P+
Sbjct: 319 QKSDYNKLQSLLTSMCFKKYAQKDDIAVWQKLSDKSCYDKIAKNMEAYPPKCDDSIEPDS 378
Query: 367 AWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGY-DVFEADSRRWRRR 425
AWY L+ CV + + +G+IPKWP+RL AP R + G + + D +W+ R
Sbjct: 379 AWYTPLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHGGSANSLKHDDGKWKNR 438
Query: 426 VAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRG 485
V +YK L LGT IRN+MDMN +GGF+AAL DP+WVMNVV + +++L V++DRG
Sbjct: 439 VKHYKKVLPA-LGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFDRG 497
Query: 486 LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV 545
LIG YHDWCE FSTYPRTYDL+H+ + +L + C + +++EMDR+LRP G V
Sbjct: 498 LIGTYHDWCEAFSTYPRTYDLLHLDSLFTL------ESHRCEMKYILLEMDRILRPSGYV 551
Query: 546 VVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLW 591
++R+S +D ++ +A +RW+ + E EKILV K LW
Sbjct: 552 IIRESSYFMDAITTLAKGIRWSCRREETEYAVKS-EKILVCQKKLW 596
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/525 (44%), Positives = 315/525 (60%), Gaps = 24/525 (4%)
Query: 82 CPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPL-CLIPPPRGYKIPVPWPESL 140
CP + +++PC DP Q S E ++ RERHCP Q CL+P P GYK P PWPES
Sbjct: 94 CPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPWPESR 153
Query: 141 SKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGT 200
W N+P+ ++A+ K Q W++ G F FPGGGT F G Y+D + +P+ G+
Sbjct: 154 KYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPLASGS 213
Query: 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260
+RT LD+GCGVASFG +L+ ILT+S APRD H+AQ+QFALERG+PA + +L T +LP+
Sbjct: 214 IRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPY 273
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP----VQWPKQDKEWAD 316
P+ SFD+VHCSRCL+ +T+Y+ YL+EVDR+LRP GY V+SGPP V++ Q ++ +
Sbjct: 274 PSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKE 333
Query: 317 LQA-------VARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDESDDPNYAW 368
LQ V R LC+E IA VIW+KP C S DP+ AW
Sbjct: 334 LQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPDAAW 393
Query: 369 YFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDV--FEADSRRWRRRV 426
Y +++ C++ V + WP+RL P G + F+AD+ W+RRV
Sbjct: 394 YKEMEPCITPLPDVNDTNKT-VLKNWPERLNHVPRMKTGSIQGTTIAGFKADTNLWQRRV 452
Query: 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDRG 485
YY L RN++DMNA GGFAAAL P+WVMNVVP K +TL V+YDRG
Sbjct: 453 LYYDTKFKF-LSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDRG 511
Query: 486 LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV 545
LIG Y +WCE STYPRTYDLIH +G+ SL + C +VD+++EM R+LRPEG V
Sbjct: 512 LIGTYMNWCEALSTYPRTYDLIHANGVFSLY------LDKCDIVDILLEMQRILRPEGAV 565
Query: 546 VVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSL 590
++RD +V+ KV I N +RW ++ ++ IL+ S+
Sbjct: 566 IIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIVDNSI 610
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 595 | ||||||
| 18411430 | 600 | putative methyltransferase PMT13 [Arabid | 1.0 | 0.991 | 0.822 | 0.0 | |
| 225453730 | 597 | PREDICTED: probable methyltransferase PM | 0.998 | 0.994 | 0.828 | 0.0 | |
| 297810097 | 602 | hypothetical protein ARALYDRAFT_490495 [ | 1.0 | 0.988 | 0.821 | 0.0 | |
| 224130116 | 594 | predicted protein [Populus trichocarpa] | 0.996 | 0.998 | 0.831 | 0.0 | |
| 449432183 | 593 | PREDICTED: probable methyltransferase PM | 0.996 | 1.0 | 0.819 | 0.0 | |
| 356520463 | 594 | PREDICTED: probable methyltransferase PM | 0.993 | 0.994 | 0.774 | 0.0 | |
| 4325338 | 590 | F15P23.2 gene product [Arabidopsis thali | 0.946 | 0.954 | 0.751 | 0.0 | |
| 356568320 | 596 | PREDICTED: probable methyltransferase PM | 0.969 | 0.968 | 0.796 | 0.0 | |
| 356505029 | 597 | PREDICTED: probable methyltransferase PM | 0.993 | 0.989 | 0.772 | 0.0 | |
| 356532064 | 597 | PREDICTED: probable methyltransferase PM | 0.969 | 0.966 | 0.784 | 0.0 |
| >gi|18411430|ref|NP_567184.1| putative methyltransferase PMT13 [Arabidopsis thaliana] gi|75163241|sp|Q93W95.1|PMTD_ARATH RecName: Full=Probable methyltransferase PMT13 gi|16648931|gb|AAL24317.1| Unknown protein [Arabidopsis thaliana] gi|16649087|gb|AAL24395.1| Unknown protein [Arabidopsis thaliana] gi|23197886|gb|AAN15470.1| Unknown protein [Arabidopsis thaliana] gi|30725428|gb|AAP37736.1| At4g00740 [Arabidopsis thaliana] gi|332656528|gb|AEE81928.1| putative methyltransferase PMT13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1055 bits (2727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/597 (82%), Positives = 550/597 (92%), Gaps = 2/597 (0%)
Query: 1 MGHLNLPASKR-NARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMST-S 58
MGH+NLPASKR N RQW+LLDIV+A FFG+VLLFF+L+FTPLGDS+AASGRQ LL+ST S
Sbjct: 1 MGHVNLPASKRGNPRQWRLLDIVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTAS 60
Query: 59 DPRQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQ 118
DPRQRQRLV L+EAG H++PIE CPA++V HMPCEDPRRNSQLSREMNFYRERHCPLP++
Sbjct: 61 DPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEE 120
Query: 119 TPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTM 178
TPLCLIPPP GYKIPVPWPESL KIWHANMPYNKIADRKGHQGWMK G YFTFPGGGTM
Sbjct: 121 TPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTM 180
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI 238
F GA +YI+KL QYIP+ GGTLRTALDMGCGVASFGG++LS+ IL LSFAPRDSHK+QI
Sbjct: 181 FPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQI 240
Query: 239 QFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 298
QFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPFTAYNATY IEVDRLLRPGGYL
Sbjct: 241 QFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYL 300
Query: 299 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELC 358
VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVG+SCL +QNEFGLELC
Sbjct: 301 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGDSCLPSQNEFGLELC 360
Query: 359 DESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEAD 418
DES P+ AWYFKLK+CV+ SSVKGE+A+GTI KWP+RLTK PSRA+VMKNG DVFEAD
Sbjct: 361 DESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPERLTKVPSRAIVMKNGLDVFEAD 420
Query: 419 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTL 478
+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA L SDPVWVMNV+PARK TL
Sbjct: 421 ARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPLTL 480
Query: 479 SVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRM 538
VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK S+K+ CSLVDLMVEMDR+
Sbjct: 481 DVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRI 540
Query: 539 LRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S+GREKIL+ATKSLWKLPS
Sbjct: 541 LRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453730|ref|XP_002272714.1| PREDICTED: probable methyltransferase PMT13 [Vitis vinifera] gi|296089064|emb|CBI38767.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1051 bits (2718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/595 (82%), Positives = 541/595 (90%), Gaps = 1/595 (0%)
Query: 1 MGHLNLPASKRNARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTSDP 60
MGHLNLP+SKRNARQ++LLD+V+A+FFG+V++FFLLVFTPLGDSLAASGRQALL+ST+DP
Sbjct: 1 MGHLNLPSSKRNARQYRLLDLVTASFFGIVIIFFLLVFTPLGDSLAASGRQALLLSTADP 60
Query: 61 RQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTP 120
RQRQRLVAL+EAG + IE+CPA+ VDHMPCEDPRRNSQLSREMNFYRER CPLP +TP
Sbjct: 61 RQRQRLVALVEAGQQ-QAIEACPAEEVDHMPCEDPRRNSQLSREMNFYRERQCPLPAETP 119
Query: 121 LCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFA 180
LCLIPPP GY IPV WP+SL KIWH+NMP+NKIADRKGHQGWMKE G YF FPGGGTMF
Sbjct: 120 LCLIPPPDGYHIPVRWPDSLHKIWHSNMPHNKIADRKGHQGWMKEEGMYFIFPGGGTMFP 179
Query: 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF 240
DGA++YI+KL QYIP+TGG LRTALDMGCGVASFGG +L++ ILT SFAPRDSHK+QIQF
Sbjct: 180 DGAEQYIEKLSQYIPLTGGVLRTALDMGCGVASFGGYLLNQGILTFSFAPRDSHKSQIQF 239
Query: 241 ALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300
ALERGIPA VAMLGTRRLPFPAFSFD+VHCSRCLIPFTAYNATY +EVDRLLRPGGYLVI
Sbjct: 240 ALERGIPALVAMLGTRRLPFPAFSFDLVHCSRCLIPFTAYNATYFLEVDRLLRPGGYLVI 299
Query: 301 SGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDE 360
SGPPV WPKQDKEWADLQAVARALCYEL AVDGNT IWKKP G+SCL NQNEFGLELCDE
Sbjct: 300 SGPPVLWPKQDKEWADLQAVARALCYELKAVDGNTAIWKKPAGDSCLPNQNEFGLELCDE 359
Query: 361 SDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSR 420
SDD +YAWYFKLKKCV+ SSVK + VG IP WP RLTKAPSRA ++KNG DVFEAD+R
Sbjct: 360 SDDSSYAWYFKLKKCVTRISSVKDDQVVGMIPNWPDRLTKAPSRATLLKNGIDVFEADTR 419
Query: 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV 480
RW RRVAYYKN+LN+KLGT AIRN+MDMNAFFGGFAAALTSDPVWVMNVVP RK STL V
Sbjct: 420 RWARRVAYYKNSLNLKLGTAAIRNVMDMNAFFGGFAAALTSDPVWVMNVVPPRKPSTLGV 479
Query: 481 IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLR 540
IYDRGLIGVYHDWCEPFSTYPRTYDLIHV+ IESLIK GS KN C+LVDLMVEMDR+LR
Sbjct: 480 IYDRGLIGVYHDWCEPFSTYPRTYDLIHVTSIESLIKILGSGKNRCNLVDLMVEMDRILR 539
Query: 541 PEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
PEGTVV+RDSPEVIDK+ RIA VRWTA +H+KEP S+GREKILVATK+ WKLPS
Sbjct: 540 PEGTVVIRDSPEVIDKIGRIAQAVRWTATIHEKEPESHGREKILVATKNFWKLPS 594
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810097|ref|XP_002872932.1| hypothetical protein ARALYDRAFT_490495 [Arabidopsis lyrata subsp. lyrata] gi|297318769|gb|EFH49191.1| hypothetical protein ARALYDRAFT_490495 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1048 bits (2710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/599 (82%), Positives = 549/599 (91%), Gaps = 4/599 (0%)
Query: 1 MGHLNLPASKR--NARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMST- 57
MGHLNLPASKR N RQW LLDIV+A FFG+VLLFF+L+FTPLGDS+AASGRQ LL+ST
Sbjct: 1 MGHLNLPASKRSSNPRQWCLLDIVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTA 60
Query: 58 SDPRQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPD 117
SDPRQRQRLV L+EAG H++PIE CPA++V HMPCEDPRRNSQLSREMNFYRERHCPLP+
Sbjct: 61 SDPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPE 120
Query: 118 QTPLCLIPPPRGYKIPVPWPESLSKI-WHANMPYNKIADRKGHQGWMKESGPYFTFPGGG 176
+TPLCLIPPP GYKIPVPWPESL K+ WHANMPYNKIADRKGHQGWMK G YFTFPGGG
Sbjct: 121 ETPLCLIPPPSGYKIPVPWPESLHKVLWHANMPYNKIADRKGHQGWMKREGEYFTFPGGG 180
Query: 177 TMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKA 236
TMF GA +YI+KL QYIP+ GGTLRTALDMGCGVASFGG++LS+ IL LSFAPRDSHK+
Sbjct: 181 TMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKS 240
Query: 237 QIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 296
QIQFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPFTAYNATY IEVDRLLRPGG
Sbjct: 241 QIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGG 300
Query: 297 YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLE 356
YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVG+SCL +QNEFGLE
Sbjct: 301 YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGDSCLPSQNEFGLE 360
Query: 357 LCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFE 416
LCDES P+ AWYFKLK+CV+ SSVKGE A+GTI KWP+RLTK PSRA+VMKNG DVFE
Sbjct: 361 LCDESVPPSDAWYFKLKRCVTRPSSVKGEQALGTISKWPERLTKVPSRAIVMKNGLDVFE 420
Query: 417 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSS 476
AD+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAAAL SDPVWVMNV+PARK
Sbjct: 421 ADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAAALASDPVWVMNVIPARKPL 480
Query: 477 TLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMD 536
TL VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK S+K+ CSLVDLMVEMD
Sbjct: 481 TLDVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMD 540
Query: 537 RMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
R+LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S+GREKIL+ATKSLWKLPS
Sbjct: 541 RILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 599
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130116|ref|XP_002320756.1| predicted protein [Populus trichocarpa] gi|222861529|gb|EEE99071.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/593 (83%), Positives = 539/593 (90%)
Query: 1 MGHLNLPASKRNARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTSDP 60
MGHLNLPASKRN RQWKLLD+V+ATFFGLV LFFLLVFTPLGDSLAASGRQ LL STSDP
Sbjct: 1 MGHLNLPASKRNPRQWKLLDLVTATFFGLVFLFFLLVFTPLGDSLAASGRQTLLRSTSDP 60
Query: 61 RQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTP 120
RQR RLVALIEAG + +PIE+CPAD VDHMPCEDPRRNSQLSREMNFYRERHCP + T
Sbjct: 61 RQRHRLVALIEAGQNAQPIEACPADEVDHMPCEDPRRNSQLSREMNFYRERHCPPVEDTH 120
Query: 121 LCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFA 180
LCLIPPP GYKI V WP+SL KIWHANMP++KIADRKGHQGWMK+ G +F FPGGGTMF
Sbjct: 121 LCLIPPPDGYKISVRWPQSLHKIWHANMPHDKIADRKGHQGWMKKEGEHFIFPGGGTMFP 180
Query: 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF 240
+GA +YI+KL QYIPI GG LRTALDMGCGVAS+GG +L E ILTLSFAPRDSHKAQIQF
Sbjct: 181 EGAVQYIEKLGQYIPIKGGVLRTALDMGCGVASWGGYLLKEGILTLSFAPRDSHKAQIQF 240
Query: 241 ALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300
ALERG+PAFVAMLGTRRLP+PAFSFD+VHCSRCLIPFTAYNA+Y IEV+RLLRPGGYLVI
Sbjct: 241 ALERGVPAFVAMLGTRRLPYPAFSFDLVHCSRCLIPFTAYNASYFIEVNRLLRPGGYLVI 300
Query: 301 SGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDE 360
SGPPVQW KQDKEWADLQAVARALCYELIAVDGNTVIWKKP G+ CL NQNE+GLELCDE
Sbjct: 301 SGPPVQWAKQDKEWADLQAVARALCYELIAVDGNTVIWKKPAGDLCLPNQNEYGLELCDE 360
Query: 361 SDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSR 420
SDDPN AWYFKLKKCVS TS+VKG+ +GTIPKWP RLTKAPSRA+ MKNG D+F+AD+R
Sbjct: 361 SDDPNDAWYFKLKKCVSRTSAVKGDCTIGTIPKWPDRLTKAPSRAVHMKNGLDLFDADTR 420
Query: 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV 480
RW RRVAYYKN+LNVKLGTPAIRN+MDMNAFFG FAAAL DPVWVMNVVPARK STL V
Sbjct: 421 RWVRRVAYYKNSLNVKLGTPAIRNVMDMNAFFGSFAAALMPDPVWVMNVVPARKPSTLGV 480
Query: 481 IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLR 540
IYDRGLIGVYHDWCEPFSTYPR+YDLIHV+GIESL+K PGS+KN C+LVDLMVEMDR+LR
Sbjct: 481 IYDRGLIGVYHDWCEPFSTYPRSYDLIHVAGIESLLKLPGSSKNRCNLVDLMVEMDRILR 540
Query: 541 PEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKL 593
PEGTV++RDSPEVIDKV+R+A VRW +H+KEP S+GREKILVATK+ WKL
Sbjct: 541 PEGTVIIRDSPEVIDKVARVALAVRWLVTIHEKEPESSGREKILVATKTFWKL 593
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432183|ref|XP_004133879.1| PREDICTED: probable methyltransferase PMT13-like [Cucumis sativus] gi|449480142|ref|XP_004155811.1| PREDICTED: probable methyltransferase PMT13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/594 (81%), Positives = 538/594 (90%), Gaps = 1/594 (0%)
Query: 1 MGHLNLPASKRNARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTSDP 60
MGH+NLPASKRN RQW+LLDIVSA FFGLVLLFFLLVFT LGDSLAASGRQ LL+S +DP
Sbjct: 1 MGHVNLPASKRNGRQWRLLDIVSAAFFGLVLLFFLLVFTRLGDSLAASGRQTLLLSNADP 60
Query: 61 RQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTP 120
QRQR++ L+EAG + IE+CPA++VDHMPCEDPRRNSQLSREMN+YRERHCPLP +TP
Sbjct: 61 GQRQRIMELVEAGQK-QAIEACPAEAVDHMPCEDPRRNSQLSREMNYYRERHCPLPYETP 119
Query: 121 LCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFA 180
LCLIPPP GYKIPV WPESL KIWH+NMP+NKIADRKGHQGWMK+ GP+F FPGGGTMF
Sbjct: 120 LCLIPPPDGYKIPVQWPESLHKIWHSNMPHNKIADRKGHQGWMKQEGPHFIFPGGGTMFP 179
Query: 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF 240
DGA +YI+KL QYIP GG LRTALDMGCGVASFGG ML+E+ILT+SFAPRDSHKAQIQF
Sbjct: 180 DGAVQYIEKLGQYIPTKGGILRTALDMGCGVASFGGYMLAEDILTVSFAPRDSHKAQIQF 239
Query: 241 ALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300
ALERG+PAFVAMLGTR+LPFPAFSFD+VHCSRCLIPFTAYNATY IEVDRLLRPGG+LVI
Sbjct: 240 ALERGVPAFVAMLGTRKLPFPAFSFDLVHCSRCLIPFTAYNATYFIEVDRLLRPGGFLVI 299
Query: 301 SGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDE 360
SGPPVQWPKQDKEWADLQ+VARALCYELIAVDGNTVIWKKPVG+SCL NQNEFGLELC+E
Sbjct: 300 SGPPVQWPKQDKEWADLQSVARALCYELIAVDGNTVIWKKPVGDSCLPNQNEFGLELCNE 359
Query: 361 SDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSR 420
SDDPN AWY KL +CVS TSS K E+AVGTIPKWP RL KAP RA V+KNG DVF ADSR
Sbjct: 360 SDDPNRAWYVKLNRCVSRTSSAKDEFAVGTIPKWPDRLAKAPPRAGVVKNGLDVFNADSR 419
Query: 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV 480
RW RRVAYYK +L +KLGTPA+RN+MDMNAFFGGFAAA+ SDPVWVMNVVP+ K STL+
Sbjct: 420 RWERRVAYYKKSLKLKLGTPAVRNVMDMNAFFGGFAAAIKSDPVWVMNVVPSHKPSTLAA 479
Query: 481 IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLR 540
IYDRGLIGVYHDWCEPFSTYPR+YD IHVSGIESL+ PGS+K+ C+LVDLMVEMDR LR
Sbjct: 480 IYDRGLIGVYHDWCEPFSTYPRSYDFIHVSGIESLVNYPGSDKSRCNLVDLMVEMDRFLR 539
Query: 541 PEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLP 594
PEGTVV+RD+PE I++VSRIA +RWTA VH+KEPGS GREKILVATK+ WKLP
Sbjct: 540 PEGTVVIRDNPEAIERVSRIARAIRWTATVHEKEPGSQGREKILVATKNFWKLP 593
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520463|ref|XP_003528881.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/594 (77%), Positives = 528/594 (88%), Gaps = 3/594 (0%)
Query: 1 MGHLNLPASKRNARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTS-D 59
M HLNLPASKR RQW++LD++SA FFGLV LFF+LVFTP GDSLAASGRQ LL+S S D
Sbjct: 1 MPHLNLPASKR-VRQWRVLDLISAAFFGLVFLFFMLVFTPAGDSLAASGRQTLLLSASAD 59
Query: 60 PRQRQRLVALIEAGHHVKPIESCPADSV-DHMPCEDPRRNSQLSREMNFYRERHCPLPDQ 118
PRQR + A IEAG + I++CPAD+ DHMPCEDPR NSQLSREMN+YRERHCP +
Sbjct: 60 PRQRLHVAAAIEAGQQSRVIDACPADTAADHMPCEDPRLNSQLSREMNYYRERHCPPLET 119
Query: 119 TPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTM 178
+PLCL+PPP+GYK+PV WPESL KIWH+NMPYNKIADRKGHQGWMK GP+F FPGGGTM
Sbjct: 120 SPLCLVPPPKGYKVPVQWPESLHKIWHSNMPYNKIADRKGHQGWMKLDGPHFIFPGGGTM 179
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI 238
F DGA++YI+KL QYIP+ GG LRTALDMGCGVASFGG +L++NILT+SFAPRDSHK+QI
Sbjct: 180 FPDGAEQYIEKLGQYIPMNGGILRTALDMGCGVASFGGYLLAQNILTMSFAPRDSHKSQI 239
Query: 239 QFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 298
QFALERG+PAFVAMLGTRRLPFPAF FD+VHCSRCLIPFTAYNA+Y IEVDRLLRPGGYL
Sbjct: 240 QFALERGVPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYL 299
Query: 299 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELC 358
VISGPPVQWPKQDKEW+DLQAVARALCYELIAVDGNTVIWKKP E CL NQNEFGL+LC
Sbjct: 300 VISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPAVEMCLPNQNEFGLDLC 359
Query: 359 DESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEAD 418
D+SDDP++AWYFKLKKC++ SSVKGEYA+GTIPKWP+RLT +P R+ V+KNG DV+EAD
Sbjct: 360 DDSDDPSFAWYFKLKKCITRMSSVKGEYAIGTIPKWPERLTASPPRSTVLKNGADVYEAD 419
Query: 419 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTL 478
++RW RRVA+YKN+L +KLGTPA+RN+MDMNAFFGGFAAAL SDPVWVMNVVP+ K TL
Sbjct: 420 TKRWVRRVAHYKNSLKIKLGTPAVRNVMDMNAFFGGFAAALNSDPVWVMNVVPSHKPITL 479
Query: 479 SVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRM 538
I+DRGLIGVYHDWCEPFSTYPRTYDLIH + IESLIK+P S +N CSL+DLMVE+DR+
Sbjct: 480 DAIFDRGLIGVYHDWCEPFSTYPRTYDLIHATSIESLIKDPASGRNRCSLLDLMVELDRI 539
Query: 539 LRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWK 592
LRPEGTVVVRD+PEVI+KV+R+ VRW +++KEP S+GREKILVATK+ WK
Sbjct: 540 LRPEGTVVVRDTPEVIEKVARVVRAVRWKPTIYNKEPESHGREKILVATKTFWK 593
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4325338|gb|AAD17338.1| F15P23.2 gene product [Arabidopsis thaliana] gi|7267413|emb|CAB80883.1| predicted protein of unknown function [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/619 (75%), Positives = 523/619 (84%), Gaps = 56/619 (9%)
Query: 1 MGHLNLPASKR-NARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMST-S 58
MGH+NLPASKR N RQW+LLDIV+A FFG+VLLFF+L+FTPLGDS+AASGRQ LL+ST S
Sbjct: 1 MGHVNLPASKRGNPRQWRLLDIVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTAS 60
Query: 59 DPRQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQ 118
DPRQRQRLV L+EAG H++PIE CPA++V HMPCEDPRRNSQLSREMNFYRERHCPLP++
Sbjct: 61 DPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEE 120
Query: 119 TPLCLIPPPRGYKIPVPWPESLSK----------IWHANMPYNKIADRKGHQGWMKESGP 168
TPLCLIPPP GYKIPVPWPESL K IWHANMPYNKIADRKGHQGWMK G
Sbjct: 121 TPLCLIPPPSGYKIPVPWPESLHKVYWILAPITMIWHANMPYNKIADRKGHQGWMKREGE 180
Query: 169 YFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSF 228
YFTFPGGGTMF GA +YI+KL QYIP+ GGTLRTALDMGCGVASFGG++LS+ IL LSF
Sbjct: 181 YFTFPGGGTMFPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSF 240
Query: 229 APRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY-------- 280
APRDSHK+QIQFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPFTAY
Sbjct: 241 APRDSHKSQIQFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYSESLGLYT 300
Query: 281 ----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTV 336
+ATY IEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTV
Sbjct: 301 STYVHATYFIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTV 360
Query: 337 IWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQ 396
IWKKPVG+SCL +QNEFGLELCDES P+ AWYFKLK+CV+ SSVKGE+A+GTI KWP+
Sbjct: 361 IWKKPVGDSCLPSQNEFGLELCDESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPE 420
Query: 397 RLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFA 456
RLTK PSRA+VMKNG DVFEAD+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFA
Sbjct: 421 RLTKVPSRAIVMKNGLDVFEADARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFA 480
Query: 457 AALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516
A L SDPVWVMNV+PARK TL VIYDRGLIGVYHDWC
Sbjct: 481 ATLASDPVWVMNVIPARKPLTLDVIYDRGLIGVYHDWC---------------------- 518
Query: 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG 576
SLVDLMVEMDR+LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP
Sbjct: 519 ----------SLVDLMVEMDRILRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPE 568
Query: 577 SNGREKILVATKSLWKLPS 595
S+GREKIL+ATKSLWKLPS
Sbjct: 569 SHGREKILIATKSLWKLPS 587
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568320|ref|XP_003552360.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/580 (79%), Positives = 518/580 (89%), Gaps = 3/580 (0%)
Query: 14 RQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTSDPRQRQRLVALIEAG 73
RQW+LLD+VS FF LVLLFF +VFTPLGDSLAASGRQ LL S +DP+QR RLVA IEAG
Sbjct: 20 RQWRLLDLVSGVFFFLVLLFFTMVFTPLGDSLAASGRQTLLRSGADPQQRHRLVAAIEAG 79
Query: 74 HHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIP 133
+ +E+CPA DHMPCEDPR NSQLSREMN+YRERHCP P+ +PLCLIPPP GY++P
Sbjct: 80 G--RGVEACPAADADHMPCEDPRLNSQLSREMNYYRERHCPRPEDSPLCLIPPPHGYRVP 137
Query: 134 VPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQY 193
VPWPESL KIWH+NMPYNKIADRKGHQGWMK G +F FPGGGTMF DGA++YI+KL QY
Sbjct: 138 VPWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQY 197
Query: 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAML 253
IPI+ G LRTALDMGCGVASFGG MLS+NILT+SFAPRDSHKAQIQFALERGIPAFVAML
Sbjct: 198 IPISEGVLRTALDMGCGVASFGGYMLSKNILTMSFAPRDSHKAQIQFALERGIPAFVAML 257
Query: 254 GTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313
GTRRLPFPAF FD+VHCSRCLIPFTAYNA+Y IEVDRLLRPGGYLVISGPPVQWPKQDKE
Sbjct: 258 GTRRLPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYLVISGPPVQWPKQDKE 317
Query: 314 WADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLK 373
W+DLQAVARALCYELIAVDGNTVIWKKPVGESCL N+NEFGLELCD+SD P+ AWYFKLK
Sbjct: 318 WSDLQAVARALCYELIAVDGNTVIWKKPVGESCLPNENEFGLELCDDSDYPSQAWYFKLK 377
Query: 374 KCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTL 433
KCVS T SVKG+YA+G IPKWP+RLT P R+ ++KNG DV+EAD++RW RRVA+YKN+L
Sbjct: 378 KCVSRT-SVKGDYAIGIIPKWPERLTAIPPRSTLLKNGVDVYEADTKRWARRVAHYKNSL 436
Query: 434 NVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDW 493
+KLGT +RN+MDMNA FGGFAAAL SDPVWV+NVVPA K TL VI+DRGLIGVYHDW
Sbjct: 437 KIKLGTRFVRNVMDMNALFGGFAAALKSDPVWVINVVPALKPPTLDVIFDRGLIGVYHDW 496
Query: 494 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV 553
CEPFSTYPR+YDLIHV+ IESLIK+P S +N C+LVDLMVE+DRMLRPEGTVVVRD+PEV
Sbjct: 497 CEPFSTYPRSYDLIHVASIESLIKDPASGQNRCTLVDLMVEIDRMLRPEGTVVVRDAPEV 556
Query: 554 IDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKL 593
ID+V+RIA+ VRW V+DKEP S+GREKILVATK+LWKL
Sbjct: 557 IDRVARIASAVRWKPTVYDKEPESHGREKILVATKTLWKL 596
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505029|ref|XP_003521295.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/597 (77%), Positives = 528/597 (88%), Gaps = 6/597 (1%)
Query: 1 MGHLNLPASKRNARQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTS-- 58
MGH+NLPASKR RQW++LD+VSA FFGLV LFFLLVFTP GDSLAASGRQ LL+S S
Sbjct: 1 MGHVNLPASKR-VRQWRVLDLVSAAFFGLVFLFFLLVFTPAGDSLAASGRQTLLLSASSA 59
Query: 59 DPRQRQRLVALIEAGHHVKP--IESCPADSV-DHMPCEDPRRNSQLSREMNFYRERHCPL 115
DPR R R+ A IE +P IE+CPAD+ DHMPCEDPR NSQLSREMN+YRERHCP
Sbjct: 60 DPRLRLRVSAAIEEAGQRQPRVIEACPADTAADHMPCEDPRLNSQLSREMNYYRERHCPP 119
Query: 116 PDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGG 175
+ TPLCL+PP +GYK+PV WPESL KIWH+NMPYNKIADRKGHQGWMK GP+F FPGG
Sbjct: 120 LETTPLCLVPPLKGYKVPVKWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGPHFIFPGG 179
Query: 176 GTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHK 235
GTMF DGA++YI+KL QYIPI GG LRTALDMGCGVASFGG +L++NILT+SFAPRDSHK
Sbjct: 180 GTMFPDGAEQYIEKLGQYIPINGGVLRTALDMGCGVASFGGYLLAQNILTMSFAPRDSHK 239
Query: 236 AQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 295
+QIQFALERG+PAFVAMLGTRRLPFPAF FD+VHCSRCLIPFTAYN +Y IEVDRLLRPG
Sbjct: 240 SQIQFALERGVPAFVAMLGTRRLPFPAFGFDLVHCSRCLIPFTAYNVSYFIEVDRLLRPG 299
Query: 296 GYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGL 355
GYLVISGPPVQWPKQDKEW+DLQAVARALCYELIAVDGNTVIWKKP E CL NQNEFGL
Sbjct: 300 GYLVISGPPVQWPKQDKEWSDLQAVARALCYELIAVDGNTVIWKKPAAEMCLPNQNEFGL 359
Query: 356 ELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVF 415
+LCD+SDDP++AWYFKLKKCV+ SSVKGEYA+GTIPKWP+RLT +P R+ V+KNG DV+
Sbjct: 360 DLCDDSDDPSFAWYFKLKKCVTRMSSVKGEYAIGTIPKWPERLTASPLRSTVLKNGADVY 419
Query: 416 EADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS 475
EAD++RW RRVA+YKN+L +KLGT A+RN+MDMNAFFGGFAAAL SDPVWVMNVVP+ K
Sbjct: 420 EADTKRWVRRVAHYKNSLKIKLGTSAVRNVMDMNAFFGGFAAALNSDPVWVMNVVPSHKP 479
Query: 476 STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEM 535
TL I+DRGLIGVYHDWCEPFSTYPRTYDLIHV+ +ESL+K+P S +N C+L+DLMVE+
Sbjct: 480 ITLDAIFDRGLIGVYHDWCEPFSTYPRTYDLIHVASMESLVKDPASGRNRCTLLDLMVEL 539
Query: 536 DRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWK 592
DR+LRPEGTVVVRD+PEVI+KV+R+A+ VRW +++KEP S+GREKILVATK+ WK
Sbjct: 540 DRILRPEGTVVVRDTPEVIEKVARVAHAVRWKPTIYNKEPESHGREKILVATKTFWK 596
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532064|ref|XP_003534594.1| PREDICTED: probable methyltransferase PMT13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/580 (78%), Positives = 513/580 (88%), Gaps = 3/580 (0%)
Query: 14 RQWKLLDIVSATFFGLVLLFFLLVFTPLGDSLAASGRQALLMSTSDPRQRQRLVALIEAG 73
RQW+LLD+VS FF LVLLFF +VFTPLGDSLAASGRQ LL S +DPRQ RLVA IEAG
Sbjct: 21 RQWRLLDLVSGVFFFLVLLFFAMVFTPLGDSLAASGRQTLLRSGADPRQHHRLVAAIEAG 80
Query: 74 HHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIP 133
+ +E+CPA DHMPCEDPR NSQLSREMN+YRERHCP P+ +PLCLIPPP GY++P
Sbjct: 81 G--RGLEACPAADADHMPCEDPRLNSQLSREMNYYRERHCPRPEDSPLCLIPPPHGYRVP 138
Query: 134 VPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQY 193
VPWPESL KIWH+NMPYNKIADRKGHQGWMK G +F FPGGGTMF DGA++YI+KL QY
Sbjct: 139 VPWPESLHKIWHSNMPYNKIADRKGHQGWMKLEGQHFIFPGGGTMFPDGAEQYIEKLGQY 198
Query: 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAML 253
IPI+ G LRTALDMGCGVASFGG MLS+NILT+SFAPRDSHKAQIQFALERG+PAFVAML
Sbjct: 199 IPISEGVLRTALDMGCGVASFGGYMLSKNILTMSFAPRDSHKAQIQFALERGVPAFVAML 258
Query: 254 GTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313
GTRR PFPAF FD+VHCSRCLIPFTAYNA+Y IEVDRLLRPGGY VISGPPVQWPKQDKE
Sbjct: 259 GTRRQPFPAFGFDLVHCSRCLIPFTAYNASYFIEVDRLLRPGGYFVISGPPVQWPKQDKE 318
Query: 314 WADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLK 373
W+DLQAVARALCYELIAVDGNTVIWKKP GESCL N+NEFGLELCD+SDDP+ AWYFKLK
Sbjct: 319 WSDLQAVARALCYELIAVDGNTVIWKKPAGESCLPNENEFGLELCDDSDDPSQAWYFKLK 378
Query: 374 KCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTL 433
KCVS T VKG+YA+G IPKWP+RLT P R+ ++KNG DV+EAD++RW RRVA+YKN+L
Sbjct: 379 KCVSRT-YVKGDYAIGIIPKWPERLTATPPRSTLLKNGVDVYEADTKRWVRRVAHYKNSL 437
Query: 434 NVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDW 493
+KLGT ++RN+MDMNA FGGFAAAL SDPVWVMNVVPA+K TL VI+DRGLIGVYHDW
Sbjct: 438 KIKLGTQSVRNVMDMNALFGGFAAALKSDPVWVMNVVPAQKPPTLDVIFDRGLIGVYHDW 497
Query: 494 CEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV 553
CEPFSTYPR+YDLIHV +ESLIK+P S +N C+LVDLMVE+DR+LRPEGT+VVRD+PEV
Sbjct: 498 CEPFSTYPRSYDLIHVVSVESLIKDPASGQNRCTLVDLMVEIDRILRPEGTMVVRDAPEV 557
Query: 554 IDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKL 593
ID+V+ IA VRW V+DKEP S+GREKILVATK+LWKL
Sbjct: 558 IDRVAHIAGAVRWKPTVYDKEPESHGREKILVATKTLWKL 597
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 595 | ||||||
| TAIR|locus:2117733 | 600 | QUA3 "QUASIMODO 3" [Arabidopsi | 1.0 | 0.991 | 0.805 | 4.9e-275 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.862 | 0.802 | 0.463 | 2.7e-132 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.868 | 0.816 | 0.452 | 1.3e-130 | |
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.867 | 0.837 | 0.471 | 7.3e-130 | |
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.857 | 0.805 | 0.455 | 6.6e-129 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.842 | 0.806 | 0.474 | 1.7e-128 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.890 | 0.883 | 0.426 | 3.7e-126 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.842 | 0.830 | 0.444 | 1.1e-124 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.840 | 0.818 | 0.441 | 9.8e-119 | |
| TAIR|locus:2195955 | 655 | AT1G77260 [Arabidopsis thalian | 0.845 | 0.767 | 0.427 | 1e-114 |
| TAIR|locus:2117733 QUA3 "QUASIMODO 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2644 (935.8 bits), Expect = 4.9e-275, P = 4.9e-275
Identities = 481/597 (80%), Positives = 537/597 (89%)
Query: 1 MGHLNLPASKR-NARQWKLLDIVSATXXXXXXXXXXXXXTPLGDSLAASGRQALLMST-S 58
MGH+NLPASKR N RQW+LLDIV+A TPLGDS+AASGRQ LL+ST S
Sbjct: 1 MGHVNLPASKRGNPRQWRLLDIVTAAFFGIVLLFFILLFTPLGDSMAASGRQTLLLSTAS 60
Query: 59 DPRQRQRLVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQ 118
DPRQRQRLV L+EAG H++PIE CPA++V HMPCEDPRRNSQLSREMNFYRERHCPLP++
Sbjct: 61 DPRQRQRLVTLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEE 120
Query: 119 TPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTM 178
TPLCLIPPP GYKIPVPWPESL KIWHANMPYNKIADRKGHQGWMK G YFTFPGGGTM
Sbjct: 121 TPLCLIPPPSGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTM 180
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI 238
F GA +YI+KL QYIP+ GGTLRTALDMGCGVASFGG++LS+ IL LSFAPRDSHK+QI
Sbjct: 181 FPGGAGQYIEKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQI 240
Query: 239 QFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 298
QFALERG+PAFVAMLGTRRLPFPA+SFD++HCSRCLIPFTAYNATY IEVDRLLRPGGYL
Sbjct: 241 QFALERGVPAFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYL 300
Query: 299 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELC 358
VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVG+SCL +QNEFGLELC
Sbjct: 301 VISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGDSCLPSQNEFGLELC 360
Query: 359 DESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEAD 418
DES P+ AWYFKLK+CV+ SSVKGE+A+GTI KWP+RLTK PSRA+VMKNG DVFEAD
Sbjct: 361 DESVPPSDAWYFKLKRCVTRPSSVKGEHALGTISKWPERLTKVPSRAIVMKNGLDVFEAD 420
Query: 419 SRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTL 478
+RRW RRVAYY+++LN+KL +P +RN+MDMNAFFGGFAA L SDPVWVMNV+PARK TL
Sbjct: 421 ARRWARRVAYYRDSLNLKLKSPTVRNVMDMNAFFGGFAATLASDPVWVMNVIPARKPLTL 480
Query: 479 SVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRM 538
VIYDRGLIGVYHDWCEPFSTYPRTYD IHVSGIESLIK S+K+ CSLVDLMVEMDR+
Sbjct: 481 DVIYDRGLIGVYHDWCEPFSTYPRTYDFIHVSGIESLIKRQDSSKSRCSLVDLMVEMDRI 540
Query: 539 LRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
LRPEG VV+RDSPEV+DKV+R+A+ VRW++++H+KEP S+GREKIL+ATKSLWKLPS
Sbjct: 541 LRPEGKVVIRDSPEVLDKVARMAHAVRWSSSIHEKEPESHGREKILIATKSLWKLPS 597
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1297 (461.6 bits), Expect = 2.7e-132, P = 2.7e-132
Identities = 250/539 (46%), Positives = 335/539 (62%)
Query: 76 VKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVP 135
VK E C ++ PCED R + R M YRERHCP D+ CLIPPP YKIP
Sbjct: 107 VKYFEPCDMSLSEYTPCEDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFK 166
Query: 136 WPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIP 195
WP+S W+ N+P+ +++ K Q W++ G F FPGGGTMF GAD YID + + IP
Sbjct: 167 WPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGGGTMFPRGADAYIDDIARLIP 226
Query: 196 ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT 255
+T G +RTA+D GCGVASFG +L +I+ +SFAPRD+H+AQ+QFALERG+PA + ++G+
Sbjct: 227 LTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHEAQVQFALERGVPAIIGIMGS 286
Query: 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA 315
RRLP+PA +FD+ HCSRCLIP+ + YL EVDR+LRPGGY ++SGPP+ W K K W
Sbjct: 287 RRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPGGYWILSGPPINWKKYWKGWE 346
Query: 316 ----DLQA-------VARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLE-LCDESD 362
DL+ AR+LC++ + G+ IW+KP+ C + LC +SD
Sbjct: 347 RSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINHVECNKLKRVHKTPPLCSKSD 406
Query: 363 DPNYAWYFKLKKCVSGTSSVKG--EYAVGTIPKWPQRLTKAPSRAL---VMKNGYDVFEA 417
P++AWY L+ CV+ E+A G + WP R P R + + + F
Sbjct: 407 LPDFAWYKDLESCVTPLPEANSSDEFAGGALEDWPNRAFAVPPRIIGGTIPDINAEKFRE 466
Query: 418 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPA-RKSS 476
D+ W+ R++YYK + +L RNIMDMNA+ GGFAAA+ P WVMNVVP +
Sbjct: 467 DNEVWKERISYYKQIMP-ELSRGRFRNIMDMNAYLGGFAAAMMKYPSWVMNVVPVDAEKQ 525
Query: 477 TLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMD 536
TL VI++RG IG Y DWCE FSTYPRTYDLIH G+ S+ +N C + +++EMD
Sbjct: 526 TLGVIFERGFIGTYQDWCEGFSTYPRTYDLIHAGGLFSIYEN------RCDVTLILLEMD 579
Query: 537 RMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLWKLPS 595
R+LRPEGTVV RD+ E++ K+ I N +RW + + D E G EKIL+A KS W PS
Sbjct: 580 RILRPEGTVVFRDTVEMLTKIQSITNGMRWKSRILDHERGPFNPEKILLAVKSYWTGPS 638
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
Identities = 246/544 (45%), Positives = 342/544 (62%)
Query: 67 VALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPP 126
+ L E +K E C ++ PCED +R + R M YRERHCP+ D+ CLIPP
Sbjct: 81 IELKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNMMKYRERHCPVKDELLYCLIPP 140
Query: 127 PRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKY 186
P YKIP WP+S W+ N+P+ +++ K Q W++ G F FPGGGTMF GAD Y
Sbjct: 141 PPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQVEGDRFRFPGGGTMFPRGADAY 200
Query: 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI 246
ID + + IP+T G +RTA+D GCGVASFG +L +I+ +SFAPRD+H+AQ+QFALERG+
Sbjct: 201 IDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMAVSFAPRDTHEAQVQFALERGV 260
Query: 247 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 306
PA + ++G+RRLP+PA +FD+ HCSRCLIP+ + YL+EVDR+LRPGGY ++SGPP+
Sbjct: 261 PAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYLMEVDRVLRPGGYWILSGPPIN 320
Query: 307 WPK---------QD--KEWADLQAVARALCYELIAVDGNTVIWKKPVGE-SCLS-NQNEF 353
W + +D KE ++ VA++LC++ + G+ IW+KP+ C QN
Sbjct: 321 WKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGDLSIWQKPLNHIECKKLKQNNK 380
Query: 354 GLELCDESDDPNYAWYFKLKKCVSGTSSVKG--EYAVGTIPKWPQRLTKAPSRAL---VM 408
+C SD+ + AWY L+ C++ + A G + WP R P R + +
Sbjct: 381 SPPICS-SDNADSAWYKDLETCITPLPETNNPDDSAGGALEDWPDRAFAVPPRIIRGTIP 439
Query: 409 KNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMN 468
+ + F D+ W+ R+A+YK + +L RNIMDMNAF GGFAA++ P WVMN
Sbjct: 440 EMNAEKFREDNEVWKERIAHYKKIVP-ELSHGRFRNIMDMNAFLGGFAASMLKYPSWVMN 498
Query: 469 VVPA-RKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCS 527
VVP + TL VIY+RGLIG Y DWCE FSTYPRTYD+IH G+ SL ++ C
Sbjct: 499 VVPVDAEKQTLGVIYERGLIGTYQDWCEGFSTYPRTYDMIHAGGLFSLYEH------RCD 552
Query: 528 LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT 587
L +++EMDR+LRPEGTVV+RD+ E ++KV +I ++W + + D E G EKILVA
Sbjct: 553 LTLILLEMDRILRPEGTVVLRDNVETLNKVEKIVKGMKWKSQIVDHEKGPFNPEKILVAV 612
Query: 588 KSLW 591
K+ W
Sbjct: 613 KTYW 616
|
|
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
Identities = 257/545 (47%), Positives = 339/545 (62%)
Query: 66 LVALIEAGHHVKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPL-CLI 124
LV EA VK E C D+ PC+D RR R+ YRERHC P+ L CLI
Sbjct: 74 LVGASEAAK-VKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHCA-PENEKLHCLI 131
Query: 125 PPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGAD 184
P P+GY P WP+S + +AN PY + K Q W++ G F FPGGGT F GAD
Sbjct: 132 PAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFPGGGTQFPQGAD 191
Query: 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244
KYID+L IP+ GT+RTALD GCGVAS+G + S N+ +SFAPRDSH+AQ+QFALER
Sbjct: 192 KYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDSHEAQVQFALER 251
Query: 245 GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304
G+PA + +LGT +LP+P +FD+ HCSRCLIP+ A + YL+EVDR+LRPGGY ++SGPP
Sbjct: 252 GVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRPGGYWILSGPP 311
Query: 305 VQW---------PKQD--KEWADLQAVARALCYELIAVDGNTVIWKKPVG-ESCLSNQNE 352
+ W PK+D +E ++ A+ LC+E G IW+K V E+C S Q++
Sbjct: 312 INWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRVNDEACRSRQDD 371
Query: 353 FGLELCDESDDPNYAWYFKLKKCVSG--TSSVKGEYAVGTIPKWPQRLTKAPSR---ALV 407
C ++DD + WY K++ C++ +S E A G + +P RL P R +
Sbjct: 372 PRANFC-KTDDTDDVWYKKMEACITPYPETSSSDEVAGGELQAFPDRLNAVPPRISSGSI 430
Query: 408 MKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVM 467
D +E D+R+W++ V YK +N L T RNIMDMNA FGGFAAAL S +WVM
Sbjct: 431 SGVTVDAYEDDNRQWKKHVKAYKR-INSLLDTGRYRNIMDMNAGFGGFAAALESQKLWVM 489
Query: 468 NVVPA-RKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSC 526
NVVP + + L V+Y+RGLIG+YHDWCE FSTYPRTYDLIH + + SL KN C
Sbjct: 490 NVVPTIAEKNRLGVVYERGLIGIYHDWCEAFSTYPRTYDLIHANHLFSLYKN------KC 543
Query: 527 SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVA 586
+ D+++EMDR+LRPEG V++RD + + KV RI +RW A + D E G EK+L+A
Sbjct: 544 NADDILLEMDRILRPEGAVIIRDDVDTLIKVKRIIAGMRWDAKLVDHEDGPLVPEKVLIA 603
Query: 587 TKSLW 591
K W
Sbjct: 604 VKQYW 608
|
|
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 248/544 (45%), Positives = 335/544 (61%)
Query: 76 VKPIESCPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVP 135
V I SC + ++ PCE R+ RE YRERHCP + C IP P GY +P
Sbjct: 93 VVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPAPYGYSLPFR 152
Query: 136 WPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIP 195
WPES W AN+P+ ++ K +Q W++ F FPGGGTMF GAD YID++ + I
Sbjct: 153 WPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPRGADAYIDEIGRLIN 212
Query: 196 ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT 255
+ G++RTA+D GCGVASFG ++S NI+T+SFAPRD+H+AQ+QFALERG+PA + +L +
Sbjct: 213 LKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALERGVPAIIGVLAS 272
Query: 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW- 314
RLPFPA +FDI HCSRCLIP+ YN TYLIEVDR+LRPGGY ++SGPP+ W + K W
Sbjct: 273 IRLPFPARAFDIAHCSRCLIPWGQYNGTYLIEVDRVLRPGGYWILSGPPINWQRHWKGWE 332
Query: 315 ----------ADLQAVARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLE-LCDESD 362
+ ++ VAR+LC+ + + +W+KP C N+ G C +
Sbjct: 333 RTRDDLNSEQSQIERVARSLCWRKLVQREDLAVWQKPTNHVHCKRNRIALGRPPFCHRTL 392
Query: 363 DPNYAWYFKLKKCVSGTSSVKG----EYAVGTIPKWPQRLTKAPSRALVMKNGY------ 412
PN WY KL+ C++ V G E A G + +WP+RL P R +K+G
Sbjct: 393 -PNQGWYTKLETCLTPLPEVTGSEIKEVAGGQLARWPERLNALPPR---IKSGSLEGITE 448
Query: 413 DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPA 472
D F +++ +W+RRV+YYK T RN +DMNA GGFA+AL DPVWVMNVVP
Sbjct: 449 DEFVSNTEKWQRRVSYYKKYDQQLAETGRYRNFLDMNAHLGGFASALVDDPVWVMNVVPV 508
Query: 473 RKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDL 531
S +TL VIY+RGLIG Y +WCE STYPRTYD IH + SL K+ C + D+
Sbjct: 509 EASVNTLGVIYERGLIGTYQNWCEAMSTYPRTYDFIHADSVFSLYKD------RCDMEDI 562
Query: 532 MVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLW 591
++EMDR+LRP+G+V++RD +V+ KV +I + ++W + D E G REKIL K W
Sbjct: 563 LLEMDRILRPKGSVIIRDDIDVLTKVKKITDAMQWEGRIGDHENGPLEREKILFLVKEYW 622
Query: 592 KLPS 595
P+
Sbjct: 623 TAPA 626
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 255/537 (47%), Positives = 340/537 (63%)
Query: 77 KPIESCPADSV--DHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPL-CLIPPPRGYKIP 133
KP+ P D D+ PC++ R + RE YRERHCP PD L CL+P P+GY P
Sbjct: 81 KPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHCP-PDNEKLRCLVPAPKGYMTP 139
Query: 134 VPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQY 193
PWP+S + +AN P+ + K Q W++ G F FPGGGTMF GAD YI++L
Sbjct: 140 FPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFPGGGTMFPQGADAYIEELASV 199
Query: 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAML 253
IPI G++RTALD GCGVAS+G ML N+LT+SFAPRD+H+AQ+QFALERG+PA +A+L
Sbjct: 200 IPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDNHEAQVQFALERGVPAIIAVL 259
Query: 254 GTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313
G+ LP+PA +FD+ CSRCLIP+TA TYL+EVDR+LRPGGY V+SGPP+ W K
Sbjct: 260 GSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLRPGGYWVLSGPPINWKTWHKT 319
Query: 314 W----ADLQA-------VARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLELCDES 361
W A+L A +A +LC+E G+ I++K + + SC ++ C
Sbjct: 320 WNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKINDRSC---DRSTPVDTCKRK 376
Query: 362 DDPNYAWYFKLKKCVSGTSSVKGEYAV--GTIPKWPQRLTKAP---SRALVMKNGYDV-- 414
D + WY +++ CV+ V E V G + K+P+RL P S+ L+ NG D
Sbjct: 377 DTDD-VWYKEIETCVTPFPKVSNEEEVAGGKLKKFPERLFAVPPSISKGLI--NGVDEES 433
Query: 415 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK 474
++ D W++RV YK +N +G+ RN+MDMNA GGFAAAL S WVMNV+P
Sbjct: 434 YQEDINLWKKRVTGYKR-INRLIGSTRYRNVMDMNAGLGGFAAALESPKSWVMNVIPTIN 492
Query: 475 SSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVE 534
+TLSV+Y+RGLIG+YHDWCE FSTYPRTYD IH SG+ SL ++ SC L D+++E
Sbjct: 493 KNTLSVVYERGLIGIYHDWCEGFSTYPRTYDFIHASGVFSLYQH------SCKLEDILLE 546
Query: 535 MDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLW 591
DR+LRPEG V+ RD +V++ V +I + +RW + D E G EKILVATK W
Sbjct: 547 TDRILRPEGIVIFRDEVDVLNDVRKIVDGMRWDTKLMDHEDGPLVPEKILVATKQYW 603
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1239 (441.2 bits), Expect = 3.7e-126, P = 3.7e-126
Identities = 237/556 (42%), Positives = 339/556 (60%)
Query: 54 LMSTSDPRQRQRLVALIEAGHHVKPIE--SCPADSVDHMPCEDPRRNSQLSREMNFYRER 111
++ SD + + ++ VK + C +D D+ PC DPR+ + + ER
Sbjct: 43 IIEVSDVAKAESSSLDVDDSLQVKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMER 102
Query: 112 HCPLPDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFT 171
HCP CL+PPP GYK P+ WP+S + W+ N+PY+ I +K +Q W+++ G F
Sbjct: 103 HCPPVFDRKQCLVPPPDGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFI 162
Query: 172 FPGGGTMFADGADKYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAP 230
FPGGGTMF G Y+D ++ IP + GT+RTA+D GCGVAS+GG +L ILT+S AP
Sbjct: 163 FPGGGTMFPHGVSAYVDLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAP 222
Query: 231 RDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR 290
RD+H+AQ+QFALERGIPA + ++ T+RLPFP+ SFD+ HCSRCLIP+T + YL+EV R
Sbjct: 223 RDNHEAQVQFALERGIPAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHR 282
Query: 291 LLRPGGYLVISGPPVQWPKQDKEW-----------ADLQAVARALCYELIAVDGNTVIWK 339
+LRPGG+ V+SGPPV + + K W LQ + ++C+++ A + +W+
Sbjct: 283 ILRPGGFWVLSGPPVNYENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQ 342
Query: 340 KPVGESC---LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQ 396
K C LSN + CD+S +P+ AWY L+ CV S + + + PKWP+
Sbjct: 343 KSPDNLCYNKLSNDPDAYPPKCDDSLEPDSAWYTPLRPCVVVPSPKLKKTDLESTPKWPE 402
Query: 397 RLTKAPSRALVMKNGY-DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGF 455
RL P R + G +VF+ D +W+ R +YK L +G+ IRN+MDMN +GG
Sbjct: 403 RLHTTPERISDVPGGNGNVFKHDDSKWKTRAKHYKKLLPA-IGSDKIRNVMDMNTAYGGL 461
Query: 456 AAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515
AAAL +DP+WVMNVV + ++TL V++DRGLIG YHDWCE FSTYPRTYDL+HV G+ +
Sbjct: 462 AAALVNDPLWVMNVVSSYAANTLPVVFDRGLIGTYHDWCEAFSTYPRTYDLLHVDGLFT- 520
Query: 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEP 575
S C + +M+EMDR+LRP G ++R+S D ++ +A +RW+ E
Sbjct: 521 -----SESQRCDMKYVMLEMDRILRPSGYAIIRESSYFADSIASVAKELRWSCRKEQTES 575
Query: 576 GSNGREKILVATKSLW 591
S EK+L+ K LW
Sbjct: 576 AS-ANEKLLICQKKLW 590
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
Identities = 234/527 (44%), Positives = 340/527 (64%)
Query: 82 CPADSVDHMPCEDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLS 141
C ++ D+ PC DP+R + + ERHCP + CLIPPP GYK P+ WP+S
Sbjct: 79 CGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPVYEKNECLIPPPDGYKPPIRWPKSRE 138
Query: 142 KIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIP-ITGGT 200
+ W+ N+PY+ I +K +Q W+K+ G F FPGGGTMF G Y+D ++ IP + GT
Sbjct: 139 QCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRGVSHYVDLMQDLIPEMKDGT 198
Query: 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260
+RTA+D GCGVAS+GG +L IL+LS APRD+H+AQ+QFALERGIPA + ++ T+RLPF
Sbjct: 199 VRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFALERGIPAILGIISTQRLPF 258
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW------ 314
P+ +FD+ HCSRCLIP+T + YL+E+ R++RPGG+ V+SGPPV + ++ + W
Sbjct: 259 PSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPGGFWVLSGPPVNYNRRWRGWNTTMED 318
Query: 315 --AD---LQAVARALCYELIAVDGNTVIWKKPVGESC---LSNQNEFGLELCDESDDPNY 366
+D LQ++ ++C++ A + +W+K +SC ++ E CD+S +P+
Sbjct: 319 QKSDYNKLQSLLTSMCFKKYAQKDDIAVWQKLSDKSCYDKIAKNMEAYPPKCDDSIEPDS 378
Query: 367 AWYFKLKKCV-SGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGY-DVFEADSRRWRR 424
AWY L+ CV + T VK + +G+IPKWP+RL AP R + G + + D +W+
Sbjct: 379 AWYTPLRPCVVAPTPKVK-KSGLGSIPKWPERLHVAPERIGDVHGGSANSLKHDDGKWKN 437
Query: 425 RVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDR 484
RV +YK L LGT IRN+MDMN +GGF+AAL DP+WVMNVV + +++L V++DR
Sbjct: 438 RVKHYKKVLPA-LGTDKIRNVMDMNTVYGGFSAALIEDPIWVMNVVSSYSANSLPVVFDR 496
Query: 485 GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGT 544
GLIG YHDWCE FSTYPRTYDL+H+ + +L + C + +++EMDR+LRP G
Sbjct: 497 GLIGTYHDWCEAFSTYPRTYDLLHLDSLFTL------ESHRCEMKYILLEMDRILRPSGY 550
Query: 545 VVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSLW 591
V++R+S +D ++ +A +RW+ + E EKILV K LW
Sbjct: 551 VIIRESSYFMDAITTLAKGIRWSCRREETEYAVKS-EKILVCQKKLW 596
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1169 (416.6 bits), Expect = 9.8e-119, P = 9.8e-119
Identities = 232/526 (44%), Positives = 318/526 (60%)
Query: 82 CPADSVDHMPCEDPRRNSQLSREMNFYRERHCP-LPDQTPLCLIPPPRGYKIPVPWPESL 140
CP + +++PC DP Q S E ++ RERHCP + + CL+P P GYK P PWPES
Sbjct: 94 CPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPWPESR 153
Query: 141 SKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGT 200
W N+P+ ++A+ K Q W++ G F FPGGGT F G Y+D + +P+ G+
Sbjct: 154 KYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPLASGS 213
Query: 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260
+RT LD+GCGVASFG +L+ ILT+S APRD H+AQ+QFALERG+PA + +L T +LP+
Sbjct: 214 IRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYKLPY 273
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV----QWPKQDKEWAD 316
P+ SFD+VHCSRCL+ +T+Y+ YL+EVDR+LRP GY V+SGPPV ++ Q ++ +
Sbjct: 274 PSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRDSKE 333
Query: 317 LQA-------VARALCYELIAVDGNTVIWKKPVGE-SCLSNQNEFGLE-LCDESDDPNYA 367
LQ V R LC+E IA VIW+KP C LC SD P+ A
Sbjct: 334 LQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSD-PDAA 392
Query: 368 WYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDV--FEADSRRWRRR 425
WY +++ C++ V + WP+RL P G + F+AD+ W+RR
Sbjct: 393 WYKEMEPCITPLPDVNDTNKT-VLKNWPERLNHVPRMKTGSIQGTTIAGFKADTNLWQRR 451
Query: 426 VAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPAR-KSSTLSVIYDR 484
V YY L RN++DMNA GGFAAAL P+WVMNVVP K +TL V+YDR
Sbjct: 452 VLYYDTKFKF-LSNGKYRNVIDMNAGLGGFAAALIKYPMWVMNVVPFDLKPNTLGVVYDR 510
Query: 485 GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGT 544
GLIG Y +WCE STYPRTYDLIH +G+ SL + C +VD+++EM R+LRPEG
Sbjct: 511 GLIGTYMNWCEALSTYPRTYDLIHANGVFSLYLD------KCDIVDILLEMQRILRPEGA 564
Query: 545 VVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSL 590
V++RD +V+ KV I N +RW ++ ++ IL+ S+
Sbjct: 565 VIIRDRFDVLVKVKAITNQMRWNGTMYPEDNSVFDHGTILIVDNSI 610
|
|
| TAIR|locus:2195955 AT1G77260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
Identities = 230/538 (42%), Positives = 325/538 (60%)
Query: 71 EAGHHVKPIESCPADSVDHMPC----EDPRRNSQLSREMNFYRERHCPLPDQTPLCLIPP 126
E G ++ ++ C +D++PC E+ +R + R N+ ERHCP Q+ CLIPP
Sbjct: 135 EVGFQIEKLKLCDKTKIDYIPCLDNEEEIKRLNNTDRGENY--ERHCP--KQSLDCLIPP 190
Query: 127 PRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKY 186
P GYK P+ WP+S KIW N+P+ ++ + KG Q W++ F FPGGGT F GAD+Y
Sbjct: 191 PDGYKKPIQWPQSRDKIWFNNVPHTRLVEDKGGQNWIRREKDKFVFPGGGTQFIHGADQY 250
Query: 187 IDKLKQYIP-IT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244
+D++ Q IP IT G R ALD+GCGVASFG ++ N TLS AP+D H+ QIQFALER
Sbjct: 251 LDQISQMIPDITFGSRTRVALDIGCGVASFGAFLMQRNTTTLSVAPKDVHENQIQFALER 310
Query: 245 GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304
G+PA VA+ TRRL +P+ SF+++HCSRC I +T + L+EV+R+LR GGY V + P
Sbjct: 311 GVPAMVAVFATRRLLYPSQSFEMIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQP 370
Query: 305 VQWPKQD---KEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLE--LCD 359
V + +D ++W ++ + +C+ELI +G +W+KP+ SC ++ E G + LC
Sbjct: 371 V-YKHEDNLQEQWKEMLDLTNRICWELIKKEGYIAVWRKPLNNSCYVSR-EAGTKPPLCR 428
Query: 360 ESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRAL-VMKNGY----DV 414
DDP+ WY +K C+ T Y + WP RL P R + + Y ++
Sbjct: 429 PDDDPDDVWYVDMKPCI--TRLPDNGYGAN-VSTWPARLHDPPERLQSIQMDAYISRKEI 485
Query: 415 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPV--WVMNVVPA 472
+A+SR W V Y K +RN++DM A FGGFAAAL + WVMN+VP
Sbjct: 486 MKAESRFWLEVVESYVRVFRWK--EFKLRNVLDMRAGFGGFAAALNDLGLDCWVMNIVPV 543
Query: 473 RKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLM 532
+TL VIYDRGL G HDWCEPF TYPRTYDLIH + + S+ K C++ ++M
Sbjct: 544 SGFNTLPVIYDRGLQGAMHDWCEPFDTYPRTYDLIHAAFLFSV------EKKRCNITNIM 597
Query: 533 VEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKSL 590
+EMDRMLRP G V +RDS ++D++ ++A + WTA VHD G + +IL+ K +
Sbjct: 598 LEMDRMLRPGGHVYIRDSLSLMDQLQQVAKAIGWTAGVHDTGEGPHASVRILICDKRI 655
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q93W95 | PMTD_ARATH | 2, ., 1, ., 1, ., - | 0.8224 | 1.0 | 0.9916 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 595 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-08 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 5e-04 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 0.003 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 0.003 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 777 bits (2009), Expect = 0.0
Identities = 267/512 (52%), Positives = 352/512 (68%), Gaps = 17/512 (3%)
Query: 88 DHMPCEDPRRNSQ--LSREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLSKIWH 145
D++PC D R + LSRE +RERHCP ++ CL+PPP GYK P+PWP+S K+W+
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 146 ANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRT 203
AN+P+ K+A+ KG Q W+K G F FPGGGT F GAD YID L Q IP GG +RT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 204 ALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAF 263
ALD+GCGVASFG +LS ++LT+SFAP+D H+AQ+QFALERG+PA + +LGTRRLP+P+
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD---KEWADLQAV 320
SFD+ HCSRCLIP+ A + L+EVDR+LRPGGY V+SGPPV ++ +EW ++A+
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDEEDLQEEWKAMEAL 240
Query: 321 ARALCYELIAVDGNTVIWKKPVGESC-LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGT 379
A++LC++L+A G+ IW+KPV SC + LC +SDDP+ AWY ++ C++
Sbjct: 241 AKSLCWKLVAKKGDIAIWQKPVNNSCYNKREPGKKPPLCKDSDDPDAAWYVPMEACITPL 300
Query: 380 SSVKGEYAVGTIPKWPQRLTKAPSRA---LVMKNGYDVFEADSRRWRRRVAYYKNTLNVK 436
V E G + KWP+RLT P R + + F+AD+ W+RRV+ YK L +
Sbjct: 301 PEVSHEVGGGWLEKWPERLTAVPPRLASGQIGGVSAEAFKADTELWKRRVSKYKRLLKLL 360
Query: 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEP 496
+ +RN+MDMNA FGGFAAAL DPVWVMNVVP TL VIYDRGLIG+YHDWCEP
Sbjct: 361 IDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDSPDTLPVIYDRGLIGIYHDWCEP 420
Query: 497 FSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDK 556
FSTYPRTYDL+H + SL K C+L D+++EMDR+LRP G V++RD +V+DK
Sbjct: 421 FSTYPRTYDLLHADHLFSLY------KKRCNLEDILLEMDRILRPGGAVIIRDDVDVLDK 474
Query: 557 VSRIANTVRWTAAVHDKEPGSNGREKILVATK 588
V +IA +RW + D E G + EKIL+A K
Sbjct: 475 VKKIAKAMRWEVRITDTEDGPHDPEKILIAQK 506
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 5e-08
Identities = 32/100 (32%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Query: 205 LDMGCGVASFGGSMLSENILTLSFAPR----DSHKAQIQFALERGIPAFVAMLGTRRLPF 260
LD+GCG G + L R D + A +R FV LPF
Sbjct: 1 LDVGCG----TGLLAEA--LARRGGARVTGVDLSPEMLALARKRAPRKFVVG-DAEDLPF 53
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300
P SFD+V S ++ L E+ R+L+PGG LVI
Sbjct: 54 PDESFDVVVSS-LVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 5e-04
Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 205 LDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRRL 258
LD+GCG + L E + L + D A ++ A ER V + +
Sbjct: 1 LDIGCGTGTLL-RALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI 59
Query: 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 298
SFD+V S L A L + RLL+PGG L
Sbjct: 60 DLDPGSFDVVVASNVLH-HLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 257 RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI---SGPPVQWPKQ 310
LPFP SFD V S L T + L E+ R+L+PGG L++ S P ++
Sbjct: 112 NLPFPDNSFDAVTISFGLRNVTDIDK-ALKEMYRVLKPGGRLLVLEFSKPDNPVLRK 167
|
Length = 238 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 17/147 (11%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGT--- 255
LD+GCG + + D + I+ A E G + G
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
Query: 256 -RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 314
+L SFD+V ++ L E+ R+L+PGG L++S P
Sbjct: 66 LPQLQLEDNSFDVVIS-NEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDP--------VLL 116
Query: 315 ADLQAVARALCYELIAVDGNTVIWKKP 341
++L A+ L V + KK
Sbjct: 117 SELPALLEDLERLYAGVLEGAIGKKKL 143
|
This family appears to be have methyltransferase activity. Length = 151 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 595 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.75 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.69 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.64 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.64 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.61 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.6 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.54 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.54 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.54 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.53 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.51 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.51 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.49 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.48 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.47 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.46 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.45 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.44 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.43 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.42 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.41 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.4 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.4 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.37 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.37 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.36 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.36 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.35 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.34 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.32 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.32 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.32 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.31 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.31 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.3 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.29 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.29 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.28 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.27 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.27 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.26 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.26 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.25 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.23 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.21 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.2 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.18 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.18 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.18 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.18 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.17 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.16 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.16 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.15 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.14 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.14 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.13 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.12 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.12 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.11 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.1 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.1 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.09 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.08 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.08 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.07 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.07 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.06 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.05 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.04 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.04 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.03 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.03 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.03 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.01 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.0 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.99 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.99 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.98 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.97 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.97 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.97 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.96 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.96 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.96 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.95 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.95 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.94 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.93 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.9 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.89 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.85 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.83 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.83 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.82 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.79 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.79 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.78 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.78 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.78 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.77 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.77 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.77 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.76 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.75 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.75 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.74 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.73 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.71 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.71 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.69 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.67 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.66 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.64 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.64 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.63 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.63 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.62 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.61 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.61 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.61 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.59 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.57 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.55 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.55 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.52 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.51 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.48 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.47 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.46 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.46 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.44 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.44 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.42 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.4 | |
| PLN02366 | 308 | spermidine synthase | 98.4 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.39 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.39 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.38 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.36 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.34 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.3 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.3 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.29 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.28 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.21 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.2 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.19 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.18 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.17 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.12 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.1 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.09 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.06 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.06 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.04 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.01 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.0 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.99 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.97 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.96 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.96 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.95 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.94 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.9 | |
| PLN02823 | 336 | spermine synthase | 97.9 | |
| PLN02476 | 278 | O-methyltransferase | 97.9 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.9 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.87 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 97.86 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.86 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.84 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.84 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.83 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.79 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 97.76 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.76 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.76 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.75 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.74 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.73 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.71 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.68 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.61 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.59 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 97.59 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 97.56 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 97.55 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 97.55 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 97.54 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 97.54 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.54 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.51 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 97.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 97.46 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 97.46 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.44 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 97.44 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.44 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.44 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.43 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.41 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 97.4 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 97.38 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.37 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.36 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.36 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.35 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 97.35 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 97.33 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 97.33 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.31 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.29 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 97.29 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.28 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 97.27 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.24 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 97.24 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 97.23 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 97.21 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 97.2 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 97.18 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 97.18 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.18 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 97.15 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.14 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 97.12 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.11 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.11 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.07 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.06 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 97.06 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.06 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 97.02 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.01 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.98 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.96 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 96.96 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 96.95 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 96.94 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 96.92 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.92 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.91 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 96.89 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 96.88 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 96.86 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 96.84 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 96.84 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.84 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 96.81 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.81 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.73 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 96.72 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 96.7 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.69 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.67 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.67 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 96.63 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 96.62 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 96.62 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 96.56 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.55 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.53 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.53 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.5 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.47 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 96.47 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.46 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 96.43 | |
| PRK04266 | 226 | fibrillarin; Provisional | 96.42 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.39 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.37 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 96.33 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 96.33 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.32 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.3 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 96.3 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.26 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 96.2 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 96.2 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 96.18 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.15 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.14 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 96.11 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 96.1 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.99 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 95.94 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.88 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 95.88 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 95.85 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 95.83 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 95.81 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 95.79 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 95.73 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 95.72 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.62 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 95.56 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 95.55 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 95.47 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.47 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 95.42 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 95.39 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 95.38 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.31 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 95.3 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 95.27 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.25 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.24 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 95.2 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 95.18 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 95.17 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 95.15 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 95.14 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 95.12 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.08 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 95.07 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 95.04 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 95.0 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 94.89 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 94.84 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 94.79 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.67 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.6 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 94.57 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 94.35 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 94.33 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.08 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 94.01 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 93.9 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 93.86 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 93.8 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 93.79 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 93.73 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.71 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 93.7 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 93.69 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 93.65 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.54 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.51 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.47 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.43 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.36 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 93.3 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 93.08 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 93.06 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 93.02 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.89 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 92.74 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 92.58 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 92.56 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 92.47 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 92.34 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 92.16 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 91.94 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 91.92 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 91.76 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.6 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 91.42 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 91.29 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 91.03 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 91.02 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 91.01 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 90.93 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 90.92 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 90.57 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 90.11 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 90.09 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 89.93 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 89.9 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 89.77 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 89.7 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 89.32 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.85 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 88.56 | |
| PLN02366 | 308 | spermidine synthase | 88.27 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 88.06 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 87.94 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 87.85 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 87.72 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 87.66 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 87.51 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 87.3 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 87.07 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 87.03 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 86.99 | |
| PHA01634 | 156 | hypothetical protein | 86.97 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.86 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 86.52 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 85.5 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.99 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 84.78 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 84.78 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 84.64 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 84.41 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 84.41 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 84.41 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 84.3 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 84.3 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 84.25 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 84.18 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 84.15 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 84.01 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 82.95 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 82.85 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 81.88 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 81.53 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 81.46 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 81.25 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 80.82 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 80.3 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 80.08 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-159 Score=1266.75 Aligned_cols=495 Identities=53% Similarity=1.032 Sum_probs=479.6
Q ss_pred CccccCCchhhhhh--hhhhhhhhcCCCCCCCCCCceecCCCCCCCCCCCCCcccccccccCCCcchhhhcccccccccc
Q 007645 88 DHMPCEDPRRNSQL--SREMNFYRERHCPLPDQTPLCLIPPPRGYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKE 165 (595)
Q Consensus 88 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~r~~Clv~~P~~y~~P~~wP~s~d~vwy~n~p~~~L~~~k~~q~w~~~ 165 (595)
|||||+|+.+++++ ++++++|+|||||+.+++++||||+|++|+.|++||+|||++||+|+||+.|+++|+.|+|++.
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhccc--cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~--~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
+++++.|||+|++|.+|+++|++.|.++++. ..+.+|++||||||+|+|+++|+++++.++++++.|.+++++|+|+|
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999998 77889999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC---chhHHHHHHH
Q 007645 244 RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---DKEWADLQAV 320 (595)
Q Consensus 244 rg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~---~~~w~~l~~l 320 (595)
||+++.+.....++||||+++||+|||++|+.+|..+.+.+|.|++|+|||||+|++++||.+.... ...|..|+++
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l 240 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDL 240 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988889999999999999999999999984332 2349999999
Q ss_pred HHHcCcEEEEeecceeEeeccCCcccccccC-CCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccC
Q 007645 321 ARALCYELIAVDGNTVIWKKPVGESCLSNQN-EFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLT 399 (595)
Q Consensus 321 a~~~~w~~v~~~~~~~iw~K~~~~~c~~~~~-~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~ 399 (595)
+++|||++++++++++|||||.+++||.+|. .+.||+|++++|||++||++|++||||+|++.++.+++++++||+||+
T Consensus 241 ~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~~~~~WP~RL~ 320 (506)
T PF03141_consen 241 AKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGGWLPKWPERLN 320 (506)
T ss_pred HHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCcccccccccCCCCChhhhc
Confidence 9999999999999999999999999999865 489999998899999999999999999999888999999999999999
Q ss_pred CCCccccc---cccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCC
Q 007645 400 KAPSRALV---MKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSS 476 (595)
Q Consensus 400 ~~p~~~~~---~~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~ 476 (595)
++|+||+. .|+++|.|++|+++|+++|++|++++...+++++||||||||||+|||||||.++|||||||||.+++|
T Consensus 321 ~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~n 400 (506)
T PF03141_consen 321 AVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPN 400 (506)
T ss_pred cCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCCceEEEecccCCCC
Confidence 99999974 899999999999999999999999888789999999999999999999999999999999999999999
Q ss_pred chhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHH
Q 007645 477 TLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDK 556 (595)
Q Consensus 477 ~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~ 556 (595)
||++||||||||+||||||+|||||||||||||+++||.|+ +||+|++|||||||||||||++||||+.+++++
T Consensus 401 tL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~------~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~ 474 (506)
T PF03141_consen 401 TLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK------DRCEMEDILLEMDRILRPGGWVIIRDTVDVLEK 474 (506)
T ss_pred cchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc------ccccHHHHHHHhHhhcCCCceEEEeccHHHHHH
Confidence 99999999999999999999999999999999999999997 999999999999999999999999999999999
Q ss_pred HHHhHhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 557 VSRIANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 557 ~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
|++|+++|||+++++|+|+|++++||||||||
T Consensus 475 v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 475 VKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 99999999999999999999999999999998
|
; GO: 0008168 methyltransferase activity |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=336.00 Aligned_cols=197 Identities=19% Similarity=0.296 Sum_probs=165.5
Q ss_pred cccccccCCccccccccCCCCCCCCcc------cCCCCccccccccChh---------hhhhhhhhHHHHHHHHHHHhhh
Q 007645 371 KLKKCVSGTSSVKGEYAVGTIPKWPQR------LTKAPSRALVMKNGYD---------VFEADSRRWRRRVAYYKNTLNV 435 (595)
Q Consensus 371 ~l~~c~~~~~~~~~~~~~~~~~~wp~r------l~~~p~~~~~~~~~~~---------~f~~d~~~w~~~v~~y~~~l~~ 435 (595)
....|+.|+|.+|+ .+.+||+. -|++.++|+..+..++ .|.-....+++++.+|++.|.+
T Consensus 33 ~~~~CLVp~P~gYk-----~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~ 107 (506)
T PF03141_consen 33 ERLRCLVPPPKGYK-----TPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAE 107 (506)
T ss_pred CCCccccCCCccCC-----CCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHH
Confidence 56789999999887 78999994 3778888865444333 4666666779999999988887
Q ss_pred ccC----CCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhc---ccCCCCCCCCCccchh
Q 007645 436 KLG----TPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYH---DWCEPFSTYPRTYDLI 507 (595)
Q Consensus 436 ~~~----~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~---~wce~f~typrtyDl~ 507 (595)
++. .++||++||+|||+|||||+|++++|.+|+++|.+.| +|+|||+|||+.+++. +...+|+. ++|||+
T Consensus 108 ~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~--~~fDmv 185 (506)
T PF03141_consen 108 MIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPS--NAFDMV 185 (506)
T ss_pred HhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCc--cchhhh
Confidence 774 4999999999999999999999999999999999998 9999999999765553 33444333 999999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe----------CChHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----------DSPEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r----------d~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
||++|.+.|+ . .-+.+|+|+|||||||||||++ |..+++++|+++|++|||+..+.
T Consensus 186 Hcsrc~i~W~------~--~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~------ 251 (506)
T PF03141_consen 186 HCSRCLIPWH------P--NDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE------ 251 (506)
T ss_pred hcccccccch------h--cccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee------
Confidence 9999999998 1 1246999999999999999997 34588999999999999999998
Q ss_pred CCCceEEEEEecc
Q 007645 578 NGREKILVATKSL 590 (595)
Q Consensus 578 ~~~~~~l~~~K~~ 590 (595)
+.+++||||+.
T Consensus 252 --~~~~aIwqKp~ 262 (506)
T PF03141_consen 252 --KGDTAIWQKPT 262 (506)
T ss_pred --eCCEEEEeccC
Confidence 67799999984
|
; GO: 0008168 methyltransferase activity |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=184.01 Aligned_cols=318 Identities=16% Similarity=0.177 Sum_probs=172.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccc--cCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTR--RLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~--~LPfpd 262 (595)
..+.+.++...+. +|||+|||+|.++..|++.. ..++++|+++.+++.+++.. .++.+.+.++. .+++++
T Consensus 27 ~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 27 PEILSLLPPYEGK--SVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred hHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 3445555544433 89999999999999999874 37889999999999886542 34677777764 578888
Q ss_pred CceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCCC---------CCchhHHHHHHHHHHcCcEEEEee
Q 007645 263 FSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWP---------KQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~---------~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
++||+|+|..+++|+.++ ...++.++.|+|||||++++.+...... .....-....+++.+.++......
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 181 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDGN 181 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCCCC
Confidence 999999999999887632 4689999999999999999976422111 000011224445555554443221
Q ss_pred cc-e-eEeeccCCcccccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCcccccccc
Q 007645 333 GN-T-VIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKN 410 (595)
Q Consensus 333 ~~-~-~iw~K~~~~~c~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~ 410 (595)
.. + ..+.+..+. |.+...+.--+|.....-+..=...+..++ +|+.-.++.+.
T Consensus 182 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~y~~~~i~---- 236 (475)
T PLN02336 182 SFELSLVGCKCIGA--YVKNKKNQNQICWLWQKVSSTNDKGFQRFL-------------------DNVQYKSSGIL---- 236 (475)
T ss_pred EEEEEEEEeechhh--hhhccCCcceEEEEEEeecCCcchhHHHHh-------------------hhhccccccHH----
Confidence 11 0 011111111 111101100011100000000001111111 11111112110
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc--cc-
Q 007645 411 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--GL- 486 (595)
Q Consensus 411 ~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Gl- 486 (595)
..+.|-...-.+...|..-..++. .+.-+.-..|||+|||.|+++..|.+.. -.+|+-.|-. ..|..+-++ |+
T Consensus 237 ~~~~f~g~~~~v~~~v~~te~l~~-~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~ 313 (475)
T PLN02336 237 RYERVFGEGFVSTGGLETTKEFVD-KLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK 313 (475)
T ss_pred HHHHHhCCCCCCCchHHHHHHHHH-hcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC
Confidence 111111111111112211111111 1212234689999999999988886542 1134444433 555555443 21
Q ss_pred --hh-hhcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 487 --IG-VYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 487 --ig-~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+- ...|+.+ ..+| .+||+|.+.+++.++. +.+.+|-|+-|+|+|||.+++.|
T Consensus 314 ~~v~~~~~d~~~--~~~~~~~fD~I~s~~~l~h~~---------d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 314 CSVEFEVADCTK--KTYPDNSFDVIYSRDTILHIQ---------DKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CceEEEEcCccc--CCCCCCCEEEEEECCcccccC---------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 11 1233332 1244 6899999988887664 34578999999999999999874
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=160.15 Aligned_cols=115 Identities=26% Similarity=0.287 Sum_probs=98.8
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCC-----eEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIP-----AFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~-----~~~~~~d~~~LP 259 (595)
.+.+.+.+.+....| .+|||+|||||.++..+++... ...++++|+|++|++.|+++..+ +.++++|++.||
T Consensus 38 ~Wr~~~i~~~~~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP 114 (238)
T COG2226 38 LWRRALISLLGIKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP 114 (238)
T ss_pred HHHHHHHHhhCCCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC
Confidence 344555565555444 4999999999999999998843 56899999999999999998543 789999999999
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+|++||+|.+++.|.++. +.+.+|+|+.|||||||++++.+-
T Consensus 115 f~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle~ 157 (238)
T COG2226 115 FPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLEF 157 (238)
T ss_pred CCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEEc
Confidence 9999999999999997776 899999999999999999988763
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=130.48 Aligned_cols=93 Identities=31% Similarity=0.449 Sum_probs=80.4
Q ss_pred EEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--CeEEEEcccccCCCCCCceeEEEEcCCCcccccCHH
Q 007645 205 LDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA 282 (595)
Q Consensus 205 LDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~ 282 (595)
||+|||+|.++..|+++ ...+++++|+++++++.++++.. ...+...+..++|+++++||+|++..+++|+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 34588999999999999999854 3558889999999999999999999999887 5889
Q ss_pred HHHHHHHhhcCCCcEEEE
Q 007645 283 TYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 283 ~~L~Ei~RvLRPGG~lvl 300 (595)
.+++|+.|+|||||++++
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-16 Score=154.86 Aligned_cols=112 Identities=29% Similarity=0.385 Sum_probs=83.1
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfpd 262 (595)
+.+.+.+....+. +|||+|||||.++..++++......++++|+|++|++.|+++ + .++.++++|++++|+++
T Consensus 37 ~~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 37 RKLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD 114 (233)
T ss_dssp SHHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred HHHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence 3444444444444 999999999999999988743445899999999999999876 2 36899999999999999
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++||+|+|++.+++++ |...+|+|+.|+|||||++++.+
T Consensus 115 ~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp T-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 9999999999997776 88999999999999999999876
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=148.85 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=91.2
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--------CCeEEEEcccccCCCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--------~~~~~~~~d~~~LPfpd 262 (595)
.+.+....+ .+|||+|||+|.++..|+++......++++|+|++|++.|+++. .++.+.+++++.+|+++
T Consensus 66 ~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~ 143 (261)
T PLN02233 66 VSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDD 143 (261)
T ss_pred HHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCC
Confidence 344444443 48999999999999988876212247899999999999997652 25778899999999999
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+++.+++++. ++..+++|+.|+|||||++++.+.
T Consensus 144 ~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 144 CYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred CCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 9999999999997775 889999999999999999999864
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=145.68 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=160.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDl 267 (595)
..+...++... .++|.|+|||+|..+..|+++ .....++|+|.|++|++.|+++.+++.|..+|+.... ++..+|+
T Consensus 20 ~dLla~Vp~~~--~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dl 95 (257)
T COG4106 20 RDLLARVPLER--PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDL 95 (257)
T ss_pred HHHHhhCCccc--cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccch
Confidence 34556666654 458999999999999999998 5667899999999999999999999999999988775 5678999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEeeccCCc-cc
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE-SC 346 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw~K~~~~-~c 346 (595)
++++.+| ||.++...+|..+...|.|||.+.+..|.. + .+.....|.+.+++..|......... .++++.. .-
T Consensus 96 lfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN-~--depsH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~ 169 (257)
T COG4106 96 LFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN-L--DEPSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAA 169 (257)
T ss_pred hhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc-c--CchhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHH
Confidence 9999999 888788899999999999999999998721 2 22335568888988888776554332 4666654 33
Q ss_pred ccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCccccccccChhhhhhhhhhHHHHH
Q 007645 347 LSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRV 426 (595)
Q Consensus 347 ~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v 426 (595)
|.. --.+--|. .|.+.+.||++|..--. .-+++.+..+.||=++| |.+.|+...
T Consensus 170 Yy~--lLa~~~~r-vDiW~T~Y~h~l~~a~a----IvdWvkgTgLrP~L~~L-------------------~e~~~~~FL 223 (257)
T COG4106 170 YYE--LLAPLACR-VDIWHTTYYHQLPGADA----IVDWVKGTGLRPYLDRL-------------------DEEERQRFL 223 (257)
T ss_pred HHH--HhCcccce-eeeeeeeccccCCCccc----hhhheeccccceecccc-------------------CHHHHHHHH
Confidence 332 11122454 57899999998743221 11366677777777776 347788889
Q ss_pred HHHHHHhhhc
Q 007645 427 AYYKNTLNVK 436 (595)
Q Consensus 427 ~~y~~~l~~~ 436 (595)
+.|...|+..
T Consensus 224 ~~Y~~~l~~a 233 (257)
T COG4106 224 DRYLALLAEA 233 (257)
T ss_pred HHHHHHHHHh
Confidence 9999877743
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=142.81 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=99.5
Q ss_pred cccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcc
Q 007645 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLG 254 (595)
Q Consensus 178 ~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d 254 (595)
.+..+.....+.+.+.+....+. +|||||||+|..+..|++.. ...++++|+++.+++.|+++.. .+.+...|
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D 107 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEAND 107 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECC
Confidence 33444445566677777666554 89999999999999887652 3478999999999999998743 47788888
Q ss_pred cccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...|+++++||+|++..++.|+. ++...+++++.++|||||+|+++++
T Consensus 108 ~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 108 ILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred cccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 888899999999999998888876 3678999999999999999999875
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=146.97 Aligned_cols=117 Identities=16% Similarity=0.231 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcccc---CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc
Q 007645 184 DKYIDKLKQYIPIT---GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~---~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d 254 (595)
...++.+.+.+... .....+|||||||+|.++..|+++. ...++++|+++.+++.|+++ +. ++.+.++|
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D 176 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD 176 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence 34455566655441 1234589999999999999999862 34788999999999988764 33 47888999
Q ss_pred cccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..+|+++++||+|+|..+++|+. +...++.++.|+|||||.|++++.
T Consensus 177 ~~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 177 ALNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred cccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999999999999999998986 788999999999999999999864
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=146.28 Aligned_cols=129 Identities=14% Similarity=0.127 Sum_probs=104.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
..+|||||||+|.++..|++.+. .++++|.++.+++.|+++. ..+.+.+.+++.+++++++||+|+|..++
T Consensus 132 g~~ILDIGCG~G~~s~~La~~g~---~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARMGA---TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 34899999999999999987653 7889999999999998652 25678888888899888999999999999
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC----------------CCC-------chhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW----------------PKQ-------DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~----------------~~~-------~~~w~~l~~la~~~~w~~v~~ 331 (595)
+|+. ++..+|.++.++|||||.+++++++... ... ...-+++.+++++.+++++..
T Consensus 209 eHv~-d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 209 EHVA-NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred HhcC-CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 9987 8899999999999999999999764321 000 011345888888888888766
Q ss_pred ec
Q 007645 332 DG 333 (595)
Q Consensus 332 ~~ 333 (595)
.+
T Consensus 288 ~G 289 (322)
T PLN02396 288 AG 289 (322)
T ss_pred ee
Confidence 44
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.6e-14 Score=140.89 Aligned_cols=111 Identities=20% Similarity=0.301 Sum_probs=94.3
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
.+.+.+.++... ..+|||+|||+|.++..|++.+ ..+.++|+|+.+++.|+++.....+.+.|.+.+|+++++||
T Consensus 31 a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 31 ADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 345556665433 3489999999999999998765 37889999999999999987666778889999999999999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+++.++ ||..++..++.++.|+|||||.++++++
T Consensus 106 ~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 106 LAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred EEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999988 6666899999999999999999999875
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-14 Score=144.30 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=90.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||||||.|.++..|++.| ..|+++|.++.+++.|+.+ ++.+.+.+..++++-...++||+|+|..+++|+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 389999999999999999998 4889999999999998754 666677777777777666899999999999999
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
+ ++..++..+.+++||||.+++++++.++
T Consensus 138 ~-dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 138 P-DPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred C-CHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 7 8999999999999999999999986443
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=128.40 Aligned_cols=121 Identities=28% Similarity=0.516 Sum_probs=94.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..|++.+. +++++|+++.+++. ........+....+.++++||+|+|+.+|+|.. +
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-d 93 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP-D 93 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-H
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc-c
Confidence 44999999999999999988865 78899999999888 233333333345556789999999999998887 7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCCCC---------CCCCch--------hHHHHHHHHHHcCcEEEE
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPPVQ---------WPKQDK--------EWADLQAVARALCYELIA 330 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~~~---------~~~~~~--------~w~~l~~la~~~~w~~v~ 330 (595)
+..+|.++.++|||||+++++++... |..... .-..+.+++++.+|+++.
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 89999999999999999999998532 211111 134588889999988875
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=139.56 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=83.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC-CCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP-fpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|++++. .++++|+|+.+++.|+++ +. ++.+.+.+...++ +++++||+|+|..+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV 121 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence 45899999999999999999853 788899999999999876 32 4677787877663 66789999999999
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|+. ++..++.++.++|||||++++...
T Consensus 122 l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 122 LEWVA-DPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHhhC-CHHHHHHHHHHHcCCCeEEEEEEE
Confidence 97664 788999999999999999998654
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-13 Score=139.74 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=90.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
...+.+.+....+ .+|||+|||+|.++..|+++. ....++++|+|+.|++.|++++ +.+.+.|++.++ ++++||
T Consensus 18 ~~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD 91 (255)
T PRK14103 18 FYDLLARVGAERA--RRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTD 91 (255)
T ss_pred HHHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCce
Confidence 3455666655444 489999999999999998873 3457899999999999998875 456778887775 568999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+|+.+++|+. ++..++.++.++|||||++++..+
T Consensus 92 ~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 92 VVVSNAALQWVP-EHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EEEEehhhhhCC-CHHHHHHHHHHhCCCCcEEEEEcC
Confidence 999999996654 889999999999999999999865
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=130.85 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=94.1
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.+.+.+.+.+....+. +|||+|||+|.++..+++.......++++|+++.+++.|+++ +. ++.+...|...++
T Consensus 32 ~~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 109 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP 109 (231)
T ss_pred HHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC
Confidence 3345566666655544 899999999999999987632345789999999999988865 22 4677888888888
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|++..++++.. +...++.++.|+|+|||++++.++
T Consensus 110 ~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 110 FDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 8889999999999986654 788999999999999999998765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=135.70 Aligned_cols=134 Identities=19% Similarity=0.231 Sum_probs=100.6
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
...+.+.+....+ .+|||||||+|.++..++++. ....+.++|+++.+++.|+++..++.+...|+..+. ++++||
T Consensus 20 ~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD 95 (258)
T PRK01683 20 ARDLLARVPLENP--RYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALD 95 (258)
T ss_pred HHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCcc
Confidence 4455555555443 489999999999999998873 345889999999999999998777888888887664 456999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
+|+|+.++++. .+...++.++.++|||||.+++..+. .+. ...+..+.+++....|..
T Consensus 96 ~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~~~~~~~~-~~~--~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 96 LIFANASLQWL-PDHLELFPRLVSLLAPGGVLAVQMPD-NLD--EPSHVLMREVAENGPWEQ 153 (258)
T ss_pred EEEEccChhhC-CCHHHHHHHHHHhcCCCcEEEEECCC-CCC--CHHHHHHHHHHccCchHH
Confidence 99999999554 57889999999999999999998652 221 122334555554444543
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=137.06 Aligned_cols=136 Identities=15% Similarity=0.130 Sum_probs=105.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
..+|||+|||+|.++..+++.. ....++++|.++.|++.|+++. .++.+...|.+.+++++++||+|+++.+++++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 3489999999999998887752 2347889999999999998863 346778888999999999999999999998876
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcCC--CCCCCCc--------hhHHHHHHHHHHcCcEEEEeecceeEe
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGPP--VQWPKQD--------KEWADLQAVARALCYELIAVDGNTVIW 338 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p~--~~~~~~~--------~~w~~l~~la~~~~w~~v~~~~~~~iw 338 (595)
+...+++++.|+|||||.+++.++. ..|..+. ..-+++.+++++.+|+.+..+...+.|
T Consensus 193 -d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 193 -DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred -CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhh
Confidence 7789999999999999999987652 2222111 123567788899999988665433333
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=143.54 Aligned_cols=111 Identities=21% Similarity=0.330 Sum_probs=92.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LPfpd~ 263 (595)
+.+.+.+.... ..+|||||||+|.++..|++.. ...++++|+|+.+++.|+++. ..+.+.+.|...++++++
T Consensus 256 e~l~~~~~~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 256 KEFVDKLDLKP--GQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred HHHHHhcCCCC--CCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 33444444433 4489999999999999988762 347899999999999998762 246788889888899889
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+||+|+|..+++|+. ++..++.++.|+|||||.+++.++
T Consensus 332 ~fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 332 SFDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CEEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 999999999998886 789999999999999999999875
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8e-13 Score=132.94 Aligned_cols=90 Identities=19% Similarity=0.157 Sum_probs=78.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..|++.. ...++++|+|++|++.|+++. .+.+++++.+|+++++||+|+|+++++|+. +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~-d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHASD-N 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhccC-C
Confidence 3489999999999999998873 247899999999999998864 356788899999999999999999997665 8
Q ss_pred HHHHHHHHHhhcCCCc
Q 007645 281 NATYLIEVDRLLRPGG 296 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG 296 (595)
+..+++|+.|+|||.+
T Consensus 126 ~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 126 IEKVIAEFTRVSRKQV 141 (226)
T ss_pred HHHHHHHHHHHhcCce
Confidence 8999999999999953
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=126.62 Aligned_cols=143 Identities=15% Similarity=0.258 Sum_probs=99.3
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCce
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sF 265 (595)
.+.+....+ .+|||+|||+|.++..|++++. .++++|+|+.+++.++++ +. ++.+.+.|...++++ ++|
T Consensus 23 ~~~l~~~~~--~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~f 96 (197)
T PRK11207 23 LEAVKVVKP--GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEY 96 (197)
T ss_pred HHhcccCCC--CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCc
Confidence 344443333 3899999999999999999854 788899999999988754 33 366777787777764 679
Q ss_pred eEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC-C-CCCCC-Cc----hhHHHHHHHHHHcCcEEEEeecceeE
Q 007645 266 DIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP-P-VQWPK-QD----KEWADLQAVARALCYELIAVDGNTVI 337 (595)
Q Consensus 266 DlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p-~-~~~~~-~~----~~w~~l~~la~~~~w~~v~~~~~~~i 337 (595)
|+|+|+.+++++. ++...++.++.++|||||++++... . ..... .. ..-.++.+.++ +|+.+........
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~~~~~~ 174 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYNEDVGE 174 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEeeCCHHh
Confidence 9999999986654 2456899999999999999665431 1 00100 00 01234555555 7988877655555
Q ss_pred eecc
Q 007645 338 WKKP 341 (595)
Q Consensus 338 w~K~ 341 (595)
+.+.
T Consensus 175 ~~~~ 178 (197)
T PRK11207 175 LHRT 178 (197)
T ss_pred hccc
Confidence 5554
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-12 Score=125.24 Aligned_cols=146 Identities=14% Similarity=0.226 Sum_probs=101.0
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCce
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sF 265 (595)
+.+.+....+ .+|||+|||+|.++..|++++. .++++|+|+.+++.++++ ++++.....+....+++ ++|
T Consensus 22 l~~~~~~~~~--~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~f 95 (195)
T TIGR00477 22 VREAVKTVAP--CKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDY 95 (195)
T ss_pred HHHHhccCCC--CcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCC
Confidence 3344444333 3899999999999999998864 788999999999877643 55666666676666654 579
Q ss_pred eEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCC-----CchhHHHHHHHHHHcCcEEEEeecceeE
Q 007645 266 DIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP--PVQWPK-----QDKEWADLQAVARALCYELIAVDGNTVI 337 (595)
Q Consensus 266 DlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~-----~~~~w~~l~~la~~~~w~~v~~~~~~~i 337 (595)
|+|+|+.+++++. ++...++.++.|+|||||++++..- ...+.. ......++.++++ .|+.+........
T Consensus 96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~ 173 (195)
T TIGR00477 96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGE 173 (195)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccc
Confidence 9999999997765 3456899999999999999666431 000110 0112445666665 5888877655555
Q ss_pred eeccCC
Q 007645 338 WKKPVG 343 (595)
Q Consensus 338 w~K~~~ 343 (595)
|.+...
T Consensus 174 ~~~~~~ 179 (195)
T TIGR00477 174 LHATDA 179 (195)
T ss_pred cccccc
Confidence 655543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=127.30 Aligned_cols=117 Identities=28% Similarity=0.394 Sum_probs=97.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
..+.+.+.+.+....+. +|||+|||+|.++..+++.......++++|+++.+++.|+++ ..++.+...+...++
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 82 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP 82 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC
Confidence 45556666766665544 899999999999999988632345789999999999999886 345778888888888
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|++..+++|+. ++..++.++.++|||||++++..+
T Consensus 83 ~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 83 FPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred CCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEec
Confidence 8889999999999998876 789999999999999999999876
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=133.67 Aligned_cols=138 Identities=22% Similarity=0.237 Sum_probs=102.4
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--c----CCCeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--R----GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--r----g~~~~~~~~d~~~LPfp 261 (595)
+.+...++...+ ++|||||||+|.++..|+..+.. .++++|.|+.++..++. + ..++.+..++++.+|+
T Consensus 112 ~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 112 DRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-
Confidence 445555654444 48999999999999999998643 58899999988865332 2 2357888889999998
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC-------CCCC-c---------hhHHHHHHHHHHc
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ-------WPKQ-D---------KEWADLQAVARAL 324 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~-------~~~~-~---------~~w~~l~~la~~~ 324 (595)
+++||+|+|..+++|.. ++..+|+++.++|+|||.+++.+.... +... . ..-..+.+++++.
T Consensus 187 ~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~a 265 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERA 265 (322)
T ss_pred cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHc
Confidence 78999999999998875 889999999999999999998642110 0000 0 0123477788888
Q ss_pred CcEEEEe
Q 007645 325 CYELIAV 331 (595)
Q Consensus 325 ~w~~v~~ 331 (595)
||+.+..
T Consensus 266 GF~~i~~ 272 (322)
T PRK15068 266 GFKDVRI 272 (322)
T ss_pred CCceEEE
Confidence 8887754
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=129.05 Aligned_cols=102 Identities=20% Similarity=0.157 Sum_probs=88.8
Q ss_pred CcceEEEECCCCcHHHHHHhhcCC-----ceEEEEeecCcHHHHHHHHHcC----C----CeEEEEcccccCCCCCCcee
Q 007645 200 TLRTALDMGCGVASFGGSMLSENI-----LTLSFAPRDSHKAQIQFALERG----I----PAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv-----~~~~v~~vD~s~~~l~~A~erg----~----~~~~~~~d~~~LPfpd~sFD 266 (595)
...++||++||||..+..+++.-. ....++..|+++.|+..+++|. + .+.++.+|++.|||++.+||
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 346999999999999999988721 1257888999999999888763 2 37888999999999999999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+.++.+..++ ++++.|+|++|||||||+|.+..
T Consensus 180 ~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 180 AYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred eEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999999997 89999999999999999999875
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=112.71 Aligned_cols=99 Identities=26% Similarity=0.315 Sum_probs=79.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEccc-ccCCCCCCceeEEEEcC-C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGT-RRLPFPAFSFDIVHCSR-C 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~-~~LPfpd~sFDlV~~s~-v 273 (595)
.+|||+|||+|.++..++++. ....++++|+++.+++.|+++. .++.+.+.|. ..... .+.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCCc
Confidence 489999999999999999931 2347889999999999998773 4688899888 33333 35699999999 5
Q ss_pred Ccccc--cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFT--AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~--~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++. ++...++.++.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 54443 345689999999999999999975
|
... |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-12 Score=131.69 Aligned_cols=112 Identities=22% Similarity=0.331 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc--eEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL--TLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF 260 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~--~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPf 260 (595)
.+...+.+.+.++. ...+|||+|||+|.++..|++.... ...+.++|+|+.+++.|+++..++.+.++++..+|+
T Consensus 71 ~~~i~~~l~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~ 147 (272)
T PRK11088 71 RDAVANLLAERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPF 147 (272)
T ss_pred HHHHHHHHHHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCC
Confidence 33333444444432 2347999999999999999876221 246899999999999999988888899999999999
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
++++||+|++..+. ..+.|+.|+|||||+|+++.|..
T Consensus 148 ~~~sfD~I~~~~~~--------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 148 ADQSLDAIIRIYAP--------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred cCCceeEEEEecCC--------CCHHHHHhhccCCCEEEEEeCCC
Confidence 99999999986531 23689999999999999998743
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=129.37 Aligned_cols=139 Identities=20% Similarity=0.186 Sum_probs=101.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--c----CCCeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--R----GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--r----g~~~~~~~~d~~~LPfp 261 (595)
+.+...+....+ ++|||||||+|.++..++..+.. .++++|.|+.++..+.. + ...+.+...+++.+|..
T Consensus 111 ~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 445555544444 49999999999999999887653 67899999998865432 1 23456677788888764
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC-----c------------hhHHHHHHHHHHc
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ-----D------------KEWADLQAVARAL 324 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~-----~------------~~w~~l~~la~~~ 324 (595)
.+||+|+|+.+++|+. ++..+|.++.|+|||||.|++.+........ . ..-..+...+++.
T Consensus 187 -~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~a 264 (314)
T TIGR00452 187 -YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKV 264 (314)
T ss_pred -CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHC
Confidence 5899999999998886 8889999999999999999987532111000 0 0123477888899
Q ss_pred CcEEEEee
Q 007645 325 CYELIAVD 332 (595)
Q Consensus 325 ~w~~v~~~ 332 (595)
||+.+...
T Consensus 265 GF~~V~i~ 272 (314)
T TIGR00452 265 GFENFRIL 272 (314)
T ss_pred CCeEEEEE
Confidence 99887543
|
Known examples to date are restricted to the proteobacteria. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=119.97 Aligned_cols=101 Identities=29% Similarity=0.414 Sum_probs=85.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|++.-.....++++|+++.+++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 34899999999999999995322345799999999999999874 44 5899999988887 66 89999999999
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++.. ++..+++++.++|++||.+++..+
T Consensus 83 l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 83 LHHFP-DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp GGGTS-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhcc-CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 96654 778999999999999999999875
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-12 Score=124.54 Aligned_cols=101 Identities=24% Similarity=0.305 Sum_probs=87.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
..+|||+|||+|.++..+++.+. ...++++|+++.+++.++++.. ++.+...|...+++++++||+|+++.+++|. .
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~-~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWC-D 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhc-c
Confidence 35899999999999999998853 3468999999999999988753 4677888888899889999999999999555 4
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++..++.++.++|+|||.++++++
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeC
Confidence 788999999999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-12 Score=114.11 Aligned_cols=93 Identities=28% Similarity=0.395 Sum_probs=75.7
Q ss_pred EEEECCCCcHHHHHHhhcC--CceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCCCCCCceeEEEEcCC-Ccc
Q 007645 204 ALDMGCGVASFGGSMLSEN--ILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRC-LIP 276 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~g--v~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LPfpd~sFDlV~~s~v-L~h 276 (595)
|||+|||+|..+..+++.. .....+.++|+++++++.++++. .++.+.+.|..++++.+++||+|+|+.. ++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998873 11258999999999999998874 7899999999999988999999999655 877
Q ss_pred cc-cCHHHHHHHHHhhcCCCc
Q 007645 277 FT-AYNATYLIEVDRLLRPGG 296 (595)
Q Consensus 277 ~~-~d~~~~L~Ei~RvLRPGG 296 (595)
+. ++...++.++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 65 234689999999999998
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=124.35 Aligned_cols=102 Identities=21% Similarity=0.113 Sum_probs=84.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|..+..++..-.....++++|+++.+++.|+++ +. ++.+...+.+.+++++++||+|+++.+++
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 34999999999988877665522234688999999999999875 33 56778888889999989999999999886
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. +...++.++.|+|||||+|++++.
T Consensus 158 ~~~-d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 158 LSP-DKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 654 778999999999999999999764
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.9e-12 Score=122.13 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=88.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----CCCeE-EEEcccccCC-CCCCceeEEEEcCCCc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----GIPAF-VAMLGTRRLP-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g~~~~-~~~~d~~~LP-fpd~sFDlV~~s~vL~ 275 (595)
.||+||||||..-.++-.. ...+++.+|.++.|-++|.++ ...+. |++++.+++| ++++|+|.|+|..||.
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 4899999999766555432 346899999999999887654 34455 8889999998 8999999999999996
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHH
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQA 319 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~ 319 (595)
.. +++.+.|.|+.|+|||||++++.+. -..++..|..+-+
T Consensus 157 Sv-e~~~k~L~e~~rlLRpgG~iifiEH---va~~y~~~n~i~q 196 (252)
T KOG4300|consen 157 SV-EDPVKQLNEVRRLLRPGGRIIFIEH---VAGEYGFWNRILQ 196 (252)
T ss_pred cc-CCHHHHHHHHHHhcCCCcEEEEEec---ccccchHHHHHHH
Confidence 65 4899999999999999999999875 2333445766444
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=124.59 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=83.8
Q ss_pred cceEEEECCCCcHHHHHHhhcC-CceEEEEeecCcHHHHHHHHHc------CCCeEEEEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSEN-ILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~g-v~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..++++. .....++++|+|+.|++.|+++ ..++.+...|...++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 3489999999999999998762 2356899999999999999876 23568888888888875 4899999999
Q ss_pred Ccccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|+. ++...++.++.|+|+|||.|+++++
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 97765 2346899999999999999999875
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=125.40 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=82.6
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|..+..+++. ......++++|+|+.|++.|+++ +. ++.+.+.++..+|++ .+|+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 348999999999999888763 22346899999999999999876 22 577888888888765 4899999999
Q ss_pred Cccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++.. +...++.++.++|||||.|++++.
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 977652 235899999999999999999874
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-11 Score=128.17 Aligned_cols=121 Identities=23% Similarity=0.395 Sum_probs=87.9
Q ss_pred CCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--e
Q 007645 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--A 248 (595)
Q Consensus 175 ~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~ 248 (595)
...........-++.+.+.+...+|. +|||||||.|.++.+++++ .++.++++.+|++|.+.|+++ |+. +
T Consensus 39 ~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 39 GDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREAGLEDRV 114 (273)
T ss_dssp TT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCSTSSSTE
T ss_pred chhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhcCCCCce
Confidence 33334344444567788888888776 9999999999999999998 134788889999999998765 543 6
Q ss_pred EEEEcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 249 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 249 ~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+...|..+++. +||.|++..+++|+. ++...+++++.++|||||.+++..
T Consensus 115 ~v~~~D~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 115 EVRLQDYRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEeeccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 777777776653 899999999999996 466899999999999999999854
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=125.72 Aligned_cols=127 Identities=15% Similarity=0.242 Sum_probs=92.8
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
+|||+|||+|.++.+|++++. .++++|+|+.+++.++++ ++++.+...|....++ +++||+|+++.++++..
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~ 198 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFLN 198 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhCC
Confidence 899999999999999998864 788999999999887654 6667777777766555 67899999999997764
Q ss_pred -cCHHHHHHHHHhhcCCCcEEEEEcCCC--CCC--CC---chhHHHHHHHHHHcCcEEEEeecce
Q 007645 279 -AYNATYLIEVDRLLRPGGYLVISGPPV--QWP--KQ---DKEWADLQAVARALCYELIAVDGNT 335 (595)
Q Consensus 279 -~d~~~~L~Ei~RvLRPGG~lvls~p~~--~~~--~~---~~~w~~l~~la~~~~w~~v~~~~~~ 335 (595)
++...++.++.++|+|||++++..... ... .. ...-.++.+..+ +|+++......
T Consensus 199 ~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~~e~~ 261 (287)
T PRK12335 199 RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKYNENV 261 (287)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEEeccc
Confidence 345689999999999999977754211 000 00 011334666665 48888664433
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=121.74 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=82.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-c
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-A 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~ 279 (595)
..+|||+|||+|.++..|++.. ....++++|+|+.+++.|+++...+.+.++++.. |+++++||+|+|..+++|+. +
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence 3489999999999999998762 2357999999999999999876667777888777 88999999999999999986 2
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...++.++.|++ ++++++.+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEe
Confidence 3468899999998 567877653
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=120.00 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=94.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
+|||||||+|.++..+++.. ....++++|+|+.+++.|+++ +. .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 79999999999999998763 234788999999999998875 23 357777777666665 58999999999988
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCC-CCCCc--------hhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQ-WPKQD--------KEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~~~~~--------~~w~~l~~la~~~~w~~v~~ 331 (595)
+. +...++.++.++|||||++++.++... +.... ..-..+.+++++.+++.+..
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 75 788999999999999999999875221 11110 01234556667777777644
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-12 Score=113.59 Aligned_cols=92 Identities=30% Similarity=0.371 Sum_probs=59.7
Q ss_pred EEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCC--CCCCceeEEEEcCCCccc
Q 007645 205 LDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 205 LDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~h~ 277 (595)
||||||+|.++..+++.. ....++++|+|+.+++.|+++ . .............. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999884 667999999999999777655 2 22233333322221 122699999999999888
Q ss_pred ccCHHHHHHHHHhhcCCCcEE
Q 007645 278 TAYNATYLIEVDRLLRPGGYL 298 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~l 298 (595)
++...+++.+.++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 68899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=115.57 Aligned_cols=117 Identities=21% Similarity=0.204 Sum_probs=92.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|.++..++.+. ....++++|.++.+++.|+++ +. ++.+...+...++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 3489999999999999888752 345899999999999888764 44 37888888887776 779999998742
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.+...++.++.++|||||++++.... ..-..+.++++..+|.+...
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~-------~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGR-------DPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCC-------ChHHHHHHHHHhcCceEeee
Confidence 25678999999999999999998642 11235788889999987654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=126.55 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=82.9
Q ss_pred cceEEEECCCCcH----HHHHHhhcCC----ceEEEEeecCcHHHHHHHHHcC---------------------------
Q 007645 201 LRTALDMGCGVAS----FGGSMLSENI----LTLSFAPRDSHKAQIQFALERG--------------------------- 245 (595)
Q Consensus 201 ~r~VLDIGCGtG~----~a~~La~~gv----~~~~v~~vD~s~~~l~~A~erg--------------------------- 245 (595)
..+|+|+|||+|. ++..|++... ....+.++|+|+.+++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4589999999994 5666665422 2468999999999999998742
Q ss_pred -----CCeEEEEcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 246 -----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 246 -----~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+.|.+.|+...++++++||+|+|.++|+|+. ++...++.++.++|+|||+|++...
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 136777888888887789999999999998886 2345899999999999999999653
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=114.27 Aligned_cols=115 Identities=23% Similarity=0.231 Sum_probs=92.6
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcccccCCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d~~~LPfpd 262 (595)
+.+.+.+.+.... ..+|||+|||+|.++..+++.......++++|+++.+++.++++.. ++.+...++..+++++
T Consensus 27 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 27 WRRRAVKLIGVFK--GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHHHHHhccCC--CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 3444555554433 3489999999999999998875432578999999999999988642 4677788888888888
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+++.++++.. +...+++++.++|+|||++++.+.
T Consensus 105 ~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8999999999987665 788999999999999999998764
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=114.88 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=91.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRLP 259 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~LP 259 (595)
+...+.+.+.... ..+|||+|||+|.++..++........+.++|+++.+++.++++. .++.+...+...++
T Consensus 39 ~~~~~~~~~~~~~--~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 39 WRRKTIKWLGVRP--GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHhCCCC--CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 3344444444333 348999999999999999887532358899999999999998762 34677888888888
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|+++.+++++. +...++.++.++|+|||.+++.+.
T Consensus 117 ~~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEEe
Confidence 8788999999999997765 788999999999999999998764
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=123.43 Aligned_cols=119 Identities=19% Similarity=0.324 Sum_probs=95.4
Q ss_pred cccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEE
Q 007645 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVA 251 (595)
Q Consensus 178 ~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~ 251 (595)
........-++.+.+.+.+.+|. +|||||||.|.++.+++++ ..+.++++++|++|.+.++++ |.+ +.+.
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEE--YGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHH--cCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 34343444577888888888877 9999999999999999998 135788899999999988774 554 5555
Q ss_pred EcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 252 MLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 252 ~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..|...+. +.||-|++..+++|+. ++...++..+.++|+|||.+++.+.
T Consensus 128 l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 128 LQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 55555443 4599999999999997 4578999999999999999998764
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.1e-11 Score=136.02 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=84.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC--CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..+++.. ....++++|+|+.|++.|+++ +.+..+.++|...+| +++++||+|+++.+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 489999999999998888763 456899999999999998875 345677778888887 8889999999999987
Q ss_pred ccc------------cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFT------------AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~------------~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. ++...+|+++.|+|||||.+++.+.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 653 2456899999999999999999864
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-11 Score=127.37 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=88.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd 262 (595)
..++.+.+.+...++. +|||||||+|.++..++++. ...++++|+|+++++.|+++. ..+.+...+...+ +
T Consensus 154 ~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~ 226 (383)
T PRK11705 154 AKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---N 226 (383)
T ss_pred HHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---C
Confidence 3355566666665554 99999999999999998762 247899999999999999874 4456666666554 4
Q ss_pred CceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||.|++..+++|.. .+...++.++.++|||||++++.+.
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 7899999999998875 3457899999999999999999764
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=115.31 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=90.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEccc-ccCC--CCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGT-RRLP--FPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~-~~LP--fpd~sFDlV~~s~ 272 (595)
..+|||+|||+|.++..|++.. ....++++|+++.+++.|+++ + .++.+.+.++ ..++ +++++||+|++++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 3489999999999999998763 345799999999999988764 3 3578888888 7776 7788999999987
Q ss_pred CCccccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 273 CLIPFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 273 vL~h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
.. +|.. ....++.++.++|||||+|+++.+. ...-..+.+.+++.+|...
T Consensus 120 ~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~------~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW------EGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC------HHHHHHHHHHHHhCccccc
Confidence 65 3321 1367899999999999999998741 1112235555665666443
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=111.99 Aligned_cols=105 Identities=25% Similarity=0.347 Sum_probs=83.3
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-CCCCCceeE
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-PFPAFSFDI 267 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-Pfpd~sFDl 267 (595)
.|.++++. ++ +|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++.-..++. .| .|++++||.
T Consensus 6 ~I~~~I~p--gs--rVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWIEP--GS--RVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDY 78 (193)
T ss_pred HHHHHcCC--CC--EEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccE
Confidence 45555543 33 9999999999999999885 23467788999999999999999855444333 34 499999999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
|+++.+|.++. ++..+|.|+.|+ |...+++-|+
T Consensus 79 VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 79 VILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred EehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecC
Confidence 99999998886 789999999777 6677887773
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-11 Score=120.10 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=80.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-------C----eEEEEcccccCCCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-------P----AFVAMLGTRRLPFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-------~----~~~~~~d~~~LPfpd~sFDlV~ 269 (595)
.++|||+|||+|.++..|++.|. +++++|.++.+++.|++..- + ..+.+.+.+.+. +.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceee
Confidence 46899999999999999999874 78999999999999988611 1 223333344332 4599999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
|+.+++|+. |+..++..+.+.|||||.+++++-..
T Consensus 164 csevleHV~-dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 164 CSEVLEHVK-DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred eHHHHHHHh-CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999996 89999999999999999999998633
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-10 Score=114.61 Aligned_cols=140 Identities=19% Similarity=0.243 Sum_probs=101.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC-CC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP-FP 261 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP-fp 261 (595)
++.+...+.... ..+|||||||+|.++..+++.+ ..++++|+++.+++.|+++ +....+...+....+ ..
T Consensus 37 ~~~l~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 37 LNYIREHAGGLF--GKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEH 111 (233)
T ss_pred HHHHHHhccCCC--CCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhc
Confidence 444444443333 3489999999999999998875 3688899999999988865 445566666665554 34
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC-----------------Cch------hHHHHH
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK-----------------QDK------EWADLQ 318 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~-----------------~~~------~w~~l~ 318 (595)
++.||+|+++.+++|.. +...+|.++.++|+|||.++++.+...... ... .-..+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELA 190 (233)
T ss_pred CCCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHH
Confidence 57899999999998776 788999999999999999999875321110 000 112467
Q ss_pred HHHHHcCcEEEEee
Q 007645 319 AVARALCYELIAVD 332 (595)
Q Consensus 319 ~la~~~~w~~v~~~ 332 (595)
+++++.+++.+...
T Consensus 191 ~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 191 AWLRQAGLEVQDIT 204 (233)
T ss_pred HHHHHCCCeEeeee
Confidence 78888888887553
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3e-10 Score=113.12 Aligned_cols=144 Identities=19% Similarity=0.246 Sum_probs=101.3
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----C--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~--~~~~~~~d~~ 256 (595)
...+.+.+.+.++....+..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++. . ++.+.+.++.
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34445556666552122345899999999999999998743 7889999999999998762 2 5678888877
Q ss_pred cCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcCCC----------CCCCCc-------hhHHHHH
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPPV----------QWPKQD-------KEWADLQ 318 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~----------~~~~~~-------~~w~~l~ 318 (595)
.++ ++||+|++..+++|+. ++...++.++.+++++++++.+..... .+.... ..-+.+.
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 765 7899999999998875 345688999999999877766542210 011000 0134577
Q ss_pred HHHHHcCcEEEEee
Q 007645 319 AVARALCYELIAVD 332 (595)
Q Consensus 319 ~la~~~~w~~v~~~ 332 (595)
+++++.+|+.+..+
T Consensus 192 ~~l~~~Gf~v~~~~ 205 (219)
T TIGR02021 192 RALGELGWKIVREG 205 (219)
T ss_pred HHHHHcCceeeeee
Confidence 78888888887653
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=113.67 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=78.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH-cC----------------CCeEEEEcccccCCCC-CC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-RG----------------IPAFVAMLGTRRLPFP-AF 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e-rg----------------~~~~~~~~d~~~LPfp-d~ 263 (595)
.+|||+|||.|..+..|+++|. +|+++|+|+.+++.+.+ ++ ..+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 3899999999999999999876 68888999999998533 33 3466778888777642 46
Q ss_pred ceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 264 SFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.||.|+...+++|++.+ ...++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 79999999888888743 3578999999999999866653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-10 Score=111.10 Aligned_cols=139 Identities=16% Similarity=0.286 Sum_probs=93.1
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH----HHcCCCeEEEEcccccCCCCCCce
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA----LERGIPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A----~erg~~~~~~~~d~~~LPfpd~sF 265 (595)
+.+.++...+ .++||+|||.|..+.+|+++|. +|+++|.|+..++.+ .+.++++...+.|.....++ +.|
T Consensus 22 v~~a~~~~~~--g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~y 95 (192)
T PF03848_consen 22 VLEAVPLLKP--GKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEY 95 (192)
T ss_dssp HHHHCTTS-S--SEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTE
T ss_pred HHHHHhhcCC--CcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCc
Confidence 4444444333 3899999999999999999987 677889999887654 45688888889998877775 689
Q ss_pred eEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCc-h--hH--HHHHHHHHHcCcEEEEeeccee
Q 007645 266 DIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP--PVQWPKQD-K--EW--ADLQAVARALCYELIAVDGNTV 336 (595)
Q Consensus 266 DlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~-~--~w--~~l~~la~~~~w~~v~~~~~~~ 336 (595)
|+|++..++.++. +....++..+...++|||++++.+. ...+.... . .+ .+|..... +|+++..+.++-
T Consensus 96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~y~E~~g 172 (192)
T PF03848_consen 96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILKYNEDVG 172 (192)
T ss_dssp EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEEEEEEEE
T ss_pred CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEEEEcccc
Confidence 9999988887766 3345789999999999999998542 11111111 0 12 12444444 799987655443
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.7e-10 Score=106.82 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=89.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||+|||+|.++..+++.+. .+.++|+++.+++.++++ +..+.+...|....+ .++||+|+++..+++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 3799999999999999998854 788999999999988875 455667777765543 4589999999877655
Q ss_pred ccC--------------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 278 TAY--------------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 278 ~~d--------------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
... ...++.++.|+|+|||.+++..+... .-..+.+.+++.+|+....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------GEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------ChHHHHHHHHhCCCeEEEE
Confidence 321 24679999999999999999875211 1235667777778876644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=113.39 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=77.8
Q ss_pred cceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|.++..|++. ......++++|+++.+++.|+++. .++.+.+.+...+++++++||+|+|+.+++
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 458999999999998888753 122358999999999999998873 235566666677777788999999999998
Q ss_pred ccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 276 PFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 276 h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
|+.++ ...+++++.|++| |.+++.+
T Consensus 141 h~~d~~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLDDAEVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCChHHHHHHHHHHHHhcC--eeEEEec
Confidence 88632 3479999999998 5555544
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-09 Score=117.91 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=156.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--..
T Consensus 140 ~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCCC
Confidence 489999999999999888762 335788999999999999876 43 35666666432 23457899999954222
Q ss_pred cc--------------c-------cC----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 PF--------------T-------AY----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 h~--------------~-------~d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.. + .+ ...++.++.++|+|||.+++... . ..-+.+.+++++.+|+.+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig---~----~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG---F----KQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC---C----chHHHHHHHHHhcCCCceE
Confidence 10 0 00 12467788999999999998642 1 1123567777777775443
Q ss_pred eecceeEeeccCCcccccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCcccccccc
Q 007645 331 VDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPSRALVMKN 410 (595)
Q Consensus 331 ~~~~~~iw~K~~~~~c~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~~~~~~~~ 410 (595)
...|.. . ..|.....+.+-... |..-+.- ++..... . ..-.-||..+ +
T Consensus 291 ~~~D~~-------g---~~R~v~~~~~~~~rs------~~rr~g~--~~~~~q~-~--~~e~~~p~~~-----------i 338 (506)
T PRK01544 291 VYKDLQ-------G---HSRVILISPINLNRS------YARRIGK--SLSGVQQ-N--LLDNELPKYL-----------F 338 (506)
T ss_pred EEecCC-------C---CceEEEeccccCCcc------eeccCCC--CCCHHHH-H--HHHhhhhhhC-----------C
Confidence 321110 0 000000011111000 1000000 0000000 0 0011122222 1
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC--C--eEEEEeccCCCCCchhHHhhccc
Q 007645 411 GYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--P--VWVMNVVPARKSSTLSVIYDRGL 486 (595)
Q Consensus 411 ~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~--~--vwvmnv~p~~~~~~l~~i~eRGl 486 (595)
+.+ + +-...=..++|+|||.|.|.+.+... + +.-|=+-....-..+.-+.++||
T Consensus 339 ~~e-----------------k-----lf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l 396 (506)
T PRK01544 339 SKE-----------------K-----LVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI 396 (506)
T ss_pred CHH-----------------H-----hCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC
Confidence 110 0 11223588999999999999998433 2 22222221111134455667775
Q ss_pred hhhhcccCCCC----CCCC-CccchhhccCccc-cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHH
Q 007645 487 IGVYHDWCEPF----STYP-RTYDLIHVSGIES-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSR 559 (595)
Q Consensus 487 ig~~~~wce~f----~typ-rtyDl~H~~~~~s-~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~ 559 (595)
-.+. -.|..+ .-+| .+.|-|| =.|. +|....-.+.|=--...|-+|-|+|+|||.+-++ |..+..+.+.+
T Consensus 397 ~N~~-~~~~~~~~~~~~~~~~sv~~i~--i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 397 TNFL-LFPNNLDLILNDLPNNSLDGIY--ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIE 473 (506)
T ss_pred CeEE-EEcCCHHHHHHhcCcccccEEE--EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 2221 122222 2245 6777766 2232 2321111344544558999999999999988886 66666666555
Q ss_pred hH
Q 007645 560 IA 561 (595)
Q Consensus 560 ~~ 561 (595)
..
T Consensus 474 ~~ 475 (506)
T PRK01544 474 LI 475 (506)
T ss_pred HH
Confidence 43
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=1e-09 Score=98.01 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=80.9
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LPf 260 (595)
...+.+.+....+. +|||+|||+|.++..++++.. ...++++|+++.+++.++++ +. ++.+...+... ++.
T Consensus 8 ~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 8 RALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred HHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 34455555544433 899999999999999998732 25789999999999988754 32 45666666543 333
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...+||.|++..... ....++.++.+.|+|||+|++..
T Consensus 85 ~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 346899999977552 34588999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-10 Score=109.78 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=77.0
Q ss_pred CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 199 GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 199 g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
+..+++||+|||.|.++..|+.+ .-.+..+|+++.+++.|++|- .++.+.+.+.... .|+++||+||++.++.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLY 117 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GG
T ss_pred cccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhH
Confidence 34668999999999999999998 347889999999999999983 4588888887554 4789999999999997
Q ss_pred cccc--CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 276 PFTA--YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 276 h~~~--d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+.+ +...++..+...|+|||.+++-.
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 6652 34578999999999999999975
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=114.18 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=81.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++..+. ..+.++|+++.+++.|+++ +.. ..+...+ ..+..+++||+|+++....
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccccCCCceEEEEecCHH
Confidence 4899999999999988887754 3788999999999999876 332 2223322 2334567999999976432
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
....++.++.++|||||++++++.. ......+.+.+++. |+.+.
T Consensus 237 ----~l~~ll~~~~~~LkpgG~li~sgi~------~~~~~~v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 237 ----VIKELYPQFSRLVKPGGWLILSGIL------ETQAQSVCDAYEQG-FTVVE 280 (288)
T ss_pred ----HHHHHHHHHHHHcCCCcEEEEEeCc------HhHHHHHHHHHHcc-Cceee
Confidence 3357899999999999999998751 11233455555554 66553
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.4e-10 Score=111.18 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=72.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..++++......+.++|+++ + ....++.+.++|+...+ +.+++||+|+|..+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~ 126 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMA 126 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence 4899999999999999988743345788999987 2 12235778888877643 66789999999876
Q ss_pred CcccccCH-----------HHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFTAYN-----------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~~d~-----------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ++..++ ..+|.++.++|||||.|++..
T Consensus 127 ~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 127 P-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred C-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5 333221 358999999999999999975
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=115.65 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=76.0
Q ss_pred HHHHHHHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----------CCeEEEEc
Q 007645 185 KYIDKLKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------IPAFVAML 253 (595)
Q Consensus 185 ~yi~~L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------~~~~~~~~ 253 (595)
..++.+.+.+... .....+|||+|||+|.++..|++++. .++++|+|+.|++.|+++. ..+.+...
T Consensus 128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~ 204 (315)
T PLN02585 128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN 204 (315)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence 3344455555432 11234899999999999999998854 7889999999999998762 23456666
Q ss_pred ccccCCCCCCceeEEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEE
Q 007645 254 GTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 254 d~~~LPfpd~sFDlV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls 301 (595)
|...+ +++||+|+|..+++|++++. ..++..+.+ +.+||.++..
T Consensus 205 Dl~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~ 249 (315)
T PLN02585 205 DLESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISF 249 (315)
T ss_pred chhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEe
Confidence 65443 57899999999999987432 245555554 4566554433
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=105.35 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=74.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+|||+|||+|.++..++... ....++++|.++.+++.++++ +. ++.+..+++..++ .+++||+|+|.. +.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~~- 119 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-LA- 119 (181)
T ss_pred CeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-hh-
Confidence 489999999999999887653 235789999999988877643 44 4788888887764 357999999865 32
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+...++..+.++|+|||.+++..
T Consensus 120 ---~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 120 ---SLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ---CHHHHHHHHHHhcCCCCEEEEEc
Confidence 45678899999999999999874
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-10 Score=113.99 Aligned_cols=129 Identities=16% Similarity=0.243 Sum_probs=91.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCe------EEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPA------FVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~------~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
.+.++|+|||+|..+..+++. . -.|.+.|+|++|++.|++.-... .....+...|--.++|.|+|+|..|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~-~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH-Y--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred cceEEEeccCCCcchHHHHHh-h--hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 448999999999666666665 2 36788999999999998764322 11112223333338999999999999
Q ss_pred cccccCHHHHHHHHHhhcCCCc-EEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEeeccCCc
Q 007645 275 IPFTAYNATYLIEVDRLLRPGG-YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE 344 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG-~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw~K~~~~ 344 (595)
||. |.+.+++++.|+||+.| .+++-. +.+....|.+...+..+.+|+ ..+.|+.+..+
T Consensus 111 -HWF-dle~fy~~~~rvLRk~Gg~iavW~----Y~dd~v~~pE~dsv~~r~~~~------~~p~~r~~~~n 169 (261)
T KOG3010|consen 111 -HWF-DLERFYKEAYRVLRKDGGLIAVWN----YNDDFVDWPEFDSVMLRLYDS------TLPYWRSPLRN 169 (261)
T ss_pred -Hhh-chHHHHHHHHHHcCCCCCEEEEEE----ccCCCcCCHHHHHHHHHHhhc------cCchhhhHHHH
Confidence 998 78999999999998866 666632 222223488888888888887 35566555544
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-10 Score=109.64 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=99.4
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-ccCCCCCCc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-RRLPFPAFS 264 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-~~LPfpd~s 264 (595)
..+.-.+++.+..+...-|||||||+|..+..|.+.|. ...++|+|+.|++.|.++-+...+...|+ +-+||..++
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGt 112 (270)
T KOG1541|consen 36 MAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGT 112 (270)
T ss_pred HHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCc
Confidence 34455566666655567899999999999999998874 67889999999999998766655555553 789999999
Q ss_pred eeEEEEcCCCccccc-------CHH----HHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 265 FDIVHCSRCLIPFTA-------YNA----TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 265 FDlV~~s~vL~h~~~-------d~~----~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
||.|++..++ .|.- ++. .++..++.+|++|+..++.- +...+..-+.+...+.+.+|
T Consensus 113 FDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf----Ypen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 113 FDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF----YPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred cceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe----cccchHHHHHHHHHHHhhcc
Confidence 9999998777 5552 222 56777999999999999974 44444445555566655554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-09 Score=101.91 Aligned_cols=112 Identities=18% Similarity=0.262 Sum_probs=80.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd 262 (595)
..|.+.+.... ..+|||+|||+|.++..++++.. ...++.+|+++.+++.++++ +.. +.+...|... +.++
T Consensus 21 ~lL~~~l~~~~--~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~ 96 (170)
T PF05175_consen 21 RLLLDNLPKHK--GGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPD 96 (170)
T ss_dssp HHHHHHHHHHT--TCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCT
T ss_pred HHHHHHHhhcc--CCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccc
Confidence 34444444433 33899999999999999998854 34688999999999998764 555 6777776543 2347
Q ss_pred CceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|+--++.-.. ....++.++.+.|+|||.+++...
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 89999999976633221 135789999999999999988754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-09 Score=108.46 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=81.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L 258 (595)
.....+.+.+....+. +|||+|||+|..+..|++.-.....++++|+++++++.|+++ +. .+.+...|....
T Consensus 59 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred HHHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 4455566666554444 899999999999988887622223788999999999988764 43 267777777654
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....++||+|++..++.+++ .++.++|+|||++++..
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 44567999999998875543 47889999999998864
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.8e-09 Score=113.72 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=96.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd 262 (595)
.+.+.+.++..... +|||+|||+|.++..++++.. ...++++|+++.+++.|+++ ++...+...|... ..+
T Consensus 185 t~lLl~~l~~~~~g--~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~ 259 (342)
T PRK09489 185 SQLLLSTLTPHTKG--KVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIK 259 (342)
T ss_pred HHHHHHhccccCCC--eEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccC
Confidence 34445555543322 799999999999999998743 34789999999999988753 5555666655433 235
Q ss_pred CceeEEEEcCCCcccc----cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEe
Q 007645 263 FSFDIVHCSRCLIPFT----AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIW 338 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~----~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw 338 (595)
+.||+|+|+..++... .....++.++.+.|||||.|+++.+. ...+. ..+++.+. ..+.+.+.....+|
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~---~l~y~--~~l~~~Fg--~~~~la~~~~f~v~ 332 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA---FLPYP--DLLDETFG--SHEVLAQTGRFKVY 332 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC---CCChH--HHHHHHcC--CeEEEEeCCCEEEE
Confidence 7899999998885422 13468899999999999999998751 11121 12333443 34666666667666
Q ss_pred e
Q 007645 339 K 339 (595)
Q Consensus 339 ~ 339 (595)
+
T Consensus 333 ~ 333 (342)
T PRK09489 333 R 333 (342)
T ss_pred E
Confidence 4
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-09 Score=103.91 Aligned_cols=88 Identities=25% Similarity=0.271 Sum_probs=70.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc-C-CCCCCceeEEEEcCCCccccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR-L-PFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~-L-Pfpd~sFDlV~~s~vL~h~~~ 279 (595)
.+|||+|||+|.++..+++.. ...+.++|+++++++.|+++++ .+.+.++.. + ++++++||+|+|+.+++|..
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~- 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGV--NVIQGDLDEGLEAFPDKSFDYVILSQTLQATR- 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCC--eEEEEEhhhcccccCCCCcCEEEEhhHhHcCc-
Confidence 389999999999999987652 2356789999999999988764 455566544 4 47788999999999997775
Q ss_pred CHHHHHHHHHhhcCC
Q 007645 280 YNATYLIEVDRLLRP 294 (595)
Q Consensus 280 d~~~~L~Ei~RvLRP 294 (595)
++..+|+++.|++++
T Consensus 90 d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 NPEEILDEMLRVGRH 104 (194)
T ss_pred CHHHHHHHHHHhCCe
Confidence 788999999888764
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-09 Score=107.73 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=79.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC---CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP---FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP---fpd~sFDlV~~s~v 273 (595)
.++||||||+|.++..++.+.. ...+.++|+++.+++.|+++ ++ ++.++..|+..++ +++++||.|++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 3899999999999999998743 45889999999999888654 33 5788888876653 56679999998875
Q ss_pred CcccccCH--------HHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYN--------ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. +|.... ..++.++.|+|||||.|++.+.
T Consensus 97 d-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 97 D-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 554221 4689999999999999999864
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-09 Score=105.37 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=97.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCC-CCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP-AFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfp-d~sFDlV~~s~vL 274 (595)
..+|||+|||+|.++..+++.+. .++++|.++.+++.++++ +. ++.+...+...++.. .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 45899999999999999887653 588899999999988764 34 467777777666544 3789999999999
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----------------C-------chhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------------Q-------DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----------------~-------~~~w~~l~~la~~~~w~~v~~ 331 (595)
+|.. ++..++.++.++|+|||+++++++...... . ......+.+++++.+++++..
T Consensus 123 ~~~~-~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~ 201 (224)
T TIGR01983 123 EHVP-DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDV 201 (224)
T ss_pred HhCC-CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeee
Confidence 7765 888999999999999999998875321100 0 001234777888888888765
Q ss_pred ec
Q 007645 332 DG 333 (595)
Q Consensus 332 ~~ 333 (595)
++
T Consensus 202 ~~ 203 (224)
T TIGR01983 202 KG 203 (224)
T ss_pred ee
Confidence 43
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.1e-09 Score=107.76 Aligned_cols=96 Identities=15% Similarity=0.078 Sum_probs=76.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH-HcCC----------------CeEEEEcccccCCCC-CC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL-ERGI----------------PAFVAMLGTRRLPFP-AF 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~-erg~----------------~~~~~~~d~~~LPfp-d~ 263 (595)
.+|||+|||.|..+..|+++|. +|+++|+|+.+++.+. ++++ .+.+.++|+..++.. .+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3899999999999999999876 7888999999999763 4443 356677787776533 25
Q ss_pred ceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEE
Q 007645 264 SFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvl 300 (595)
.||+|+-..+++|++.+ ...++..+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 89999999988888733 35899999999999997554
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=107.56 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=81.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..++..+.. .+.++|+++.+++.|+++ ++...+ .++..+.+||+|+|+...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH--
Confidence 458999999999999888877643 588999999999998876 221111 122222379999997533
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.....++.++.++|||||++++++... .....+.+.+++.+|+.+..
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~------~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILE------EQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcH------hhHHHHHHHHHHCCCEEEEE
Confidence 123578899999999999999987421 12345677788888987654
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=105.12 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=89.5
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEccccc----CCCCCCc
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRR----LPFPAFS 264 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~----LPfpd~s 264 (595)
+.++...+. +|||+|||+|.++..|++... ...+.++|+++.|++.+.++ ..++.+...|... .+++ .+
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~ 141 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EK 141 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-cc
Confidence 346666655 999999999999999988732 34788999999888755433 1356667777643 1223 56
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC--CCCCCCchh-HHHHHHHHHHcCcEEEEee
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP--VQWPKQDKE-WADLQAVARALCYELIAVD 332 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~--~~~~~~~~~-w~~l~~la~~~~w~~v~~~ 332 (595)
||+|++.... +.....++.++.|+|||||+++++.+. ..|...... .+...+.+++.+|+.+...
T Consensus 142 ~D~i~~d~~~---p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 142 VDVIYQDVAQ---PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred CCEEEECCCC---hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9999965321 112245689999999999999997541 233332222 3334577778899887553
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-09 Score=100.42 Aligned_cols=127 Identities=12% Similarity=0.031 Sum_probs=91.1
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~ 263 (595)
.+.+.+....+ .+|||+|||+|.++..++++. ....++++|+++.+++.|+++ +. ++.+...+.. .++ .+
T Consensus 22 ~~~~~l~~~~~--~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~-~~ 96 (187)
T PRK08287 22 LALSKLELHRA--KHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IEL-PG 96 (187)
T ss_pred HHHHhcCCCCC--CEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhc-Cc
Confidence 34455544443 489999999999999998874 335789999999999988764 32 3566665543 233 36
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+||+|++..... ....++.++.++|+|||++++.... .....++.+++++.+|+.+.
T Consensus 97 ~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~~~------~~~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 97 KADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTFIL------LENLHSALAHLEKCGVSELD 153 (187)
T ss_pred CCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEEec------HhhHHHHHHHHHHCCCCcce
Confidence 899999986542 3466889999999999999986421 12245677788888886543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=111.81 Aligned_cols=137 Identities=23% Similarity=0.232 Sum_probs=97.2
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHc-CCCe--EEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALER-GIPA--FVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~er-g~~~--~~~~~d~~~LPfpd 262 (595)
.+...++...|+ +|||||||.|.++..|+.+|.. .+.|+|.+.-..-+ +++- +... ...-..++.+|. .
T Consensus 106 rl~p~l~~L~gk--~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 106 RLLPHLPDLKGK--RVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-L 180 (315)
T ss_pred HHHhhhCCcCCC--EEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-c
Confidence 455566544444 9999999999999999999764 67788887654332 2222 3332 233357888987 7
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC-------------CCCCCc----hhHHHHHHHHHHcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV-------------QWPKQD----KEWADLQAVARALC 325 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~-------------~~~~~~----~~w~~l~~la~~~~ 325 (595)
++||+|+|..||.|.. ++-..|.++...|+|||.+++.+--. +...++ ..-..|...+++.+
T Consensus 181 ~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g 259 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAG 259 (315)
T ss_pred CCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence 8999999999999986 88999999999999999999754211 111111 01345888888888
Q ss_pred cEEEEe
Q 007645 326 YELIAV 331 (595)
Q Consensus 326 w~~v~~ 331 (595)
|+-+..
T Consensus 260 F~~v~~ 265 (315)
T PF08003_consen 260 FKDVRC 265 (315)
T ss_pred CceEEE
Confidence 877644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-10 Score=113.44 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=99.7
Q ss_pred CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-C-CCCCceeEEEEcCCCcc
Q 007645 199 GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-P-FPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 199 g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-P-fpd~sFDlV~~s~vL~h 276 (595)
+..+++||+|||||.++..|... +-.++++|+|++|++.|.++++--.+.+.++..+ + ..++.||+|++..||..
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y 200 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPY 200 (287)
T ss_pred CccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHh
Confidence 33679999999999999999876 3478899999999999999987555555554432 2 45678999999999955
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchh-------HHHHHHHHHHcCcEEEEeecc
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKE-------WADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~-------w~~l~~la~~~~w~~v~~~~~ 334 (595)
+- +.+.++.-+...|+|||.|.+|.- +..|...-.+ -.-+..+.+..+++++..+..
T Consensus 201 lG-~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 201 LG-ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred hc-chhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecc
Confidence 54 788999999999999999999874 2222111111 112677888889999877554
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.1e-09 Score=103.27 Aligned_cols=93 Identities=25% Similarity=0.277 Sum_probs=71.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
..+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ +. .+.+...+ ++..+++||+|++..++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchh
Confidence 34899999999999999998754 588999999999999876 22 35666665 44456889999999999
Q ss_pred cccc-cCHHHHHHHHHhhcCCCcEEE
Q 007645 275 IPFT-AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 275 ~h~~-~d~~~~L~Ei~RvLRPGG~lv 299 (595)
+|+. ++...++.++.+++++++.+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 8876 234577888888775544433
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=102.10 Aligned_cols=119 Identities=17% Similarity=0.141 Sum_probs=84.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||+|||+|.++..++..+. ..++++|+++.+++.++++ +.++.+...|... .+++++||+|+++....+-
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 4899999999999999988643 3788999999999987764 4556677766654 3456899999997543221
Q ss_pred cc--------------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 278 TA--------------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 278 ~~--------------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
.. ....++.++.++|||||.+++...... ....+.+.+++.+|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~------~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS------GVERTLTRLSEAGLDAE 180 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc------CHHHHHHHHHHCCCCeE
Confidence 11 024578889999999999998754221 23345555666666543
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=105.47 Aligned_cols=110 Identities=12% Similarity=0.045 Sum_probs=83.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
......+.+.+....+. +|||||||+|.++..|++..-....++++|+++.+++.|+++ +. ++.+...|....
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 44555566666655554 999999999999998887632234788999999999998875 33 477888887665
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
..+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 140 ~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 140 YEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 5567899999998766443 245677899999999864
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.3e-09 Score=106.53 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=107.3
Q ss_pred eeecCCCCCcccccHHHH-HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---
Q 007645 169 YFTFPGGGTMFADGADKY-IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--- 244 (595)
Q Consensus 169 ~~~fp~~g~~F~~~a~~y-i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--- 244 (595)
-++|......|....-.+ .+.|.+.++...+. +|||+|||.|.++..|++... ...++-+|++..+++.|+++
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHH
Confidence 344444455555444333 45677777766555 899999999999999999965 56888899999999999875
Q ss_pred -CCCe-EEEEcccccCCCCCCceeEEEEcCCCcccccCHH----HHHHHHHhhcCCCcEEEEEcCCCCCCCCchh-HHHH
Q 007645 245 -GIPA-FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA----TYLIEVDRLLRPGGYLVISGPPVQWPKQDKE-WADL 317 (595)
Q Consensus 245 -g~~~-~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~----~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~-w~~l 317 (595)
++.. .+...+. -.+..+ +||+|+|+--|+.-.+-.. .++.+..+.|++||.|+|+.. .... -..|
T Consensus 205 N~~~~~~v~~s~~-~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan------~~l~y~~~L 276 (300)
T COG2813 205 NGVENTEVWASNL-YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN------RHLPYEKKL 276 (300)
T ss_pred cCCCccEEEEecc-cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc------CCCChHHHH
Confidence 4444 3444333 234444 9999999988854332222 789999999999999999975 1222 2235
Q ss_pred HHHHHHcCcEEEEeecceeEee
Q 007645 318 QAVARALCYELIAVDGNTVIWK 339 (595)
Q Consensus 318 ~~la~~~~w~~v~~~~~~~iw~ 339 (595)
++++. .-+.+.+.....|++
T Consensus 277 ~~~Fg--~v~~la~~~gf~Vl~ 296 (300)
T COG2813 277 KELFG--NVEVLAKNGGFKVLR 296 (300)
T ss_pred HHhcC--CEEEEEeCCCEEEEE
Confidence 55554 345566655555543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-09 Score=97.13 Aligned_cols=100 Identities=28% Similarity=0.449 Sum_probs=79.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--fpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..+++.+ ...++++|+++..++.|+.+ +. ++.+.+.|...+. +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 389999999999999999986 45899999999999999876 22 5788898877664 77899999999877
Q ss_pred Cccccc-------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTA-------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~-------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..... ....+++++.++|||||.+++..|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 754321 124789999999999999999865
|
... |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-09 Score=114.14 Aligned_cols=99 Identities=20% Similarity=0.313 Sum_probs=80.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC--CCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL--PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L--Pfpd~sFDlV~~s~vL 274 (595)
..+||||||+|.++..++.+. ....+.|+|+++.+++.|.++ ++ ++.+..+|+..+ .++++++|.|++++..
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd 202 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV 202 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence 389999999999999999985 345889999999998877654 44 577788887654 5788999999998754
Q ss_pred cccccCH------HHHHHHHHhhcCCCcEEEEEc
Q 007645 275 IPFTAYN------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 275 ~h~~~d~------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+|+... ..++.++.|+|+|||.+.+.+
T Consensus 203 -PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 203 -PWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred -CccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 665322 478999999999999999986
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.6e-09 Score=112.56 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred CeeecCCCCCcccccHHHH-HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--
Q 007645 168 PYFTFPGGGTMFADGADKY-IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-- 244 (595)
Q Consensus 168 ~~~~fp~~g~~F~~~a~~y-i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-- 244 (595)
..+.+......|....-.. .+.+.+.++...+ .+|||+|||+|.++..+++++. ...++++|+|+.+++.|+++
T Consensus 197 ~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 197 TDWTIHNHANVFSRTGLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred ceEEEEecCCccCCCCcChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 3344444444444332222 3445566665433 3899999999999999998853 45889999999999999865
Q ss_pred --CC----CeEEEEcccccCCCCCCceeEEEEcCCCcccc---c-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 245 --GI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT---A-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 245 --g~----~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~---~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+. .+.+...|... .+++.+||+|+|+..++.-. . ....++.++.++|+|||.|+++.
T Consensus 274 ~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 274 TNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred HcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 22 34555555432 23456899999998774321 1 12478999999999999999986
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-08 Score=101.10 Aligned_cols=137 Identities=17% Similarity=0.288 Sum_probs=96.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~ 257 (595)
...+++.+.+.+.. ...+|||+|||+|.++..+++.. ....++++|+++.+++.|+++ +.. +.+...+...
T Consensus 73 ~~~l~~~~l~~~~~---~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLKK---GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhccc---CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 44566666665542 23489999999999999999863 234788999999999988765 443 6777777654
Q ss_pred CCCCCCceeEEEEcCCCcc------cccC-------------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCch
Q 007645 258 LPFPAFSFDIVHCSRCLIP------FTAY-------------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 312 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h------~~~d-------------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~ 312 (595)
++++++||+|+|+..+.. +..+ ...++.++.++|+|||.+++... + .
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---~----~ 220 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---Y----D 220 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC---c----c
Confidence 456789999999654321 1100 12568899999999999999753 1 1
Q ss_pred hHHHHHHHHHHcCcEEEEe
Q 007645 313 EWADLQAVARALCYELIAV 331 (595)
Q Consensus 313 ~w~~l~~la~~~~w~~v~~ 331 (595)
.-..+.+++++.+|+.+..
T Consensus 221 ~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 221 QGEAVRALFEAAGFADVET 239 (251)
T ss_pred HHHHHHHHHHhCCCCceEE
Confidence 1235777788888866544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-09 Score=103.63 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=81.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||||||+|.++..|++.......++++|+++.+++.|+++ +. ++.+...|.....
T Consensus 64 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 3445566666655544 999999999999999988733334588899999999998865 43 4677777776544
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...+.||+|++..+..+. ...+.+.|+|||++++..
T Consensus 142 ~~~~~fD~Ii~~~~~~~~-------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKI-------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCCCEEEEcCCcccc-------cHHHHHhcCcCcEEEEEE
Confidence 445689999988765443 356788999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=110.58 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=96.9
Q ss_pred CCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCe
Q 007645 173 PGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPA 248 (595)
Q Consensus 173 p~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~ 248 (595)
-..+..|+.|...-.+...+.+........+|||+|||+|.++...++.|.. .+.++|+++.+++.|+++ ++..
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 3445667777766655555555433333459999999999999988888754 678899999999988876 5544
Q ss_pred EEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 249 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 249 ~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
.+...... ....+.||+|+++-.. + -...++..+.++|+|||+|++|+- . ......+.+.+++ +|++
T Consensus 212 ~~~v~~~~--~~~~~~~dlvvANI~~-~---vL~~l~~~~~~~l~~~G~lIlSGI----l--~~~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 212 RIEVSLSE--DLVEGKFDLVVANILA-D---VLLELAPDIASLLKPGGYLILSGI----L--EEQEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp CEEESCTS--CTCCS-EEEEEEES-H-H---HHHHHHHHCHHHEEEEEEEEEEEE----E--GGGHHHHHHHHHT-TEEE
T ss_pred eEEEEEec--ccccccCCEEEECCCH-H---HHHHHHHHHHHhhCCCCEEEEccc----c--HHHHHHHHHHHHC-CCEE
Confidence 44332222 2345899999987533 1 234678889999999999999984 1 1224456666666 8887
Q ss_pred EEee
Q 007645 329 IAVD 332 (595)
Q Consensus 329 v~~~ 332 (595)
+...
T Consensus 279 ~~~~ 282 (295)
T PF06325_consen 279 VEER 282 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7553
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-09 Score=108.33 Aligned_cols=120 Identities=24% Similarity=0.369 Sum_probs=83.8
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCC-CceeEEEEcCCC
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA-FSFDIVHCSRCL 274 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd-~sFDlV~~s~vL 274 (595)
+.++|||+|||+|.++...++.|.. .+.++|+++-+++.|+++ +++..........+..+. +.||+|+++- |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-h
Confidence 4569999999999999999998764 688999999999998876 444211111111222333 5899999985 3
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
-+ -...+..++.+.|||||++++|+. . .++ -+.+.+..++.+|+++..
T Consensus 239 A~---vl~~La~~~~~~lkpgg~lIlSGI---l--~~q-~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 AE---VLVELAPDIKRLLKPGGRLILSGI---L--EDQ-AESVAEAYEQAGFEVVEV 286 (300)
T ss_pred HH---HHHHHHHHHHHHcCCCceEEEEee---h--HhH-HHHHHHHHHhCCCeEeEE
Confidence 12 235788999999999999999984 1 111 233555566668887755
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2e-08 Score=96.53 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=87.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
.+|||+|||+|.++..++.++ ..+.++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..+
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 389999999999999999873 4788999999999988654 332 5666666544 3455689999987654
Q ss_pred cccc--------------------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 275 IPFT--------------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 275 ~h~~--------------------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.+.. .....+++++.++|||||.+++..+... .-+.+.+++++.+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~------~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT------GEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC------CHHHHHHHHHHCCCeeee
Confidence 3311 0134679999999999999988765211 124577888888987654
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-09 Score=109.58 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=83.4
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfp 261 (595)
+.+.+.+.... ..+|||||||+|.++..++++. ....++.+|. +.+++.++++ +. .+.+...|..+.+++
T Consensus 139 ~~l~~~~~~~~--~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~ 214 (306)
T TIGR02716 139 QLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214 (306)
T ss_pred HHHHHHcCCCC--CCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence 34444444433 3499999999999999999884 3356778897 6788877654 43 366778887666665
Q ss_pred CCceeEEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ +|+|++++++++|.++. ..+|+++.++|||||++++.+.
T Consensus 215 ~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 215 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred C--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 3 69999999998886432 5789999999999999999874
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=98.90 Aligned_cols=125 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CCCCCCc
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFS 264 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LPfpd~s 264 (595)
..+....+. +|||+|||+|.++..++..-.....+.++|.++.+++.|+++ ++ ++.+...+... ++..++.
T Consensus 34 ~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 344444444 899999999999998876522234788999999999988765 42 45666666654 3333468
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
||.|++.... .+...++.++.++|||||++++.... .....++.+.+++.+|+.
T Consensus 112 ~D~V~~~~~~----~~~~~~l~~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 112 FDRIFIGGGS----EKLKEIISASWEIIKKGGRIVIDAIL------LETVNNALSALENIGFNL 165 (198)
T ss_pred CCEEEECCCc----ccHHHHHHHHHHHcCCCcEEEEEeec------HHHHHHHHHHHHHcCCCe
Confidence 9999986422 35678999999999999999985431 112345666677777743
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.2e-09 Score=108.36 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=80.8
Q ss_pred cceEEEECCCCcHHHHHHhh-cCCceEEEEeecCcHHHHHHHHHcC-------CCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLS-ENILTLSFAPRDSHKAQIQFALERG-------IPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~-~gv~~~~v~~vD~s~~~l~~A~erg-------~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
.++|+|||||.|.+++.++. +-.....++++|.++++++.|++.. ..+.|..+|+..++-..+.||+|+|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 45899999998866555443 3345568999999999999998753 23788888877654335789999999
Q ss_pred CCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++|. ++...++..+.+.|+|||++++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888885 678899999999999999999976
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=108.79 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=94.8
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPf 260 (595)
....+.++.....+. +|||+|||+|.++..++..+ ..+.++|+++.+++.|+++ +.. +.+...|+.++|+
T Consensus 170 la~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~ 244 (329)
T TIGR01177 170 LARAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL 244 (329)
T ss_pred HHHHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc
Confidence 344445544444444 89999999999988876654 3688999999999988765 433 5778889999998
Q ss_pred CCCceeEEEEcCCCcc---c----c-cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 PAFSFDIVHCSRCLIP---F----T-AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h---~----~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++++||+|+++..+.. . . +....++.++.|+|||||++++..|.. . .++++++..+| ++..
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------~---~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------I---DLESLAEDAFR-VVKR 313 (329)
T ss_pred ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC------C---CHHHHHhhcCc-chhe
Confidence 8899999999643211 0 0 113688999999999999999987632 1 24467788888 5543
|
This family is found exclusively in the Archaea. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.9e-09 Score=108.34 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=75.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------CCCeEEEEccccc-CCCCCC----ceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRR-LPFPAF----SFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d~~~-LPfpd~----sFDlV~ 269 (595)
..+|||+|||+|..+..|+++......++++|+|++|++.|+++ ++++..+++|..+ ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 34899999999999999998743245789999999999988765 2345566777654 344332 234555
Q ss_pred EcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 270 CSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 270 ~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+...+.++. ++...+|+++.++|+|||.|++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 556666654 234588999999999999999865
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-08 Score=85.46 Aligned_cols=97 Identities=27% Similarity=0.364 Sum_probs=76.4
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----CCCeEEEEcccccCCC-CCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----GIPAFVAMLGTRRLPF-PAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g~~~~~~~~d~~~LPf-pd~sFDlV~~s~vL~h 276 (595)
++||+|||.|.++..+++. ....+.++|.++.+++.+++. .....+...+...... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999883 245888999999999888722 2245666666655543 5678999999999866
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+......++..+.+.|+|||.++++
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3456779999999999999999886
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.4e-09 Score=98.71 Aligned_cols=73 Identities=23% Similarity=0.166 Sum_probs=64.5
Q ss_pred eecCcHHHHHHHHHcC--------CCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 230 PRDSHKAQIQFALERG--------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 230 ~vD~s~~~l~~A~erg--------~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
++|+|++|++.|+++. .++.+.++|+.++|+++++||+|++..+++++. +...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 6899999999997652 247899999999999999999999999997765 8899999999999999999988
Q ss_pred cC
Q 007645 302 GP 303 (595)
Q Consensus 302 ~p 303 (595)
+.
T Consensus 81 d~ 82 (160)
T PLN02232 81 DF 82 (160)
T ss_pred EC
Confidence 64
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4e-08 Score=94.44 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=91.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH----cCCC--eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE----RGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e----rg~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
+|||+|||.|.+...|++.+... .++++|.|+.+++.|+. ++.+ +.|.++|+..-.+..+.||+|+--..+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 89999999999999999998753 48999999999987753 3555 78999998776777888999986443321
Q ss_pred cc-------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FT-------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~-------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.. ..+..++..+.++|+|||.|+|..- +|. ..+|.+.++..+++++..
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC--N~T-----~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC--NFT-----KDELVEEFENFNFEYLST 203 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec--Ccc-----HHHHHHHHhcCCeEEEEe
Confidence 11 1224678899999999999999865 333 345777777777776655
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=99.45 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=71.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCH
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN 281 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~ 281 (595)
..|-|+|||.+.++..+.. +..+.++ |+-. .+..+..+|+..+|++++++|++++..+| +..+.
T Consensus 74 ~viaD~GCGdA~la~~~~~-~~~V~Sf---DLva----------~n~~Vtacdia~vPL~~~svDv~VfcLSL--MGTn~ 137 (219)
T PF05148_consen 74 LVIADFGCGDAKLAKAVPN-KHKVHSF---DLVA----------PNPRVTACDIANVPLEDESVDVAVFCLSL--MGTNW 137 (219)
T ss_dssp S-EEEES-TT-HHHHH--S----EEEE---ESS-----------SSTTEEES-TTS-S--TT-EEEEEEES-----SS-H
T ss_pred EEEEECCCchHHHHHhccc-CceEEEe---eccC----------CCCCEEEecCccCcCCCCceeEEEEEhhh--hCCCc
Confidence 4899999999999977643 3444444 5422 12236678999999999999999976655 44688
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec
Q 007645 282 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 282 ~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~ 333 (595)
..++.|+.|+|||||.|.|.+...... .-+...+.++++||++..+..
T Consensus 138 ~~fi~EA~RvLK~~G~L~IAEV~SRf~----~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 138 PDFIREANRVLKPGGILKIAEVKSRFE----NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEGGG-S-----HHHHHHHHHCTTEEEEEEE-
T ss_pred HHHHHHHHheeccCcEEEEEEecccCc----CHHHHHHHHHHCCCeEEeccc
Confidence 999999999999999999987533222 345677888999999997643
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.1e-08 Score=98.47 Aligned_cols=136 Identities=15% Similarity=0.241 Sum_probs=91.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----CCeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----IPAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----~~~~~~~~d~~~L 258 (595)
+.+++.+.+.+.... ..+|||+|||+|.++..++... ....++++|+++.+++.|+++. .++.+...|...
T Consensus 94 e~l~~~~~~~~~~~~--~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~- 169 (275)
T PRK09328 94 EELVEWALEALLLKE--PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE- 169 (275)
T ss_pred HHHHHHHHHhccccC--CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-
Confidence 445555554443333 3489999999999999998874 2357899999999999998762 246777776533
Q ss_pred CCCCCceeEEEEcCCCcccc-------------------------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 259 PFPAFSFDIVHCSRCLIPFT-------------------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~-------------------------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
++++++||+|+|+....... +....++.++.++|+|||++++... +. .
T Consensus 170 ~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g---~~----~ 242 (275)
T PRK09328 170 PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG---YD----Q 242 (275)
T ss_pred cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---ch----H
Confidence 33457999999964322110 0124678888899999999999642 11 1
Q ss_pred HHHHHHHHHHcCcEEEE
Q 007645 314 WADLQAVARALCYELIA 330 (595)
Q Consensus 314 w~~l~~la~~~~w~~v~ 330 (595)
-..+.+++++.+|..+.
T Consensus 243 ~~~~~~~l~~~gf~~v~ 259 (275)
T PRK09328 243 GEAVRALLAAAGFADVE 259 (275)
T ss_pred HHHHHHHHHhCCCceeE
Confidence 23466677777776443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.4e-08 Score=100.11 Aligned_cols=130 Identities=11% Similarity=0.017 Sum_probs=82.9
Q ss_pred ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHH----HHHHHHHcCCCeEEEEccccc---CCCCCCceeEE
Q 007645 196 ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKA----QIQFALERGIPAFVAMLGTRR---LPFPAFSFDIV 268 (595)
Q Consensus 196 ~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~----~l~~A~erg~~~~~~~~d~~~---LPfpd~sFDlV 268 (595)
...+. +|||+|||+|.++..+++.--..-.|.++|+++. +++.|.++ .++.++..|+.. +.....+||+|
T Consensus 130 IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEE
Confidence 44444 9999999999999999987222236788899986 45555544 456677777543 22234589999
Q ss_pred EEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC-CCCC--chhHHHHHHHHHHcCcEEEEe
Q 007645 269 HCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ-WPKQ--DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 269 ~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~~~~--~~~w~~l~~la~~~~w~~v~~ 331 (595)
++.... +++...++.++.++|||||+|++...... +... +..+.+-.+.+++.+|+.+..
T Consensus 207 ~~Dva~---pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~ 269 (293)
T PTZ00146 207 FADVAQ---PDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQ 269 (293)
T ss_pred EEeCCC---cchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 987642 22445677899999999999999643111 1100 111111124566677876643
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=105.38 Aligned_cols=102 Identities=27% Similarity=0.328 Sum_probs=75.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------------CCeEEEEccccc------C
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------------IPAFVAMLGTRR------L 258 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------------~~~~~~~~d~~~------L 258 (595)
...+|||+|||-|.-..-....++ ..++++|++...++.|++|. ..+.+...|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 355999999999987777777655 47899999999999998874 345667776532 2
Q ss_pred CCCCCceeEEEEcCCCcccccCHH---HHHHHHHhhcCCCcEEEEEcC
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNA---TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~---~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.....||+|-|.+++|+..+..+ .+|..+...|||||+|+.++|
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 222359999999999977665443 689999999999999999987
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=101.39 Aligned_cols=138 Identities=14% Similarity=0.137 Sum_probs=93.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
+.+++.+.+.++ . ..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.++.+...|.....
T Consensus 239 E~LVe~aL~~l~--~--~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~ 313 (423)
T PRK14966 239 EHLVEAVLARLP--E--NGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD 313 (423)
T ss_pred HHHHHHhhhccC--C--CCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc
Confidence 445555555443 2 2389999999999999988653 234788999999999998875 556778888865433
Q ss_pred CC-CCceeEEEEcCCCcccc--------------------cC----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhH
Q 007645 260 FP-AFSFDIVHCSRCLIPFT--------------------AY----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 314 (595)
Q Consensus 260 fp-d~sFDlV~~s~vL~h~~--------------------~d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w 314 (595)
++ .++||+|+|+--...-. ++ ...++.++.+.|+|||.+++... + ..-
T Consensus 314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---~----~Q~ 386 (423)
T PRK14966 314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---F----DQG 386 (423)
T ss_pred cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---c----cHH
Confidence 32 45899999976432110 00 12556777889999999988653 1 123
Q ss_pred HHHHHHHHHcCcEEEEeec
Q 007645 315 ADLQAVARALCYELIAVDG 333 (595)
Q Consensus 315 ~~l~~la~~~~w~~v~~~~ 333 (595)
+.+++++++.+|..+....
T Consensus 387 e~V~~ll~~~Gf~~v~v~k 405 (423)
T PRK14966 387 AAVRGVLAENGFSGVETLP 405 (423)
T ss_pred HHHHHHHHHCCCcEEEEEE
Confidence 3577888888887654433
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-07 Score=97.51 Aligned_cols=126 Identities=11% Similarity=-0.006 Sum_probs=92.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC-
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY- 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d- 280 (595)
.+|||+|||+|.++..++.+.. ...++++|+++.+++.|+++..++.+...|+..+. .+++||+|+++..+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-SNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-ccCCCcEEEEcCCccccCchh
Confidence 4899999999999988877621 24789999999999999988667888888887665 34689999998888764311
Q ss_pred ------------------HHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 281 ------------------NATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 281 ------------------~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
....+..+.++|+|+|.+.+.-- +.+. ....=.+..++++..++.+...
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~--~sl~~~~y~~~l~~~g~~~~~~ 212 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYD--GTMKSNKYLKWSKQTGLVTYAG 212 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccccc--ccCCHHHHHHHHHhcCcEecCC
Confidence 13566778889999998776532 2221 1112445778888888877644
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.8e-08 Score=96.95 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCC--CC
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLP--FP 261 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LP--fp 261 (595)
|.+...... ..+|||+|||+|..+..++++--. ..++++|+++.+.++|+++ + ..+.+.+.|...+. ..
T Consensus 36 L~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 36 LAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHhhccccc--CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 334444333 458999999999999999998333 6899999999999999876 1 24677788876653 33
Q ss_pred CCceeEEEEcCCCccccc-----------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc
Q 007645 262 AFSFDIVHCSRCLIPFTA-----------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~-----------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~ 324 (595)
..+||+|+|+--+..-.. +.+.+++-+.++|||||++.++-++ ....++.++++++
T Consensus 113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------erl~ei~~~l~~~ 185 (248)
T COG4123 113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------ERLAEIIELLKSY 185 (248)
T ss_pred ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------HHHHHHHHHHHhc
Confidence 457999999764432211 2347788899999999999998752 2233567778887
Q ss_pred CcEEEEeecceeEeeccCC
Q 007645 325 CYELIAVDGNTVIWKKPVG 343 (595)
Q Consensus 325 ~w~~v~~~~~~~iw~K~~~ 343 (595)
+|..... ..|+.|+..
T Consensus 186 ~~~~k~i---~~V~p~~~k 201 (248)
T COG4123 186 NLEPKRI---QFVYPKIGK 201 (248)
T ss_pred CCCceEE---EEecCCCCC
Confidence 7766544 344444433
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-07 Score=97.42 Aligned_cols=119 Identities=13% Similarity=0.124 Sum_probs=84.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++.+. ....++++|+|+.+++.|+++ ++ .+.+...|... ++++++||+|+|+--..
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCCC
Confidence 489999999999999999873 234788999999999998875 44 36777777533 34556899999963211
Q ss_pred -------------ccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 -------------PFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 -------------h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
|-+ +....++.++.++|+|||++++... ..+..+.+++...+|....
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g--------~~~~~v~~~~~~~~~~~~~ 271 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG--------NSMEALEEAYPDVPFTWLE 271 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--------cCHHHHHHHHHhCCCceee
Confidence 100 0113668899999999999998764 1234677777776665543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=7e-08 Score=97.20 Aligned_cols=99 Identities=13% Similarity=0.038 Sum_probs=83.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH-----------------cCCCeEEEEcccccCCCC---
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-----------------RGIPAFVAMLGTRRLPFP--- 261 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e-----------------rg~~~~~~~~d~~~LPfp--- 261 (595)
.+||+.|||.|.-+..|+++|. +|+++|+|+.+++.+.+ ++..+.+.++|...++..
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 4899999999999999999987 67888999999998755 245678889998888642
Q ss_pred CCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+.||+|+-..+|++++++ ...+.+.+.++|+|||.+++..-
T Consensus 122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2689999999999888744 35899999999999999988763
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=99.02 Aligned_cols=133 Identities=15% Similarity=0.209 Sum_probs=90.7
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----CCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----IPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
...++||.|||.|..+..|+-.-... +.-+|..+..++.|++.- ....+.+.+++.+..+.+.||+|++.+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~--VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDE--VDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SE--EEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCE--eEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 35689999999999999887664554 444789999999999642 22567777788876556899999999999
Q ss_pred cccc-cCHHHHHHHHHhhcCCCcEEEEEcCCCC-----CCCCchh----HHHHHHHHHHcCcEEEEeecc
Q 007645 275 IPFT-AYNATYLIEVDRLLRPGGYLVISGPPVQ-----WPKQDKE----WADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 275 ~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~-----~~~~~~~----w~~l~~la~~~~w~~v~~~~~ 334 (595)
.|++ ++.-.+|+.+...|+|+|.+++-+.-.. +...+.. -..+.+++++.+++++..+.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 9998 3445999999999999999999665211 1112211 556899999999999987543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-07 Score=97.80 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=89.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~ 257 (595)
..+++.+.+.+....+ ..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.. +.+...|...
T Consensus 99 e~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 99 EELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred HHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc
Confidence 4455554443321111 1489999999999999999873 234788999999999998875 443 6777777543
Q ss_pred CCCCCCceeEEEEcCC-------------Ccccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 258 LPFPAFSFDIVHCSRC-------------LIPFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 258 LPfpd~sFDlV~~s~v-------------L~h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
++++++||+|+++-- +.|-+ .....++.++.+.|+|||++++... + ..
T Consensus 177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g---~----~q 248 (284)
T TIGR00536 177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG---N----WQ 248 (284)
T ss_pred -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC---c----cH
Confidence 345558999999621 11111 0233678899999999999998653 1 11
Q ss_pred HHHHHHHHH-HcCcEEEEe
Q 007645 314 WADLQAVAR-ALCYELIAV 331 (595)
Q Consensus 314 w~~l~~la~-~~~w~~v~~ 331 (595)
-..+.+++. ..+|..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 249 QKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred HHHHHHHHHhcCCCceeEE
Confidence 124566655 456755433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=94.06 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=77.1
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf 260 (595)
....+.+.+....+. +|||+|||+|.++..|++.. ..+.++|.++.+++.|+++ +. ++.+...+......
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 140 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP 140 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC
Confidence 344555556555444 89999999999998887763 2688899999999988775 33 36777776543222
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.++||+|++..++.++ ..++.+.|+|||.+++...
T Consensus 141 ~~~~fD~I~~~~~~~~~-------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 AYAPFDRILVTAAAPEI-------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCEEEEccCchhh-------hHHHHHhcCCCcEEEEEEc
Confidence 34789999998766443 3567899999999999753
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-08 Score=98.79 Aligned_cols=124 Identities=20% Similarity=0.296 Sum_probs=86.8
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDl 267 (595)
+.|.+.+....+ ...|-|+|||.+.++..-. ..+..++++++ +-.+...|+.++|++|++.|+
T Consensus 169 d~ii~~ik~r~~-~~vIaD~GCGEakiA~~~~-~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRPK-NIVIADFGCGEAKIASSER-HKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCcC-ceEEEecccchhhhhhccc-cceeeeeeecC---------------CCceeeccccCCcCccCcccE
Confidence 444445544433 3478999999998886211 12333333322 345677889999999999999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
+++. |.-+..+...++.|++|+|+|||.++|......+. .-..+.+.+..+||+.......
T Consensus 232 aV~C--LSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~----dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 232 AVFC--LSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFS----DVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred EEee--HhhhcccHHHHHHHHHHHhccCceEEEEehhhhcc----cHHHHHHHHHHcCCeeeehhhh
Confidence 9965 44455688999999999999999999987533332 2334777888999998876544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=94.23 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=68.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..++.+......+.++|+++.+ ...++.+.+.+..+.+ +++++||+|++..+
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAA 107 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCC
Confidence 489999999999999888764333468889999854 2234566666765432 45678999998654
Q ss_pred Cc---cccc-------CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LI---PFTA-------YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~---h~~~-------d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+ +|.. +...++.++.++|+|||++++..
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 108 PNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 21 1111 12578999999999999999965
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-08 Score=101.15 Aligned_cols=99 Identities=21% Similarity=0.281 Sum_probs=87.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
..+++|||||.|.....|...++. .+.-+|.|..|++.++.. ++.....+.|-+.|+|.+++||+|+++..+ ||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl-HW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL-HW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-hh
Confidence 448999999999999999999854 677889999999998865 455677788999999999999999999998 99
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
..+....+..+...|||+|.|+-+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHH
Confidence 9888999999999999999998764
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=91.69 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=75.9
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LPfpd 262 (595)
.+.+.+....+. +|||+|||+|.++..++... ....++++|.++.+++.|+++ +. ++.+...++.. ++...
T Consensus 31 ~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 107 (196)
T PRK07402 31 LLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA 107 (196)
T ss_pred HHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC
Confidence 455556544444 89999999999999987653 235788999999999988764 33 46677666543 22222
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+|.++... ..+...++.++.++|+|||++++..+
T Consensus 108 ~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 108 PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 3457665432 23457899999999999999999864
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.3e-08 Score=96.89 Aligned_cols=120 Identities=22% Similarity=0.276 Sum_probs=86.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCC-ceEEEEeecCcHHHHHHHHHcCC------CeEEEEcccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENI-LTLSFAPRDSHKAQIQFALERGI------PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv-~~~~v~~vD~s~~~l~~A~erg~------~~~~~~~d~~ 256 (595)
.-..+..-++++.......+||+||||.|....-+++-+. ....+.+.|.|+.+++..+++.. .+.+..++..
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSP 134 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccch
Confidence 3344555566654443344899999999998888877632 23678899999999999887622 1222222222
Q ss_pred c--CCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 R--LPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~--LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. -|.+.+++|+|++.++|.-.. +....++.++.++|||||.+++.+.
T Consensus 135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 2 356789999999999998776 3446899999999999999999864
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.5e-07 Score=101.66 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=86.6
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC--CCCCce
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSF 265 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP--fpd~sF 265 (595)
..+....+ .+|||+|||+|..+..++++... ..++++|.++.+++.++++ |..+.+...|+..++ ++.++|
T Consensus 238 ~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 238 TLLAPQNG--ERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred HHcCCCCC--CEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence 34444444 48999999999999999987422 4788999999999988765 556677788877654 346789
Q ss_pred eEEEEcCCCc-----------ccccC----------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 266 DIVHCSRCLI-----------PFTAY----------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 266 DlV~~s~vL~-----------h~~~d----------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
|.|++..... .|... ...+|.++.++|||||++++++-.....+++ ..+..++++
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene---~~v~~~l~~ 390 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENE---QQIKAFLAR 390 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCH---HHHHHHHHh
Confidence 9999533111 11111 2368999999999999999998633333222 244455543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-08 Score=102.00 Aligned_cols=101 Identities=25% Similarity=0.258 Sum_probs=80.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----------CCeEEEEccc------ccCCCCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----------IPAFVAMLGT------RRLPFPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----------~~~~~~~~d~------~~LPfpd~ 263 (595)
...+||+|||-|.-+.-.-.+++. .+.++|+++..++.|++|. ..+.|..+|. ..+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 447999999999888877777664 7889999999999998771 2467777774 33566777
Q ss_pred ceeEEEEcCCCcccccC---HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d---~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+||+|-|.+|+|.-.+. ...+|..+.+.|||||+|+-+.|
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 79999999999543333 34789999999999999999988
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-07 Score=94.88 Aligned_cols=122 Identities=18% Similarity=0.278 Sum_probs=90.1
Q ss_pred CCCCCcccccHHHHHHHHHhhc-cccC-CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEE
Q 007645 173 PGGGTMFADGADKYIDKLKQYI-PITG-GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFV 250 (595)
Q Consensus 173 p~~g~~F~~~a~~yi~~L~~~l-~~~~-g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~ 250 (595)
.|.|.+|--...++.+.+...- .... ....++||||+|.|..+..|+.. + -.+...+.|..|...-+++|..+.
T Consensus 65 LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~-f--~~v~aTE~S~~Mr~rL~~kg~~vl- 140 (265)
T PF05219_consen 65 LGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL-F--KEVYATEASPPMRWRLSKKGFTVL- 140 (265)
T ss_pred hcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh-c--ceEEeecCCHHHHHHHHhCCCeEE-
Confidence 4677777777777765554221 1111 13458999999999999999876 2 256777999999999899997532
Q ss_pred EEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 251 AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 251 ~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+..+..-.+.+||+|.|.++|.. ..+|..+|+++.+.|+|+|.++++.
T Consensus 141 ---~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 141 ---DIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---ehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 22233334568999999999944 4588999999999999999999864
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=94.24 Aligned_cols=112 Identities=15% Similarity=0.115 Sum_probs=79.0
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
+......+.+.+...++. +|||||||+|.+++.|+..--....++.+|.++...+.|+++ +. ++.+.++|...
T Consensus 57 ~P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp -HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 445566777788777766 999999999999999988722233677889999999999876 44 57788877544
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
---....||.|++.......+ ..+.+.||+||++++-..
T Consensus 135 g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEEc
Confidence 322346899999998774432 346777999999999653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-07 Score=94.06 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +. .+.+...|... ++++++||+|+|+--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 489999999999999998863 335788999999999998876 43 36777777543 23456899999973211
Q ss_pred -------------ccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 276 -------------PFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 276 -------------h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
|.+ +....++.++.+.|+|||++++... + ....+.+++...++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g---~-----~~~~~~~~~~~~~~~ 280 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG---N-----SRVHLEEAYPDVPFT 280 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC---c-----CHHHHHHHHhhCCCE
Confidence 111 0113678999999999999999653 1 123466666655543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-06 Score=89.73 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=89.1
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEccccc-CC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRR-LP 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~-LP 259 (595)
...+++.+.+.+.... ...+|||+|||+|.++..++... ....++++|+++.+++.|+++. ....+...|... ++
T Consensus 70 Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~ 147 (251)
T TIGR03704 70 TEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALP 147 (251)
T ss_pred HHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcc
Confidence 4455666555443221 23479999999999999988762 2346889999999999988762 124566666543 22
Q ss_pred C-CCCceeEEEEcCCCcccc---------------------cC----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 260 F-PAFSFDIVHCSRCLIPFT---------------------AY----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 260 f-pd~sFDlV~~s~vL~h~~---------------------~d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
- ..++||+|+++--..... .+ ...++..+.++|+|||.+++.... ..
T Consensus 148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-------~~ 220 (251)
T TIGR03704 148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-------RQ 220 (251)
T ss_pred hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------ch
Confidence 1 135799999975332110 01 126677888999999999997641 11
Q ss_pred HHHHHHHHHHcCcEEE
Q 007645 314 WADLQAVARALCYELI 329 (595)
Q Consensus 314 w~~l~~la~~~~w~~v 329 (595)
-..+..++++.+|+..
T Consensus 221 ~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 221 APLAVEAFARAGLIAR 236 (251)
T ss_pred HHHHHHHHHHCCCCce
Confidence 2356667776666544
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-07 Score=99.61 Aligned_cols=128 Identities=16% Similarity=0.099 Sum_probs=87.4
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC----CCC
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP----FPA 262 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP----fpd 262 (595)
..+....+. +|||+|||+|..+..+++..-....++++|+++.+++.++++ |. ++.+...|+..++ +.+
T Consensus 246 ~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 246 PLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred HHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccccc
Confidence 344444444 899999999999999987622234788999999999888765 54 4677778877665 456
Q ss_pred CceeEEEEc------CCCccccc---------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHH
Q 007645 263 FSFDIVHCS------RCLIPFTA---------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVA 321 (595)
Q Consensus 263 ~sFDlV~~s------~vL~h~~~---------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la 321 (595)
++||.|++. .++.+-++ ....+|.++.++|||||++++++-..... ..-..++.++
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~---Ene~~v~~~l 400 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA---ENEAQIEQFL 400 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh---hHHHHHHHHH
Confidence 789999963 22222110 13477999999999999999988533222 2233455555
Q ss_pred HHc
Q 007645 322 RAL 324 (595)
Q Consensus 322 ~~~ 324 (595)
++.
T Consensus 401 ~~~ 403 (434)
T PRK14901 401 ARH 403 (434)
T ss_pred HhC
Confidence 543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-07 Score=97.13 Aligned_cols=109 Identities=11% Similarity=0.072 Sum_probs=78.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.+...+.+.+....+. +|||+|||+|.++..+++.......++++|.++.+++.|+++ +. ++.+..+|....+
T Consensus 67 ~l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~ 144 (322)
T PRK13943 67 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV 144 (322)
T ss_pred HHHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc
Confidence 3444555555555444 899999999999999987632222578899999999988764 44 3667777766555
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...++||+|++...+.+. ...+.+.|+|||.+++..
T Consensus 145 ~~~~~fD~Ii~~~g~~~i-------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 145 PEFAPYDVIFVTVGVDEV-------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccCCccEEEECCchHHh-------HHHHHHhcCCCCEEEEEe
Confidence 455789999998655332 335678999999998864
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.3e-07 Score=99.81 Aligned_cols=128 Identities=16% Similarity=0.133 Sum_probs=85.3
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEE--EEcccccCCC--C
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFV--AMLGTRRLPF--P 261 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~--~~~d~~~LPf--p 261 (595)
+...+....+ .+|||+|||+|..+..+++... ...++++|+++.+++.++++ |..+.+ ..++....++ +
T Consensus 230 ~~~~L~~~~g--~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 230 VATWLAPQNE--ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHhCCCCC--CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3344444444 4899999999999999988632 35789999999999888765 555333 4445444443 5
Q ss_pred CCceeEEEEc------CCCccccc-----C----------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHH
Q 007645 262 AFSFDIVHCS------RCLIPFTA-----Y----------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 320 (595)
Q Consensus 262 d~sFDlV~~s------~vL~h~~~-----d----------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~l 320 (595)
+++||.|++. .++.+.++ . ...+|.++.++|||||++++++-.....+++ ..++.+
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene---~~v~~~ 383 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENS---EQIKAF 383 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCH---HHHHHH
Confidence 6789999952 23322211 1 2478999999999999999998644333333 234555
Q ss_pred HHH
Q 007645 321 ARA 323 (595)
Q Consensus 321 a~~ 323 (595)
+++
T Consensus 384 l~~ 386 (426)
T TIGR00563 384 LQE 386 (426)
T ss_pred HHh
Confidence 554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.61 E-value=2e-07 Score=89.33 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCCCCc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfpd~s 264 (595)
+.+.+.+....+. +|||+|||+|.++..+++++ ..++++|+++.+++.++++. .++.+...|+..+++++.+
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 3455555544444 89999999999999999883 37888999999999998773 2577888999888888778
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhh--cCCCcEEEEEc
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRL--LRPGGYLVISG 302 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~Rv--LRPGG~lvls~ 302 (595)
||.|+++.-+ |.. ...+..+.+. +.++|.+++.-
T Consensus 78 ~d~vi~n~Py-~~~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 78 PYKVVGNLPY-NIS---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred CCEEEECCCc-ccH---HHHHHHHHhcCCCcceEEEEEEH
Confidence 9999987654 322 2333333332 45788887753
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-07 Score=90.71 Aligned_cols=143 Identities=27% Similarity=0.429 Sum_probs=92.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH----HHcCCCeE--EEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA----LERGIPAF--VAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A----~erg~~~~--~~~~d~~~ 257 (595)
+...+.|.+.++... .+|||||||||..+.+++++ ...+..-+.|.++..+.-. .+.+.+.. -...|+..
T Consensus 12 ~pIl~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 344455555554432 15999999999999999987 4456788889888775322 23333210 11223322
Q ss_pred C--C------CCCCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEEEEcCCCC-CC---CC-----------ch
Q 007645 258 L--P------FPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLVISGPPVQ-WP---KQ-----------DK 312 (595)
Q Consensus 258 L--P------fpd~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~~---~~-----------~~ 312 (595)
- | +..++||+|+|.+++ |.. ...+.++..+.++|+|||.|++-+|-.. -. .. +.
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC
Confidence 2 2 235689999999998 544 2345889999999999999999998211 10 00 00
Q ss_pred h-----HHHHHHHHHHcCcEEEEe
Q 007645 313 E-----WADLQAVARALCYELIAV 331 (595)
Q Consensus 313 ~-----w~~l~~la~~~~w~~v~~ 331 (595)
. .+.+.+++++.++++...
T Consensus 167 ~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 167 EWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred CcCccCHHHHHHHHHHCCCccCcc
Confidence 0 334788888888887644
|
The function of this family is unknown. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.2e-07 Score=93.97 Aligned_cols=102 Identities=12% Similarity=0.101 Sum_probs=76.0
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----------CCeEEEEccccc-CCCCCCceeEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRR-LPFPAFSFDIV 268 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------~~~~~~~~d~~~-LPfpd~sFDlV 268 (595)
..++|||||||.|..+..++++. ...+++.+|+++.+++.|++.. .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35689999999999999998862 2347888999999999998752 246677777544 23346789999
Q ss_pred EEcCCCcccccC----HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 269 HCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 269 ~~s~vL~h~~~d----~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++...- ++... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDSTD-PVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 986432 32211 25778999999999999998654
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.3e-07 Score=102.49 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=81.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCCCceeEEEEc----C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCS----R 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd~sFDlV~~s----~ 272 (595)
.+|||+|||+|..+..+++..-....++++|+++.+++.++++ |+. +.+...|+..++ ++++||+|++- .
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcsg 330 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCTG 330 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCCC
Confidence 4899999999999988877522224788999999999888765 543 677777877665 56789999952 1
Q ss_pred --CCc-----cccc----------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 273 --CLI-----PFTA----------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 273 --vL~-----h~~~----------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
.+. .|.. ....+|.++.++|||||++++++-...-.++ -..++.++++
T Consensus 331 ~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~En---e~~v~~~l~~ 395 (445)
T PRK14904 331 TGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEEN---ELQIEAFLQR 395 (445)
T ss_pred cchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhH---HHHHHHHHHh
Confidence 111 0111 1236899999999999999999864333222 2235555554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.6e-07 Score=95.11 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=97.7
Q ss_pred ecCCCCCcccccHH-HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----
Q 007645 171 TFPGGGTMFADGAD-KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----- 244 (595)
Q Consensus 171 ~fp~~g~~F~~~a~-~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----- 244 (595)
-+..|..++...-+ .|.+.+....-......++||++|||+|..+..+++.. ....++.+|+++++++.|++.
T Consensus 120 L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 120 LYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccch
Confidence 34455555544333 34555555332333345699999999999999888763 345788899999999999962
Q ss_pred -------CCCeEEEEccccc-CCCCCCceeEEEEcCCCcccc-----cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 245 -------GIPAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFT-----AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 245 -------g~~~~~~~~d~~~-LPfpd~sFDlV~~s~vL~h~~-----~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
..++.+...|+.. +.-.++.||+|++...- +.. -....++..+.+.|+|||.++...... +.. .
T Consensus 199 ~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~D-P~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp-~~~-~ 275 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPD-PATELLSTLYTSELFARIATFLTEDGAFVCQSNSP-ADA-P 275 (374)
T ss_pred hccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCC-ccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh-hhh-H
Confidence 2356777777654 34445789999987321 111 012468899999999999998875322 111 1
Q ss_pred hhHHHHHHHHHHcCcEEE
Q 007645 312 KEWADLQAVARALCYELI 329 (595)
Q Consensus 312 ~~w~~l~~la~~~~w~~v 329 (595)
.....+.+.+++.++...
T Consensus 276 ~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 276 LVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 122224555555555444
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-07 Score=91.93 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=77.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
.++|||||+|.|.++..++++. +.+.++-.|. +..++.+++ ..++.+..+|.. -++|. +|+++..++||+|.++
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSDE 174 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-HH
T ss_pred ccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcchH
Confidence 4589999999999999999884 3446777787 777888877 667888888877 66775 9999999999999833
Q ss_pred -HHHHHHHHHhhcCCC--cEEEEEcC
Q 007645 281 -NATYLIEVDRLLRPG--GYLVISGP 303 (595)
Q Consensus 281 -~~~~L~Ei~RvLRPG--G~lvls~p 303 (595)
...+|+.+.+.|+|| |+++|.+.
T Consensus 175 ~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 175 DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 348899999999999 99999876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.3e-07 Score=98.13 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=85.7
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC-CCCCcee
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFD 266 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP-fpd~sFD 266 (595)
.+....+. +|||+|||+|..+..+++.--....++++|+++.+++.++++ |+. +.+...|...++ +.+++||
T Consensus 232 ~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD 309 (431)
T PRK14903 232 LMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFD 309 (431)
T ss_pred HhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCC
Confidence 34444444 899999999999998887632234788999999999988765 543 567778877765 4567899
Q ss_pred EEEEcC-C--Cccccc------------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHH
Q 007645 267 IVHCSR-C--LIPFTA------------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVAR 322 (595)
Q Consensus 267 lV~~s~-v--L~h~~~------------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~ 322 (595)
.|++.. | +..+.. ....+|.++.+.|||||++++++-.....+.+ ..++.+++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne---~vv~~fl~ 383 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENT---EVVKRFVY 383 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCH---HHHHHHHH
Confidence 999721 1 111111 12366899999999999999998754333222 33555554
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.7e-07 Score=94.04 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=75.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcC----
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSR---- 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~---- 272 (595)
.+|||+|||+|..+..+++.--....+.++|+++.+++.++++ ++ ++.+...|...++...+.||.|++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 3899999999999998887622223688999999999888765 44 45677777766665566799999632
Q ss_pred --CCcc-------cc--------cCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 273 --CLIP-------FT--------AYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 273 --vL~h-------~~--------~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
++.+ +. .....+|.++.++|||||+++.++-..
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1111 11 012358999999999999999998643
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.3e-07 Score=97.61 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=78.5
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAF 263 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~ 263 (595)
...+....+ .+|||+|||+|..+..+++.......++++|+++.+++.++++ |. ++.+...|...++ ++ +
T Consensus 243 ~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~ 319 (444)
T PRK14902 243 APALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-E 319 (444)
T ss_pred HHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-c
Confidence 334444443 4899999999999999988622234788999999999888765 44 3677777876653 33 7
Q ss_pred ceeEEEEcCC------Ccc-----cccC----------HHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 264 SFDIVHCSRC------LIP-----FTAY----------NATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 264 sFDlV~~s~v------L~h-----~~~d----------~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
+||+|++..- +.+ |... ...+|.++.++|||||.+++++...
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 8999997431 111 1000 1357999999999999999987533
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-07 Score=89.38 Aligned_cols=95 Identities=9% Similarity=0.069 Sum_probs=72.6
Q ss_pred ceEEEECCCCcHHHHHHhhcC--CceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-
Q 007645 202 RTALDMGCGVASFGGSMLSEN--ILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT- 278 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~g--v~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~- 278 (595)
.+|||+|||+|.++..++++. .....++++|+++.+++.|+++...+.+...|....++ +++||+|+++--+....
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCccc
Confidence 489999999999999887651 12348999999999999999887778888888876654 56899999987664222
Q ss_pred cC----------HHHHHHHHHhhcCCCcE
Q 007645 279 AY----------NATYLIEVDRLLRPGGY 297 (595)
Q Consensus 279 ~d----------~~~~L~Ei~RvLRPGG~ 297 (595)
.+ ...++..+.|++++|+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 23578888887777775
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.5e-07 Score=88.01 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=68.5
Q ss_pred CcceEEEECCCCc----HHHHHHhhc--C--CceEEEEeecCcHHHHHHHHHc--------C------------------
Q 007645 200 TLRTALDMGCGVA----SFGGSMLSE--N--ILTLSFAPRDSHKAQIQFALER--------G------------------ 245 (595)
Q Consensus 200 ~~r~VLDIGCGtG----~~a~~La~~--g--v~~~~v~~vD~s~~~l~~A~er--------g------------------ 245 (595)
..-+|+-+||++| +++..|.+. + ...+.+.+.|+|+.+++.|++- +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4568999999999 666666662 1 2257999999999999999742 1
Q ss_pred -------CCeEEEEcccccCCCCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 246 -------IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 246 -------~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
-.+.|...++.+.+.+.+.||+|+|.+||+++.+ ....++..+.+.|+|||+|++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 1256666666553345678999999999999873 235899999999999999999654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-06 Score=85.73 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccc-cC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTR-RL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~-~L 258 (595)
.....+.+.+....+. +|||||||+|..++.|++..- .+..+|..+...+.|+++ |. ++.+.++|.. -+
T Consensus 59 ~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~ 133 (209)
T COG2518 59 HMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW 133 (209)
T ss_pred HHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 3455667777777766 999999999999999998733 666778889999999876 55 5777777743 33
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
| +...||.|+.+.+....+ ..+.+.||+||++++-.
T Consensus 134 ~-~~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 134 P-EEAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred C-CCCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 3 347899999988775554 23567889999999965
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=90.32 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=80.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~L 258 (595)
.|.+.+...+... ...++|||||||+|.++..+++.. ....++.+|+++++++.|++.. .++.+...|....
T Consensus 52 ~y~~~m~~~l~~~-~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 52 AYTRAMMGFLLFN-PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 4555554433222 234589999999999999998773 4567899999999999999862 2356777775432
Q ss_pred -CCCCCceeEEEEcCCCc--cccc--CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 -PFPAFSFDIVHCSRCLI--PFTA--YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 -Pfpd~sFDlV~~s~vL~--h~~~--d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.-..++||+|++.. +. ..+. ....+++++.++|+|||.+++..
T Consensus 130 l~~~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 130 IAVHRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred HHhCCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 22236899999753 21 1111 12589999999999999999953
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=86.46 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH-cCC----------------CeEEEEcccccCCCCC-C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE-RGI----------------PAFVAMLGTRRLPFPA-F 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e-rg~----------------~~~~~~~d~~~LPfpd-~ 263 (595)
.+||+.|||.|.-+..|+++|. +++++|+|+.+++.+.+ ++. .+.+.++|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 4899999999999999999975 78899999999999843 332 2456778877776433 4
Q ss_pred ceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC-chh----HHHHHHHHHHcCcEEEEee
Q 007645 264 SFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWPKQ-DKE----WADLQAVARALCYELIAVD 332 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~-~~~----w~~l~~la~~~~w~~v~~~ 332 (595)
+||+|+=..+|+-+++ ....+.+.+.++|+|||.+++.+-...-... ..+ -+++++++. -+|++...+
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 7999998888876663 4469999999999999995444321111111 122 345677766 567666543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-06 Score=94.95 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=86.3
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------------CCCeEEEEcccccC-CCCCCcee
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------------GIPAFVAMLGTRRL-PFPAFSFD 266 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------------g~~~~~~~~d~~~L-Pfpd~sFD 266 (595)
+.++|||+|||+|..+..+++++ ...+++.+|+++++++.|+++ ..++.+...|..+. ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35689999999999999998763 225788899999999999983 13467777776542 33357899
Q ss_pred EEEEcCCCcccccC-----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 267 IVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 267 lV~~s~vL~h~~~d-----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
+|++...- +.... ...+++.+.+.|||||.+++...+.... ......+.+.+++.++.
T Consensus 376 vIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~--~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 376 VIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA--PKAFWSIEATLEAAGLA 438 (521)
T ss_pred EEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc--hHHHHHHHHHHHHcCCE
Confidence 99997533 22111 1358899999999999999876432221 12234456666677773
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-06 Score=80.82 Aligned_cols=123 Identities=16% Similarity=0.076 Sum_probs=85.9
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccc-cCCCCCC
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTR-RLPFPAF 263 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~-~LPfpd~ 263 (595)
....+...+++ +++|||||+|+.+..++.. .....+.++|-++++++..+++ +. ++.++.+++. .|+-.+
T Consensus 26 ~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~- 101 (187)
T COG2242 26 TLSKLRPRPGD--RLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP- 101 (187)
T ss_pred HHHhhCCCCCC--EEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-
Confidence 34555555555 9999999999999999944 3456888899999888876654 43 4566666653 333222
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
+||.|+..... +.+.+|+.+...|||||++++... .-+ .-..+.+..++.++.
T Consensus 102 ~~daiFIGGg~-----~i~~ile~~~~~l~~ggrlV~nai-----tlE-~~~~a~~~~~~~g~~ 154 (187)
T COG2242 102 SPDAIFIGGGG-----NIEEILEAAWERLKPGGRLVANAI-----TLE-TLAKALEALEQLGGR 154 (187)
T ss_pred CCCEEEECCCC-----CHHHHHHHHHHHcCcCCeEEEEee-----cHH-HHHHHHHHHHHcCCc
Confidence 79999987653 567899999999999999999643 111 122344556667773
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-06 Score=88.59 Aligned_cols=101 Identities=15% Similarity=0.146 Sum_probs=74.5
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccC--CCCCCceeEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL--PFPAFSFDIV 268 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~L--Pfpd~sFDlV 268 (595)
..++||+||||.|..+.++++. .....++.+|+++.+++.|++.. .++.++..|+... ..+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3568999999999999999887 23457788899999999998752 2467777775332 1235789999
Q ss_pred EEcCCCcccccC----HHHHHHHHHhhcCCCcEEEEEc
Q 007645 269 HCSRCLIPFTAY----NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 269 ~~s~vL~h~~~d----~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++-..- +.... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~d-p~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSSD-PVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCCC-CCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 985432 22211 2368999999999999998754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.7e-08 Score=80.94 Aligned_cols=91 Identities=21% Similarity=0.225 Sum_probs=60.0
Q ss_pred EecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchh---hhcccCCCCCCCCCccchhhccCccccccCCCC
Q 007645 446 MDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGS 521 (595)
Q Consensus 446 mDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~ 521 (595)
||+|||.|-++..|.+.+. .+|+-.|-. ..++.+-++.--. ..+.=-+.++.-+.+||+|++.++|.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~--~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG--ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT--CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-----
Confidence 7999999999999988722 233444433 4555555554322 1111122232223999999999999864
Q ss_pred CCCCCChhhhHHhhcccccCCcEEEE
Q 007645 522 NKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 522 ~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
-+...+|-|+-|+|||||+++|
T Consensus 74 ----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCHHHHHHHHHHHcCcCeEEeC
Confidence 4677899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.3e-06 Score=84.40 Aligned_cols=120 Identities=23% Similarity=0.311 Sum_probs=82.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CC--CCCCceeEEEEcCCC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LP--FPAFSFDIVHCSRCL 274 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LP--fpd~sFDlV~~s~vL 274 (595)
.+||||||.|.+...++.... ...+.|+|+....+..|.++ ++ ++.+...|+.. +. ++++++|.|+..+.=
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 799999999999999999854 45889999999888776544 44 67888877665 22 567999999987643
Q ss_pred cccccC--------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH--cCcEEEE
Q 007645 275 IPFTAY--------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA--LCYELIA 330 (595)
Q Consensus 275 ~h~~~d--------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~--~~w~~v~ 330 (595)
+|+.. ...+|.++.++|+|||.+.+.+- ...-.+.+.+.++. -+|+.+.
T Consensus 99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD------~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD------VEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-------HHHHHHHHHHHHHHSTTEEEE-
T ss_pred -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC------CHHHHHHHHHHHHhcCcCeEEcc
Confidence 55521 13889999999999999999872 11223345555555 3666654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=88.82 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=73.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccccc-CCCCCCceeEEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVH 269 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~-LPfpd~sFDlV~ 269 (595)
..++||+||||+|.++..+++.. ....++.+|+++++++.|++.. ..+.+...|... +...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 34599999999999999988774 2357888999999999998752 234555555432 222257899999
Q ss_pred EcCCCccccc--C--HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTA--Y--NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~--d--~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.... +... + ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDSTD-PVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 86542 2211 1 35788999999999999998743
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=84.17 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=81.2
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
+|||+|||+|..+..++.... ...++++|+|+.+++.|+++ ++ +..++..+... +. .+.||+|+|+--...-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~-~~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE-PL-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc-cc-CCceeEEEeCCCCCCC
Confidence 799999999999999998854 36899999999999999876 43 22333333211 22 2489999996533221
Q ss_pred c-----c-----CH--------------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC-cEEEEe
Q 007645 278 T-----A-----YN--------------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC-YELIAV 331 (595)
Q Consensus 278 ~-----~-----d~--------------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~-w~~v~~ 331 (595)
. + ++ ..++.++.+.|+|||.+++... +. .-+.+.+++.+.+ +..+..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g---~~----q~~~v~~~~~~~~~~~~v~~ 261 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG---LT----QGEAVKALFEDTGFFEIVET 261 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC---CC----cHHHHHHHHHhcCCceEEEE
Confidence 1 0 11 2568889999999999999653 21 1345778888888 444433
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.1e-06 Score=83.23 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=83.5
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd 262 (595)
.|...+....|+ +|||.|.|+|.++++|+..-.....+...|..+...+.|+++ ++ .+.+...|....-+++
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 455566677766 999999999999999997533334777889999999999887 22 2566667776665554
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.||+|+. .++ ++-.++..++.+|+|||.+++..|
T Consensus 163 -~vDav~L-----Dmp-~PW~~le~~~~~Lkpgg~~~~y~P 196 (256)
T COG2519 163 -DVDAVFL-----DLP-DPWNVLEHVSDALKPGGVVVVYSP 196 (256)
T ss_pred -ccCEEEE-----cCC-ChHHHHHHHHHHhCCCcEEEEEcC
Confidence 8999984 444 777899999999999999999887
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.3e-06 Score=85.28 Aligned_cols=98 Identities=22% Similarity=0.257 Sum_probs=78.7
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCC-CeEEEEcccccC---CCCCCceeEEEEcCCC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGI-PAFVAMLGTRRL---PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~-~~~~~~~d~~~L---Pfpd~sFDlV~~s~vL 274 (595)
.+||||||.|.+...+|+++.. ..+.|+++....+..|. +.++ ++.+.+.|+..+ =+++++.|-|+.++.=
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 7999999999999999999765 47888898887766554 5588 888888886544 2456699999988754
Q ss_pred cccccCH--------HHHHHHHHhhcCCCcEEEEEc
Q 007645 275 IPFTAYN--------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 275 ~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+|+... ..+|.++.++|+|||.|.+.+
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 676322 388999999999999999987
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.2e-06 Score=84.16 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.+..+ .++|||+|||+|..+..|+..-.....++.+|.++.+++.|+++ ++ .+.+..+++.
T Consensus 56 ~g~~L~~l~~~~~-----~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~ 130 (234)
T PLN02781 56 EGLFLSMLVKIMN-----AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL 130 (234)
T ss_pred HHHHHHHHHHHhC-----CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence 3445555444433 33899999999998888876522234788999999999998876 44 3567777653
Q ss_pred cC-C-----CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 RL-P-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~L-P-----fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.. + .++++||+|++..- .+....++.++.+.|||||.+++..
T Consensus 131 ~~L~~l~~~~~~~~fD~VfiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 131 SALDQLLNNDPKPEFDFAFVDAD----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHHHhCCCCCCCCEEEECCC----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 32 2 12468999997532 2234578899999999999988743
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-06 Score=87.38 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=75.0
Q ss_pred ceEEEECCCCc----HHHHHHhhcC-C--ceEEEEeecCcHHHHHHHHHc--------CC--------------------
Q 007645 202 RTALDMGCGVA----SFGGSMLSEN-I--LTLSFAPRDSHKAQIQFALER--------GI-------------------- 246 (595)
Q Consensus 202 r~VLDIGCGtG----~~a~~La~~g-v--~~~~v~~vD~s~~~l~~A~er--------g~-------------------- 246 (595)
-+|+..||.+| +++..|.+.. . ..+.|.+.|+++.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 58999999999 5666665541 1 146799999999999999753 10
Q ss_pred --------CeEEEEcccccCCCC-CCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 247 --------PAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 247 --------~~~~~~~d~~~LPfp-d~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+.|...++...+++ .+.||+|+|.++++|+.. ....++..+.+.|+|||+|++-.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 124445555544443 578999999999999863 34689999999999999987754
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.1e-06 Score=91.18 Aligned_cols=131 Identities=18% Similarity=0.237 Sum_probs=89.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR- 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~- 257 (595)
...++.+.+.+....+ .+|||+|||+|.++..|++.. ..+.++|+|+.+++.|+++ +. ++.+..+|+..
T Consensus 283 e~l~~~vl~~l~~~~~--~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLDPQPG--DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhcCCCC--CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 4455666666654444 489999999999999999874 3788999999999998865 43 47788887643
Q ss_pred ---CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 258 ---LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 258 ---LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+++.+++||+|++.--.. .....+..+.+ ++|++.++++-.|.... ..+..+. +.+|++..-
T Consensus 358 l~~~~~~~~~fD~Vi~dPPr~----g~~~~~~~l~~-~~~~~ivyvSCnp~tla------RDl~~L~-~~gY~l~~i 422 (443)
T PRK13168 358 FTDQPWALGGFDKVLLDPPRA----GAAEVMQALAK-LGPKRIVYVSCNPATLA------RDAGVLV-EAGYRLKRA 422 (443)
T ss_pred hhhhhhhcCCCCEEEECcCCc----ChHHHHHHHHh-cCCCeEEEEEeChHHhh------ccHHHHh-hCCcEEEEE
Confidence 345567899999875332 22345555555 69999999987543322 1133333 346776644
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.8e-06 Score=94.85 Aligned_cols=121 Identities=14% Similarity=0.112 Sum_probs=83.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccC-CCCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRL-PFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~L-Pfpd~sFDlV~~s~v 273 (595)
++|||+|||+|.++..++..|.. .++++|+|+.+++.|+++ ++ .+.+...|+.+. .-..++||+|++.--
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 48999999999999999987543 688899999999999875 44 367778775432 111468999999532
Q ss_pred Ccc----------cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 274 LIP----------FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 274 L~h----------~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
... ...+...++..+.++|+|||.++++....... ...+.+.+.++++...
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~-------~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFK-------MDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-------hhHHHHHhCCCeEEEE
Confidence 110 01123467888899999999999876532222 1245555556655533
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=77.65 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcc
Q 007645 181 DGADKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d 254 (595)
...+...+.+.+.+.. ..+ .+|||+|||+|.++..++.++. ..++++|.++.+++.++++ +. ++.+...|
T Consensus 35 p~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 35 PTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN 110 (199)
T ss_pred cCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch
Confidence 4455666666665542 233 3899999999999997666653 4788999999999888765 33 46777777
Q ss_pred ccc-CCCCCCceeEEEEcCCCcccccCHHHHHHHHHh--hcCCCcEEEEEcC
Q 007645 255 TRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~-LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~R--vLRPGG~lvls~p 303 (595)
+.. ++...++||+|++.--+.. .-...++..+.. +|+|+|.+++..+
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~--g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRK--GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCC--ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 543 3323457999999865322 122344555544 3799999998764
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=79.85 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=67.3
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeE-EEEcccccC-----CC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAF-VAMLGTRRL-----PF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~-~~~~d~~~L-----Pf 260 (595)
+..+.+.+... -...++||+|||+|.|+..++++|. ..+.++|++.+|+.........+. +...++..+ +.
T Consensus 63 L~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCC
Confidence 34444444431 1234899999999999999999864 478899999998887555544432 333333322 21
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.-..||+++++.++ .+..+.+.|+| |.+++..
T Consensus 140 d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 140 DFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred CceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 22367877766543 47789999999 7776544
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=84.40 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=77.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.+.+.+.+.+....+ .+|||+|||+|.++..+++.+ ..+.++|+++.+++.|+++ ++ ++.+.+.|+..+.
T Consensus 160 ~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~ 234 (315)
T PRK03522 160 QLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFA 234 (315)
T ss_pred HHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHH
Confidence 344444455443333 489999999999999999875 3788999999999988765 44 4788888876653
Q ss_pred C-CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC
Q 007645 260 F-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 306 (595)
Q Consensus 260 f-pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~ 306 (595)
. ..+.||+|++.--.. .....+.++...++|++.++++..+..
T Consensus 235 ~~~~~~~D~Vv~dPPr~----G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRR----GIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred HhcCCCCeEEEECCCCC----CccHHHHHHHHHcCCCeEEEEECCccc
Confidence 2 345799999874321 112233344445789998888876443
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-05 Score=79.83 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=98.7
Q ss_pred HHHHHHhhccc--cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHcC---------------
Q 007645 186 YIDKLKQYIPI--TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALERG--------------- 245 (595)
Q Consensus 186 yi~~L~~~l~~--~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~erg--------------- 245 (595)
.++.|.+.++. ......+||--|||.|.++..++.+|. .+.+.+.|--|+-. .....
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~ 116 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSF 116 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecc
Confidence 35677777663 222345899999999999999999976 67788988887532 22210
Q ss_pred --------------C-------------CeEEEEcccccCCCCC---CceeEEEEcCCCcccccCHHHHHHHHHhhcCCC
Q 007645 246 --------------I-------------PAFVAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 295 (595)
Q Consensus 246 --------------~-------------~~~~~~~d~~~LPfpd---~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPG 295 (595)
+ +.....+|...+.-++ ++||+|++.+-+ .-..+.-.++..|.++||||
T Consensus 117 sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-DTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 117 SNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-DTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred cCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-echHHHHHHHHHHHHHhccC
Confidence 0 0111122222222223 699999988644 55557779999999999999
Q ss_pred cEEEEEcCCCCCCCC---------chhHHHHHHHHHHcCcEEEEeecce
Q 007645 296 GYLVISGPPVQWPKQ---------DKEWADLQAVARALCYELIAVDGNT 335 (595)
Q Consensus 296 G~lvls~p~~~~~~~---------~~~w~~l~~la~~~~w~~v~~~~~~ 335 (595)
|+++=.+|-.+.... +..|+++..+++++||+.+..+..+
T Consensus 196 G~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i 244 (270)
T PF07942_consen 196 GYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEESSI 244 (270)
T ss_pred CEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEEee
Confidence 988888873322222 2239999999999999999775533
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=67.73 Aligned_cols=97 Identities=28% Similarity=0.358 Sum_probs=69.8
Q ss_pred EEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--C---eEEEEccccc--CCCCC-CceeEEEEcCCCc
Q 007645 204 ALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--P---AFVAMLGTRR--LPFPA-FSFDIVHCSRCLI 275 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~---~~~~~~d~~~--LPfpd-~sFDlV~~s~vL~ 275 (595)
+||+|||+|... .+.........+.++|.++.+++.+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999855 333321111355668999998888655431 1 3566666554 78877 489999 666665
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++.. ....+.++.++|+|+|.+++...
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEec
Confidence 6553 78899999999999999999875
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=81.99 Aligned_cols=103 Identities=18% Similarity=0.229 Sum_probs=76.1
Q ss_pred CcceEEEECCCCc----HHHHHHhhcCC----ceEEEEeecCcHHHHHHHHHc---------CCC---------------
Q 007645 200 TLRTALDMGCGVA----SFGGSMLSENI----LTLSFAPRDSHKAQIQFALER---------GIP--------------- 247 (595)
Q Consensus 200 ~~r~VLDIGCGtG----~~a~~La~~gv----~~~~v~~vD~s~~~l~~A~er---------g~~--------------- 247 (595)
..-+|.-+||++| ++|..|.+... ..+.|.+.|++...++.|+.- +++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4568999999999 67777776643 257999999999999998631 111
Q ss_pred ----------eEEEEcccccCCCCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 248 ----------AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 248 ----------~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.|...++..-++..+.||+|+|-+|++.+.. ....++..++..|+|||+|++-.
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 23333333332324577999999999998873 33589999999999999999954
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.09 E-value=3e-05 Score=79.29 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=87.3
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
+..|...+...+|+ +|||.|.|+|+++..|+..-.....+...|.++...+.|+++ |+ .+.+...|.....|
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 34566677778877 999999999999999997622233677779999999999876 44 47788888765444
Q ss_pred C---CCceeEEEEcCCCcccccCHHHHHHHHHhhc-CCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 261 P---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLL-RPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 261 p---d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvL-RPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
. ++.||.|+. .++ ++-.++..+.++| ||||+++...|.. ++ -.+.-+.+++.+|..+.
T Consensus 107 ~~~~~~~~DavfL-----Dlp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i-----eQ-v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLP-DPWEAIPHAKRALKKPGGRICCFSPCI-----EQ-VQKTVEALREHGFTDIE 168 (247)
T ss_dssp STT-TTSEEEEEE-----ESS-SGGGGHHHHHHHE-EEEEEEEEEESSH-----HH-HHHHHHHHHHTTEEEEE
T ss_pred cccccCcccEEEE-----eCC-CHHHHHHHHHHHHhcCCceEEEECCCH-----HH-HHHHHHHHHHCCCeeeE
Confidence 3 367999984 333 5666899999999 9999999987722 11 11223344556787663
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-05 Score=82.78 Aligned_cols=100 Identities=16% Similarity=0.090 Sum_probs=71.1
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccC----CCCCCceeEEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRL----PFPAFSFDIVHC 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~L----Pfpd~sFDlV~~ 270 (595)
.+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ ++ .+.+..+|+... ....++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 4899999999999987665542 3788899999999998865 44 357778876543 113468999999
Q ss_pred cCCCcccc--------cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFT--------AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~--------~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.--...-. .+...++..+.++|+|||.+++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 74321110 0123445567899999999998654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-05 Score=73.37 Aligned_cols=118 Identities=18% Similarity=0.108 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--- 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--- 259 (595)
.....+.+.+.+....|. .|||+|.|||-++..++++++.-.++..++.+.+.+..-.++...+.++.+|+..+.
T Consensus 33 Ss~lA~~M~s~I~pesgl--pVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 33 SSILARKMASVIDPESGL--PVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred cHHHHHHHHhccCcccCC--eeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 344556666666655544 899999999999999999999888999999999999998888888888888876654
Q ss_pred --CCCCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 --FPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 --fpd~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+..||.|+|.--+-.++-+ .-++|+++...|++||.++..+
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 567789999998766555522 2378999999999999999865
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=82.46 Aligned_cols=83 Identities=11% Similarity=0.095 Sum_probs=65.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd 262 (595)
..++.+.+.+....+. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..+++++
T Consensus 29 ~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 29 NILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHH
Confidence 3456666666555444 899999999999999999853 7889999999999998764 46788889988887764
Q ss_pred CceeEEEEcC
Q 007645 263 FSFDIVHCSR 272 (595)
Q Consensus 263 ~sFDlV~~s~ 272 (595)
-.+|.|+++-
T Consensus 104 ~~~~~vv~Nl 113 (272)
T PRK00274 104 LQPLKVVANL 113 (272)
T ss_pred cCcceEEEeC
Confidence 3368888874
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.2e-05 Score=90.52 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=82.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----C-----------------CeEEEEcccccCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I-----------------PAFVAMLGTRRLPF 260 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~-----------------~~~~~~~d~~~LPf 260 (595)
.+|||+|||+|.++..++.... ...++++|+|+.+++.|+++. + ++.+...|.... +
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 4899999999999999998743 247899999999999987551 1 367777776443 2
Q ss_pred CC--CceeEEEEcCCCccc-------------------------c--------cC----HHHHHHHHHhhcCCCcEEEEE
Q 007645 261 PA--FSFDIVHCSRCLIPF-------------------------T--------AY----NATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 261 pd--~sFDlV~~s~vL~h~-------------------------~--------~d----~~~~L~Ei~RvLRPGG~lvls 301 (595)
.+ ..||+|+|+--.+.- . ++ ...++.++.++|+|||.+++-
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 369999995432110 0 00 036788888999999999986
Q ss_pred cCCCCCCCCchhHHHHH-HHHHHcCcEEEE
Q 007645 302 GPPVQWPKQDKEWADLQ-AVARALCYELIA 330 (595)
Q Consensus 302 ~p~~~~~~~~~~w~~l~-~la~~~~w~~v~ 330 (595)
.. + ..=+.+. +++++.+|+.+.
T Consensus 278 iG---~----~q~~~v~~~l~~~~gf~~~~ 300 (1082)
T PLN02672 278 MG---G----RPGQAVCERLFERRGFRITK 300 (1082)
T ss_pred EC---c----cHHHHHHHHHHHHCCCCeeE
Confidence 53 1 1123466 588887877653
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.4e-05 Score=76.86 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=70.7
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCC---eEEE-------------------
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIP---AFVA------------------- 251 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~---~~~~------------------- 251 (595)
++...-....+|||||-.|.++..+++. .....+.|+|+++..++.|++.... ....
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~ 130 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQR 130 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccc
Confidence 3333333458999999999999999987 2234688999999999999875110 0000
Q ss_pred ----------------------Eccc-ccCCCCCCceeEEEEcCC--Ccccc-cCH--HHHHHHHHhhcCCCcEEEEE
Q 007645 252 ----------------------MLGT-RRLPFPAFSFDIVHCSRC--LIPFT-AYN--ATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 252 ----------------------~~d~-~~LPfpd~sFDlV~~s~v--L~h~~-~d~--~~~L~Ei~RvLRPGG~lvls 301 (595)
+.+. .-|.+....||+|.|..+ ..|+. .|. ..++..+.++|.|||+|++.
T Consensus 131 ~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 131 NEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0000 011233467999998543 22332 133 38899999999999999984
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-05 Score=83.99 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=75.8
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc---
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR--- 257 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~--- 257 (595)
+.+.+.+.+....+ .+|||+|||+|.++..|++.. ..+.++|+++.+++.|+++ ++ ++.+..+|+..
T Consensus 280 l~~~~~~~l~~~~~--~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~ 354 (431)
T TIGR00479 280 LVDRALEALELQGE--ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLP 354 (431)
T ss_pred HHHHHHHHhccCCC--CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHH
Confidence 34555555544333 389999999999999998863 3688999999999998875 33 57788888654
Q ss_pred -CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 -LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 -LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++.+++||+|+..-.-.. -...++..+.+ |+|++.++++.
T Consensus 355 ~~~~~~~~~D~vi~dPPr~G---~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 355 KQPWAGQIPDVLLLDPPRKG---CAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHhcCCCCCEEEECcCCCC---CCHHHHHHHHh-cCCCEEEEEcC
Confidence 2344568999997643211 12455666554 89999888874
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-05 Score=81.07 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=93.6
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEE-Eccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVA-MLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~-~~d~~~ 257 (595)
..+...+.++.....|+ .|||==||||+++....-. +..+.|.|++..|++-|+.+ ++. ..+. ..|+..
T Consensus 183 P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 183 PRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHHHhccccCC--EeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 44556666666666666 8999999999998776554 44778889999999999876 332 3233 348999
Q ss_pred CCCCCCceeEEEEcCCCc-----cc---ccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 258 LPFPAFSFDIVHCSRCLI-----PF---TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~-----h~---~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
+|+++++||.|++---.- .- .+-...+|..+.++|++||++++..| ...+ ..+...+|+.+
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-------~~~~----~~~~~~~f~v~ 326 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-------RDPR----HELEELGFKVL 326 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC-------Ccch----hhHhhcCceEE
Confidence 999999999999832110 10 01124789999999999999999987 1111 22445677776
Q ss_pred Ee
Q 007645 330 AV 331 (595)
Q Consensus 330 ~~ 331 (595)
..
T Consensus 327 ~~ 328 (347)
T COG1041 327 GR 328 (347)
T ss_pred EE
Confidence 54
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=4e-05 Score=78.75 Aligned_cols=84 Identities=14% Similarity=0.220 Sum_probs=66.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.+.+.+....+. +|||||||+|.++..|++++ ..++++|+++.+++.++++. .++.+..+|+..+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 45566677766555444 89999999999999999984 36888999999999998763 357888888888776
Q ss_pred CCCceeEEEEcCCC
Q 007645 261 PAFSFDIVHCSRCL 274 (595)
Q Consensus 261 pd~sFDlV~~s~vL 274 (595)
+ .||.|+++...
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 5 48999998654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.96 E-value=2e-06 Score=80.12 Aligned_cols=95 Identities=20% Similarity=0.318 Sum_probs=65.5
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCC-CCccchhhccCcccccc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTY-PRTYDLIHVSGIESLIK 517 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~ty-prtyDl~H~~~~~s~~~ 517 (595)
..-.+|||+|||.|.|+..|.+.+. +|+-.|-. ..+.. +-....-++-. .... +++||+|.|..+|.+..
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~--~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK---RNVVFDNFDAQ--DPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH---TTSEEEEEECH--THHCHSSSEEEEEEESSGGGSS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh---hhhhhhhhhhh--hhhccccchhhHhhHHHHhhcc
Confidence 3456999999999999999987766 44444433 23322 11111111101 1112 38999999999999763
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ---------d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ---------DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ---------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ---------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 5789999999999999999998654
|
... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.6e-05 Score=77.06 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=92.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C---CCeEEEEcccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G---IPAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g---~~~~~~~~d~~ 256 (595)
+.+.+.+.+.-.-......+|||...|-|.++...+++|.. .+..++.+++.++.|.-+ + ..+.++.+|+.
T Consensus 118 dP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 118 DPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred CcHHHHHhhhheeccccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 34444444433333323449999999999999999999763 333446667777777644 1 23567777765
Q ss_pred cC--CCCCCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 257 RL--PFPAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 257 ~L--Pfpd~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
++ .|+|.+||+|+----...... .-..+..|++|+|||||.++--+. ...+...+ ....+.+.+++.+|..+.
T Consensus 196 e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d-~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 196 EVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLD-LPKGVAERLRRVGFEVVK 274 (287)
T ss_pred HHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCC-hhHHHHHHHHhcCceeee
Confidence 54 488999999984211111110 124789999999999999987553 22333222 244566777888998765
Q ss_pred e
Q 007645 331 V 331 (595)
Q Consensus 331 ~ 331 (595)
.
T Consensus 275 ~ 275 (287)
T COG2521 275 K 275 (287)
T ss_pred e
Confidence 5
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=76.42 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=68.4
Q ss_pred eeecCCCCCc-ccccHHHHHHHHHhhcccc------CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH
Q 007645 169 YFTFPGGGTM-FADGADKYIDKLKQYIPIT------GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA 241 (595)
Q Consensus 169 ~~~fp~~g~~-F~~~a~~yi~~L~~~l~~~------~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A 241 (595)
.|.+|.+.-- --.+...|+..+.+++... .+...++||||||+|.+...|+.+.. ...++++|+++.+++.|
T Consensus 76 ~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A 154 (321)
T PRK11727 76 HWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASA 154 (321)
T ss_pred cccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHH
Confidence 3555555311 1134567887777776432 23456899999999988888876632 45799999999999999
Q ss_pred HHc-----CCC--eEEEE-cccccC----CCCCCceeEEEEcCCCcc
Q 007645 242 LER-----GIP--AFVAM-LGTRRL----PFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 242 ~er-----g~~--~~~~~-~d~~~L----Pfpd~sFDlV~~s~vL~h 276 (595)
+++ ++. +.+.. .+...+ ..+++.||+|+|+--++.
T Consensus 155 ~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~ 201 (321)
T PRK11727 155 QAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHA 201 (321)
T ss_pred HHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcC
Confidence 865 232 33322 222221 124678999999987643
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.7e-05 Score=74.12 Aligned_cols=133 Identities=19% Similarity=0.169 Sum_probs=82.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc--CCc------eEEEEeecCcHHHHHHHHHc----CC--CeEE
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE--NIL------TLSFAPRDSHKAQIQFALER----GI--PAFV 250 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~--gv~------~~~v~~vD~s~~~l~~A~er----g~--~~~~ 250 (595)
.....+.++.....+. .+||--||+|++..+.+.. ++. ...+.+.|+++.+++.|+++ +. .+.+
T Consensus 15 ~lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp HHHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred HHHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence 3444555555555444 8999999999999766544 222 12378999999999999876 33 3678
Q ss_pred EEcccccCCCCCCceeEEEEcCCCcccccC---H----HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 251 AMLGTRRLPFPAFSFDIVHCSRCLIPFTAY---N----ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 251 ~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d---~----~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
.+.|..++++.++++|.|+++--.-.-... . ..++.++.|+|++..+++++.. ..+++.++.
T Consensus 93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~-----------~~~~~~~~~ 161 (179)
T PF01170_consen 93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSN-----------RELEKALGL 161 (179)
T ss_dssp EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESC-----------CCHHHHHTS
T ss_pred EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECC-----------HHHHHHhcc
Confidence 888999999888999999997644221111 1 2668999999999555555431 124555555
Q ss_pred cCcEEEE
Q 007645 324 LCYELIA 330 (595)
Q Consensus 324 ~~w~~v~ 330 (595)
..|+...
T Consensus 162 ~~~~~~~ 168 (179)
T PF01170_consen 162 KGWRKRK 168 (179)
T ss_dssp TTSEEEE
T ss_pred hhhceEE
Confidence 5665553
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.3e-05 Score=80.55 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=69.6
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC-CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP-fpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..++..+ ..+.++|+++.+++.|+++ +. ++.+...|+.... -..++||+|++.--..
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 489999999999999999764 3788999999999988865 44 5778888875432 1124699999875432
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. -...++..+. .++|++.++++-.
T Consensus 312 G---~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 G---IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred C---CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 2 2234555554 4799999999864
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=77.07 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=78.6
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTR 256 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~ 256 (595)
|.+.+....-......++||.||+|.|..+.++++.. ....++.+|+++..++.|++.. .++.+...|..
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 4444443322222345689999999999999988863 2347888999999999998752 34566777654
Q ss_pred c-CCCCCCceeEEEEcCCCccccc------CHHHHHH-HHHhhcCCCcEEEEEcC
Q 007645 257 R-LPFPAFSFDIVHCSRCLIPFTA------YNATYLI-EVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~-LPfpd~sFDlV~~s~vL~h~~~------d~~~~L~-Ei~RvLRPGG~lvls~p 303 (595)
. +...+++||+|++-. ..++.. ....+++ .+.+.|+|||.+++...
T Consensus 168 ~~L~~~~~~yDvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 168 AELEKRDEKFDVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred HHHhhCCCCccEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 3 233457899999862 222110 1235777 89999999999988643
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.8e-05 Score=77.07 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.+... .++|||||+|+|..+..++..-.....++.+|.++...+.|++. |. .+.+..+++.
T Consensus 106 ~g~lL~~L~~~~~-----ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~ 180 (278)
T PLN02476 106 QAQLLAMLVQILG-----AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA 180 (278)
T ss_pred HHHHHHHHHHhcC-----CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 3444555544433 23899999999999999987522233578889999999988765 54 3666666642
Q ss_pred c-CC-C----CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 R-LP-F----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~-LP-f----pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. |+ + .+++||+|+.-. ...+...++..+.++|+|||.+++-.
T Consensus 181 e~L~~l~~~~~~~~FD~VFIDa----~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 181 ESLKSMIQNGEGSSYDFAFVDA----DKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred HHHHHHHhcccCCCCCEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 2 22 1 236899999653 23345678899999999999988743
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00012 Score=74.77 Aligned_cols=83 Identities=13% Similarity=0.135 Sum_probs=63.4
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfp 261 (595)
..++.+.+.+....+ .+|||||||+|.++..|++++. .+.++|+++.+++.++++. .++.+...|+..++++
T Consensus 16 ~i~~~i~~~~~~~~~--~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 16 SVIQKIVEAANVLEG--DVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP 90 (253)
T ss_pred HHHHHHHHhcCCCCc--CEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh
Confidence 455666666655444 4899999999999999999853 4788899999999988763 4577888888887765
Q ss_pred CCcee---EEEEcCCC
Q 007645 262 AFSFD---IVHCSRCL 274 (595)
Q Consensus 262 d~sFD---lV~~s~vL 274 (595)
+|| +|+++-.+
T Consensus 91 --~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 --DFPKQLKVVSNLPY 104 (253)
T ss_pred --HcCCcceEEEcCCh
Confidence 466 77776543
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.5e-05 Score=74.40 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=77.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~ 257 (595)
.+++..+.+... .++||+||+++|..+..|++.-.....++.+|.++...+.|++. |. .+.+..+++..
T Consensus 34 g~lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~ 108 (205)
T PF01596_consen 34 GQLLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE 108 (205)
T ss_dssp HHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH
T ss_pred HHHHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh
Confidence 344555554432 34899999999999999997633345788889999999998764 44 46777776432
Q ss_pred -CC-----CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 -LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 -LP-----fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++ .+.++||+|+.-. ...+...++..+.++|+|||.+++-.
T Consensus 109 ~l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 109 VLPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp HHHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred hHHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEcc
Confidence 22 1236899999754 23445678889999999999999864
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.8e-05 Score=73.20 Aligned_cols=151 Identities=18% Similarity=0.310 Sum_probs=94.7
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-Cchh----HHhhccc--hhhhc
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLS----VIYDRGL--IGVYH 491 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~----~i~eRGl--ig~~~ 491 (595)
+.|++++-.=.. +...++.+ ..|+|+|||.|.++.++.. .+- ..|+-.|.. .-+. .+-+.|+ +-.++
T Consensus 27 ~~~~~~~~d~l~-l~~~l~~g--~~VLDiGcGtG~~al~la~~~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~ 101 (187)
T PRK00107 27 ELWERHILDSLA-IAPYLPGG--ERVLDVGSGAGFPGIPLAIARPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVH 101 (187)
T ss_pred HHHHHHHHHHHH-HHhhcCCC--CeEEEEcCCCCHHHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEe
Confidence 478777733222 22334433 5799999999988876643 221 244555543 3332 2223444 22233
Q ss_pred ccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEe
Q 007645 492 DWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 492 ~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
.-.+.+.. ..+||+|-+.. -..+++++-++-|+|||||.+++-+.......+..+++.+-|++...
T Consensus 102 ~d~~~~~~-~~~fDlV~~~~-------------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 102 GRAEEFGQ-EEKFDVVTSRA-------------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ccHhhCCC-CCCccEEEEcc-------------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 32333333 46899998643 13467899999999999999999988888899999999999986443
Q ss_pred -ccC-CCCCCCceEEEEEec
Q 007645 572 -DKE-PGSNGREKILVATKS 589 (595)
Q Consensus 572 -~~~-~~~~~~~~~l~~~K~ 589 (595)
..| +|-++.-.+.|.+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 168 IELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred EEEecCCCCCcEEEEEEecC
Confidence 222 344444556777774
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.6e-05 Score=74.18 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=80.6
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEE-c
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAM-L 253 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~-~ 253 (595)
+....++..+....+ .++||+||.+.|..+..|+..-.....++.+|.++++.+.|+++ |.. +.... +
T Consensus 45 ~e~g~~L~~L~~~~~-----~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLARLSG-----PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHHhcC-----CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 344566666655542 34899999999999999987733234788999999999999876 443 33444 2
Q ss_pred cc-ccCC-CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 254 GT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 254 d~-~~LP-fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
|+ +.+. ...++||+|+.- +...+-..++..+.++|||||.+++-
T Consensus 120 dal~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 120 DALDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cHHHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 42 2222 456899999964 44445568999999999999999884
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=71.03 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=61.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C----CCeEEEEccccc-C---CCCCCceeE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G----IPAFVAMLGTRR-L---PFPAFSFDI 267 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g----~~~~~~~~d~~~-L---Pfpd~sFDl 267 (595)
...+|||+|||+|..+..++... ....++..|.++ .++..+.+ + ..+.+...+-.+ . ....+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34599999999998888888772 234666678877 66655443 2 223444433111 1 123468999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+++.|+. ..+....++.-+.++|+|+|.++++.+
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999994 455678899999999999999877765
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=67.99 Aligned_cols=100 Identities=9% Similarity=0.074 Sum_probs=68.4
Q ss_pred HHHhhccccCCCcceEEEECCCCcH-HHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC-CCcee
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVAS-FGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP-AFSFD 266 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~-~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp-d~sFD 266 (595)
.|.+.++... ..++||||||+|. ++..|++.|. ++.++|+++..++.|++++.+ +...|..+-.+. -+.+|
T Consensus 7 ~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~--~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 7 FIAENYEKGK--NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLN--AFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHhccccc--CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCe--EEECcCCCCCHHHHhcCC
Confidence 3445554433 3589999999995 8889998765 778889999999999998754 455565544322 35799
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+|.+.+.- .+....+.++.+-+ |.-+++.
T Consensus 80 liysirpp----~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 80 LIYSIRPP----RDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred EEEEeCCC----HHHHHHHHHHHHHc--CCCEEEE
Confidence 99988643 24455566666554 4445554
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.2e-05 Score=82.71 Aligned_cols=95 Identities=26% Similarity=0.314 Sum_probs=76.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc--
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-- 279 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-- 279 (595)
..+||+|||.|-.+.- + ....+.+.|++...+..|+..+.. ....+|+..+|+.+.+||.+++..+++|+..
T Consensus 47 sv~~d~gCGngky~~~----~-p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGV----N-PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred ceeeecccCCcccCcC----C-CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 3899999999954321 1 334678899999998888877764 4566788999999999999999999999873
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 280 YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....+++|+.|+|||||...+..
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEE
Confidence 33589999999999999987754
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00011 Score=72.70 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=69.6
Q ss_pred eEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc---------------CCCeEEEEcccccCCCCCCcee
Q 007645 203 TALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER---------------GIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er---------------g~~~~~~~~d~~~LPfpd~sFD 266 (595)
+.||+|.|+|.++..++.. +..+....++|..++.++.+.++ .....++++|....--+...||
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YD 164 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYD 164 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcc
Confidence 8999999999888877644 33444457889999999988765 1135667777776666678899
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.|||...- ....+++...|+|||.+++-.
T Consensus 165 aIhvGAaa-------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 165 AIHVGAAA-------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred eEEEccCc-------cccHHHHHHhhccCCeEEEee
Confidence 99998543 334567788899999998854
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=77.67 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=64.7
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-hhhh-cccCCCCCCCCCccchhhccCc
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~wce~f~typrtyDl~H~~~~ 512 (595)
.+......+|||+|||.|.++..|..... .|+-.|-. ..+..+-+++- +... .|. |.++....+||+|-++..
T Consensus 37 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~ 112 (251)
T PRK10258 37 MLPQRKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLA 112 (251)
T ss_pred hcCccCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECch
Confidence 34444567899999999999988865431 33334433 55555555542 1111 122 333322379999987665
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+. |. -+...+|-||-|+|+|||.+++.
T Consensus 113 l~-~~--------~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 113 VQ-WC--------GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred hh-hc--------CCHHHHHHHHHHHcCCCeEEEEE
Confidence 54 32 24678999999999999999987
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00025 Score=70.65 Aligned_cols=136 Identities=14% Similarity=0.096 Sum_probs=89.5
Q ss_pred HHHHHHHHhhccccCC--CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCC-
Q 007645 184 DKYIDKLKQYIPITGG--TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF- 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g--~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPf- 260 (595)
...++.+.+....... ..-++|||||=+...... .. ...+++.+|++.. ...+.+.|.-..|.
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~--~~fdvt~IDLns~----------~~~I~qqDFm~rplp 98 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TS--GWFDVTRIDLNSQ----------HPGILQQDFMERPLP 98 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCccc--cc--CceeeEEeecCCC----------CCCceeeccccCCCC
Confidence 3445555554432221 135899999986543322 12 2346888898651 22344556555554
Q ss_pred --CCCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcE-----EEEEcCCCC-CCCCchhHHHHHHHHHHcCcEEEE
Q 007645 261 --PAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGY-----LVISGPPVQ-WPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 261 --pd~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~-----lvls~p~~~-~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+++.||+|+|+.||..++. ..+..+..+.+.|+|+|. |+++.|..- -+.++..-+.+.++++.+||..+.
T Consensus 99 ~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 99 KNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred CCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence 3679999999999977762 235899999999999999 999988322 222233355788999999999987
Q ss_pred eec
Q 007645 331 VDG 333 (595)
Q Consensus 331 ~~~ 333 (595)
.+.
T Consensus 179 ~~~ 181 (219)
T PF11968_consen 179 YKK 181 (219)
T ss_pred EEe
Confidence 744
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.8e-05 Score=78.38 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=65.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHH---HHHHHHcCCC--eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQ---IQFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~---l~~A~erg~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
++|||+|||+|.++..-+++|. ..+.++|.|.-+ .+.++.++.. +.+..+.++.+.+|-...|+|++-++-.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 4999999999999998888874 356666665433 3344555654 45555556665555789999999654422
Q ss_pred cc--cCHHHHHHHHHhhcCCCcEEE
Q 007645 277 FT--AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 277 ~~--~d~~~~L~Ei~RvLRPGG~lv 299 (595)
+. .-...+|..=++-|+|||.++
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEc
Confidence 11 123466777789999999885
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00028 Score=73.15 Aligned_cols=167 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred CCCCCCCCCcccccccccCCCcchhhhcccccccccccCCeeecCCCCCcccccHHHHHHHHHhhccc--cCCCcceEEE
Q 007645 129 GYKIPVPWPESLSKIWHANMPYNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRTALD 206 (595)
Q Consensus 129 ~y~~P~~wP~s~d~vwy~n~p~~~L~~~k~~q~w~~~e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~--~~g~~r~VLD 206 (595)
|++..|..-.++|+| |.|.|-......+- .+..|.+-.|=.. .........+.|.+.+.. ..+..-+|||
T Consensus 70 G~~tGFDSGstLDYV-YrN~p~G~~~~Grl------iDr~yLnaiGWrG-IR~Rk~~l~~~i~~ai~~L~~~g~pvrIlD 141 (311)
T PF12147_consen 70 GLETGFDSGSTLDYV-YRNQPQGKGPLGRL------IDRNYLNAIGWRG-IRQRKVHLEELIRQAIARLREQGRPVRILD 141 (311)
T ss_pred chhcCCCCcchHhHH-hcCCCCCcchHHHH------HHHhhhcccchHH-HHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 678888889999987 77877654432211 1111111111100 000011112222222221 2244568999
Q ss_pred ECCCCcHHHHHHhhcCCc-eEEEEeecCcHHHHHHHH----HcCCC--eEEEEcccccC---CCCCCceeEEEEcCCCcc
Q 007645 207 MGCGVASFGGSMLSENIL-TLSFAPRDSHKAQIQFAL----ERGIP--AFVAMLGTRRL---PFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 207 IGCGtG~~a~~La~~gv~-~~~v~~vD~s~~~l~~A~----erg~~--~~~~~~d~~~L---Pfpd~sFDlV~~s~vL~h 276 (595)
|.||.|......+..... ..++.-.|.++..++..+ ++|+. +.|.+.|+.+. .--+-..++++.+..++-
T Consensus 142 IAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~El 221 (311)
T PF12147_consen 142 IAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYEL 221 (311)
T ss_pred eccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchhh
Confidence 999999877766655222 347778899999887654 56765 47888775432 211345799999998877
Q ss_pred cccCH--HHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FTAYN--ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~~d~--~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.++. ...|.-+.+.+.|||+++.+.-
T Consensus 222 F~Dn~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 222 FPDNDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 76433 3678999999999999999874
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.8e-05 Score=83.42 Aligned_cols=100 Identities=16% Similarity=0.092 Sum_probs=76.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC--CCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL--PFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L--Pfpd~sFDlV~~s~v 273 (595)
...+||||||.|.|+..++..+.. ..+.|+|++...+..|.++ ++ ++.+...++..+ -++++++|.|+.++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 458999999999999999998554 4788899998876665433 55 345555554322 277899999998876
Q ss_pred CcccccCH--------HHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFTAYN--------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
= +|+... ..+|.++.++|||||.+.+.+
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4 676321 388999999999999999987
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00028 Score=72.29 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=78.8
Q ss_pred HHHHHHHHHhhccccC-CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEc--
Q 007645 183 ADKYIDKLKQYIPITG-GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAML-- 253 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~-g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~-- 253 (595)
.+.+++.+.+.+.... -+...+||+|||+|..+..|+.. ..-..++++|.|++++..|.++ ++. +.+...
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 4667666666554321 12237999999999999998876 3356888999999999998876 222 222211
Q ss_pred c---cccCCCCCCceeEEEEcCCCccccc-------------------------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 254 G---TRRLPFPAFSFDIVHCSRCLIPFTA-------------------------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 254 d---~~~LPfpd~sFDlV~~s~vL~h~~~-------------------------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ....+...+.+|+++|+--...-.+ ..-.++.-+-|.|+|||.+++...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 1 2233456789999999753321110 001346668899999999999764
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00027 Score=68.98 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=78.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.++|+|+|||||.++...+-.|. ..+.++|+++.+++.++++. ..+.+...|+.+.. +.||.|+.+--|--
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 34899999999998888777764 37788999999999998773 36888988887764 66899998876654
Q ss_pred cccCH-HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYN-ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~-~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+.... ..+|..+.++- .++.+.... ....-+++.++..|..+...
T Consensus 121 ~~rhaDr~Fl~~Ale~s----~vVYsiH~a------~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 121 QRRHADRPFLLKALEIS----DVVYSIHKA------GSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred ccccCCHHHHHHHHHhh----heEEEeecc------ccHHHHHHHHHhcCCeEEEE
Confidence 44221 24555555443 234433211 12334667777777665544
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=80.88 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=64.2
Q ss_pred ceEEEECCCCcHHHHHHhhcC---CceEEEEeecCcHHHHHHH----HHcC--CCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSEN---ILTLSFAPRDSHKAQIQFA----LERG--IPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~g---v~~~~v~~vD~s~~~l~~A----~erg--~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
..|||||||+|.+....++++ .....+.+++-++.++... ++++ -.+.++..+++....| ..+|+|++-.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSEl 266 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSEL 266 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE--
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEec
Confidence 479999999998876655543 1355788888887766544 2333 3588899999888766 4899999843
Q ss_pred CCcccc--cCHHHHHHHHHhhcCCCcEEE
Q 007645 273 CLIPFT--AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 273 vL~h~~--~d~~~~L~Ei~RvLRPGG~lv 299 (595)
.- .+. +-....|....|.|||||.++
T Consensus 267 LG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 22 222 233467899999999998875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=74.84 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=63.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~L 258 (595)
..++.+.+.+....+. +|||||||+|.++..|++.+. .+.++|+++.+++.++++ + .++.+...|+...
T Consensus 23 ~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 4566677766655544 899999999999999998743 678899999999998875 2 3477888887666
Q ss_pred CCCCCceeEEEEcCCC
Q 007645 259 PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL 274 (595)
++ ..||.|+++...
T Consensus 98 ~~--~~~d~VvaNlPY 111 (294)
T PTZ00338 98 EF--PYFDVCVANVPY 111 (294)
T ss_pred cc--cccCEEEecCCc
Confidence 54 368999987544
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00027 Score=74.89 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=71.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-CCeEEEEcccccCCCCCCceeEEEEcCCCcccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT- 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~- 278 (595)
....+|+|.|.|..+..++.. +.. +.+++.....+-.+++.. ..+..+-+|..+- .|. -|+|++-++|+||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCC--CceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 468999999999999999984 443 444566666655555443 4556665664332 333 35999999999999
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++..++|+++...|+|||.+++.+.
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEec
Confidence 3446999999999999999999876
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.6e-05 Score=73.88 Aligned_cols=103 Identities=23% Similarity=0.275 Sum_probs=64.4
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhc--cchhhhcccCCCCC--CCC-Cccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR--GLIGVYHDWCEPFS--TYP-RTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eR--Glig~~~~wce~f~--typ-rtyDl~H~ 509 (595)
+.-..-.+|||+|||.|.++..+.+.- -- -+|+-.|-. +.+..+-++ +.....+-.+..+. .++ .+||+||+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 93 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPE-GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS 93 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence 333334689999999999998886531 00 133333433 556666555 11111111111111 133 79999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..+|.+.. +...++-++-|+|+|||++++.+
T Consensus 94 ~~~~~~~~---------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 94 DRVLQHLE---------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred echhhccC---------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 99988653 45779999999999999999854
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=3.8e-05 Score=75.54 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=89.0
Q ss_pred eecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeE
Q 007645 170 FTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAF 249 (595)
Q Consensus 170 ~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~ 249 (595)
--|.|.|++|--..+++.+.+.---+.......++||+|+|.|-.+..++.. .-.+.+.+.|..|....++.+.++.
T Consensus 82 NG~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ynVl 158 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKNYNVL 158 (288)
T ss_pred ccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcCCcee
Confidence 3466788888877777766554333433444679999999999999988765 2245566889999988888776543
Q ss_pred EEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCC-CcEEEEEc
Q 007645 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP-GGYLVISG 302 (595)
Q Consensus 250 ~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRP-GG~lvls~ 302 (595)
-..- .--.+-.||+|.|...|.- ..++..+|+++.-+|+| +|.++++-
T Consensus 159 ~~~e----w~~t~~k~dli~clNlLDR-c~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 159 TEIE----WLQTDVKLDLILCLNLLDR-CFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred eehh----hhhcCceeehHHHHHHHHh-hcChHHHHHHHHHHhccCCCcEEEEE
Confidence 2221 1112346999999888743 34788999999999999 88887653
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.56 E-value=8.8e-05 Score=79.27 Aligned_cols=94 Identities=17% Similarity=0.251 Sum_probs=60.6
Q ss_pred CeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCCCchhHH----hhccchhh----hcccCCCCCCCC-Cccchhh
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVI----YDRGLIGV----YHDWCEPFSTYP-RTYDLIH 508 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~~~l~~i----~eRGlig~----~~~wce~f~typ-rtyDl~H 508 (595)
.-..|||+|||.|+++..|..+ .|..+.+.| +++..+ -++|+..- ..|.. .++ +| .+||+|.
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~-~~~-~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADAL-NQP-FEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcc-cCC-CCCCCccEEE
Confidence 3467999999999999888653 233333222 334332 23354221 12222 122 34 8999999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+...+.++. +...+|-||-|+|||||.++|.+
T Consensus 192 s~~~~~h~~---------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 192 SMESGEHMP---------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ECCchhccC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 887776553 34578999999999999999853
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=97.55 E-value=4.2e-05 Score=79.39 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=68.9
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhH----HhhccchhhhcccCCCCCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPFSTYP 501 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~wce~f~typ 501 (595)
+.+.+.+. |+.| ..|||+|||.||++-.+.++ .+=|--|. -+++|+.. |-++||-.-..--+.-+...|
T Consensus 52 ~~~~~~~~--l~~G--~~vLDiGcGwG~~~~~~a~~~g~~v~git--lS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~ 125 (273)
T PF02353_consen 52 DLLCEKLG--LKPG--DRVLDIGCGWGGLAIYAAERYGCHVTGIT--LSEEQAEYARERIREAGLEDRVEVRLQDYRDLP 125 (273)
T ss_dssp HHHHTTTT----TT---EEEEES-TTSHHHHHHHHHH--EEEEEE--S-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--
T ss_pred HHHHHHhC--CCCC--CEEEEeCCCccHHHHHHHHHcCcEEEEEE--CCHHHHHHHHHHHHhcCCCCceEEEEeeccccC
Confidence 33444343 5666 58999999999999999777 55333332 23366654 457887654443344444455
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-+||-|=+-+.|.+. .+-+...++-+++|+|+|||.+++.
T Consensus 126 ~~fD~IvSi~~~Ehv-------g~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 GKFDRIVSIEMFEHV-------GRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp -S-SEEEEESEGGGT-------CGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCEEEEEechhhc-------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 699999888888875 3356678999999999999999985
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00013 Score=75.00 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=63.9
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhcc-------c--hhhhcccCCCCCCCC-Cccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRG-------L--IGVYHDWCEPFSTYP-RTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG-------l--ig~~~~wce~f~typ-rtyDl~H~ 509 (595)
..|||+|||.|.++..|... +-. +|+-.|-. +-|..+-+|. . |-..+.-.+.++ || .+||+|.+
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V~~ 151 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAITM 151 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEEEE
Confidence 57999999999998887543 111 34444544 6666665542 1 111221223343 45 79999998
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+..+.++. +...+|-||-|+|||||.+++.|
T Consensus 152 ~~~l~~~~---------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 152 GYGLRNVV---------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred ecccccCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 87776542 46789999999999999998874
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=72.36 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=60.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHH----hhccch--hhhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGli--g~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|||+|||.|.++..|.... ..|+-.|-. +.+..+ -+.|+- ....|. +.+ .++.+||+|-+..+|..
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~-~~~-~~~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDI-NAA-ALNEDYDFIFSTVVFMF 106 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc-hhc-cccCCCCEEEEeccccc
Confidence 489999999999999887653 245555544 444433 233442 111121 111 23568999998888764
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
. +.-....++-++.|.|+|||++++
T Consensus 107 ~-------~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 107 L-------QAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred C-------CHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4 233567899999999999998544
|
Part of a tellurite-reducing operon tehA and tehB |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=97.54 E-value=4.8e-05 Score=75.71 Aligned_cols=95 Identities=22% Similarity=0.338 Sum_probs=61.4
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCC-CCchhHHhh----ccchhhhcccCCCCC--CCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARK-SSTLSVIYD----RGLIGVYHDWCEPFS--TYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~-~~~l~~i~e----RGlig~~~~wce~f~--typrtyDl~H~~~~~ 513 (595)
+.|||+|||.|+++..+.+. .. +|.-.+- ++++..+-+ .|+-+..+--+.-+. .+|.+||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHH
Confidence 36999999999998888543 22 2222332 255554433 354321111111111 246799999998888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+.. +...+|-++.|+|+|||++++.+
T Consensus 78 ~~~~---------~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 78 HHIK---------DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HhCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 7553 35789999999999999999875
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00036 Score=71.45 Aligned_cols=110 Identities=12% Similarity=0.081 Sum_probs=76.3
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.+... .++||+||+++|..+..|+..-.....++.+|.++...+.|++. |+ .+.+..+++.
T Consensus 67 ~g~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 67 EGQFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred HHHHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 4455555555443 33899999999999999887632345788889999988888765 43 3566666542
Q ss_pred c-CCC------CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 257 R-LPF------PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 257 ~-LPf------pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
. |+- ..++||+|+.-. .......++..+.+.|+|||.+++-
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2 221 136899999653 3334457788889999999998773
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00018 Score=77.44 Aligned_cols=97 Identities=20% Similarity=0.238 Sum_probs=78.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.++|+|||.|....++.... ...+.++|.++.++..+... ++ ...++..+....||++++||.+-+..+..|
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred cccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 78999999999998887653 34667778888777665443 22 234466678888999999999999999988
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+ +...++.|+.|+++|||+++...
T Consensus 191 ~~-~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 191 AP-DLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred CC-cHHHHHHHHhcccCCCceEEeHH
Confidence 76 88999999999999999998854
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=76.08 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=72.6
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhH----HhhccchhhhcccCCCCCC--CCCccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV----IYDRGLIGVYHDWCEPFST--YPRTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGlig~~~~wce~f~t--yprtyDl~H~~~~~s~~ 516 (595)
+|||+|||.|.++.+|.+... .|+-.|.. .-+.. +-+.|+ . ++--+.-+.. .+..||+|-+..+|...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhC
Confidence 799999999999999877542 44445543 33333 334555 1 1111112222 25889999988887643
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe---CCh-----------HHHHHHHHhHhccCceeEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSP-----------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r---d~~-----------~~~~~~~~~~~~~~W~~~~~ 571 (595)
++-.+..++-+|-|.|+|||++++- +.. ---++++++.+. |++...
T Consensus 198 -------~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 -------NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred -------CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 3346778999999999999996552 111 113456666665 887765
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=7.9e-05 Score=76.81 Aligned_cols=98 Identities=15% Similarity=0.219 Sum_probs=61.7
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc----hhhhcccCCCCC-CCC-CccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IGVYHDWCEPFS-TYP-RTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig~~~~wce~f~-typ-rtyDl~H~~~~~s 514 (595)
-..|||+|||.|+++..|.... -..|+-.|-. +.+..+-+|-- +-.. -+.... .|| .+||+|++..++-
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~--~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFE--ANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEE--ECCcccCCCCCCCeEEEEEhhhHH
Confidence 3579999999999988885431 1234444433 45555544421 1111 111111 255 7999999877665
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
++ ..-+...+|-|+-|+|+|||.+++.|-
T Consensus 129 h~-------~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 129 HL-------SYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hC-------CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 43 122566799999999999999999753
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0031 Score=67.62 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=59.0
Q ss_pred eEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 444 NIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.|+|+|||.|.++.+|.+. |-. .|+-.|.. .-|..+ -+.|+-+.++ +...++.-+..||+|-++-.|-.-.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCc
Confidence 5999999999999988764 311 12223322 222211 1223333222 2334444468999999887663210
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
....-..+.++-++-|.|+|||.++|-
T Consensus 276 ----~~~~~~~~~~i~~a~~~LkpgG~L~iV 302 (342)
T PRK09489 276 ----QTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342)
T ss_pred ----cccHHHHHHHHHHHHHhcCcCCEEEEE
Confidence 011223568899999999999999874
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00038 Score=67.19 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=63.0
Q ss_pred HHHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc---------c
Q 007645 187 IDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---------R 256 (595)
Q Consensus 187 i~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~---------~ 256 (595)
+.++.+... ...+...+|||+||++|.|+..+++++.....+.++|+.+.. ....+...++|. .
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~ 82 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIR 82 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGG
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhh
Confidence 445555555 444456799999999999999999997556788888886541 001122222221 1
Q ss_pred c-CCCCCCceeEEEEcCCCcccc----cCH-------HHHHHHHHhhcCCCcEEEEEc
Q 007645 257 R-LPFPAFSFDIVHCSRCLIPFT----AYN-------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~-LPfpd~sFDlV~~s~vL~h~~----~d~-------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ++-..+.||+|+|-.+. ... .+. ...+.-+...|+|||.+++-.
T Consensus 83 ~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 83 KLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1 11112689999996532 111 111 133455567799999999876
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00013 Score=74.59 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=66.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCCCccchhhccCccc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
+....-..|||+|||.|.++.+|... |- ..|+=.|-. ..+..+-++++-=+..|- +.+. ...+||+|+++.+|-
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRWPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhh
Confidence 44333478999999999999988654 21 133444433 667777777632111221 2221 126899999988886
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.. +...+|-|+-|+|+|||++++.
T Consensus 101 ~~~---------d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 101 WVP---------EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hCC---------CHHHHHHHHHHhCCCCcEEEEE
Confidence 442 3467899999999999999986
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00033 Score=72.00 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=83.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--------------------cCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--------------------RGI 246 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--------------------rg~ 246 (595)
++.+.+.+....-++.++||||||.-..-..-+.. ..-+|+..|.++..++..++ .|.
T Consensus 43 L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~ 120 (256)
T PF01234_consen 43 LKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGK 120 (256)
T ss_dssp HHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTS
T ss_pred HHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCC
Confidence 44555555544334669999999986543222222 34567777877766542210 010
Q ss_pred --------------CeEEEEcccccC-CCCC-----CceeEEEEcCCCcccccCHH---HHHHHHHhhcCCCcEEEEEcC
Q 007645 247 --------------PAFVAMLGTRRL-PFPA-----FSFDIVHCSRCLIPFTAYNA---TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 247 --------------~~~~~~~d~~~L-Pfpd-----~sFDlV~~s~vL~h~~~d~~---~~L~Ei~RvLRPGG~lvls~p 303 (595)
-..++..|..+. |+.. +.||+|++++||+....+.+ .+++.+.++|||||.|++.+-
T Consensus 121 ~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 121 REKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 012444554433 3433 35999999999988776665 779999999999999999764
Q ss_pred -CC-CCCCCc--h-----hHHHHHHHHHHcCcEEEEee
Q 007645 304 -PV-QWPKQD--K-----EWADLQAVARALCYELIAVD 332 (595)
Q Consensus 304 -~~-~~~~~~--~-----~w~~l~~la~~~~w~~v~~~ 332 (595)
.. .|.... . .-+.+++.+++.++.+...+
T Consensus 201 l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 LGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp SS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred cCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 11 111101 0 13457888888899877654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=63.35 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=72.9
Q ss_pred HHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 184 DKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
+...+.+.+.+.. ..+ .++||++||+|.++..++++|.. .++.+|.++.+++.++++ +. .+.+...|+.
T Consensus 34 ~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 34 RVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 3344455555432 123 38999999999999999999753 678889999999888765 33 3567777763
Q ss_pred c-CC-C-CC-CceeEEEEcCCCcccccCHHHHHHHH--HhhcCCCcEEEEEcC
Q 007645 257 R-LP-F-PA-FSFDIVHCSRCLIPFTAYNATYLIEV--DRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~-LP-f-pd-~sFDlV~~s~vL~h~~~d~~~~L~Ei--~RvLRPGG~lvls~p 303 (595)
+ +. + .. ..||+|+.---+.. ......+..+ ..+|+++|.+++..+
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPPy~~--~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPPFFN--GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHhhccCCCceEEEECcCCCC--CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 3 22 1 12 24788887543321 1233444444 346889998888653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=68.01 Aligned_cols=106 Identities=9% Similarity=0.042 Sum_probs=75.3
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEcccc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTR 256 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~~ 256 (595)
|-+.|....-...+..++||=||.|.|..++++++..- +++-+|+++..++.+++. .+++.+... ..
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~ 133 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL 133 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh
Confidence 33444433323345567999999999999999999852 788899999999999884 223333331 11
Q ss_pred cCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.-..++||+|++-.. ....+.+.+.|.|+|||.++....
T Consensus 134 --~~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 134 --DLDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred --hccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECCC
Confidence 112368999997642 235678999999999999999754
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0017 Score=67.48 Aligned_cols=110 Identities=22% Similarity=0.214 Sum_probs=68.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc---CCCeEEE--Ecc--cccC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER---GIPAFVA--MLG--TRRL 258 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~--~~d--~~~L 258 (595)
+.++...++... .++|||+|||+|.......+. + ...+++.+|.|+.|++.++.- ....... ... ....
T Consensus 22 l~El~~r~p~f~--P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 98 (274)
T PF09243_consen 22 LSELRKRLPDFR--PRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFL 98 (274)
T ss_pred HHHHHHhCcCCC--CceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccc
Confidence 455555555443 459999999999766655544 2 345788899999999987653 2111100 001 1122
Q ss_pred CCCCCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. ..|+|+++++|..+.+. ...+++.+.+.+.+ +++|++|
T Consensus 99 ~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 99 PFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred cCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence 332 23999999999888741 12455555555544 9999987
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=72.81 Aligned_cols=122 Identities=15% Similarity=0.167 Sum_probs=68.2
Q ss_pred ccChhhhhhhhhh-----HHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhH
Q 007645 409 KNGYDVFEADSRR-----WRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSV 480 (595)
Q Consensus 409 ~~~~~~f~~d~~~-----w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~ 480 (595)
|.+.++|+.-... +....+...+.|...+.. .-.+|||+|||.|.+++.|.+. +.=..+|+-.|-. +.+..
T Consensus 49 ~d~~~~~~ar~~fl~~g~y~~l~~~i~~~l~~~l~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 49 GDNKEMMQARRAFLDAGHYQPLRDAVANLLAERLDE-KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CcCHHHHHHHHHHHHCCChHHHHHHHHHHHHHhcCC-CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 5566666644333 222222222223322332 3356999999999999988542 1101245555544 67777
Q ss_pred Hhhccc-hhh-hcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 481 IYDRGL-IGV-YHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 481 i~eRGl-ig~-~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+-+|.- +.. ..|-. .++ ++ .+||+|.+. |+. ..+-|+.|+|+|||++|+..
T Consensus 128 A~~~~~~~~~~~~d~~-~lp-~~~~sfD~I~~~--~~~--------------~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 128 AAKRYPQVTFCVASSH-RLP-FADQSLDAIIRI--YAP--------------CKAEELARVVKPGGIVITVT 181 (272)
T ss_pred HHHhCCCCeEEEeecc-cCC-CcCCceeEEEEe--cCC--------------CCHHHHHhhccCCCEEEEEe
Confidence 766531 111 11111 122 33 799999742 221 14579999999999999873
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00017 Score=78.40 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=63.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCC-CCchhHHhhcc--chhhhcccCCCCCCCCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARK-SSTLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~-~~~l~~i~eRG--lig~~~~wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||.|+++..+.+. .+ .|+-.|- +.++..+-+|. +- .+--+..+...+.+||+|.+..+|.+.
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~---~V~giDlS~~~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~Ivs~~~~ehv-- 241 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV---SVVGVTISAEQQKLAQERCAGLP--VEIRLQDYRDLNGQFDRIVSVGMFEHV-- 241 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHhccCe--EEEEECchhhcCCCCCEEEEeCchhhC--
Confidence 58999999999999888653 33 3444443 36777666653 21 111111222235789999998888754
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
..-....++-++.|+|+|||.+++.
T Consensus 242 -----g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 242 -----GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred -----ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2234668999999999999999986
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00053 Score=74.58 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=71.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+|||++||+|.++..++.... ...++++|+++.+++.++++ ++. ..+...|+..+....+.||+|+..-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 3799999999999999976521 34688999999999988765 443 4466677654321146799999753
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ..+..++..+.+.+++||.++++..
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 2 2446788887888999999999854
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0022 Score=62.33 Aligned_cols=122 Identities=15% Similarity=0.159 Sum_probs=80.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH----HHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF----ALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~----A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
...+||||||+|..+..|++......-....|+++.+.+. |+.++..+..++.|...- ...++.|+++-+.-...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 4479999999999999998874344455677999988765 455666666666664322 22388999887654432
Q ss_pred ccc----------------C----HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 277 FTA----------------Y----NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 277 ~~~----------------d----~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
-.+ + .+.++..+..+|.|.|.|++..-..+.. +++-++.+..+|...
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p------~ei~k~l~~~g~~~~ 189 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP------KEILKILEKKGYGVR 189 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH------HHHHHHHhhccccee
Confidence 111 1 1256777888899999999987533332 234456666666543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0014 Score=72.98 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=79.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC-CCCCceeEEE----E
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP-FPAFSFDIVH----C 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP-fpd~sFDlV~----~ 270 (595)
..+|||++||.|.=+..+++.--....++++|+++..++..+++ |+. +.+...|...++ ...+.||.|+ |
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 34999999999988888887622223688899999988777655 554 455666665543 2246799999 5
Q ss_pred cCC--Cc-------cccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc
Q 007645 271 SRC--LI-------PFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324 (595)
Q Consensus 271 s~v--L~-------h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~ 324 (595)
+.. +. .|.. -...+|..+.+.|||||+++.++-.....+++ ..++.++++.
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE---~vV~~~L~~~ 261 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQ---AVCLWLKETY 261 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHH---HHHHHHHHHC
Confidence 532 11 1110 11367899999999999999998644333222 3355566554
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=65.38 Aligned_cols=139 Identities=13% Similarity=0.131 Sum_probs=87.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEcc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d 254 (595)
..|.+.+...........++||=||-|.|..+..+++.. ...+++.+|+++..++.|++. ..++.++..|
T Consensus 60 ~~y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D 138 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD 138 (246)
T ss_dssp HHHHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST
T ss_pred HHHHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh
Confidence 445555544333333346699999999999999999874 234788899999999999864 2357788777
Q ss_pred cccC-CCCCC-ceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 255 TRRL-PFPAF-SFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 255 ~~~L-Pfpd~-sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
.... .-..+ .||+|+.-..- .... ....+++.+.+.|+|||.+++....... .......+.+.+++...
T Consensus 139 g~~~l~~~~~~~yDvIi~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~--~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 139 GRKFLKETQEEKYDVIIVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL--HPELFKSILKTLRSVFP 213 (246)
T ss_dssp HHHHHHTSSST-EEEEEEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT--THHHHHHHHHHHHTTSS
T ss_pred hHHHHHhccCCcccEEEEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc--chHHHHHHHHHHHHhCC
Confidence 5332 11223 89999974322 1111 1258899999999999999997632111 12223445555555444
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00018 Score=76.34 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=57.2
Q ss_pred eeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhccc-----hhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGL-----IGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
+.|+|+|||.|.|+..|.... -.|.-|=|.... .+...+ .+.+ |-..+.=-|.++. +.+||+|++.+++-+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 689999999999998886542 222222222110 111111 1110 1011000122333 689999999888753
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. -+...+|-++-|.|+|||.+|+.
T Consensus 202 ~---------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 202 R---------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred c---------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 3 45678999999999999999985
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00062 Score=65.70 Aligned_cols=123 Identities=11% Similarity=0.082 Sum_probs=73.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchh--hhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG--VYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig--~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
++|||+|||.|.++.++....- .|+-.|-. ..+..+-+ .|+-. +..|+.+. .+.+||+|-++-.|..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---VRGKFDVILFNPPYLP 94 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---cCCcccEEEECCCCCC
Confidence 4699999999999988876532 34444432 33332222 12211 12233332 2469999988876643
Q ss_pred ccCCCC------------CCCCCChhhhHHhhcccccCCcEEEEeCChHH-HHHHHHhHhccCceeEEe
Q 007645 516 IKNPGS------------NKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEV-IDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 516 ~~~~~~------------~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~-~~~~~~~~~~~~W~~~~~ 571 (595)
..+... ...+..++.+|-|+.|+|+|||.+++.+.... ..++.++++..-++....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 321100 01123367889999999999999998754433 556666666666766655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00011 Score=72.51 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=60.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhH----Hhhccch---hhhcccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSV----IYDRGLI---GVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~----i~eRGli---g~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
-+|||+|||.|.++..|.+... +|.-.|-. ..+.. +-++|+- ....|..+ + .++.+||+|-+..+|-
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~ 106 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN-L-TFDGEYDFILSTVVLM 106 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh-C-CcCCCcCEEEEecchh
Confidence 4799999999999999987631 44444443 33332 2334442 12233322 2 2357899999887764
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.. +.-....++-+|-|.|+|||++++
T Consensus 107 ~~-------~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 107 FL-------EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hC-------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 32 334567899999999999999654
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0038 Score=65.20 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=76.1
Q ss_pred cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccC-CCCCCcee
Q 007645 197 TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL-PFPAFSFD 266 (595)
Q Consensus 197 ~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~L-Pfpd~sFD 266 (595)
..+..++||-||-|.|..++.+++... ...++.+|+++..++.|++.- ..+.+...|.... .-..++||
T Consensus 73 ah~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 73 AHPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred hCCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCC
Confidence 344456999999999999999999853 457888899999999999862 2345666664333 21234899
Q ss_pred EEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|++-..= +... ....+++.+.|.|+++|.++...-
T Consensus 152 vIi~D~td-p~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 152 VIIVDSTD-PVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EEEEcCCC-CCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99974321 2110 125899999999999999999843
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0003 Score=66.96 Aligned_cols=134 Identities=17% Similarity=0.321 Sum_probs=91.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-CCC-------eEEEEcc--cccCCCCCCceeEEEEc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-GIP-------AFVAMLG--TRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-g~~-------~~~~~~d--~~~LPfpd~sFDlV~~s 271 (595)
++||++|.|.-.++..|.....+..++.-.|-++..++..++- ..+ ....... ..+.....++||.|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 5899999998777777776656666777778888777655432 111 1011111 11122344689999999
Q ss_pred CCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec-ceeEeecc
Q 007645 272 RCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG-NTVIWKKP 341 (595)
Q Consensus 272 ~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~-~~~iw~K~ 341 (595)
.|+ -+.+....++.-|.+.|||.|..++..| .+......+.+.+...+|.....+. +..||++-
T Consensus 111 DCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsP-----RRg~sL~kF~de~~~~gf~v~l~enyde~iwqrh 175 (201)
T KOG3201|consen 111 DCL-FFDEHHESLVDTIKSLLRPSGRALLFSP-----RRGQSLQKFLDEVGTVGFTVCLEENYDEAIWQRH 175 (201)
T ss_pred cch-hHHHHHHHHHHHHHHHhCcccceeEecC-----cccchHHHHHHHHHhceeEEEecccHhHHHHHHH
Confidence 998 5555667889999999999999988877 2233355677777888888776654 45678763
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00034 Score=69.93 Aligned_cols=93 Identities=19% Similarity=0.304 Sum_probs=57.3
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhh----ccc--hhhhcccCCCCCCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYD----RGL--IGVYHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~e----RGl--ig~~~~wce~f~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|.++..|.+. .|..+-+.| +.+..+-+ .++ +-.++.=.+.++ +| .+||+|++.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 121 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE----NMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIG 121 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEe
Confidence 57999999999999888542 233322211 33333222 222 111211112222 44 799999987
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..+.... +...+|-|+-|+|+|||.+++.+
T Consensus 122 ~~l~~~~---------~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 122 FGLRNVP---------DYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cccccCC---------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 6665332 34578999999999999999865
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00093 Score=70.11 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=75.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc------CCceEEEEeecCcHHHHHHHHHc----CCC---eEE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE------NILTLSFAPRDSHKAQIQFALER----GIP---AFV 250 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~------gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~ 250 (595)
....+.+.+++....+. +|||-.||+|.|...+.+. ......+.|.|+++.++..|+.+ +.. ..+
T Consensus 32 ~~i~~l~~~~~~~~~~~--~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGD--SVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTE--EEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccc--eeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 44556666666544433 8999999999998887763 12346889999999998887644 222 235
Q ss_pred EEcccccCCC-C-CCceeEEEEcCCCccc--c-----c-------------CHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 251 AMLGTRRLPF-P-AFSFDIVHCSRCLIPF--T-----A-------------YNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 251 ~~~d~~~LPf-p-d~sFDlV~~s~vL~h~--~-----~-------------d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
...|....+. . .+.||+|+++--+... . . ..-.++..+.+.|++||++++..|.
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~ 185 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN 185 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence 5666433332 2 4789999997655433 1 0 0125788899999999999998873
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00021 Score=69.68 Aligned_cols=112 Identities=14% Similarity=0.224 Sum_probs=67.7
Q ss_pred eeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHH----hhccc--hhhhc-ccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVI----YDRGL--IGVYH-DWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i----~eRGl--ig~~~-~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++..|.. .+- ..|+-.|.. +.+.++ -+.|+ +-+++ |. +.+ ....+||+|-+.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~-~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDF-QHEEQFDVITSRA-L 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhc-cccCCccEEEehh-h
Confidence 5899999999987765531 111 223333433 333222 22343 11111 11 112 1247999997654 1
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccC-ceeEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVR-WTAAVH 571 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~-W~~~~~ 571 (595)
..+.+++-++.|+|+|||.+++........++..+.+++| |.....
T Consensus 119 ------------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 119 ------------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred ------------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEe
Confidence 3456788889999999999999987777788888776654 444433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0005 Score=71.82 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCC-CCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTY-PRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~ty-prtyDl~H~~~~~s~~ 516 (595)
.+|||+|||.|.++.++..... -.|+-.|-. ..+..+.++ |+-..+..-+...... +..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~-- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE-- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH--
Confidence 6899999999998777655432 133444433 444444333 2211122222212223 36899999865433
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~ 571 (595)
.+..++-++-|+|+|||++|++.-. +-.+++.+..++- |+....
T Consensus 237 ----------~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 ----------VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred ----------HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 2346888999999999999998532 3345556655555 765544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00041 Score=68.78 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=59.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc---chhhhcccCCCCCCCCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG---LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG---lig~~~~wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||.|.|...|...-- .-.|+-.|.. ..+..+-++. +.-+..|. +.++..+.+||+|.+..++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~-- 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC-- 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc--
Confidence 5799999999999998865310 0112222222 3333333332 11111111 2233334889999998887643
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+...+|-++.|+|+|||.+++..
T Consensus 112 -------~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 -------DDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred -------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 346779999999999999999863
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0005 Score=73.10 Aligned_cols=95 Identities=12% Similarity=0.184 Sum_probs=65.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----chhhhcccC---CCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIGVYHDWC---EPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~wc---e~f~typrtyDl~H~~~~~s 514 (595)
..|||+|||.|.|+..|.... .+|+-.|.. ..+.++-++. +..-+.-.| |.++..+.+||+|=+..++.
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 379999999999998887643 245555655 5666665442 211111112 33333347999999988888
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.. +.+.+|-|+-|+|+|||.+++.+
T Consensus 210 Hv~---------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 210 HVA---------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred hcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 663 45789999999999999999974
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00032 Score=69.38 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=74.6
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchh---hhcccCCCCCC-C-CCccchhhcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEPFST-Y-PRTYDLIHVS 510 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~~wce~f~t-y-prtyDl~H~~ 510 (595)
-.+|||+|||.|.++..|... |- -+|+-.|-. ..+..+-+ .|+-. +..|..+.++. + +.+||+|-+.
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 478999999999998888543 21 123333322 33332221 23211 11122123332 4 3789999764
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeEEe
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
... .|........+.....+|-|+.|+|+|||.+++. +.......+.+.+..--|.+.+.
T Consensus 119 ~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 119 FPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred CCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 332 2221111223344678999999999999999996 67777777777776666776643
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00021 Score=73.01 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=63.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhh---c-ccCCCCCCC-CCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVY---H-DWCEPFSTY-PRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~---~-~wce~f~ty-prtyDl~H~~~~ 512 (595)
..|||+|||.|.++..|.... -+|+-.|-. ..+..+-++ |+..-+ + |.. .+..+ +.+||+|.+..+
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~-~l~~~~~~~fD~V~~~~v 121 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ-DIAQHLETPVDLILFHAV 121 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH-HHhhhcCCCCCEEEehhH
Confidence 589999999999999997764 245555544 555554433 432211 1 111 12222 489999999988
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.+.. +...+|-|+-|+|+|||.+++-
T Consensus 122 l~~~~---------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 122 LEWVA---------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHhhC---------CHHHHHHHHHHHcCCCeEEEEE
Confidence 87553 3457899999999999999874
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00015 Score=63.63 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=59.4
Q ss_pred eeEEecccchhHHHhhhcC--CCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCC---CCCCCccchhhccC-
Q 007645 443 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPF---STYPRTYDLIHVSG- 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f---~typrtyDl~H~~~- 511 (595)
..|||+|||.|.++.+|.+ ...= |+-.|-. ..+..+-+| ++-.-++=-+..+ ...+..||+|.+..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~ 79 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF 79 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence 4689999999999999987 3332 2333332 344433332 3322222122233 33455699999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+..+. +.-....+|=++-+.|||||.++|++
T Consensus 80 ~~~~~~------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLL------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCC------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccc------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 222222 11234467888999999999999975
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00058 Score=69.59 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhcc-----chhhhcccCCCCCCCCCccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~wce~f~typrtyDl~H~ 509 (595)
+....-.+|+|+|||.|.++..|... |- -+|+=.|-. .-+..+-++- +.+-+.+| . .+.+||+|++
T Consensus 27 ~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~----~-~~~~fD~v~~ 99 (258)
T PRK01683 27 VPLENPRYVVDLGCGPGNSTELLVERWPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW----Q-PPQALDLIFA 99 (258)
T ss_pred CCCcCCCEEEEEcccCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc----C-CCCCccEEEE
Confidence 33344578999999999999888643 11 123333332 3333333331 11212112 1 2369999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC--Ch--HHHHHHHHhHhccCcee
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SP--EVIDKVSRIANTVRWTA 568 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd--~~--~~~~~~~~~~~~~~W~~ 568 (595)
+.+|.... +...+|-+|-|+|+|||.+++.- .. .....+++++....|..
T Consensus 100 ~~~l~~~~---------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 100 NASLQWLP---------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ccChhhCC---------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 98886432 35679999999999999999862 11 11223445555555653
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00073 Score=64.84 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=82.0
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh---------hccchhhhcccCCCCCCCCCccchhhccC
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---------DRGLIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~---------eRGlig~~~~wce~f~typrtyDl~H~~~ 511 (595)
-..|||+|||.|.++..|.... -+|.-.|-. +.+..+- +||+.-.-+|+.+.+.. .+||+|=++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n~ 98 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFNP 98 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEECC
Confidence 3579999999999999997663 244444433 4444431 22243345666655533 4899985554
Q ss_pred ccccccCCC-------------CCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 512 IESLIKNPG-------------SNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 512 ~~s~~~~~~-------------~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
-|.... +. .......+..++-++.|+|+|||.+++--. ....+++.+++...-|+......+.-.
T Consensus 99 p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 177 (188)
T PRK14968 99 PYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFP 177 (188)
T ss_pred CcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeeeecccC
Confidence 432210 00 001122356789999999999998876422 223456777787778876554333344
Q ss_pred CCCceEEEEEe
Q 007645 578 NGREKILVATK 588 (595)
Q Consensus 578 ~~~~~~l~~~K 588 (595)
.+.-.+++.+|
T Consensus 178 ~~~~~~~~~~~ 188 (188)
T PRK14968 178 FEELIVLELVK 188 (188)
T ss_pred CceEEEEEEeC
Confidence 44334444443
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0008 Score=65.40 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=67.7
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchhhhcccCC-CCCCCCCccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGVYHDWCE-PFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce-~f~typrtyDl~H~~~~~s 514 (595)
-.+|+|+|||.|.++.++... |- -+|+-.|-. ..+..+-+ .|+-. +.-.+. ....++..||+|.+++..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 358999999999998877542 21 123333332 33333322 23211 111111 122345789999865432
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCce
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~ 567 (595)
..+..++-++-|.|+|||.+++.+ ..+..+++.++++...++
T Consensus 108 -----------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 -----------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred -----------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 346678889999999999999975 445567777787777774
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0054 Score=65.52 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=103.2
Q ss_pred CCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--
Q 007645 167 GPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-- 244 (595)
Q Consensus 167 ~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-- 244 (595)
+-.|.+.-...+|..+...-...+++.... |. +|||+=||.|.|+..++..+-.. +.++|+++.+++..+++
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~--GE--~V~DmFAGVGpfsi~~Ak~g~~~--V~A~diNP~A~~~L~eNi~ 232 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELVKE--GE--TVLDMFAGVGPFSIPIAKKGRPK--VYAIDINPDAVEYLKENIR 232 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHHHHhhhcC--CC--EEEEccCCcccchhhhhhcCCce--EEEEecCHHHHHHHHHHHH
Confidence 344444444556666655555566665544 44 99999999999999999987642 78889999999888775
Q ss_pred --CCC--eEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHH
Q 007645 245 --GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 320 (595)
Q Consensus 245 --g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~l 320 (595)
+.. +....+|+...+...+.||-|++...- ....++..+.+.+++||.+-+-..-..-...+.....+...
T Consensus 233 LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~-----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~ 307 (341)
T COG2520 233 LNKVEGRVEPILGDAREVAPELGVADRIIMGLPK-----SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSA 307 (341)
T ss_pred hcCccceeeEEeccHHHhhhccccCCEEEeCCCC-----cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHH
Confidence 332 557788887777655889999976422 44678889999999999998865411111111134567777
Q ss_pred HHHcCc
Q 007645 321 ARALCY 326 (595)
Q Consensus 321 a~~~~w 326 (595)
+.+++.
T Consensus 308 ~~~~~~ 313 (341)
T COG2520 308 ARKGGY 313 (341)
T ss_pred HhhccC
Confidence 777765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0005 Score=72.84 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=57.5
Q ss_pred eeEEecccchhHHHhhhcCCCe-EEEEeccCCCC-CchhHHhh----ccchhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKS-STLSVIYD----RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~v-wvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
+.|+|+|||.|.++.++..... -|.-|=|...- .+...+-. .+-+....-=-|.++. +.+||+|-+.+++-++
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYHR 201 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhcc
Confidence 7899999999999888765432 23333333211 12111110 0111111000011221 2589999999888644
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-+..+.|-|+-|+|||||.+|+.
T Consensus 202 ---------~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 202 ---------KSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ---------CCHHHHHHHHHHhcCCCCEEEEE
Confidence 45678999999999999999985
|
Known examples to date are restricted to the proteobacteria. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=62.79 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=80.7
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhcccc--CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPIT--GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~--~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
.+.....|.+.. ..+..+...+.+.+++... .+. ++||+-||+|.++.+.+++|.. .++-+|.+...++..++
T Consensus 9 kgr~l~~p~~~~-~RPT~drvrealFniL~~~~~~g~--~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 9 KGRKLKTPKGDN-TRPTTDRVREALFNILQPRNLEGA--RVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TT-EEE-TT--T-S-SSSHHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHH
T ss_pred CCCEecCCCCCC-cCCCcHHHHHHHHHHhcccccCCC--eEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHH
Confidence 344555555432 2234456666777777643 444 8999999999999999999865 56668999998888776
Q ss_pred c----CCC--eEEEEcccc-cC---CCCCCceeEEEEcCCCcccccC--HHHHHHHHH--hhcCCCcEEEEEcC
Q 007645 244 R----GIP--AFVAMLGTR-RL---PFPAFSFDIVHCSRCLIPFTAY--NATYLIEVD--RLLRPGGYLVISGP 303 (595)
Q Consensus 244 r----g~~--~~~~~~d~~-~L---Pfpd~sFDlV~~s~vL~h~~~d--~~~~L~Ei~--RvLRPGG~lvls~p 303 (595)
+ +.. ..+...|.. .+ ......||+|++---. ... ...++..+. .+|+++|.+++...
T Consensus 84 N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY---~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 84 NLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPY---AKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--ST---TSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCc---ccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 6 332 566666632 22 1246889999987533 322 256677766 78999999999764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0021 Score=63.84 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=76.1
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER- 244 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er- 244 (595)
.+-.+.+.-...+|..+...-..++.+.+. . ..+|||+-||.|.|+..+++.+ ....+.++|+++.+++..+++
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~--~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTERRRIANLVK--P--GEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp TTEEEEEETTTS---GGGHHHHHHHHTC----T--T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHHHHHHHhcCC--c--ceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHH
Confidence 333444444556666666655666666533 2 3499999999999999999832 223678889999988876654
Q ss_pred ---CCC--eEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEE
Q 007645 245 ---GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 245 ---g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lv 299 (595)
++. +....+|...+.- .+.||-|++.. +.....+|..+.+++|+||.+-
T Consensus 146 ~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 146 RLNKVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp HHTT-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred HHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 443 5677888877754 78999998764 2233468889999999999863
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.011 Score=58.01 Aligned_cols=92 Identities=25% Similarity=0.261 Sum_probs=64.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCC-eEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
+++|||+|.|.=+.-|+=.. +...++-+|....-+.+.+ +-++. +.+....++. +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~--- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA--- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS---
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc---
Confidence 79999999995444443321 2236777898887665543 34665 7777777777 5566899999987644
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
....++.-+.+.|++||.+++.
T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SHHHHHHHHGGGEEEEEEEEEE
T ss_pred --CHHHHHHHHHHhcCCCCEEEEE
Confidence 5667888999999999999885
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0021 Score=63.15 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=79.8
Q ss_pred cccChhhhhh--hhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHH
Q 007645 408 MKNGYDVFEA--DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVI 481 (595)
Q Consensus 408 ~~~~~~~f~~--d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i 481 (595)
+|+..+.|.. +...++..+..-. +. .++-..=-.|+|+|||.|.|+..+.. .. -+|+-.|.. ..+..+
T Consensus 8 ~~~~d~~~~~~~~~~~t~~~~r~~~--l~-~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~---~~v~avD~~~~~~~~a 81 (198)
T PRK00377 8 PGIPDEEFERDEEIPMTKEEIRALA--LS-KLRLRKGDMILDIGCGTGSVTVEASLLVGET---GKVYAVDKDEKAINLT 81 (198)
T ss_pred CCCChHHHccCCCCCCCHHHHHHHH--HH-HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCC---CEEEEEECCHHHHHHH
Confidence 4667777876 3457777775421 11 12222224799999999999876532 11 123333332 333322
Q ss_pred hh----ccchhhh----cccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChH
Q 007645 482 YD----RGLIGVY----HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPE 552 (595)
Q Consensus 482 ~e----RGlig~~----~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~ 552 (595)
-+ -|+..-. .|..+..+..+..||+|...+ ....+..+|-++-|+|+|||.+++. -..+
T Consensus 82 ~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 149 (198)
T PRK00377 82 RRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG------------GSEKLKEIISASWEIIKKGGRIVIDAILLE 149 (198)
T ss_pred HHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC------------CcccHHHHHHHHHHHcCCCcEEEEEeecHH
Confidence 21 1321111 122222223335688876422 1235667899999999999999983 2345
Q ss_pred HHHHHHHhHhccCceeEE
Q 007645 553 VIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 553 ~~~~~~~~~~~~~W~~~~ 570 (595)
.+.++...++...++..+
T Consensus 150 ~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 150 TVNNALSALENIGFNLEI 167 (198)
T ss_pred HHHHHHHHHHHcCCCeEE
Confidence 566777767666655443
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00031 Score=71.35 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----ch--hhhcc
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LI--GVYHD 492 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----li--g~~~~ 492 (595)
..|++.+..... ...+ ..|||++||+|-.+..|...---.-.|+-.|-. +-|.++-+|- .. =....
T Consensus 33 ~~wr~~~~~~~~-----~~~g--~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 33 RRWRRKLIKLLG-----LRPG--DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG 105 (233)
T ss_dssp ----SHHHHHHT-------S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-
T ss_pred HHHHHHHHhccC-----CCCC--CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc
Confidence 788887765332 2233 389999999999988886531111245555544 7777776653 21 11111
Q ss_pred cCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 493 WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 493 wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
=.|.++ || .+||.|=++..+-.. .+....|-||=|+|||||.++|=|
T Consensus 106 da~~lp-~~d~sfD~v~~~fglrn~---------~d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 106 DAEDLP-FPDNSFDAVTCSFGLRNF---------PDRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp BTTB---S-TT-EEEEEEES-GGG----------SSHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHhc-CCCCceeEEEHHhhHHhh---------CCHHHHHHHHHHHcCCCeEEEEee
Confidence 123444 45 899999877766643 567889999999999999998853
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00062 Score=70.33 Aligned_cols=135 Identities=14% Similarity=0.130 Sum_probs=83.2
Q ss_pred cChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhH----HHhhhcCC----CeEEEEeccCCCC-CchhH
Q 007645 410 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGG----FAAALTSD----PVWVMNVVPARKS-STLSV 480 (595)
Q Consensus 410 ~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~----faa~l~~~----~vwvmnv~p~~~~-~~l~~ 480 (595)
++...|-.|...|..-.+.....|......+.--.|+|+|||.|- .|..|.+. +-|...|+-+|-. .-|..
T Consensus 68 i~~T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~ 147 (264)
T smart00138 68 TNETRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK 147 (264)
T ss_pred cCCCcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence 455678888899988776655433222222333579999999994 55555331 1244566666654 44543
Q ss_pred Hhh--------ccchh--------------------------hhcccCCCCCCCC-CccchhhccCccccccCCCCCCCC
Q 007645 481 IYD--------RGLIG--------------------------VYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNS 525 (595)
Q Consensus 481 i~e--------RGlig--------------------------~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~ 525 (595)
+-+ |++.. ..||-.+. .+| ..||+|.|..+|..+. .
T Consensus 148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~-------~ 218 (264)
T smart00138 148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFD-------E 218 (264)
T ss_pred HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCC-------H
Confidence 322 11110 12333332 133 7999999998887652 2
Q ss_pred CChhhhHHhhcccccCCcEEEEeCChHH
Q 007645 526 CSLVDLMVEMDRMLRPEGTVVVRDSPEV 553 (595)
Q Consensus 526 c~~~~~llEmdRiLRP~G~~i~rd~~~~ 553 (595)
=....++-++-|+|+|||++++-....+
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~lg~~E~~ 246 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFLGHSESL 246 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence 2344699999999999999999876543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0009 Score=67.42 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=73.3
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHh----hccchhhhccc-CCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY----DRGLIGVYHDW-CEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig~~~~w-ce~f~typ-rtyDl~H~~~~~s 514 (595)
.+|+|+|||.|.|+.++... |- .+|+-.|-. ..+..+- ..|+-. .+-. +..+..++ ..||+|-++--|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPD--ARVTAVDISPEALAVARKNAARLGLDN-VTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECchhccCcCCceeEEEECCCCC
Confidence 47999999999999998764 21 134444432 3333222 234321 1111 12223344 7899999876655
Q ss_pred cccCCCCCCCCCC-----------------hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEE
Q 007645 515 LIKNPGSNKNSCS-----------------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 515 ~~~~~~~~~~~c~-----------------~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~ 570 (595)
...++........ ...++-++-|+|+|||.+++.......++++++++...++...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVE 238 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceE
Confidence 4321110000000 1356778999999999999986666667788888777775433
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0046 Score=69.88 Aligned_cols=75 Identities=20% Similarity=0.136 Sum_probs=49.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCC-------ceEEEEeecCcHHHHHHHHHc----C-CCeEEEEccccc--C---CCCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENI-------LTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRR--L---PFPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv-------~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~--L---Pfpd~ 263 (595)
..+|||.|||+|.|...++.+.. ...++.+.|+++..+..++.+ + ....+...+... + .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 45899999999999998876521 236789999999999988765 1 222333222111 1 11125
Q ss_pred ceeEEEEcCCCc
Q 007645 264 SFDIVHCSRCLI 275 (595)
Q Consensus 264 sFDlV~~s~vL~ 275 (595)
.||+|+++--..
T Consensus 112 ~fD~IIgNPPy~ 123 (524)
T TIGR02987 112 LFDIVITNPPYG 123 (524)
T ss_pred cccEEEeCCCcc
Confidence 799999976543
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0058 Score=64.94 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHcCC-----CeEE--EEcccc
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERGI-----PAFV--AMLGTR 256 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~erg~-----~~~~--~~~d~~ 256 (595)
...|++.++ ...+++|+|||.|.=+..|++. ......+.|+|+|.++++.+.++-. .+.+ +.++..
T Consensus 67 ~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~ 142 (319)
T TIGR03439 67 SSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYD 142 (319)
T ss_pred HHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHH
Confidence 345555543 2337999999999776666554 1123578999999999998876522 2333 334322
Q ss_pred c----CCC--CCCceeEEEEc-CCCccccc-CHHHHHHHHHh-hcCCCcEEEEEc
Q 007645 257 R----LPF--PAFSFDIVHCS-RCLIPFTA-YNATYLIEVDR-LLRPGGYLVISG 302 (595)
Q Consensus 257 ~----LPf--pd~sFDlV~~s-~vL~h~~~-d~~~~L~Ei~R-vLRPGG~lvls~ 302 (595)
+ ++- ......+++.- ..+.++.. ....+|+++.+ .|+|||.|++..
T Consensus 143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 321 12335666654 35655542 22488999999 999999999864
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0049 Score=67.15 Aligned_cols=105 Identities=17% Similarity=0.119 Sum_probs=76.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccccC----CCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRL----PFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~L----Pfpd~sFDlV~ 269 (595)
+++|||+=|=||.|+.+.+..|.. +++.+|.|...++.|+++ |+. ..++++|+... --...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 349999999999999999988752 677789999999999887 442 56788775332 22234899999
Q ss_pred EcC---CC-----cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 270 CSR---CL-----IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 270 ~s~---vL-----~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
.-- +- .....+...++..+.++|+|||.+++++.....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 721 10 011123457889999999999999999864433
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00038 Score=70.34 Aligned_cols=99 Identities=11% Similarity=0.191 Sum_probs=59.0
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
..|||+|||.|.++..|.+. |- .+|+-.|-. +-|..+-++ +...-++--+..+..+| ..+|+|.+...+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l 132 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 132 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence 57999999999999887652 31 133334432 444433322 21100111122223333 468988877766
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.++. .-....+|-||-|+|+|||.+++.|.
T Consensus 133 ~~~~-------~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 133 QFLP-------PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhCC-------HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 5432 11245789999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0041 Score=68.59 Aligned_cols=99 Identities=23% Similarity=0.303 Sum_probs=82.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC----CeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI----PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~----~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
++|-+|||.-.+...+-+.|.. +++-+|+|.-.++....++. ...+..++...+.|++++||+|+--..+.++.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999999998888765 67778999999998887753 25677888999999999999999988887766
Q ss_pred cCHH---------HHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNA---------TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~---------~~L~Ei~RvLRPGG~lvls~p 303 (595)
++.. ..+.|+.|+|+|||+++..+-
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 4332 457999999999999876553
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0018 Score=66.15 Aligned_cols=110 Identities=16% Similarity=0.171 Sum_probs=66.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.+|||+|||.|..+.++.....- .|+-.|-. ..+..+-++ |+-...+-. ... .+||+|.|+-...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~~~~~~~---~~~--~~fD~Vvani~~~--- 190 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVELNVYLP---QGD--LKADVIVANILAN--- 190 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCCceEEEc---cCC--CCcCEEEEcCcHH---
Confidence 57999999999888777554221 13333332 444443333 221111100 010 1699998753322
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~ 571 (595)
.+..++-++-|+|+|||++|+++-. +..+.+.+.+...-++....
T Consensus 191 ---------~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 191 ---------PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---------HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 1345778999999999999998533 34566777777777876654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.021 Score=62.06 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=61.0
Q ss_pred cHHHH-HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCc---HHHHHHHHHcCCCeE-EEEcccc
Q 007645 182 GADKY-IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSH---KAQIQFALERGIPAF-VAMLGTR 256 (595)
Q Consensus 182 ~a~~y-i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s---~~~l~~A~erg~~~~-~~~~d~~ 256 (595)
.+++| ++.+.+.... + .||=++=..|.++..|+..++. .+ .|.- .+..+.+..++++.. +...+..
T Consensus 30 aade~ll~~~~~~~~~--~---~~~i~nd~fGal~~~l~~~~~~--~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~~ 100 (378)
T PRK15001 30 AADEYLLQQLDDTEIR--G---PVLILNDAFGALSCALAEHKPY--SI--GDSYISELATRENLRLNGIDESSVKFLDST 100 (378)
T ss_pred cHHHHHHHHHhhcccC--C---CEEEEcCchhHHHHHHHhCCCC--ee--ehHHHHHHHHHHHHHHcCCCcccceeeccc
Confidence 46666 4555443211 1 6899999999999999976553 22 2422 122233344465533 2222221
Q ss_pred cCCCCCCceeEEEEcCCCcccccC---HHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~~d---~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
-+++ +.+|+|+. .++.. ....|..+.++|.||+.++..+
T Consensus 101 -~~~~-~~~d~vl~-----~~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378)
T PRK15001 101 -ADYP-QQPGVVLI-----KVPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378)
T ss_pred -cccc-CCCCEEEE-----EeCCCHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 1233 45898874 34432 3467888889999999977544
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00015 Score=68.42 Aligned_cols=61 Identities=26% Similarity=0.336 Sum_probs=49.6
Q ss_pred CeEEEEcccccCCCCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 247 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 247 ~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
.+.+++-.....+|.++|.|+|.|.++++|+.- ....++++.+|+|||||++-++.|...+
T Consensus 30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 344444445667899999999999999999983 3348999999999999999999995543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0051 Score=66.22 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
..+++.+.+.+.... .+|||++||+|.++..|++.. ..++++|.++.+++.|+++ ++ ++.+...|+.++
T Consensus 184 ~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 184 IKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH
Confidence 334555555543222 259999999999999888763 2789999999999999876 44 467777776442
Q ss_pred -C-------C---C-----CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 -P-------F---P-----AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 -P-------f---p-----d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ + . ...||+|+.----.. -...++..+. +|++.++++-.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G---~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG---LDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCCCC---CcHHHHHHHH---cCCcEEEEEcC
Confidence 1 1 0 123799887543211 1234445444 48899988864
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00069 Score=66.76 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=78.2
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhhc--cchhhhcccC-CCCCC-CC-Cccchhh
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR--GLIGVYHDWC-EPFST-YP-RTYDLIH 508 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~eR--Glig~~~~wc-e~f~t-yp-rtyDl~H 508 (595)
.+...+|+++++.|||-|-|.+.|... .+.++-++|. -|..+-+| |+..+ .|- -.++. .| .+|||||
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V--~~~~~dvp~~~P~~~FDLIV 111 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHV--EWIQADVPEFWPEGRFDLIV 111 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSE--EEEES-TTT---SS-EEEEE
T ss_pred hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCe--EEEECcCCCCCCCCCeeEEE
Confidence 378999999999999999999999654 4666655443 23333222 11110 111 11111 34 8999999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe---CCh-------HHHHHHHHhHhccCceeEEeccCCCCC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSP-------EVIDKVSRIANTVRWTAAVHDKEPGSN 578 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r---d~~-------~~~~~~~~~~~~~~W~~~~~~~~~~~~ 578 (595)
.+-++=.+. +.-.+..++-.|...|+|||.+|+- |.. .=-+.|..++..+-=++.-..-..++
T Consensus 112 ~SEVlYYL~------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~- 184 (201)
T PF05401_consen 112 LSEVLYYLD------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGS- 184 (201)
T ss_dssp EES-GGGSS------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SS-
T ss_pred EehHhHcCC------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCC-
Confidence 998887553 3345667888899999999999984 322 11345555555554444433222223
Q ss_pred CCceEEEE
Q 007645 579 GREKILVA 586 (595)
Q Consensus 579 ~~~~~l~~ 586 (595)
..|.-|++
T Consensus 185 ~~~~~~~~ 192 (201)
T PF05401_consen 185 PNEDCLLA 192 (201)
T ss_dssp TTSEEEEE
T ss_pred CCCceEee
Confidence 34555554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0029 Score=66.24 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=60.8
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhc-cchhhhcccCCCCCCCC---Cccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYP---RTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~wce~f~typ---rtyDl~ 507 (595)
|..+ -+|||+|||.|+|...|.+. .|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. .|+ -++|+|
T Consensus 130 IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~-~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ-KYRMLVPMVDVI 206 (293)
T ss_pred cCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh-hhhcccCCCCEE
Confidence 4555 47999999999998888543 3666654433222345555444 5666666755432 122 467777
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
=++-. ..=....+++|+.|+|+|||+|+|.
T Consensus 207 ~~Dva-----------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 207 FADVA-----------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEeCC-----------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 43321 1112234678999999999999994
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.019 Score=56.38 Aligned_cols=132 Identities=19% Similarity=0.193 Sum_probs=86.1
Q ss_pred CCeeecCCCCCcccccHHHHHHHHHhhccc--cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 167 GPYFTFPGGGTMFADGADKYIDKLKQYIPI--TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 167 ~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~--~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
+.....|.+.+ ..+..+...+.+.+++.. ..|. ++||+=+|+|.++.+.+++|.. .++-+|.+...++..+++
T Consensus 11 gr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~--~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N 85 (187)
T COG0742 11 GRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGA--RVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKEN 85 (187)
T ss_pred CCcccCCCCCC-cCCCchHHHHHHHHhccccccCCC--EEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHH
Confidence 44455555422 234456667778888765 3444 8999999999999999999865 556678888888888776
Q ss_pred ----C--CCeEEEEcccccC-CCCCC--ceeEEEEcCCCcccccCHHHHHHH--HHhhcCCCcEEEEEcC
Q 007645 245 ----G--IPAFVAMLGTRRL-PFPAF--SFDIVHCSRCLIPFTAYNATYLIE--VDRLLRPGGYLVISGP 303 (595)
Q Consensus 245 ----g--~~~~~~~~d~~~L-Pfpd~--sFDlV~~s~vL~h~~~d~~~~L~E--i~RvLRPGG~lvls~p 303 (595)
+ ....+...|+... +.... .||+|+.---+..-.-+....+.. -...|+|+|.+++-..
T Consensus 86 ~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 86 LKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 3 3456666665432 22222 499999876553111111223333 5577999999999764
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0021 Score=63.12 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=58.2
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc----hhh-hcccCCCCCCCCCccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL----IGV-YHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl----ig~-~~~wce~f~typrtyDl~H~~~~~s 514 (595)
=.+|+|+|||.|.++.++... +. .-+++-.|.. ..+..+-++.- +-. .+|-.+ .+.-+.+||+|++...+.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 368999999999999888543 11 0122222322 34444444321 111 111111 111126899999876665
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.. .....+|-++-++|+|||++++.+
T Consensus 118 ~~---------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV---------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc---------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 456789999999999999999854
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00065 Score=69.22 Aligned_cols=98 Identities=8% Similarity=0.124 Sum_probs=59.7
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
..|||+|||.|..+.+|.. .|-+ .|+-.|-. .-|..+-+| |+..-..--|..+...| ..||+|-++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 4699999999999887754 3322 23444432 444444333 22111111223333444 458987776665
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+.. .-....++-||-|+|+|||.+++.|
T Consensus 136 ~~l~-------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLE-------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5432 2234679999999999999999986
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=59.61 Aligned_cols=112 Identities=15% Similarity=0.142 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d 254 (595)
....++++.+.+.+. ++ +.||||.=||..+..++.+-.....+..+|++++..+.+.+- |.. +.+.++.
T Consensus 59 ~d~g~fl~~li~~~~---ak--~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLN---AK--RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred hHHHHHHHHHHHHhC---Cc--eEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 334455655555543 23 899999999977777776644456788889999888777543 432 4455544
Q ss_pred c-ccC-----CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 255 T-RRL-----PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 255 ~-~~L-----Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+ +.| ..+.++||+|+. .||..+-..+..++.++||+||.+++-
T Consensus 134 a~esLd~l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEe
Confidence 2 222 135789999985 466655568899999999999999884
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0017 Score=64.45 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=70.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-
Q 007645 413 DVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL- 486 (595)
Q Consensus 413 ~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl- 486 (595)
..|....+.=..+++.....+...-....-.+|||+|||.|.++..|.+... .++=.|-. ..+..+-++ |+
T Consensus 17 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~~ 93 (224)
T TIGR01983 17 GKFKPLHKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPLL 93 (224)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3455554544455555555443110011234899999999999988865432 12223322 233333221 22
Q ss_pred -----hhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 487 -----IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 487 -----ig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+-..++. ...|.+||+|.+..++.+. -+...+|-++.++|+|||.+++.+
T Consensus 94 ~~~~~~~d~~~~~---~~~~~~~D~i~~~~~l~~~---------~~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 94 KIEYRCTSVEDLA---EKGAKSFDVVTCMEVLEHV---------PDPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred ceEEEeCCHHHhh---cCCCCCccEEEehhHHHhC---------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 12222221 1125789999988877643 356789999999999999999874
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.006 Score=65.89 Aligned_cols=107 Identities=14% Similarity=0.151 Sum_probs=69.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC-
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL- 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L- 258 (595)
.+++.+.+.+... ..++||++||+|.++..|++. . ..+.++|.++.+++.|+++ ++ ++.+...|+.+.
T Consensus 194 ~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~-~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 194 KMLEWALDATKGS---KGDLLELYCGNGNFTLALARN-F--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhh-C--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHH
Confidence 3444444444322 136999999999999988875 2 2788999999999998875 44 467787776442
Q ss_pred C-CC--------------CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 P-FP--------------AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 P-fp--------------d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ +. ...||+|+.---... -...++..+. +|++.++++-.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G---~~~~~l~~l~---~~~~ivyvSC~ 321 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG---LDDETLKLVQ---AYERILYISCN 321 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCCCCC---CcHHHHHHHH---ccCCEEEEEeC
Confidence 1 10 125899997643211 1234444444 47888888864
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0077 Score=62.04 Aligned_cols=83 Identities=18% Similarity=0.211 Sum_probs=66.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfp 261 (595)
..++.|.+.+....+ .+|||||+|.|.++..|++++. .++++++++.+++.-+++. .+..++.+|+-...++
T Consensus 17 ~v~~kIv~~a~~~~~--d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 17 NVIDKIVEAANISPG--DNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHhcCCCCC--CeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 457777777776654 4999999999999999999855 4677789999998888773 4578888898888877
Q ss_pred CC-ceeEEEEcC
Q 007645 262 AF-SFDIVHCSR 272 (595)
Q Consensus 262 d~-sFDlV~~s~ 272 (595)
+. .++.|+++-
T Consensus 92 ~l~~~~~vVaNl 103 (259)
T COG0030 92 SLAQPYKVVANL 103 (259)
T ss_pred hhcCCCEEEEcC
Confidence 54 688898874
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00074 Score=58.34 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=45.8
Q ss_pred EecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh--hhc-ccCCCCCCCC-CccchhhccCccccc
Q 007645 446 MDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYH-DWCEPFSTYP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 446 mDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~-~wce~f~typ-rtyDl~H~~~~~s~~ 516 (595)
||+|||.|.+...|...- -...++=.|-. +-|..+-+| +.-. ... +--+.+...+ .+||+|.+..++.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999997662 22333333322 444222222 2100 111 1112233344 599999999999865
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEE
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTV 545 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~ 545 (595)
=.+..+|-.+-++|+|||.+
T Consensus 80 ---------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ---------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---------S-HHHHHHHHTTT-TSS-EE
T ss_pred ---------hhHHHHHHHHHHHcCCCCCC
Confidence 36778999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0014 Score=65.73 Aligned_cols=95 Identities=15% Similarity=0.201 Sum_probs=62.1
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhc--ccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYH--DWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~--~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|||+|||.|.++..|.+.. .+|+=.|.. +.+..+-++ |+-..++ ++.+.....+-+||+|.+..++..
T Consensus 50 ~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 50 KRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 459999999999998887653 344444443 444444433 3211121 221111112368999999888775
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. -+...+|-++.|+|+|||.+++.+
T Consensus 127 ~---------~~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 127 V---------PDPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred c---------CCHHHHHHHHHHHcCCCcEEEEEe
Confidence 4 245678999999999999999974
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=63.90 Aligned_cols=97 Identities=8% Similarity=0.015 Sum_probs=72.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC-CCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP-fpd~sFDlV~~s~vL~ 275 (595)
-+|||+.||+|..+..++.+...+-.++.+|+++.+++.++++ +. ++.+...|+..+- .....||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 3799999999999999998721124788899999999988765 33 3566666655432 1235799998753 2
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+..++..+.+.+++||.+.++..
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEec
Confidence 2446799999999999999999843
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=60.97 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--CCC----eEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--GIP----AFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--g~~----~~~~~~d~~~L 258 (595)
..+++|.+..+.+.+. .||+||.|||.++..|++++- .+.++++++.|+....+| |.+ ..+..+|.-..
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 3467777777777655 999999999999999999865 456668889998888777 333 34555565444
Q ss_pred CCCCCceeEEEEcC
Q 007645 259 PFPAFSFDIVHCSR 272 (595)
Q Consensus 259 Pfpd~sFDlV~~s~ 272 (595)
++ -.||.++++-
T Consensus 120 d~--P~fd~cVsNl 131 (315)
T KOG0820|consen 120 DL--PRFDGCVSNL 131 (315)
T ss_pred CC--cccceeeccC
Confidence 43 3699999864
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=57.13 Aligned_cols=142 Identities=20% Similarity=0.236 Sum_probs=95.5
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEE-cccccCC
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAM-LGTRRLP 259 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~-~d~~~LP 259 (595)
+++..+...+.+.--... .+++||+|+-||.|+..++++|.. .+.++|...+|+..-.+....+.... .++..+.
T Consensus 62 RG~~KL~~ale~F~l~~k--~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~ 137 (245)
T COG1189 62 RGGLKLEKALEEFELDVK--GKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLT 137 (245)
T ss_pred cHHHHHHHHHHhcCcCCC--CCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhcCCcEEEEecCChhhCC
Confidence 345555554444322233 459999999999999999999764 77889999999988887776654433 2333332
Q ss_pred ---CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----------Cch-----hHHHHHHHH
Q 007645 260 ---FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------QDK-----EWADLQAVA 321 (595)
Q Consensus 260 ---fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----------~~~-----~w~~l~~la 321 (595)
+. +..|+++|--+|+. ...+|-.+..+|+|+|.++...-|..--. ++. .-..+.+.+
T Consensus 138 ~~~~~-~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 138 PEDFT-EKPDLIVIDVSFIS----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred HHHcc-cCCCeEEEEeehhh----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHH
Confidence 22 36789999877744 46789999999999998887654321100 011 134477788
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
+..+|....-
T Consensus 213 ~~~g~~~~gl 222 (245)
T COG1189 213 KELGFQVKGL 222 (245)
T ss_pred hhcCcEEeee
Confidence 8888887754
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=63.80 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCC
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFS 498 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~ 498 (595)
..|++.+-...... +..+ .+|||+|||.|-++..|.+.- --+|+-.|-. +-|..+-+++ ...+.-.|.++
T Consensus 35 ~~wr~~~~~~l~~~---~~~~--~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp 105 (226)
T PRK05785 35 VRWRAELVKTILKY---CGRP--KKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--DKVVGSFEALP 105 (226)
T ss_pred HHHHHHHHHHHHHh---cCCC--CeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--ceEEechhhCC
Confidence 56776654433211 1222 589999999999998887652 1256666655 6666666653 11222334444
Q ss_pred CCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCc
Q 007645 499 TYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG 543 (595)
Q Consensus 499 typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G 543 (595)
|| .+||+|-++..+-++ -+.+..|-||-|+|||.+
T Consensus 106 -~~d~sfD~v~~~~~l~~~---------~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 106 -FRDKSFDVVMSSFALHAS---------DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CCCCCEEEEEecChhhcc---------CCHHHHHHHHHHHhcCce
Confidence 44 899999987766432 457889999999999954
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0073 Score=61.91 Aligned_cols=140 Identities=20% Similarity=0.298 Sum_probs=76.7
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc---cchh----hhcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR---GLIG----VYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR---Glig----~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|.. ..+..+-++ +... .-.|+-+++. +.+||+|-++--+
T Consensus 110 ~~vLDiG~GsG~~~~~la~~~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy 185 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKERPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPPY 185 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCCc
Confidence 47999999999999988653 11 234444433 444443332 2111 1123333332 3789999876444
Q ss_pred ccccC------------CCC--CCCCC---ChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCC
Q 007645 514 SLIKN------------PGS--NKNSC---SLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG 576 (595)
Q Consensus 514 s~~~~------------~~~--~~~~c---~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~ 576 (595)
..... |.. ..... .+..++-++-++|+|||++++--....-+.+++++...-+....... .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~--d 263 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRK--D 263 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEec--C
Confidence 32110 000 00000 12357778889999999999964444445677777665554222211 2
Q ss_pred CCCCceEEEEEe
Q 007645 577 SNGREKILVATK 588 (595)
Q Consensus 577 ~~~~~~~l~~~K 588 (595)
-.+.+++++++|
T Consensus 264 ~~~~~r~~~~~~ 275 (275)
T PRK09328 264 LAGRDRVVLGRR 275 (275)
T ss_pred CCCCceEEEEEC
Confidence 234678888765
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0015 Score=67.30 Aligned_cols=93 Identities=17% Similarity=0.192 Sum_probs=55.3
Q ss_pred eeEEecccchhHHHhhh---cCCCeEEEEeccCCCC-CchhHHhhc----cchhh---hcccCCCCCCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAAL---TSDPVWVMNVVPARKS-STLSVIYDR----GLIGV---YHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l---~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~---~~~wce~f~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|..+..+ ..... .|+-.|-. +.+..+-++ |+-.+ ..|. +.++ +| .+||+|+++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~---~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~-~~~~~fD~Vi~~ 153 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTG---KVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALP-VADNSVDVIISN 153 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCC-CCCCceeEEEEc
Confidence 49999999998754322 22221 22233332 445544443 22100 0111 1222 34 799999988
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++.+. -+...+|-|+=|+|||||.+++.|
T Consensus 154 ~v~~~~---------~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 154 CVINLS---------PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CcccCC---------CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 777543 234679999999999999999964
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0015 Score=66.46 Aligned_cols=111 Identities=25% Similarity=0.328 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccch-hh-----hcc
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GV-----YHD 492 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~-----~~~ 492 (595)
..|++.+-. .+. ++.| -+|||++||+|=+|..+.+.-= .-.|+-.|=. +-|.++-+|--= |. .+-
T Consensus 37 ~~Wr~~~i~---~~~--~~~g--~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 37 RLWRRALIS---LLG--IKPG--DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred HHHHHHHHH---hhC--CCCC--CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 667765533 122 2223 6899999999999999965321 3455555544 777777777541 11 122
Q ss_pred cCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 493 WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 493 wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
==|.++ || .|||++=++..+-.. =+++..|=||-|+|+|||-+++=
T Consensus 109 dAe~LP-f~D~sFD~vt~~fglrnv---------~d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 109 DAENLP-FPDNSFDAVTISFGLRNV---------TDIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred chhhCC-CCCCccCEEEeeehhhcC---------CCHHHHHHHHHHhhcCCeEEEEE
Confidence 224455 66 999999877766643 36788999999999999987774
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0059 Score=64.20 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=45.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG 245 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg 245 (595)
.++.+.+.+...++. ++||.+||.|.++..+++.......+.++|.++.+++.|+++-
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L 64 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRL 64 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhh
Confidence 445566666555544 8999999999999999988433457999999999999998763
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=59.56 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=89.0
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPf 260 (595)
+..|..++...+|+ +||+-|.|+|+++.+++..-.....+.-.|+++...+.|++. + -++.+..-|.....|
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 45667778888877 999999999999999998743445677789999888888764 3 356777777666554
Q ss_pred C--CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCc-EEEEEcCCCCCCCCchhHHHHH---HHHHHcCcEEEEe
Q 007645 261 P--AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG-YLVISGPPVQWPKQDKEWADLQ---AVARALCYELIAV 331 (595)
Q Consensus 261 p--d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG-~lvls~p~~~~~~~~~~w~~l~---~la~~~~w~~v~~ 331 (595)
. +..+|.|+.- ++ .+-.++--++.+||-+| +|+-..| ..++++ +++.+++|.-+..
T Consensus 172 ~~ks~~aDaVFLD-----lP-aPw~AiPha~~~lk~~g~r~csFSP---------CIEQvqrtce~l~~~gf~~i~~ 233 (314)
T KOG2915|consen 172 LIKSLKADAVFLD-----LP-APWEAIPHAAKILKDEGGRLCSFSP---------CIEQVQRTCEALRSLGFIEIET 233 (314)
T ss_pred cccccccceEEEc-----CC-ChhhhhhhhHHHhhhcCceEEeccH---------HHHHHHHHHHHHHhCCCceEEE
Confidence 3 6789999853 33 34456666777888766 6665544 233333 4566778866644
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.006 Score=57.38 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd 262 (595)
+..|-+.+....|+ .++|+|||.|-+.....-. ..-.+.|+|+.+.+++.+..+ .+.+.+.+++...+-+..
T Consensus 37 ~~~Ih~TygdiEgk--kl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~ 112 (185)
T KOG3420|consen 37 LYTIHNTYGDIEGK--KLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKG 112 (185)
T ss_pred HHHHHhhhccccCc--chhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccC
Confidence 33444444433333 8999999999776333322 234678999999999998766 345677888888777777
Q ss_pred CceeEEEEcCCCc
Q 007645 263 FSFDIVHCSRCLI 275 (595)
Q Consensus 263 ~sFDlV~~s~vL~ 275 (595)
+.||.++.+.-|.
T Consensus 113 g~fDtaviNppFG 125 (185)
T KOG3420|consen 113 GIFDTAVINPPFG 125 (185)
T ss_pred CeEeeEEecCCCC
Confidence 8999999987663
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.014 Score=61.63 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=60.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
.+.|||+|||+|.++...+..|.. .+.+++.| +|.+.|++. .+ .+.++.+.+++..+| +..|+|++--+-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccch
Confidence 448999999999888877777653 45555544 466666653 22 234444556666665 678999985433
Q ss_pred cccc-cCHHHHHHHHHhhcCCCcEEEEE
Q 007645 275 IPFT-AYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 275 ~h~~-~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
.-+. +..-.....+.|.|+|.|.++=+
T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222 11112233456999999998644
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.026 Score=60.25 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=62.9
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA 279 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~ 279 (595)
...++||+||++|.|+..|+++|. .|+++|..+ +.........+.+...+..+..-+.+.+|.++|--+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~--l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP--MAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh--cCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 345999999999999999999975 677778543 222233344566666665444323678999998654 3
Q ss_pred CHHHHHHHHHhhcCCC--cEEEEEc
Q 007645 280 YNATYLIEVDRLLRPG--GYLVISG 302 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPG--G~lvls~ 302 (595)
.+..++.-+.+-|..| ..+++..
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 5677777777777665 3455543
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0016 Score=65.89 Aligned_cols=114 Identities=18% Similarity=0.099 Sum_probs=79.7
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCC--------CCCCccchhhcc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFS--------TYPRTYDLIHVS 510 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~--------typrtyDl~H~~ 510 (595)
..=|.+.|+|||.| +||..+..= -=+|+-+|-. .+|++ ..-+..-+||+---+|+ .=+.+-|||-|.
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~--~k~VIatD~s~~mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEH--YKEVIATDVSEAMLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHh--hhhheeecCCHHHHHH-hhcCCCcccccCCccccccccccccCCCcceeeehhh
Confidence 44569999999999 766553211 2367777766 78884 44555556665544444 236899999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCc-EEE---EeCChHHHHHHHHhHhccCce
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEG-TVV---VRDSPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G-~~i---~rd~~~~~~~~~~~~~~~~W~ 567 (595)
.++- | |+++..+-|+-|+|||.| .+. ++|+.-++-++-++..+++|+
T Consensus 108 qa~H-W---------Fdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 108 QAVH-W---------FDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhHH-h---------hchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 8874 5 899999999999999999 222 355555566666666666664
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.02 Score=63.37 Aligned_cols=109 Identities=17% Similarity=0.279 Sum_probs=75.9
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf 260 (595)
+++...+.+....+. ++||+=||.|.|+..|+++ +..+.++++++++++.|+++ ++ ++.|..++++++..
T Consensus 281 l~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 281 LYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHhhcCCC--EEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 344455555554434 8999999999999999976 34788899999999988765 44 47788888776643
Q ss_pred C---CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 P---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 p---d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...||.|+..--... -...+++.+.+ ++|-..+++|-.
T Consensus 356 ~~~~~~~~d~VvvDPPR~G---~~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 356 AWWEGYKPDVVVVDPPRAG---ADREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred hccccCCCCEEEECCCCCC---CCHHHHHHHHh-cCCCcEEEEeCC
Confidence 2 357899986532211 11355555555 478888999875
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0036 Score=61.41 Aligned_cols=123 Identities=11% Similarity=0.140 Sum_probs=68.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchhhhcccCCCC--C--CCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPF--S--TYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~wce~f--~--typ-rtyDl~H~~~ 511 (595)
+.|||+|||.|.|+.+|... |- .||+-.|-. .-+..+ -..|+-.+-.-.+.+. . .+| .++|.|+.+.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 57999999999999888653 21 133333332 222222 2333321111112221 1 145 4889887542
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhc-cCcee
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANT-VRWTA 568 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~-~~W~~ 568 (595)
. .+|........|...+.+|-|+-|+|+|||.+++. |.....+.+.+.+.. -+|+.
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~ 153 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFEN 153 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEe
Confidence 2 22321111235677788999999999999999986 666556655554433 33554
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.007 Score=61.24 Aligned_cols=94 Identities=14% Similarity=0.202 Sum_probs=50.7
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchh----HHhhc-cchhhhcccCCCCC--CCCCccc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLS----VIYDR-GLIGVYHDWCEPFS--TYPRTYD 505 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~----~i~eR-Glig~~~~wce~f~--typrtyD 505 (595)
+..+ -.|||+|||.|++...|.+. .|+.+-+-| .-|. .+-+| ++.-+..|-.++.. ..+.+||
T Consensus 70 i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKG--SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCC--CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCC
Confidence 4455 36999999999999998653 244442222 2222 22222 22233334333211 1234577
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.|= +... ..=....+|-|+-|+|||||.++|
T Consensus 144 ~i~-----~d~~------~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIY-----QDVA------QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEE-----ECCC------ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 752 1110 000112346799999999999999
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=60.95 Aligned_cols=163 Identities=17% Similarity=0.147 Sum_probs=99.0
Q ss_pred cCCeeecCCCCCcccccHH-HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 166 SGPYFTFPGGGTMFADGAD-KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~-~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
.+++--+..|+-+|...-+ .|.+.+.--.......-++||-+|.|.|.-+++|++. .....++-+|.++.|++.++..
T Consensus 254 g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~ 332 (508)
T COG4262 254 GDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHA 332 (508)
T ss_pred cCceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhh
Confidence 3445556667777755433 3444432211121233568999999999999999987 2356889999999999999733
Q ss_pred ------------CCCeEEEEcccccC-CCCCCceeEEEEcCCCcccccC-----HHHHHHHHHhhcCCCcEEEEEcCCCC
Q 007645 245 ------------GIPAFVAMLGTRRL-PFPAFSFDIVHCSRCLIPFTAY-----NATYLIEVDRLLRPGGYLVISGPPVQ 306 (595)
Q Consensus 245 ------------g~~~~~~~~d~~~L-Pfpd~sFDlV~~s~vL~h~~~d-----~~~~L~Ei~RvLRPGG~lvls~p~~~ 306 (595)
.+.+.++..|+.+. .-..+.||.|+.-.-= +-... -..+..-+.|.|+++|.+++.....+
T Consensus 333 ~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~D-P~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 333 TVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPD-PSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred hHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCC-CCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 12345555554332 2334589999863210 10001 12567778899999999999765443
Q ss_pred CCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 307 WPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 307 ~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
+. ++.-|. +....++.++...-..
T Consensus 412 ~t-p~vfw~-i~aTik~AG~~~~Pyh 435 (508)
T COG4262 412 FT-PRVFWR-IDATIKSAGYRVWPYH 435 (508)
T ss_pred cC-Cceeee-ehhHHHhCcceeeeeE
Confidence 33 222243 4555666676655443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.011 Score=59.12 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=61.8
Q ss_pred ccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc-----------CC
Q 007645 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER-----------GI 246 (595)
Q Consensus 179 F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er-----------g~ 246 (595)
++.-....+..+.+.+....++ +.+|+|||.|......+-. ++. ...|+++.+...+.|.+. |.
T Consensus 23 YGEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~--~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCK--KSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--S--EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred eeecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCc--EEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455566677777665544 9999999999776655433 332 367778887766655421 22
Q ss_pred ---CeEEEEcccccCCCCC---CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEE
Q 007645 247 ---PAFVAMLGTRRLPFPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 247 ---~~~~~~~d~~~LPfpd---~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
++.+..+|..+.++.+ ..-|+|+++... +.++....|.++..-||+|-+++-
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 2344454433222110 246999998654 223445667888888998877664
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0038 Score=51.85 Aligned_cols=95 Identities=24% Similarity=0.290 Sum_probs=57.0
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh---hccc---hhhhc-ccCCCCCCCCCccchhhccCcccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DRGL---IGVYH-DWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~---eRGl---ig~~~-~wce~f~typrtyDl~H~~~~~s~ 515 (595)
+|+|+|||.|+++..+...+. .++.-.|-. +.+..+- +.+. +-.++ |+.+.-..-+.+||++.++..+..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 489999999999998877332 233333332 2222222 1111 11111 111111112478999999888874
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+ .=....++-.+.+.|||+|.+++.
T Consensus 79 ~--------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 L--------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred h--------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2 124567888899999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0079 Score=60.44 Aligned_cols=103 Identities=12% Similarity=0.163 Sum_probs=64.7
Q ss_pred CCCCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhhccc-hh--hhcccCCCCCCCCCccchhhcc
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDRGL-IG--VYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~eRGl-ig--~~~~wce~f~typrtyDl~H~~ 510 (595)
...+-..|+|+|||.|.++..|.. +.-...+|+-.|-. +.+..+.++.- .+ ...--++.++.-+.+||+|-++
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 334456899999999999877753 11112356666655 66766665521 11 1111123444435899999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+|.+.. +. .+..+|-||-|++| |.+++.|
T Consensus 137 ~~lhh~~------d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 137 HFLHHLD------DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CeeecCC------hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 8887653 11 24568999999999 5666654
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.025 Score=66.41 Aligned_cols=118 Identities=14% Similarity=0.006 Sum_probs=74.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc------CC-----------------------------------
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE------NI----------------------------------- 223 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~------gv----------------------------------- 223 (595)
.+...+........ ....++|-+||+|++..+.+.. |.
T Consensus 176 tlAaa~l~~a~w~~-~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~ 254 (702)
T PRK11783 176 NLAAAILLRSGWPQ-EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAE 254 (702)
T ss_pred HHHHHHHHHcCCCC-CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 34444444433311 2348999999999998776542 00
Q ss_pred ceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCCCC--CCceeEEEEcCCCccccc---CHHHHHHHHHhh-
Q 007645 224 LTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFP--AFSFDIVHCSRCLIPFTA---YNATYLIEVDRL- 291 (595)
Q Consensus 224 ~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPfp--d~sFDlV~~s~vL~h~~~---d~~~~L~Ei~Rv- 291 (595)
....+.++|+++.+++.|+++ |+. +.+.+.|..+++.+ .++||+|+++--...-.. +...+..++.+.
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred cCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 113689999999999999877 553 57778888877654 357999999864432221 122333333333
Q ss_pred --cCCCcEEEEEcC
Q 007645 292 --LRPGGYLVISGP 303 (595)
Q Consensus 292 --LRPGG~lvls~p 303 (595)
..+|+.+++.++
T Consensus 335 k~~~~g~~~~llt~ 348 (702)
T PRK11783 335 KQQFGGWNAALFSS 348 (702)
T ss_pred HHhCCCCeEEEEeC
Confidence 448988887765
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.027 Score=60.82 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=81.5
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCc-eEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC--CC-CC
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENIL-TLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP--FP-AF 263 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP--fp-d~ 263 (595)
.+...+|. +|||+.++.|+=+.+|++..-. +..++++|.++.-++...++ |.. +.....|...++ .+ .+
T Consensus 151 ~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 151 VLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 44445554 9999999999888888877322 34568899999877766554 554 456666665554 22 23
Q ss_pred ceeEEEE------cCCCc-------cccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHH
Q 007645 264 SFDIVHC------SRCLI-------PFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVAR 322 (595)
Q Consensus 264 sFDlV~~------s~vL~-------h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~ 322 (595)
.||.|+. ..++. .+.. -...+|..+.++|||||.++.++-.....+++ ..++.+++
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE---~vV~~~L~ 305 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE---EVVERFLE 305 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH---HHHHHHHH
Confidence 5999996 22221 1110 12277999999999999999999755444433 33445554
Q ss_pred H
Q 007645 323 A 323 (595)
Q Consensus 323 ~ 323 (595)
+
T Consensus 306 ~ 306 (355)
T COG0144 306 R 306 (355)
T ss_pred h
Confidence 3
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.009 Score=59.57 Aligned_cols=132 Identities=16% Similarity=0.243 Sum_probs=66.2
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhccchhhhcccCC---------CCCCCCCccchhh
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCE---------PFSTYPRTYDLIH 508 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce---------~f~typrtyDl~H 508 (595)
.+|||+|||.|+|+..|.+. .|..+-+.|... + .|+.-+-.|..+ .+. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~---~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP---I-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC---C-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 47999999999998766442 244444433111 1 121111122221 122 26789988
Q ss_pred ccCccccccCCCCC--CCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCceeEEeccCCCCCCCc
Q 007645 509 VSGIESLIKNPGSN--KNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHDKEPGSNGRE 581 (595)
Q Consensus 509 ~~~~~s~~~~~~~~--~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 581 (595)
++......-++... ..-...+.+|-|+=|+|+|||.+++.. -.+++..+++.-..... ..+.-.-....|
T Consensus 123 S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~---~Kp~ssr~~s~e 199 (209)
T PRK11188 123 SDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKV---RKPDSSRARSRE 199 (209)
T ss_pred cCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEE---ECCccccccCce
Confidence 75432211000000 000113568999999999999999942 23344443332222222 223333344467
Q ss_pred eEEEEE
Q 007645 582 KILVAT 587 (595)
Q Consensus 582 ~~l~~~ 587 (595)
..+||.
T Consensus 200 ~~~~~~ 205 (209)
T PRK11188 200 VYIVAT 205 (209)
T ss_pred eEEEee
Confidence 777765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0041 Score=62.57 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=94.9
Q ss_pred CCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhh-hcccCCCCC--CCCCccchhhccCcc
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGV-YHDWCEPFS--TYPRTYDLIHVSGIE 513 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~-~~~wce~f~--typrtyDl~H~~~~~ 513 (595)
..+.+|.++|.|||+|=++-+|.+.- =-+.=+|-+ |-|-.+.|+|+--+ +|-=-..|. +=++-+|||-|..+|
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 45669999999999999999987620 012223334 88999999996322 221112255 467899999999999
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------------HHHHHHHHhHhccCceeEEec-----
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHD----- 572 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~~~W~~~~~~----- 572 (595)
+-. -.++.++.=.++.|.|||.|+++-+. .--..|..+..+---++..+.
T Consensus 199 ~Yl---------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR 269 (287)
T COG4976 199 PYL---------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIR 269 (287)
T ss_pred Hhh---------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccch
Confidence 843 67899999999999999999998211 012346666665555554431
Q ss_pred cCCCCCCCceEEEEEec
Q 007645 573 KEPGSNGREKILVATKS 589 (595)
Q Consensus 573 ~~~~~~~~~~~l~~~K~ 589 (595)
.+.+.-.+..++|++|+
T Consensus 270 ~d~g~pv~G~L~iark~ 286 (287)
T COG4976 270 RDAGEPVPGILVIARKK 286 (287)
T ss_pred hhcCCCCCCceEEEecC
Confidence 23344455677888875
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.011 Score=57.47 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=68.4
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhccchhhhcccCCCC------CCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPF------STYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f------~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|+++.++..+ .|+..=+.|.. . + .|+--+..|..+.. ..+| .+||+|=++
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~--~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P--I-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c--C-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 58999999999997766432 25544333321 0 0 12211222433321 0123 578887765
Q ss_pred Ccc--c-cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CC----hHHHHHHHHhHhccCceeEEe-ccCCCCCCCc
Q 007645 511 GIE--S-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DS----PEVIDKVSRIANTVRWTAAVH-DKEPGSNGRE 581 (595)
Q Consensus 511 ~~~--s-~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~----~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~ 581 (595)
... + .|. .......+.++.+|-++-|+|||||.+++- .. .++++++++ .+ |+..+. |.-......|
T Consensus 106 ~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~~ 180 (188)
T TIGR00438 106 AAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSAE 180 (188)
T ss_pred CCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccce
Confidence 431 1 010 000001123467899999999999999993 11 233433333 32 444443 3333344567
Q ss_pred eEEEEE
Q 007645 582 KILVAT 587 (595)
Q Consensus 582 ~~l~~~ 587 (595)
+.+||.
T Consensus 181 ~~~~~~ 186 (188)
T TIGR00438 181 VYIVAK 186 (188)
T ss_pred EEEEEe
Confidence 777774
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0042 Score=58.16 Aligned_cols=96 Identities=18% Similarity=0.300 Sum_probs=62.3
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhh----ccch--hhh-cccCCCCCC-CCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD----RGLI--GVY-HDWCEPFST-YPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~-~~wce~f~t-yprtyDl~H~~ 510 (595)
-+|||+|||.|-++-.|.+ ...=++.| |-. .-+..+-+ .|+- =.+ .|.-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gv---D~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGV---DISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEE---ESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEE---ECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999988873 12323333 333 44444433 3442 111 22222 221 44789999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
+.+.+. .....+|-+|=|.|+|+|.+++.+-.
T Consensus 81 ~~l~~~---------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF---------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT---------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc---------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888432 56678899999999999999998765
|
... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0092 Score=59.75 Aligned_cols=124 Identities=15% Similarity=0.164 Sum_probs=67.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccch--hhhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI--GVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|+|+|||.|.++..+..... -+|+-.|-. ..+..+-+ .|+- -+-.|+.+.+. ...||+|.++--|..
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVE--FRPFDVVVSNPPYVP 113 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhcc--CCCeeEEEECCCCCC
Confidence 4799999999999888866432 133333432 44443222 2331 11234444332 268999998754432
Q ss_pred ccCC------------CCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeEE
Q 007645 516 IKNP------------GSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 516 ~~~~------------~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~~ 570 (595)
-... ........+..++-++-|+|+|||.+++- .+.....++.+++++-.|++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 1100 00001122456778899999999999983 2211234444555544554433
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.054 Score=54.45 Aligned_cols=120 Identities=18% Similarity=0.130 Sum_probs=75.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCC-eEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+++|||+|.|.=+.-|+=.. ....++-+|....-+.|-+ +-+++ +.++...++.+.-....||+|+|..+-
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 599999999995555544221 2234777888776665543 34766 888888788775322229999986543
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
....++.-....+|+||.++..- +..-...+.+.+......++.....
T Consensus 146 ---~L~~l~e~~~pllk~~g~~~~~k----~~~~~~e~~e~~~a~~~~~~~~~~~ 193 (215)
T COG0357 146 ---SLNVLLELCLPLLKVGGGFLAYK----GLAGKDELPEAEKAILPLGGQVEKV 193 (215)
T ss_pred ---chHHHHHHHHHhcccCCcchhhh----HHhhhhhHHHHHHHHHhhcCcEEEE
Confidence 45567777888999999876421 1111223555666666666666543
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.024 Score=59.33 Aligned_cols=100 Identities=18% Similarity=0.200 Sum_probs=67.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEccccc-CC--CCCCceeEEEEc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRR-LP--FPAFSFDIVHCS 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~-LP--fpd~sFDlV~~s 271 (595)
++|||+=|=||+|+.+.+..|. .+++.+|.|..+++.|+++ ++ ...+...|+.. +. -..+.||+|++-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlD 202 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILD 202 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE-
T ss_pred CceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEEC
Confidence 4999999999999999887763 3677889999999999876 43 35677777533 11 124689999982
Q ss_pred C---CCc--ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 272 R---CLI--PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 272 ~---vL~--h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
- .-. ....+...++..+.++|+|||.++++..
T Consensus 203 PPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 203 PPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp -SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 111 1112345778889999999999988765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.01 Score=58.99 Aligned_cols=97 Identities=23% Similarity=0.252 Sum_probs=55.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc---hhhh-cccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGVY-HDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~-~~wce~f~typrtyDl~H~~~~~ 513 (595)
..|+|+|||.|.++..+...--=.-.|+-.|-. +.+..+-++ ++ +-.+ .|.. .++.=+.+||+|.++.++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE-ALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc-cCCCCCCCccEEEEeccc
Confidence 469999999999987774321000122222322 333332222 11 1111 1111 112113689999987665
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
- +..+...+|-++-++|+|||.+++.+
T Consensus 132 ~---------~~~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 R---------NVPDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred c---------cCCCHHHHHHHHHHhccCCcEEEEEE
Confidence 4 33567789999999999999999853
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0049 Score=70.70 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=61.6
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cc-hhhhcccCCCCCC-C-CCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GL-IGVYHDWCEPFST-Y-PRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~~~wce~f~t-y-prtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|... | ..+|+-.|-. +.|..+-+| |. +-+++.=+..++. + |.+||+|.++.++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 47999999999998777532 2 1244444443 444444333 11 1111111223332 3 3899999987665
Q ss_pred ccccC--CC--CCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 514 SLIKN--PG--SNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 514 s~~~~--~~--~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
-.+-+ |. ...+.-.+..+|-|+-|+|+|||.+++.|.
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 43310 00 000123456899999999999999999873
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.052 Score=57.02 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=91.7
Q ss_pred HHHHHHHHhhccccCC--CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHH---HHHHHcC-------------
Q 007645 184 DKYIDKLKQYIPITGG--TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI---QFALERG------------- 245 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g--~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l---~~A~erg------------- 245 (595)
..+++.|..+.+.... +.-+||-=|||.|.++..|+..|. ..-+.+.|--|+ .+++...
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh 208 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH 208 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence 3457777777775322 234799999999999999998865 344556665554 2333110
Q ss_pred --------------C--C-e----------EE--EEccccc-CC--CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcC
Q 007645 246 --------------I--P-A----------FV--AMLGTRR-LP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR 293 (595)
Q Consensus 246 --------------~--~-~----------~~--~~~d~~~-LP--fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLR 293 (595)
+ + + .+ ..+|..+ .+ -..++||+|+..+-+ .-..+.-.+|..|..+|+
T Consensus 209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFI-DTa~NileYi~tI~~iLk 287 (369)
T KOG2798|consen 209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFI-DTAHNILEYIDTIYKILK 287 (369)
T ss_pred ccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEe-echHHHHHHHHHHHHhcc
Confidence 0 0 0 00 0011000 01 112469999977533 544566689999999999
Q ss_pred CCcEEEEEcCCCCCCCC----------chhHHHHHHHHHHcCcEEEEee
Q 007645 294 PGGYLVISGPPVQWPKQ----------DKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 294 PGG~lvls~p~~~~~~~----------~~~w~~l~~la~~~~w~~v~~~ 332 (595)
|||+++=.+|-.+.-.. +...+.+..+++.++|+++..+
T Consensus 288 ~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 288 PGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 99999988884332222 1237779999999999999876
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.0066 Score=63.72 Aligned_cols=103 Identities=13% Similarity=0.211 Sum_probs=62.5
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHH----hhccchhhhcccCCCCC--CCCCccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVI----YDRGLIGVYHDWCEPFS--TYPRTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i----~eRGlig~~~~wce~f~--typrtyDl~H~ 509 (595)
+.....+.|+|+|||.|.++.++.+. |-. +++-.|-+..+..+ -+.|+-.-++-.+.-|- .+| .+|++-.
T Consensus 145 ~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~ 221 (306)
T TIGR02716 145 AKLDGVKKMIDVGGGIGDISAAMLKHFPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLF 221 (306)
T ss_pred cCCCCCCEEEEeCCchhHHHHHHHHHCCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEe
Confidence 34455689999999999999888654 321 23333434444433 34455332222222222 355 4798766
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+++-.|. .-....+|-++-|.|+|||.++|-|
T Consensus 222 ~~~lh~~~-------~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 222 CRILYSAN-------EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EhhhhcCC-------hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 66555442 1123458889999999999999874
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.035 Score=57.18 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=73.9
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccCC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLP 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~LP 259 (595)
....++.|.+.+....+. .|||||+|.|.++..|++.+ ..+..+|.++...+..+++ ..++.++..|...+.
T Consensus 15 ~~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~ 89 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD 89 (262)
T ss_dssp HHHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC
T ss_pred CHHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc
Confidence 456777888877665444 99999999999999999986 4777889999999988885 346888888887776
Q ss_pred CCC---CceeEEEEcCCCcccccCHHHHHHHHHhhcCC
Q 007645 260 FPA---FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRP 294 (595)
Q Consensus 260 fpd---~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRP 294 (595)
.++ +....|+++--. + -...++..+...-+.
T Consensus 90 ~~~~~~~~~~~vv~NlPy-~---is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY-N---ISSPILRKLLELYRF 123 (262)
T ss_dssp GGGHCSSSEEEEEEEETG-T---GHHHHHHHHHHHGGG
T ss_pred cHHhhcCCceEEEEEecc-c---chHHHHHHHhhcccc
Confidence 554 456677776322 1 234566666654343
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0047 Score=61.60 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=49.7
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhh----ccchhhhcccCCCCCCCC--CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYD----RGLIGVYHDWCEPFSTYP--RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~e----RGlig~~~~wce~f~typ--rtyDl~H~~~ 511 (595)
..|+|+|||.|.+++.|... .|..+-+-| .-+.++-+ -|+-.+---....+..+| ..||+|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 58999999999999777432 344443322 22322222 132111111223333443 6899999654
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~---------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP---------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc---------------cchHHHHHhhCCCcEEEEE
Confidence 433 2334555689999999884
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.012 Score=64.00 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=69.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-----CchhHHhhccchh---hhcccCCCCCCCC-CccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-----STLSVIYDRGLIG---VYHDWCEPFSTYP-RTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-----~~l~~i~eRGlig---~~~~wce~f~typ-rtyDl~H~~~~ 512 (595)
..++|+|||.|.|..+|... |= -||+-.+-. ..+.-+-++||-. +..|--+-+...| .++|.|+....
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~--~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPN--KLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCC--CCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 57999999999999999643 11 133333322 2223344556421 1222211122234 79999986421
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhcc-Ccee
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV-RWTA 568 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~-~W~~ 568 (595)
.+|. ...-.|=-...+|-|+=|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 202 -dPW~--KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 202 -VPWD--KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred -CCcc--ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2342 11112222368999999999999999986 6666666666654443 4444
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.0069 Score=64.91 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=69.1
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc---hhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl---ig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
..|||+|||.|.++..+.+. +- -+|+=.|.. +.+..+-++.- +-.++.-.+.++.-..+||+|-+...+.++.
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 47999999999988777442 11 133434433 55555555421 1111111122222237999998877776553
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh--H---------------HHHHHHHhHhccCcee
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--E---------------VIDKVSRIANTVRWTA 568 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~--~---------------~~~~~~~~~~~~~W~~ 568 (595)
+.+.+|-|+-|+|+|||.+++.+.. + -.+++.+++++.-++.
T Consensus 193 ---------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~ 251 (340)
T PLN02490 193 ---------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKD 251 (340)
T ss_pred ---------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeE
Confidence 3356899999999999999875321 0 1355666666666654
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0093 Score=61.20 Aligned_cols=132 Identities=15% Similarity=0.120 Sum_probs=78.4
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchhhhcccCCCCCC-CCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGVYHDWCEPFST-YPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce~f~t-yprtyDl~H~~~~~s~ 515 (595)
.+|+|+|||.|.++-+|... +- .+|+-.|.. ..+..+-+ -|+--.-.|+.+.++. ....||+|=++--+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 47999999999999887532 21 133334433 44443322 1321122344443321 2346899877654432
Q ss_pred ccC-----CCC--CCCCCC----------hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCC
Q 007645 516 IKN-----PGS--NKNSCS----------LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPG 576 (595)
Q Consensus 516 ~~~-----~~~--~~~~c~----------~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~ 576 (595)
... |.. ...+.. +.+++-...++|+|||.+++--..+...++..++....|+..+..|++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 110 000 001111 2377788889999999999865555677888888888898888877765
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.0048 Score=60.94 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=63.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-Cc-hhHHhhccchhhhcccCCCCCC--CCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-ST-LSVIYDRGLIGVYHDWCEPFST--YPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~-l~~i~eRGlig~~~~wce~f~t--yprtyDl~H~~~~~s~~~~ 518 (595)
-.|||+|||-|-=|-+|.++..=|.-|=-.... +. ..++-++||- ++.++.-+.+ +|..||+|-+..+|-..
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL-- 107 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFL-- 107 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccC--
Confidence 379999999999999998776544333222211 22 3355567774 3444443333 56899999987777654
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
++-.+..|+--|-.-++||||+++
T Consensus 108 -----~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 108 -----QRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp ------GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -----CHHHHHHHHHHHHhhcCCcEEEEE
Confidence 555677899999999999999988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.008 Score=58.77 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=53.8
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccCCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGS 521 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~ 521 (595)
+|+|+|||.|.++.+|.+..-. ++.-.|.. ..+..+.++|+--+..|..+.++.++ ++||+|-++..|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~---- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR---- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc----
Confidence 7999999999999998643211 12222322 45555556664323334333333354 7999999998886543
Q ss_pred CCCCCChhhhHHhhcccccC
Q 007645 522 NKNSCSLVDLMVEMDRMLRP 541 (595)
Q Consensus 522 ~~~~c~~~~~llEmdRiLRP 541 (595)
+...+|-||-|++++
T Consensus 90 -----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 -----NPEEILDEMLRVGRH 104 (194)
T ss_pred -----CHHHHHHHHHHhCCe
Confidence 355677777666554
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.036 Score=57.24 Aligned_cols=139 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred CCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCC-CCchhHHhhc-cchh-------hhcccCCCCCCCCCccchhhc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARK-SSTLSVIYDR-GLIG-------VYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~-~~~l~~i~eR-Glig-------~~~~wce~f~typrtyDl~H~ 509 (595)
..-++|+|+|||.|+++.+|... |- +.|.-.+- +..+.++-+. ++.+ +..|--+-+.+.|.+||+|=.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence 44678999999999999877542 32 22333332 2444444333 1111 011211112345678999965
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE---eCChHHHHHHHHhHhccCceeEEeccCCCCCCCceEEEE
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV---RDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVA 586 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~---rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~ 586 (595)
+. |.... .........++-++=++|+|||.+++ ..+...-..++.+...+.-.+.+...+ ...+.|+++
T Consensus 143 D~-~~~~~----~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~---~~~N~v~~a 214 (262)
T PRK04457 143 DG-FDGEG----IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAE---SHGNVAVFA 214 (262)
T ss_pred eC-CCCCC----CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecC---CCccEEEEE
Confidence 42 32110 01112245788999999999999997 333333333444444443333333221 123567888
Q ss_pred Ee
Q 007645 587 TK 588 (595)
Q Consensus 587 ~K 588 (595)
.|
T Consensus 215 ~~ 216 (262)
T PRK04457 215 FK 216 (262)
T ss_pred EC
Confidence 77
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.08 Score=53.04 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=77.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC----CeEEEEccccc-C
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI----PAFVAMLGTRR-L 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~----~~~~~~~d~~~-L 258 (595)
..+.+.+++.+..+ +++||.||-|-|.....+.++.+. .-.-++.++..++.-++.|. ++.+..+--++ +
T Consensus 88 tpiMha~A~ai~tk---ggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl 162 (271)
T KOG1709|consen 88 TPIMHALAEAISTK---GGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVL 162 (271)
T ss_pred hHHHHHHHHHHhhC---CceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhcccccccceEEEecchHhhh
Confidence 34556666666533 348999999999999888888553 23346889999988888764 23333332111 1
Q ss_pred -CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 259 -PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 259 -Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
.++|+.||-|.--.--++. ++.-.+.+.+.|+|||+|+|-+.
T Consensus 163 ~~L~d~~FDGI~yDTy~e~y-Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 163 NTLPDKHFDGIYYDTYSELY-EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred ccccccCcceeEeechhhHH-HHHHHHHHHHhhhcCCCceEEEe
Confidence 2578999999864332333 46667888999999999999875
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.06 Score=56.24 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=94.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchh
Q 007645 415 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIG 488 (595)
Q Consensus 415 f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig 488 (595)
...||+.+-..+..- +. ..+. +|+|||||.|--|.+|... |. .+|+-+|-. .-|.++ -.-|+.-
T Consensus 92 Pr~dTe~Lve~~l~~---~~---~~~~--~ilDlGTGSG~iai~la~~~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~ 161 (280)
T COG2890 92 PRPDTELLVEAALAL---LL---QLDK--RILDLGTGSGAIAIALAKEGPD--AEVIAVDISPDALALARENAERNGLVR 161 (280)
T ss_pred cCCchHHHHHHHHHh---hh---hcCC--cEEEecCChHHHHHHHHhhCcC--CeEEEEECCHHHHHHHHHHHHHcCCcc
Confidence 345777777776511 11 1122 9999999999999999543 33 456666644 555543 3335422
Q ss_pred hhcccCCCCCCCCCccchhhccCcccccc-----------CCC--CCCCCCC---hhhhHHhhcccccCCcEEEEeCChH
Q 007645 489 VYHDWCEPFSTYPRTYDLIHVSGIESLIK-----------NPG--SNKNSCS---LVDLMVEMDRMLRPEGTVVVRDSPE 552 (595)
Q Consensus 489 ~~~~wce~f~typrtyDl~H~~~~~s~~~-----------~~~--~~~~~c~---~~~~llEmdRiLRP~G~~i~rd~~~ 552 (595)
++.--+.-|+-.+.+||+|=++=-...-. +|. .-..... +..++-+..++|+|||++++.-...
T Consensus 162 ~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~ 241 (280)
T COG2890 162 VLVVQSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT 241 (280)
T ss_pred EEEEeeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC
Confidence 12212234555555899987665443221 010 0011122 2378888999999999999987766
Q ss_pred HHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 553 VIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 553 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
--+.|+++.....+ .........-.+.+.+++.++
T Consensus 242 q~~~v~~~~~~~~~-~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 242 QGEAVKALFEDTGF-FEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred cHHHHHHHHHhcCC-ceEEEEEecCCCceEEEEEEe
Confidence 67888888888885 222222223344566666554
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.068 Score=55.67 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=80.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cch----hhhcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI----GVYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli----g~~~~wce~f~typrtyDl~H~~~~ 512 (595)
..|+|+|||.|.++.+|... +- .+|+-.|-. ..+.++-+. |+- =.-.||.+++.. ..||+|=++--
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECCC
Confidence 47999999999999888653 21 134445543 455544432 331 123567665532 37999876532
Q ss_pred cccccC-----------CC----CCCCC-CChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHh-ccCceeEEeccCC
Q 007645 513 ESLIKN-----------PG----SNKNS-CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIAN-TVRWTAAVHDKEP 575 (595)
Q Consensus 513 ~s~~~~-----------~~----~~~~~-c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~-~~~W~~~~~~~~~ 575 (595)
+..-.+ |. +..+. -.+..++-+.-+.|+|||++++--....-+.++++.. ...|..... ..|
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~-~~D 270 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVEN-GRD 270 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEE-ecC
Confidence 221100 00 00000 0234678889999999999999755555567777665 455643222 122
Q ss_pred CCCCCceEEEEEec
Q 007645 576 GSNGREKILVATKS 589 (595)
Q Consensus 576 ~~~~~~~~l~~~K~ 589 (595)
-.+.++++++++.
T Consensus 271 -~~g~~R~~~~~~~ 283 (284)
T TIGR00536 271 -LNGKERVVLGFYH 283 (284)
T ss_pred -CCCCceEEEEEec
Confidence 3346788887653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.015 Score=57.90 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=49.8
Q ss_pred eeEEecccchhHHHhhhcCC--C---eEEEEeccCCCCCchhHH----hhccc---hhhhcccCCCCCCCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--P---VWVMNVVPARKSSTLSVI----YDRGL---IGVYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~---vwvmnv~p~~~~~~l~~i----~eRGl---ig~~~~wce~f~typrtyDl~H~~ 510 (595)
..|||+|||.|.+++.|... + |...-.-| .-+..+ -+.|+ .-+..|..+.+.. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 47999999999999988543 2 44332222 233322 22343 1112233332222 2589999965
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.... .+.-++-+.|+|||.+|+-
T Consensus 154 ~~~~---------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGP---------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc---------------cccHHHHHhcCcCcEEEEE
Confidence 4432 2334566789999999884
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.16 Score=55.07 Aligned_cols=115 Identities=14% Similarity=0.009 Sum_probs=77.9
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCce-------------------------------E-------EE
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILT-------------------------------L-------SF 228 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~-------------------------------~-------~v 228 (595)
...|..+.....+ ..++|-=||+|+++.+.+-.+... . .+
T Consensus 180 AaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 3344444444443 489999999999998776553210 0 26
Q ss_pred EeecCcHHHHHHHHHc----CCC--eEEEEcccccCCCCCCceeEEEEcCCCcccccC---HH----HHHHHHHhhcCCC
Q 007645 229 APRDSHKAQIQFALER----GIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY---NA----TYLIEVDRLLRPG 295 (595)
Q Consensus 229 ~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d---~~----~~L~Ei~RvLRPG 295 (595)
.+.|+++.+++.|+.+ |+. +.|.++|+..++-+-+.+|+|+|+--.-.-..+ .+ .+...+.+.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 7999999999999876 554 788999998886444789999998533111111 11 3445666777778
Q ss_pred cEEEEEcC
Q 007645 296 GYLVISGP 303 (595)
Q Consensus 296 G~lvls~p 303 (595)
+.+++++.
T Consensus 338 s~~v~tt~ 345 (381)
T COG0116 338 SRYVFTTS 345 (381)
T ss_pred ceEEEEcc
Confidence 88888875
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.024 Score=56.40 Aligned_cols=100 Identities=7% Similarity=0.026 Sum_probs=64.1
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhh----hcccCCCCCCCCCccchhhccCccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGV----YHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~----~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
-..|+|+|||.|.|+.+|.+... .|+=.|-. +.+..+.+|---.. ..=.+..+..-|.+||+|=+..++.++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY 132 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence 46899999999999999987643 34444544 56666655531110 111112222334789988776666544
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
..-.+..++-++.|+++|++++.+....
T Consensus 133 -------~~~~~~~~l~~i~~~~~~~~~i~~~~~~ 160 (219)
T TIGR02021 133 -------PASDMAKALGHLASLTKERVIFTFAPKT 160 (219)
T ss_pred -------CHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 2234677899999999998888876443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.049 Score=58.70 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=45.1
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
..++.+.+.+.... .+|||+-||+|.|+..|++.. -.+.++|+++++++.|+++ ++ ++.+..+++++
T Consensus 184 ~l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 184 KLYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 33555566665442 269999999999999999873 3788889999999988765 44 46777665443
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.018 Score=57.20 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=61.9
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
-.+|||+|||.|.|+.+|.+... .|.-.|.. +-+..+-++ |+-..++-....+..-+.+||+|-+..++.++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~ 140 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY 140 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence 46899999999999999976542 24444433 555555443 22111111112233334789999998888765
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
. .-.+..++-++-|++++++.+.+....
T Consensus 141 ~-------~~~~~~~l~~l~~~~~~~~~i~~~~~~ 168 (230)
T PRK07580 141 P-------QEDAARMLAHLASLTRGSLIFTFAPYT 168 (230)
T ss_pred C-------HHHHHHHHHHHHhhcCCeEEEEECCcc
Confidence 3 234667888888888766666554443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.11 Score=52.41 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=80.6
Q ss_pred HHHHHHHHhh---ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcH----HHHHHHHHcCCCeEEEEcccc
Q 007645 184 DKYIDKLKQY---IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHK----AQIQFALERGIPAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~---l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~----~~l~~A~erg~~~~~~~~d~~ 256 (595)
.++...|..- ++...|+ +||-+|+.+|+....+.+---....+.+++.|+ ..++.|++|. ++.-+..|+.
T Consensus 56 SKLaAai~~Gl~~~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~DAr 132 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILEDAR 132 (229)
T ss_dssp -HHHHHHHTT-S--S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES-TT
T ss_pred hHHHHHHHcCccccCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeeccCC
Confidence 3444444333 3445555 999999999988888877621122466778887 4555666654 5555555554
Q ss_pred cC---CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC--CCCC-CCchhHHHHHHHHHHcCcEEEE
Q 007645 257 RL---PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP--VQWP-KQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 257 ~L---Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~--~~~~-~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.- ..--+.+|+|++--. .++....++..+...||+||.++++... .... ..+..+..-.+.+++.+++.+.
T Consensus 133 ~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~e 209 (229)
T PF01269_consen 133 HPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPLE 209 (229)
T ss_dssp SGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEEE
T ss_pred ChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChhe
Confidence 21 111248999997532 2234457788888999999999998642 1111 1222354444455555666654
Q ss_pred e
Q 007645 331 V 331 (595)
Q Consensus 331 ~ 331 (595)
.
T Consensus 210 ~ 210 (229)
T PF01269_consen 210 Q 210 (229)
T ss_dssp E
T ss_pred E
Confidence 3
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.033 Score=58.67 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=64.9
Q ss_pred eeEEecccchhH--HHhhhcCC-CeEEEEeccCCCCCchhHHhhccchhhhcc-cCCCCCCCCCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGG--FAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIGVYHD-WCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~--faa~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~-wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||+|= .||+++.- .|.-.-+=|..-.++..-+-.-|+-.-+.- ..+.+.. ..||||=|+=+....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL-- 238 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVL-- 238 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHH--
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHH--
Confidence 499999999994 45555442 354443333221222222333333221110 1122222 799999876655532
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
..++=++.+.|+|||++|++--. +-.+.|.+..+. -|++.....++ .--.++++|+
T Consensus 239 ----------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~----~W~~l~~~Kk 295 (295)
T PF06325_consen 239 ----------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEG----EWVALVFKKK 295 (295)
T ss_dssp ----------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEET----TEEEEEEEE-
T ss_pred ----------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEEC----CEEEEEEEeC
Confidence 23566689999999999998211 113444444454 66655443221 2345666664
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.013 Score=57.81 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=75.7
Q ss_pred hhhccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCC-Cccchhhcc
Q 007645 433 LNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 433 l~~~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~ 510 (595)
+...+..+ -.|||.|||-|.+.++|.+ +.|=..-|= ..+..+.-..+||+-=+-+|.=+.++.|| .+||.+=.+
T Consensus 7 I~~~I~pg--srVLDLGCGdG~LL~~L~~~k~v~g~GvE--id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 7 IAEWIEPG--SRVLDLGCGDGELLAYLKDEKQVDGYGVE--IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred HHHHcCCC--CEEEecCCCchHHHHHHHHhcCCeEEEEe--cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence 34456665 5799999999999999977 555443331 22366778899999988889999999999 999999877
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
......+ .-+.+|-||= |=|.-+|++
T Consensus 83 qtLQ~~~---------~P~~vL~Eml---RVgr~~IVs 108 (193)
T PF07021_consen 83 QTLQAVR---------RPDEVLEEML---RVGRRAIVS 108 (193)
T ss_pred hHHHhHh---------HHHHHHHHHH---HhcCeEEEE
Confidence 7776553 3567999994 556677775
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.099 Score=52.13 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=64.5
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC-------
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP------- 259 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP------- 259 (595)
+.+|.+...... ...+|+|+|+..|+|+..+++.......+.++|+.+-- --..+.+.+.|...-+
T Consensus 33 L~el~~k~~i~~-~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------~~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 33 LLELNEKFKLFK-PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------PIPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred HHHHHHhcCeec-CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------cCCCceEEeeeccCccHHHHHHH
Confidence 445555444322 23489999999999999988873322235555653311 1123667777654432
Q ss_pred -CCCCceeEEEEcCCC---cccccCH-------HHHHHHHHhhcCCCcEEEEEc
Q 007645 260 -FPAFSFDIVHCSRCL---IPFTAYN-------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 -fpd~sFDlV~~s~vL---~h~~~d~-------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+....+|+|.|-..- .++..|. ..++.-+..+|+|||.|++..
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 334457999973322 1221111 245666777999999999976
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.028 Score=58.77 Aligned_cols=125 Identities=21% Similarity=0.204 Sum_probs=78.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccC-C-CCCCceeEEEE----
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRL-P-FPAFSFDIVHC---- 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~L-P-fpd~sFDlV~~---- 270 (595)
.+|||+.+|.|.=+..+++.-.....+.+.|++...++..+++ |.. +.....|.... + .....||.|+.
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 3899999999988888887733234788899999888766544 554 34444555443 1 23346999996
Q ss_pred cCC--Ccccc--------c-------CHHHHHHHHHhhc----CCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc-CcEE
Q 007645 271 SRC--LIPFT--------A-------YNATYLIEVDRLL----RPGGYLVISGPPVQWPKQDKEWADLQAVARAL-CYEL 328 (595)
Q Consensus 271 s~v--L~h~~--------~-------d~~~~L~Ei~RvL----RPGG~lvls~p~~~~~~~~~~w~~l~~la~~~-~w~~ 328 (595)
+.. +..-+ . -...+|..+.+.+ ||||+++.++-.....+. ...++.++++. .|++
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eEN---E~vV~~fl~~~~~~~l 243 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEEN---EEVVEKFLKRHPDFEL 243 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGT---HHHHHHHHHHSTSEEE
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHH---HHHHHHHHHhCCCcEE
Confidence 221 11100 0 1126789999999 999999999863322222 23455565544 3444
Q ss_pred E
Q 007645 329 I 329 (595)
Q Consensus 329 v 329 (595)
+
T Consensus 244 ~ 244 (283)
T PF01189_consen 244 V 244 (283)
T ss_dssp E
T ss_pred E
Confidence 3
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.024 Score=56.35 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=61.1
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc-hhhh-cccCCCCCCCCCccchhhccCcccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-IGVY-HDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~-~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
-..|||+|||.|-+..+|... +- .++.-.|-. +.+..+-++-- +.+. .|-.++|+ +++||+|-+.+++.+..
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhCC
Confidence 457999999999999999664 21 234444533 56665544310 1111 22223332 28999999999998652
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.-.+..++-||-|++ +++++|.
T Consensus 120 -------p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 120 -------PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred -------HHHHHHHHHHHHhhc--CcEEEEE
Confidence 235677899999998 5788875
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.037 Score=58.50 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=67.5
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccc---hhh-hcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGL---IGV-YHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl---ig~-~~~wce~f~typrtyDl~H~~~~ 512 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+.++-+ .|+ |-. -.|+-+.++ +.+||+|-++--
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECCC
Confidence 57999999999999998643 32 345555543 55554433 243 212 224333332 268999998743
Q ss_pred ccccc-----------CCCC----CCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhc--cCc
Q 007645 513 ESLIK-----------NPGS----NKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANT--VRW 566 (595)
Q Consensus 513 ~s~~~-----------~~~~----~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~--~~W 566 (595)
+.... .|.. ..+... ...++-+.-+.|+|||.+++--..+ ..++.++... +.|
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE
Confidence 32110 0100 000111 2478889999999999999852222 3346666554 445
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.023 Score=56.24 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=50.8
Q ss_pred eeEEecccchhHHHhhhcC-----CCeEEEEeccCCCCCchhHHhhccchh---hh-cccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRGLIG---VY-HDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~-----~~vwvmnv~p~~~~~~l~~i~eRGlig---~~-~~wce~f~typrtyDl~H~~~~~ 513 (595)
..|||+|||.|.+++.|.. ..|..+-+.|.-....-+-+...|+.. ++ .|-.+.++. ..+||.|.+...+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~~~~~ 152 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIVTAAA 152 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEEccCc
Confidence 4799999999999877743 234444333321110001222335422 12 233333322 2689999977654
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.. +.=|+-|.|+|||.+++-
T Consensus 153 ~~---------------~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 153 ST---------------IPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ch---------------hhHHHHHhcCcCcEEEEE
Confidence 32 223667999999999984
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.03 Score=49.49 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=52.2
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHH----hhccchhh--h-cc--cCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVI----YDRGLIGV--Y-HD--WCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i----~eRGlig~--~-~~--wce~f~typrtyDl~H~~~ 511 (595)
..|+|+|||.|.++..+.+. |- .+|+-.|-. ..+..+ -+.|+-.+ . .| |+.. .-+.+||.|=...
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~~ 96 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIGG 96 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEECC
Confidence 48999999999999988653 21 234444433 333322 12232111 0 11 2211 1235788874332
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.. -....++-++-|.|+|||++++.
T Consensus 97 ~~------------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 97 SG------------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred cc------------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 22 12357899999999999999974
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.023 Score=57.38 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=65.8
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCCCchhHHhhcc-chhhhcccCCCCCCCCCccchhhccCcc
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
......++.|+|+|+|.|.|++++.. .|=+ .++-.|-|..+..+-+.. +--+=|| -|.++|. ||++...+++
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~vL 168 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAYPNL--RATVFDLPEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRHVL 168 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHSTTS--EEEEEE-HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEESSG
T ss_pred cccccCccEEEeccCcchHHHHHHHHHCCCC--cceeeccHhhhhcccccccccccccc---HHhhhcc-ccceeeehhh
Confidence 45678899999999999999999943 2321 122234444444444311 1111122 2567888 9999999999
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCC--cEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPE--GTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~--G~~i~rd 549 (595)
-.|. .-....||--+=+-|+|| |.++|-|
T Consensus 169 h~~~-------d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 169 HDWS-------DEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GGS--------HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhcc-------hHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 9885 233445999999999999 9999863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.29 Score=48.92 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=76.1
Q ss_pred EEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc-cccCCCCCCceeEEEEcCCCcc
Q 007645 204 ALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG-TRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 204 VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d-~~~LPfpd~sFDlV~~s~vL~h 276 (595)
|.||||--|.+..+|++++. +-.+.+.|+++.-++.|++. ++ .+.+..+| ...++ +.+..|.|+.+.+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC-CCCCCCEEEEecCCHH
Confidence 68999999999999999976 44677889999999998865 43 35566665 34443 2223789887765422
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
-...+|.+....++..-.|++.- ......+++.+.+.+|.++.+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP--------~~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQP--------NTHAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEE--------SS-HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeC--------CCChHHHHHHHHHCCCEEEEe
Confidence 23466777777777777888863 223567899999999999876
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.17 Score=50.08 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=61.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.++|||+|+|+|..+..-+..|.. .+...|+.+...+... .+|..+.+...|... .+..||+++.+.++..
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPPAFDLLLAGDLFYN 154 (218)
T ss_pred cceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCcceeEEEeeceecC
Confidence 449999999999877777666532 4455577766665543 346666666554432 5678999999987744
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEE-EcC
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVI-SGP 303 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvl-s~p 303 (595)
-. ....++. ..+.|+..|.-++ -+|
T Consensus 155 ~~-~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 155 HT-EADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred ch-HHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 22 2345555 5555555555444 444
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.067 Score=55.92 Aligned_cols=121 Identities=23% Similarity=0.274 Sum_probs=68.6
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchh----hhcccCCCCCCCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~wce~f~typ-rtyDl~H~~~ 511 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+.++-+ .|+-. +..|+-+. .| .+||+|=++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEECC
Confidence 57999999999999999653 21 134444543 44544433 25421 12233333 34 5899998763
Q ss_pred cccccc-----------CCC----CCCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeE
Q 007645 512 IESLIK-----------NPG----SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 512 ~~s~~~-----------~~~----~~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~ 569 (595)
-+.... .|. +..+... ...++-+.-+.|+|||.+++--..+. ++++++.....|.-.
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~ 270 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWL 270 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCcee
Confidence 332110 000 0001111 24678889999999999998533333 577777765544333
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.033 Score=53.67 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=69.9
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCC-----eEEEEeccCCCCCchhHHhhccch---hhhcccCCCCCCCCCccchhh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDP-----VWVMNVVPARKSSTLSVIYDRGLI---GVYHDWCEPFSTYPRTYDLIH 508 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~-----vwvmnv~p~~~~~~l~~i~eRGli---g~~~~wce~f~typrtyDl~H 508 (595)
+..++-.+|+|.||+-|||..++.... |+-+-+.|.+....+..+ +|=| .+...-.+.++.=.+.+|||-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 345567999999999999999998776 445555555222222221 2211 111111222221116899999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHh---hcccccCCcEEEEe-----CChHHHHHHHHhHhccCceeEEeccCCCCCCC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVE---MDRMLRPEGTVVVR-----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGR 580 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llE---mdRiLRP~G~~i~r-----d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~ 580 (595)
|+..+..-.++..+ +--.+.-++-+ +-..|+|||.+|+. +..+++..++..=+.+++ ..-.-..+...
T Consensus 97 ~D~~~~~~g~~~~d-~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~---~Kp~~sr~~s~ 172 (181)
T PF01728_consen 97 SDMAPNVSGDRNID-EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKI---VKPPSSRSESS 172 (181)
T ss_dssp E-------SSHHSS-HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEE---EE-TTSBTTCB
T ss_pred cccccCCCCchhhH-HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEE---EECcCCCCCcc
Confidence 98855421100000 00011112222 23559999988874 223555555554333322 22333455667
Q ss_pred ceEEEEEe
Q 007645 581 EKILVATK 588 (595)
Q Consensus 581 ~~~l~~~K 588 (595)
|.-+||.+
T Consensus 173 E~Ylv~~~ 180 (181)
T PF01728_consen 173 EEYLVCRG 180 (181)
T ss_dssp EEEEESEE
T ss_pred EEEEEEcC
Confidence 88888764
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.11 Score=57.27 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=80.1
Q ss_pred eEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHHhh----ccc-h-hhhcccCCCCCCCC--CccchhhccCcc
Q 007645 444 NIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD----RGL-I-GVYHDWCEPFSTYP--RTYDLIHVSGIE 513 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~e----RGl-i-g~~~~wce~f~typ--rtyDl~H~~~~~ 513 (595)
+|+|+|||.|.++.+|.. .|- .+|+-.|-. ..|.++-+ .|+ + =+-.|+.+. .+| ..||+|-++--+
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~--~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDT--DMPSEGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc--ccccCCCccEEEECCCC
Confidence 799999999999988753 232 234444443 45544433 232 1 122355443 122 479999987644
Q ss_pred ccccC-----------CC----CCCCCCC-hhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 514 SLIKN-----------PG----SNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 514 s~~~~-----------~~----~~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
..-.+ |. ...+... +..|+-+.-+.|+|||++++--..+.-+.+++++....|+....-. .-
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~k--Dl 407 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLP--DL 407 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEE--cC
Confidence 32110 00 0000000 2256667788999999998854445567888888887776433322 22
Q ss_pred CCCceEEEEEec
Q 007645 578 NGREKILVATKS 589 (595)
Q Consensus 578 ~~~~~~l~~~K~ 589 (595)
.+.++++++++.
T Consensus 408 ~G~dR~v~~~~~ 419 (423)
T PRK14966 408 AGLDRVTLGKYM 419 (423)
T ss_pred CCCcEEEEEEEh
Confidence 346788888753
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.057 Score=50.30 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=56.6
Q ss_pred CcceEEEECCCCcHHHHHHhh-----cCCceEEEEeecCcHHHHHHHHHcCC--------CeEEEEcccccCCCCCCcee
Q 007645 200 TLRTALDMGCGVASFGGSMLS-----ENILTLSFAPRDSHKAQIQFALERGI--------PAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~-----~gv~~~~v~~vD~s~~~l~~A~erg~--------~~~~~~~d~~~LPfpd~sFD 266 (595)
...+|+|+|||.|.++..|+. . ....+.++|.++..++.+.++.- ...+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 355899999999999999988 3 44588889999998888776521 1122222222111 145566
Q ss_pred EEEEcCCCcccccCHH-HHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNA-TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~-~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++.. |-..+.. .+|+-+.+ ++-.+++..|
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vp 132 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVP 132 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcC
Confidence 77654 3333333 34444444 6666666554
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.03 Score=55.92 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=58.4
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCC
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG 520 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~ 520 (595)
--.|-|||||-|-.|+++.+. .|.-.-.|+....=| +-|= + | -|+.. -+.|++= -|+|+-
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vt---acdi---a--~---vPL~~--~svDv~V--fcLSLM---- 133 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVT---ACDI---A--N---VPLED--ESVDVAV--FCLSLM---- 133 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEE---ES-T---T--S----S--T--T-EEEEE--EES-------
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEE---EecC---c--c---CcCCC--CceeEEE--EEhhhh----
Confidence 357999999999999887533 455555555433211 0000 0 0 01121 6777743 455543
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHH---HhHhccCceeEEeccC
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVS---RIANTVRWTAAVHDKE 574 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~---~~~~~~~W~~~~~~~~ 574 (595)
+=+..+.|.|-.|||||||.++|-+-.+-.+.++ +.++++-.++...|..
T Consensus 134 ----GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~ 186 (219)
T PF05148_consen 134 ----GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDES 186 (219)
T ss_dssp ----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred ----CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccC
Confidence 2567799999999999999999975444333333 4567777887776543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.022 Score=59.33 Aligned_cols=97 Identities=22% Similarity=0.328 Sum_probs=72.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchh----HHhhccch----hhhcccCCCCCCCCCccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLS----VIYDRGLI----GVYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~----~i~eRGli----g~~~~wce~f~typrtyDl~ 507 (595)
|+.| -.|||+|||-||.+-++... +|=|.-|.-.. +|+. -|-++||- -.++||-+.=. .||=|
T Consensus 70 L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~--~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e----~fDrI 141 (283)
T COG2230 70 LKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSE--EQLAYAEKRIAARGLEDNVEVRLQDYRDFEE----PFDRI 141 (283)
T ss_pred CCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCH--HHHHHHHHHHHHcCCCcccEEEecccccccc----cccee
Confidence 5555 68999999999999888655 67655554332 5554 37779987 44667654333 39999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
=+-+.|.+. ..-+..+++-=+.++|+|||-+++.
T Consensus 142 vSvgmfEhv-------g~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 142 VSVGMFEHV-------GKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eehhhHHHh-------CcccHHHHHHHHHhhcCCCceEEEE
Confidence 999999876 3456788999999999999999875
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.14 Score=53.14 Aligned_cols=103 Identities=18% Similarity=0.129 Sum_probs=58.9
Q ss_pred CcceEEEECCCC--cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCC--eEEEEcccccCC-----------CC
Q 007645 200 TLRTALDMGCGV--ASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIP--AFVAMLGTRRLP-----------FP 261 (595)
Q Consensus 200 ~~r~VLDIGCGt--G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~--~~~~~~d~~~LP-----------fp 261 (595)
.++..||||||- ....-.++++-.....++-+|.++-.+..++.. ..+ ..++.+|+.+.. +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 367899999993 344555655533445777789999888866543 334 677777754421 11
Q ss_pred -CCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 -AFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 -d~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++.. .+....+|++..+ ++..++..+...|.||.+|+++-.
T Consensus 148 ~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 148 FDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2222 4555677866653 667999999999999999999864
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.12 Score=55.10 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--cCC--C-----eEEEEccccc
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--RGI--P-----AFVAMLGTRR 257 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--rg~--~-----~~~~~~d~~~ 257 (595)
++.+....+... ..+|||+|.|.|.-+.++-+.-..--+.+-++.|+..-+.... ..+ . +.-++ ..+
T Consensus 102 L~~L~~~~~dfa--pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt--~dR 177 (484)
T COG5459 102 LDELQKRVPDFA--PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVT--EDR 177 (484)
T ss_pred HHHHHHhCCCcC--cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccc--hhc
Confidence 344555555444 3479999999997665544331111223334455544333221 111 0 11112 234
Q ss_pred CCCC-CCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHH
Q 007645 258 LPFP-AFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAV 320 (595)
Q Consensus 258 LPfp-d~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~l 320 (595)
++++ ...|++|+...-|-|... .....+..+..+++|||.|+|.++. .-.+|+.+.+.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG-----tp~Gf~~I~rA 238 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG-----TPAGFERILRA 238 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC-----CchhHHHHHHH
Confidence 4444 345777766554444331 1124788888999999999999862 12346666553
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.038 Score=54.72 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=49.3
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh--hhcccCCCCCCCC--CccchhhccCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYHDWCEPFSTYP--RTYDLIHVSGI 512 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~wce~f~typ--rtyDl~H~~~~ 512 (595)
-..|||+|||.|.+++.|....- .|.-.+.. +-+..+-++ |+-. +.+ ...+.++| .+||+|.++..
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~--~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRH--GDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEE--CCcccCCCcCCCcCEEEEccC
Confidence 35799999999999887654311 23333322 333333222 3311 111 11233444 68999986654
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.. +.-++-+.|+|||.+++.
T Consensus 154 ~~~---------------~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 APE---------------IPRALLEQLKEGGILVAP 174 (212)
T ss_pred chh---------------hhHHHHHhcCCCcEEEEE
Confidence 432 233456899999999885
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.061 Score=51.60 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=64.0
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccch---hhhcccCCCCCCCCCccchhhccCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLI---GVYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGli---g~~~~wce~f~typrtyDl~H~~~~ 512 (595)
-.+|+|+|||.|-.+.+|... |-.. |+-.|.. +-+..+.+ -|+- -..+|+.+.+. +..||+|=++--
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEccc
Confidence 357999999999888887543 3222 3333433 34443322 2222 23445555554 489999876654
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEE--EEeCChHHHHHHHHhHh
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTV--VVRDSPEVIDKVSRIAN 562 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~--i~rd~~~~~~~~~~~~~ 562 (595)
|..= .......+..++-+-=++|+|||.+ +++.+...-..++++..
T Consensus 108 ~~~~----~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 108 FHAG----GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp SBTT----SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred hhcc----cccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 3210 0011134568889999999999977 45555544444555544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.1 Score=50.23 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=45.0
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--CCCCc-eeEEEEcC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFS-FDIVHCSR 272 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--fpd~s-FDlV~~s~ 272 (595)
+|+|+.||.|..+..+++..- .+.++|+++..++.|+.+ |+ ++.++.+|..++. +..+. ||+|+++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 799999999999999999843 677889999999998876 54 4788888854331 12122 89999853
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.35 Score=52.74 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=17.0
Q ss_pred CCCCCceeEEEEcCCCcccc
Q 007645 259 PFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~ 278 (595)
-||+++.+++||+.++ ||.
T Consensus 157 LfP~~Slh~~~Ss~sl-HWL 175 (386)
T PLN02668 157 LFPARSIDVFHSAFSL-HWL 175 (386)
T ss_pred ccCCCceEEEEeeccc-eec
Confidence 3889999999999999 776
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.018 Score=50.45 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=38.1
Q ss_pred EEECCCCcHHHHHHhhcCCce--EEEEeecCcH---HHHHHHHHcCC--CeEEEEcccccC--CCCCCceeEEEEcCCCc
Q 007645 205 LDMGCGVASFGGSMLSENILT--LSFAPRDSHK---AQIQFALERGI--PAFVAMLGTRRL--PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 205 LDIGCGtG~~a~~La~~gv~~--~~v~~vD~s~---~~l~~A~erg~--~~~~~~~d~~~L--Pfpd~sFDlV~~s~vL~ 275 (595)
||||+..|..+..+++.--.. ..+..+|..+ ...+..++.+. .+.+...+.... .++.++||+|+.-. .
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg--~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG--D 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--C
Confidence 689999998888877651111 2567778777 34444443333 466777664322 12357899999754 2
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
|-.+.....+..+.+.|+|||.+++-
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 33234456788899999999999874
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.51 Score=49.30 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=61.6
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc-------CCCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER-------GIPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er-------g~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
.++|+=||||.=-++..++.. ......+.++|+++++++.|++- +....|...|....+..-..||+|+.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 458999999987666655543 23356788999999999988642 3356788888776665557899999775
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....-.++-..+|..+.+.++||..+++-.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 442222355799999999999999999864
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.063 Score=56.48 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=66.1
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc------c--chhhhcccCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------G--LIGVYHDWCEPF 497 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR------G--lig~~~~wce~f 497 (595)
+.+...+...++.+ .+|+|+|||.|.++..|.+.-.=.-+|++.|-. .-|..+.++ + +.++..|-++.+
T Consensus 51 ~~~~~~ia~~~~~~--~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 51 ERHADEIAAATGAG--CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred HHHHHHHHHhhCCC--CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 33444444445444 479999999999998886541002467888866 666666554 1 123444555443
Q ss_pred CCCCCcc----c-hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 498 STYPRTY----D-LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 498 ~typrty----D-l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+ +|..+ + ++.....|..+ .+-....+|-++=+.|+|||.++|.
T Consensus 129 ~-~~~~~~~~~~~~~~~gs~~~~~-------~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 129 A-LPPEPAAGRRLGFFPGSTIGNF-------TPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred h-hhcccccCCeEEEEecccccCC-------CHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 23333 2 23322333322 2223457899999999999999974
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.018 Score=56.90 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=72.0
Q ss_pred eeEEecccchhHHHhhhc--CCCeEEEEeccCCCC-----CchhHHhhccchhhhcccCCCCCC----C-CCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-----STLSVIYDRGLIGVYHDWCEPFST----Y-PRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~--~~~vwvmnv~p~~~~-----~~l~~i~eRGlig~~~~wce~f~t----y-prtyDl~H~~ 510 (595)
..++|+|||.|.|..++. ..+. |++=.+-. ..+.-+..+||--+.--.|.+... . |.+.|-||
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~---n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~-- 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDI---NFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIY-- 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTS---EEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEE--
T ss_pred CeEEEecCCCCHHHHHHHHHCCCC---CEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEE--
Confidence 389999999999999883 3332 33333322 345567777875544444555442 2 36777766
Q ss_pred CccccccCCCC----CCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhcc--CceeE
Q 007645 511 GIESLIKNPGS----NKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV--RWTAA 569 (595)
Q Consensus 511 ~~~s~~~~~~~----~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~--~W~~~ 569 (595)
..+-||=- .+.|=--...|-+|-|+|+|||.+-++ |..+..+.+.+.+... .++..
T Consensus 94 ---i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 94 ---INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred ---EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 22222211 223333447888999999999999886 7778888888877664 55544
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.13 Score=50.76 Aligned_cols=136 Identities=18% Similarity=0.080 Sum_probs=73.7
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhc-CC--ceEEEEeecCc-------HHHHHHHHHcCC-CeEEEEcccccCC-
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSE-NI--LTLSFAPRDSH-------KAQIQFALERGI-PAFVAMLGTRRLP- 259 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv--~~~~v~~vD~s-------~~~l~~A~erg~-~~~~~~~d~~~LP- 259 (595)
.....+.+. +|+|+=-|.|.|++-+... +. .+..+.+.+.. +.+-..+++... +.+..-.....++
T Consensus 42 ~FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~ 119 (238)
T COG4798 42 AFAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGA 119 (238)
T ss_pred EEeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCC
Confidence 344456655 9999999999999988776 22 34566665541 122222222211 1111111122222
Q ss_pred ------CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC--CCCchh------HHHHHHHHHHcC
Q 007645 260 ------FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW--PKQDKE------WADLQAVARALC 325 (595)
Q Consensus 260 ------fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~--~~~~~~------w~~l~~la~~~~ 325 (595)
.+..++|.++.+.-+ | ....+.+-.++.+.|||||.+++.+....- ...+.. -..+....+..+
T Consensus 120 pq~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaG 197 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAG 197 (238)
T ss_pred CCcccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhc
Confidence 223345544444433 3 234568899999999999999998752211 111110 112555666778
Q ss_pred cEEEEe
Q 007645 326 YELIAV 331 (595)
Q Consensus 326 w~~v~~ 331 (595)
|++..+
T Consensus 198 Fkl~ae 203 (238)
T COG4798 198 FKLEAE 203 (238)
T ss_pred ceeeee
Confidence 877755
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.071 Score=54.72 Aligned_cols=107 Identities=17% Similarity=0.245 Sum_probs=69.4
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCCCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNK 523 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~ 523 (595)
.|-|||||-|-.|. =...+|-.|-+|+.+..-+.-=|-. -|+. .+|-|++- .|+|+-
T Consensus 183 vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~V~~cDm~~-----------vPl~--d~svDvaV--~CLSLM------- 239 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS-SERHKVHSFDLVAVNERVIACDMRN-----------VPLE--DESVDVAV--FCLSLM------- 239 (325)
T ss_pred EEEecccchhhhhh-ccccceeeeeeecCCCceeeccccC-----------CcCc--cCcccEEE--eeHhhh-------
Confidence 58899999887765 3455788888888766522211100 0111 27778743 566653
Q ss_pred CCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHh---HhccCceeEEeccC
Q 007645 524 NSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRI---ANTVRWTAAVHDKE 574 (595)
Q Consensus 524 ~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~---~~~~~W~~~~~~~~ 574 (595)
.-++-+.+.|..|||+|||.+.|-+-.+-...++.+ +++|-.++...|.+
T Consensus 240 -gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 240 -GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred -cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhh
Confidence 267789999999999999999997544444444433 45677777666444
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.16 Score=50.49 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=51.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH-------HHHHcC----C-CeEEEEcc-cccCC--CCCCce-e
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ-------FALERG----I-PAFVAMLG-TRRLP--FPAFSF-D 266 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~-------~A~erg----~-~~~~~~~d-~~~LP--fpd~sF-D 266 (595)
.+.|||||.|.+...|+..... ..+.|.++-...-+ ..+.+. . ++.+.... ..-+| |..++. -
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred eEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 6899999999999999988443 34556655443333 332221 1 11111111 11122 122221 1
Q ss_pred EEEEcCCCccccc-------CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTA-------YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~-------d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.++..-- |+.. -...++.+..-+|++||.++.++
T Consensus 142 mff~fpdp-Hfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDP-HFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCCh-hHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22221111 2110 11267899999999999999876
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.6 Score=45.62 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.4
Q ss_pred CChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhcc
Q 007645 526 CSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTV 564 (595)
Q Consensus 526 c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~ 564 (595)
..+..++-++-|+|+|||.+++-... +.+.++.+..+.+
T Consensus 119 ~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~ 158 (196)
T PRK07402 119 RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL 158 (196)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence 35678999999999999999987432 3344455555444
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.016 Score=51.25 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=55.1
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----cc-------chhhhcccCCCCCCCCCccchhhccC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RG-------LIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RG-------lig~~~~wce~f~typrtyDl~H~~~ 511 (595)
.|||++||.|.|+.++...- .-+++=.|-. ..+.++-. .| ..|-+.+..+.++. ..||+|=++-
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~np 78 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVTNP 78 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE--
T ss_pred EEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEECC
Confidence 69999999999998886543 2233333322 22221111 11 12333333333433 8899999888
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
-|......... .+=....++-++.|+|||||.+++
T Consensus 79 P~~~~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 79 PYGPRSGDKAA-LRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp STTSBTT-----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccchh-hHHHHHHHHHHHHHHcCCCeEEEE
Confidence 88754200011 111445788899999999999876
|
... |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.0098 Score=51.66 Aligned_cols=92 Identities=24% Similarity=0.229 Sum_probs=56.0
Q ss_pred EEecccchhHHHhhhcCCC--eEEEEeccCCCC-CchhHHhhccc-hh-hhcccCCCCCCCC---CccchhhccCc-ccc
Q 007645 445 IMDMNAFFGGFAAALTSDP--VWVMNVVPARKS-STLSVIYDRGL-IG-VYHDWCEPFSTYP---RTYDLIHVSGI-ESL 515 (595)
Q Consensus 445 vmDm~~~~g~faa~l~~~~--vwvmnv~p~~~~-~~l~~i~eRGl-ig-~~~~wce~f~typ---rtyDl~H~~~~-~s~ 515 (595)
|||+|||.|.+..+|.+.= --...+.-.|-. +.|..+.++.- .| -.+--|.-+...| .+||+|=+.++ +.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999886530 111345555644 67777666662 11 1111122222222 69999999777 554
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCc
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEG 543 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G 543 (595)
- +.=.++.+|=+|=|+|||||
T Consensus 81 -~------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 -L------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -S------SHHHHHHHHHHHHHTEEEEE
T ss_pred -C------CHHHHHHHHHHHHHHhCCCC
Confidence 3 45567789999999999998
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.11 Score=47.63 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=33.9
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
++||+|||.|.++..++..+.. ..+.++|.++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~-~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAE-GRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCC-CEEEEEecCHHHHHHHHHH
Confidence 5899999999999999887543 3788889999998877665
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.34 Score=51.92 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred ceEEEECCC-CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 202 RTALDMGCG-VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..|+=+|+| .|..+..+++. ....++.+|.+++-.+.|++-|....+...+.....--.+.||+|+..-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka--~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~------- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKA--MGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG------- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHH--cCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-------
Confidence 377777777 45888888875 22588889999999999999987655443322222211234999986643
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
...+....+.||+||.+++.+.+
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578889999999999999864
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.52 Score=48.41 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=72.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
+.+|+|||||.=-++........ ...+.+.|++..++++...- +.+..+...|...-+ +....|+++..-++ |
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~l-p 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKTL-P 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET-H-H
T ss_pred CchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHHH-H
Confidence 56999999999999988776633 34899999999999876543 667777776654443 45779999988777 4
Q ss_pred cccCH--HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh-----HHHHHHHHHHcCcEEE
Q 007645 277 FTAYN--ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE-----WADLQAVARALCYELI 329 (595)
Q Consensus 277 ~~~d~--~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~-----w~~l~~la~~~~w~~v 329 (595)
..+.. +..+ ++...++ .=.+++|-|-..-..+... -..++.++..-+|..-
T Consensus 183 ~le~q~~g~g~-~ll~~~~-~~~~vVSfPtrSL~gR~~gm~~~y~~~fe~~~~~~~~~~~ 240 (251)
T PF07091_consen 183 CLERQRRGAGL-ELLDALR-SPHVVVSFPTRSLGGRNKGMEQTYSAWFEALAAERGWIVD 240 (251)
T ss_dssp HHHHHSTTHHH-HHHHHSC-ESEEEEEEES-------TTHHHCHHHHHHHHCCTTCEEEE
T ss_pred HHHHHhcchHH-HHHHHhC-CCeEEEeccccccccCccccccCHHHHHHHhcccCCceee
Confidence 33221 2223 3333332 3356667663333333322 2236667666677643
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.098 Score=58.27 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~ 256 (595)
+..+...+.+.+.+..++ .+||+-||||.++..+++. +..+.|+++++..++.|+.+ |+ ++.|+++.++
T Consensus 368 aevLys~i~e~~~l~~~k--~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADK--TLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred HHHHHHHHHHHhCCCCCc--EEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 344455666777766665 8999999999999999886 34678889999999988765 44 4677776443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.68 Score=50.66 Aligned_cols=131 Identities=21% Similarity=0.254 Sum_probs=78.9
Q ss_pred cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCC---CCCCceeEE
Q 007645 197 TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLP---FPAFSFDIV 268 (595)
Q Consensus 197 ~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LP---fpd~sFDlV 268 (595)
.+..+.+|||+.+..|.=+.+++..-.....|.+.|.+.+.+....++ |.. ......|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 344455999999999955555554422223566789888777655443 665 344455665554 554 89999
Q ss_pred E----EcC--CCcc-----ccc----------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc-Cc
Q 007645 269 H----CSR--CLIP-----FTA----------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL-CY 326 (595)
Q Consensus 269 ~----~s~--vL~h-----~~~----------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~-~w 326 (595)
. |+. ++.- +.. -..++|..+...+++||+++.++-.+.-.+.+ ..+..++++. +.
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE---~vV~yaL~K~p~~ 393 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENE---AVVDYALKKRPEV 393 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhH---HHHHHHHHhCCce
Confidence 8 444 2210 000 12367888889999999999998755444333 2344455544 55
Q ss_pred EEEEe
Q 007645 327 ELIAV 331 (595)
Q Consensus 327 ~~v~~ 331 (595)
+++-.
T Consensus 394 kL~p~ 398 (460)
T KOG1122|consen 394 KLVPT 398 (460)
T ss_pred Eeccc
Confidence 55433
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.077 Score=58.83 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=55.3
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhh----ccchh---hhcccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~~wce~f~typrtyDl~H~~~ 511 (595)
.+|+|||||.|+++.++.+. .- .|+-.|-. +.+..+-+ .|+-. +-.|..+....++.+||+|=++-
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~---~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTG---KVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 57999999999998877542 21 23333433 44444332 24311 12333332223457899985432
Q ss_pred ccccc----cCCCCC--CCCCCh-------hhhHHhhcccccCCcEEEEe
Q 007645 512 IESLI----KNPGSN--KNSCSL-------VDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~----~~~~~~--~~~c~~-------~~~llEmdRiLRP~G~~i~r 548 (595)
-.|.. +.|... .+.-.+ ..+|-+.=|+|||||.+|++
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 11110 111110 011111 25788899999999999986
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.14 Score=52.86 Aligned_cols=90 Identities=19% Similarity=0.426 Sum_probs=61.5
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCch-hHHhhccc--hhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTL-SVIYDRGL--IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l-~~i~eRGl--ig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
+..++||+|||-|+--+.|.. ..=+|.-++..-+. .---+||+ +.+. ||-+. +..||+|-|-++.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~---~f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL---- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAP---LFKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL---- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHh---hcceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh----
Confidence 577899999999998888743 11224444433222 23456885 4333 36532 4679999977665
Q ss_pred CCCCCCCCCChh-hhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLV-DLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~-~~llEmdRiLRP~G~~i~r 548 (595)
+||.-. .+|-+|-+-|+|+|.+|+.
T Consensus 162 ------DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 ------DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ------hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 578755 6788999999999999985
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.074 Score=56.61 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=59.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHH----hhccchhhhcccCCCCCCCC---CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLIGVYHDWCEPFSTYP---RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGlig~~~~wce~f~typ---rtyDl~H~~~~~s 514 (595)
..|||.+||.|+|+..+.... .+|+=.|-. ..+..+ -.-|+-. ++--+..+...| .+||+|=++--|.
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence 379999999999954432221 123333432 223221 1124433 111111122222 6899988764433
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCc
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW 566 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W 566 (595)
.-..............+|-|+-|+|+|||++++--... ..++++++.--|
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 21100000011234689999999999999887653221 134455666555
|
This family is found exclusively in the Archaea. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.083 Score=53.73 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=65.9
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccch-hhhcccCCCCCC----CC-CccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEPFST----YP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~wce~f~t----yp-rtyDl~H~~~~~s~~ 516 (595)
.|||+|||-|.++-.|.... -||.-.|.. ..+.++-.+.+. |+.-||- ++.+ -. -+||.|=|..+..|+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred eEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 49999999999999997766 577777766 677776544432 1221211 1111 11 478888888888877
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. +.+.+|.+..+.|||||.+.++.
T Consensus 138 ~---------dp~~~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 138 P---------DPESFLRACAKLVKPGGILFLST 161 (243)
T ss_pred C---------CHHHHHHHHHHHcCCCcEEEEec
Confidence 4 45569999999999999999984
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.47 Score=50.05 Aligned_cols=108 Identities=16% Similarity=0.208 Sum_probs=52.0
Q ss_pred CeeecCCCCCc-ccccHHHHHHHHHhhccccCCC---cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 168 PYFTFPGGGTM-FADGADKYIDKLKQYIPITGGT---LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 168 ~~~~fp~~g~~-F~~~a~~yi~~L~~~l~~~~g~---~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
+.|.+|.+.-- --.+...|+..|.+++...... ..++||||+|....-..|..+ ....++.+.|+++..++.|++
T Consensus 66 ~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-~~~W~fvaTdID~~sl~~A~~ 144 (299)
T PF05971_consen 66 DVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-LYGWSFVATDIDPKSLESARE 144 (299)
T ss_dssp ------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-HH--EEEEEES-HHHHHHHHH
T ss_pred ccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-hcCCeEEEecCCHHHHHHHHH
Confidence 34667755411 1123456777777777643322 458999999988665555443 235689999999999999986
Q ss_pred c-----CCC--eEEEEcccc-----cCCCCCCceeEEEEcCCCcc
Q 007645 244 R-----GIP--AFVAMLGTR-----RLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 244 r-----g~~--~~~~~~d~~-----~LPfpd~sFDlV~~s~vL~h 276 (595)
. ++. +.+...... .+-.++..||+..|+--|+.
T Consensus 145 nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 145 NVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp HHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred HHHhccccccceEEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 4 232 444332211 12233468999999987744
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.16 Score=56.16 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=58.6
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHh---hc-cchhhh--cccCCCC--CC--CCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY---DR-GLIGVY--HDWCEPF--ST--YPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~---eR-Glig~~--~~wce~f--~t--yprtyDl~H~~ 510 (595)
.+|+||+||.||++.++... + .-.|+-.|-. +.|..+- +| |+-..+ .+ ...+ .. -+.+||.|-.+
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec-cccccccccccccccCEEEEc
Confidence 58999999999999887542 1 0123333433 4444332 22 431011 11 1111 11 13689999854
Q ss_pred Ccccc---c-cCCCCCC--CCCC-------hhhhHHhhcccccCCcEEEEe-------CChHHHHHH
Q 007645 511 GIESL---I-KNPGSNK--NSCS-------LVDLMVEMDRMLRPEGTVVVR-------DSPEVIDKV 557 (595)
Q Consensus 511 ~~~s~---~-~~~~~~~--~~c~-------~~~~llEmdRiLRP~G~~i~r-------d~~~~~~~~ 557 (595)
--.|. + +.|...- ..-. -..+|-++=|+|||||.++++ ++.+++.+.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~ 383 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAF 383 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHH
Confidence 22221 1 1010000 0000 136899999999999999997 555555544
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.24 Score=42.51 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=56.1
Q ss_pred EEecccchhH--HHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-------chhhhcccCCCCCCCC--CccchhhccCc
Q 007645 445 IMDMNAFFGG--FAAALTSDPVWVMNVVPARKS-STLSVIYDRG-------LIGVYHDWCEPFSTYP--RTYDLIHVSGI 512 (595)
Q Consensus 445 vmDm~~~~g~--faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-------lig~~~~wce~f~typ--rtyDl~H~~~~ 512 (595)
++|+|||.|. +.+.+......+.. .+.. ..+...-.+. +-....+.....-.++ .+||++ +...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL 127 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence 9999999998 66666665433333 2222 2222211111 1122333332111222 389999 7666
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
...+. . ...++-|+-|+|+|+|.+++.+..
T Consensus 128 ~~~~~------~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 128 VLHLL------P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred ehhcC------C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 66553 2 788999999999999999997543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.9 Score=47.89 Aligned_cols=107 Identities=15% Similarity=0.259 Sum_probs=59.3
Q ss_pred eEEecccchhHHHhhhcCCC---eEEEEeccCCCC--CchhHHhhccchh--hhcccCCCCCCCCCccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS--STLSVIYDRGLIG--VYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~---vwvmnv~p~~~~--~~l~~i~eRGlig--~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
+|+|.|||+|=.++.|.+.. -++|-=+-..+- .+.. +-+-|+-+ ++++ .-|+-=...||+|=++--|-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~N-l~~N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh~- 236 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKN-LAANGVENTEVWAS--NLYEPVEGKFDLIISNPPFHA- 236 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHh-HHHcCCCccEEEEe--cccccccccccEEEeCCCccC-
Confidence 99999999999999996554 456632221110 1111 12223333 2221 223333358999876666652
Q ss_pred cCCCCCCCCCCh----hhhHHhhcccccCCcEEEE--eCChHHHHHHHHhH
Q 007645 517 KNPGSNKNSCSL----VDLMVEMDRMLRPEGTVVV--RDSPEVIDKVSRIA 561 (595)
Q Consensus 517 ~~~~~~~~~c~~----~~~llEmdRiLRP~G~~i~--rd~~~~~~~~~~~~ 561 (595)
.+--. ..++-+-=+-|++||-+.| ......-.+++++-
T Consensus 237 -------G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~F 280 (300)
T COG2813 237 -------GKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELF 280 (300)
T ss_pred -------CcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhc
Confidence 11111 1477777889999997665 44444445555543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.33 Score=49.82 Aligned_cols=131 Identities=15% Similarity=0.218 Sum_probs=83.3
Q ss_pred CCCCeeeEEecccchhHHHhhhcCC-C-eEEE--EeccCCCC-CchhH----Hhhcc--chhhhcccCCCCCCCCCccch
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSD-P-VWVM--NVVPARKS-STLSV----IYDRG--LIGVYHDWCEPFSTYPRTYDL 506 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~-~-vwvm--nv~p~~~~-~~l~~----i~eRG--lig~~~~wce~f~typrtyDl 506 (595)
.......|+|+|||.|.-+=+|..+ + +=+. =.-+.... .+-.+ .-||- +=+=+.+|+.++.. .+||+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~ 118 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDL 118 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCE
Confidence 3344889999999999777666554 2 2221 11111110 11111 22332 22344556666554 57999
Q ss_pred hhccCcccccc---------CCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEE
Q 007645 507 IHVSGIESLIK---------NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 507 ~H~~~~~s~~~---------~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~ 570 (595)
|=|+--|=.-- ..+.....|++++++-=--++|+|+|++.+=-.++.+.++-.++++++|....
T Consensus 119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 88775542110 11113355888899998999999999999988889999999999999998654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.23 Score=51.04 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=66.3
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEE------EEeccCC-CCCchhHHhhccchhhhc-c----c-C---CCCCCC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWV------MNVVPAR-KSSTLSVIYDRGLIGVYH-D----W-C---EPFSTY 500 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwv------mnv~p~~-~~~~l~~i~eRGlig~~~-~----w-c---e~f~ty 500 (595)
++.+.-=++|||.+|+|--|=.+++ -|=. =+|.-.| .+++|.+.-.|-.=+-|- + | | |.++ |
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~-~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-F 173 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILR-HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-F 173 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHH-hhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-C
Confidence 3444457899999999966555432 2211 2333334 348888876665322121 1 2 2 3455 5
Q ss_pred C-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHH-HHHHHhH
Q 007645 501 P-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI-DKVSRIA 561 (595)
Q Consensus 501 p-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~-~~~~~~~ 561 (595)
| .+||+.--+.-.-.+ =.++..|-|+-|+|+|||-|-+=+-..+- +.++.+.
T Consensus 174 dd~s~D~yTiafGIRN~---------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy 227 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNV---------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY 227 (296)
T ss_pred CCCcceeEEEecceecC---------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence 5 899986533222211 23678999999999999998876554443 3344443
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.21 Score=50.30 Aligned_cols=95 Identities=9% Similarity=-0.003 Sum_probs=57.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-Cchh-HHhhccchhhh--------------cccCCCCCCC---C-C
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLS-VIYDRGLIGVY--------------HDWCEPFSTY---P-R 502 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~-~i~eRGlig~~--------------~~wce~f~ty---p-r 502 (595)
..|||.|||.|--|..|.++.. +|+-+|-. .-+. ++-++|+.... +-+|.-|-.+ + .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 3899999999999999987643 44444433 2233 24467764322 1122222221 1 3
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+||+|-...+|.+. ....-..++-.|-++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l-------~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIAL-------PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhC-------CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 66777655555543 222334789999999999996443
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.25 Score=52.13 Aligned_cols=134 Identities=16% Similarity=0.273 Sum_probs=79.3
Q ss_pred CCCCCCcccCCCCccccccccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCC-eEEEE
Q 007645 390 TIPKWPQRLTKAPSRALVMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMN 468 (595)
Q Consensus 390 ~~~~wp~rl~~~p~~~~~~~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmn 468 (595)
.+.||=+ -|..+.-+-+..|+ .+| -+|.+-..+ +..=+=|.|+|+|||-|-|.=.|.... -.|.-
T Consensus 78 ~l~PWRK----GPf~l~gi~IDtEW-rSd-~KW~rl~p~--------l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViG 143 (315)
T PF08003_consen 78 ALMPWRK----GPFSLFGIHIDTEW-RSD-WKWDRLLPH--------LPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIG 143 (315)
T ss_pred hhCCccc----CCcccCCEeecccc-ccc-chHHHHHhh--------hCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEE
Confidence 4666633 24444333345444 222 455554444 322233799999999999997775543 35555
Q ss_pred eccCCCCCchhHHhhccchhhhc-ccC-----CCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCC
Q 007645 469 VVPARKSSTLSVIYDRGLIGVYH-DWC-----EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPE 542 (595)
Q Consensus 469 v~p~~~~~~l~~i~eRGlig~~~-~wc-----e~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~ 542 (595)
+=|..- -.+|+-+=+-++|.-. -.. |..+. ..+||+|=|.|++= ||=+-.+.|.++=..||||
T Consensus 144 iDP~~l-f~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLY---------Hrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 144 IDPSPL-FYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLY---------HRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred ECCChH-HHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehh---------ccCCHHHHHHHHHHhhCCC
Confidence 555433 2334333334443210 011 22343 58999999888875 4455567889999999999
Q ss_pred cEEEEe
Q 007645 543 GTVVVR 548 (595)
Q Consensus 543 G~~i~r 548 (595)
|-+|+-
T Consensus 213 GeLvLE 218 (315)
T PF08003_consen 213 GELVLE 218 (315)
T ss_pred CEEEEE
Confidence 999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.45 Score=49.73 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=56.4
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccchhh--------------hcccCCCCCCC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGV--------------YHDWCEPFSTY 500 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~--------------~~~wce~f~ty 500 (595)
+....-++|||+|||.|+.+..+++. ++- +|+-++-. ..+.++-+ .+.- ..|--+-..+-
T Consensus 72 ~~~~~p~~VL~iG~G~G~~~~~~l~~~~~~--~V~~VEid~~vv~~a~~--~~~~~~~~~~~d~rv~v~~~Da~~~l~~~ 147 (283)
T PRK00811 72 FAHPNPKRVLIIGGGDGGTLREVLKHPSVE--KITLVEIDERVVEVCRK--YLPEIAGGAYDDPRVELVIGDGIKFVAET 147 (283)
T ss_pred hhCCCCCEEEEEecCchHHHHHHHcCCCCC--EEEEEeCCHHHHHHHHH--HhHHhccccccCCceEEEECchHHHHhhC
Confidence 33345689999999999999988776 443 23333322 33333322 1111 11111111222
Q ss_pred CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 501 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 501 prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.+||+|=++. +.++. ....---..++-++-|+|+|||.+++.
T Consensus 148 ~~~yDvIi~D~-~dp~~----~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 148 ENSFDVIIVDS-TDPVG----PAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCcccEEEECC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 47899986432 22221 111111245677889999999999986
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.37 Score=51.63 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=37.5
Q ss_pred cCCCcceEEEECCCCcHHHHHHhhc------------C---CceEEEEeecCcH---HHHHHH-------HHcCCCeEEE
Q 007645 197 TGGTLRTALDMGCGVASFGGSMLSE------------N---ILTLSFAPRDSHK---AQIQFA-------LERGIPAFVA 251 (595)
Q Consensus 197 ~~g~~r~VLDIGCGtG~~a~~La~~------------g---v~~~~v~~vD~s~---~~l~~A-------~erg~~~~~~ 251 (595)
..++.-+|+|+||..|..+..+.+. + .....+.-.|.-. +.+-.. .... +..|.
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~-~~~f~ 91 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF-RNYFV 91 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT-TSEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC-ceEEE
Confidence 3445668999999999777665543 0 1123444444221 111110 1112 22232
Q ss_pred E---cccccCCCCCCceeEEEEcCCCcccc
Q 007645 252 M---LGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 252 ~---~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
. +....-=||+++.|++||+.+| ||.
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred EecCchhhhccCCCCceEEEEEechh-hhc
Confidence 2 2233334889999999999999 765
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.52 Score=47.72 Aligned_cols=83 Identities=12% Similarity=0.201 Sum_probs=50.1
Q ss_pred EEEcccccC--CCCCCceeEEEEcCCCc----c-----cc-----cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 250 VAMLGTRRL--PFPAFSFDIVHCSRCLI----P-----FT-----AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 250 ~~~~d~~~L--Pfpd~sFDlV~~s~vL~----h-----~~-----~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
+..+|+.++ .++++++|+|++.--.. . +. +-....+.|+.|+|||||.+++... |. .
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~---~~----~ 76 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYG---WN----R 76 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEec---cc----c
Confidence 344454332 46788888888863221 0 00 0123678999999999999987532 21 1
Q ss_pred HHHHHHHHHHcCcEEEEeecceeEeeccCC
Q 007645 314 WADLQAVARALCYELIAVDGNTVIWKKPVG 343 (595)
Q Consensus 314 w~~l~~la~~~~w~~v~~~~~~~iw~K~~~ 343 (595)
...+...+++.+|.+. +..||.|+..
T Consensus 77 ~~~~~~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 77 VDRFMAAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred HHHHHHHHHHCCCEEe----eEEEEECCCC
Confidence 2234556677788754 3457998643
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.22 Score=50.55 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=61.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-------cchhh-hcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-------GLIGV-YHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-------Glig~-~~~wce~f~typrtyDl~H~~~~~ 513 (595)
++|||+|||.|+|.-.|....+ =.|+-.|.. ++|.--+.. +..-+ +-+|-+-. .|++-++-.|
T Consensus 77 ~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~------~d~~~~Dvsf 148 (228)
T TIGR00478 77 KIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIF------PDFATFDVSF 148 (228)
T ss_pred CEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcC------CCceeeeEEE
Confidence 5899999999999999987643 223334433 444431211 11111 22344332 2444444334
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEE-------------------eCCh---HHHHHHHHhHhccCceeEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV-------------------RDSP---EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~-------------------rd~~---~~~~~~~~~~~~~~W~~~~~ 571 (595)
. ++.-+|-.|.+.|+| |.+|+ +|.. .+++++...+..+-|++.-.
T Consensus 149 i------------S~~~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 149 I------------SLISILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred e------------ehHhHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 3 222367778888888 77664 3432 55777777778888876543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=91.29 E-value=3.4 Score=42.97 Aligned_cols=127 Identities=12% Similarity=0.074 Sum_probs=77.8
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC--CCceeEEEEcCCCcccc--
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP--AFSFDIVHCSRCLIPFT-- 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp--d~sFDlV~~s~vL~h~~-- 278 (595)
+++|+-||.|.+...+.+.|.. .+..+|+++.+++..+.+.... +...|+..+... ...+|+++...-=..+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 6899999999999999888754 4677899999998887775443 445565555322 35699999854221111
Q ss_pred ------cCH-HHHHHHHHhh---cCCCcEEEEEcC-CCCCC-CCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 279 ------AYN-ATYLIEVDRL---LRPGGYLVISGP-PVQWP-KQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 279 ------~d~-~~~L~Ei~Rv---LRPGG~lvls~p-~~~~~-~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
++. ..++.++.|+ ++|. +++.+. +.... .....+..+.+.+++++|......-+
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~ 144 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLN 144 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEE
Confidence 122 2344444444 4666 333332 22111 12334777778888889887655433
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.18 Score=50.60 Aligned_cols=95 Identities=11% Similarity=0.023 Sum_probs=52.0
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhhccchhhh--------------cccCCCCCCCC----C
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDRGLIGVY--------------HDWCEPFSTYP----R 502 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~eRGlig~~--------------~~wce~f~typ----r 502 (595)
..|||.|||.|-.|.+|.++ .|.-+=++|.--. .+.-+.|+.... .-+|.-|-.++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE---QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH---HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 58999999999999999776 4555555554111 112233332111 11222222222 2
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+||+|=...+|.+. ....-..++-.|-|.|||||.+++
T Consensus 113 ~fD~i~D~~~~~~l-------~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIAL-------PEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccC-------CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 45555444444332 122234578889999999997444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.4 Score=47.52 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=66.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCce---EEEEeecCcHHHHHHH---HHcCC--CeEEEEcccccCC---------CCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILT---LSFAPRDSHKAQIQFA---LERGI--PAFVAMLGTRRLP---------FPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~---~~v~~vD~s~~~l~~A---~erg~--~~~~~~~d~~~LP---------fpd~ 263 (595)
..+|||+.+..|+=++.|++..... --+++.|.+...+..- ..+-. ...+...++...| ....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 4499999999999999888873321 1467788887655433 23322 1222222222222 2334
Q ss_pred ceeEEEEcC-C-----Cc-------c-ccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 264 SFDIVHCSR-C-----LI-------P-FTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 264 sFDlV~~s~-v-----L~-------h-~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
.||-|.|-- | +. . |.. -.-.+|..-.++||+||.++.|+-..+-..++
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE 305 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE 305 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence 699999710 0 00 0 110 11267888999999999999998754444333
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.1 Score=45.71 Aligned_cols=111 Identities=17% Similarity=0.194 Sum_probs=67.9
Q ss_pred ccCCeeecCCCCC-cccccHHHHHHHHHhhccccC----CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH
Q 007645 165 ESGPYFTFPGGGT-MFADGADKYIDKLKQYIPITG----GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ 239 (595)
Q Consensus 165 ~e~~~~~fp~~g~-~F~~~a~~yi~~L~~~l~~~~----g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~ 239 (595)
+.-.+|.+|.+.- ---.+...|+..|.+++.... ++.-++||||.|.-..--.+--+ -.+.+++|.|++...++
T Consensus 38 Y~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~ 116 (292)
T COG3129 38 YAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLS 116 (292)
T ss_pred cceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccce-eecceeecCccCHHHHH
Confidence 3445799988751 122455678888888876443 34568999998866543333222 23558899999999888
Q ss_pred HHHHc-----CCC--eEEEEcccccCCC-----CCCceeEEEEcCCCcc
Q 007645 240 FALER-----GIP--AFVAMLGTRRLPF-----PAFSFDIVHCSRCLIP 276 (595)
Q Consensus 240 ~A~er-----g~~--~~~~~~d~~~LPf-----pd~sFDlV~~s~vL~h 276 (595)
.|+.. ++. +.+....-.+--| .++.||++.|+--|+.
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence 88654 222 2222211111112 2578999999987743
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.2 Score=43.93 Aligned_cols=100 Identities=19% Similarity=0.145 Sum_probs=55.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEc-ccccC--------CCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAML-GTRRL--------PFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~-d~~~L--------Pfpd~sFDlV~~s 271 (595)
..+|||+||..|+|+.-..++--+..-+.++|+-. ...-.| +.+..+ |..+- ..|+...|+|++-
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~G--a~~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSD 143 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEG--ATIIQGNDVTDPETYRKIFEALPNRPVDVVLSD 143 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCC--cccccccccCCHHHHHHHHHhCCCCcccEEEec
Confidence 34999999999999988777732223455666521 111112 222222 22110 1367889999874
Q ss_pred CCCcccc----cCHH-------HHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 272 RCLIPFT----AYNA-------TYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 272 ~vL~h~~----~d~~-------~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
..- .-. .|.. .+|.-....++|+|.|+.-. |...+
T Consensus 144 Map-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~----w~g~e 189 (232)
T KOG4589|consen 144 MAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL----WDGSE 189 (232)
T ss_pred cCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE----ecCCc
Confidence 321 111 0111 33444556678999999875 55444
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.16 Score=49.05 Aligned_cols=107 Identities=22% Similarity=0.324 Sum_probs=58.2
Q ss_pred CeeeEEecccchh--HHHhhhcCCCeEEEEeccCCCCCchh---HHhhc------c-chhhhcccCCCCC--C-CCCccc
Q 007645 441 AIRNIMDMNAFFG--GFAAALTSDPVWVMNVVPARKSSTLS---VIYDR------G-LIGVYHDWCEPFS--T-YPRTYD 505 (595)
Q Consensus 441 ~~RnvmDm~~~~g--~faa~l~~~~vwvmnv~p~~~~~~l~---~i~eR------G-lig~~~~wce~f~--t-yprtyD 505 (595)
+-++||+.|||.| |.++|... ....|+-+|.+..++ .-.++ + +--.-.||.+... . -++.||
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~---~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF---GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred CCceEEEECCccchhHHHHHhcc---CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 3469999999877 88888771 122334444443332 22222 1 2344568988641 1 247899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC------ChHHHHHHHH
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSR 559 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd------~~~~~~~~~~ 559 (595)
+|-|+.|+=. .-..+.++-=++++|.|+|-+++.. ...+++++++
T Consensus 122 ~IlasDv~Y~---------~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 122 VILASDVLYD---------EELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp EEEEES--S----------GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred EEEEecccch---------HHHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 9999998752 2345667777899999999988742 2345665554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.6 Score=48.28 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=54.4
Q ss_pred CCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhccchhhh-------------cccCCCCCCCCCc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLIGVY-------------HDWCEPFSTYPRT 503 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig~~-------------~~wce~f~typrt 503 (595)
..+-++||++|||.|+++..+.+.+ + .+|+-++-. +.+..+-+. +..+ .|-.+-....+++
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~--~~v~~veid~~vi~~a~~~--~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~ 145 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSV--EKATLVDIDEKVIELSKKF--LPSLAGSYDDPRVDLQIDDGFKFLADTENT 145 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCc--ceEEEEeCCHHHHHHHHHH--hHhhcccccCCceEEEECchHHHHHhCCCC
Confidence 3445699999999999998887654 3 223333322 222222211 1111 1111111123689
Q ss_pred cchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 504 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 504 yDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
||+|=.+.... +. ....--....+-.+-|+|+|||.+++.
T Consensus 146 yDvIi~D~~~~-~~----~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 146 FDVIIVDSTDP-VG----PAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred ccEEEEeCCCC-CC----cccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99986543211 11 011111245666788999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.63 Score=48.81 Aligned_cols=101 Identities=13% Similarity=0.136 Sum_probs=70.1
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEcccccC--CCCCCceeEE
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTRRL--PFPAFSFDIV 268 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~~~L--Pfpd~sFDlV 268 (595)
..++||-||-|.|.+......+ -.+-++.-+|+.++.++..++- +..+.+..+|...+ -...+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 3568999999999999988877 3344667778888888777654 34466666663222 2346899999
Q ss_pred EEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 269 HCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 269 ~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.-..= ...+ ....+...+.+.||+||+++..+
T Consensus 200 i~dssd-pvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSSD-PVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecCC-ccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 863211 1111 12367788999999999999976
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.68 Score=48.83 Aligned_cols=139 Identities=8% Similarity=0.084 Sum_probs=74.8
Q ss_pred CeeeEEecccchhHHHhhhcC----CCeEEEEeccCCCCCch-hHHh--hccchh-hhcccCCCCCCCC--Cccchhhcc
Q 007645 441 AIRNIMDMNAFFGGFAAALTS----DPVWVMNVVPARKSSTL-SVIY--DRGLIG-VYHDWCEPFSTYP--RTYDLIHVS 510 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~----~~vwvmnv~p~~~~~~l-~~i~--eRGlig-~~~~wce~f~typ--rtyDl~H~~ 510 (595)
.-+.|+|+|||-|++.|.+.- ...-+-|+=.....+.+ .-.+ +.||=. +-.-...+....+ ..||+|=+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 568899999998877555432 22233333222111111 1111 234311 1111111122222 689999987
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh---HHHHHHHH--hHhccCceeEEeccCCCCCCCceEEE
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---EVIDKVSR--IANTVRWTAAVHDKEPGSNGREKILV 585 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~---~~~~~~~~--~~~~~~W~~~~~~~~~~~~~~~~~l~ 585 (595)
....+ ++-.-..+|-.+=|.|||||++++|--. .++-.+-. ..+ -|+....-|-.++ .-+-++|
T Consensus 203 -ALi~~-------dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~-v~Nsvi~ 271 (296)
T PLN03075 203 -ALVGM-------DKEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDE-VINSVII 271 (296)
T ss_pred -ccccc-------ccccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCC-ceeeEEE
Confidence 55444 2234467899999999999999999421 11111100 112 7887666554333 5678899
Q ss_pred EEecc
Q 007645 586 ATKSL 590 (595)
Q Consensus 586 ~~K~~ 590 (595)
++|.-
T Consensus 272 ~r~~~ 276 (296)
T PLN03075 272 ARKPG 276 (296)
T ss_pred EEeec
Confidence 99964
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.64 Score=45.86 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=63.5
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
++.|+|+|+|.++...++. +-.+.+++.++.....|.++ | .+..++..|+....| ...|+|+|-..=.-+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred ceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHHh
Confidence 7999999999877665554 23566677888888888877 2 346788888888877 457999984311111
Q ss_pred c-cCHHHHHHHHHhhcCCCcEEE
Q 007645 278 T-AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 278 ~-~d~~~~L~Ei~RvLRPGG~lv 299 (595)
. +....++..+...||-.+.++
T Consensus 110 i~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccc
Confidence 1 222366777777888888775
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.43 Score=52.77 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=55.1
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh---hc-cc-hh-hhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY---DR-GL-IG-VYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~---eR-Gl-ig-~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
..|||+|||.|+++.+|...-- --.|+-.|.. ..+..+- +| |+ +- +.+|-.+....++ .+||+|=++--+|
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs 324 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPCS 324 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCCC
Confidence 4799999999999988754310 0123334433 4444332 22 32 11 1223332212233 6899987544332
Q ss_pred c----ccCCCCCCCCC---------ChhhhHHhhcccccCCcEEEEe
Q 007645 515 L----IKNPGSNKNSC---------SLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~----~~~~~~~~~~c---------~~~~~llEmdRiLRP~G~~i~r 548 (595)
. -+.|...-.+- ....+|-+.=++|+|||.++++
T Consensus 325 ~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvys 371 (427)
T PRK10901 325 ATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYA 371 (427)
T ss_pred cccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 11111100011 1136788999999999999986
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.29 Score=50.50 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=52.6
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhh---c-cc--hhhh-cccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYD---R-GL--IGVY-HDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~e---R-Gl--ig~~-~~wce~f~typrtyDl~H~~~ 511 (595)
..|+||+||.|+++.+|.. ..- .|+-.|.. .-+..+-+ | |+ +-++ +|- ..++.....||.|=.+-
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g---~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEG---AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDA 148 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCC---EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcC
Confidence 4699999999999876633 111 24444544 44443322 2 33 1111 121 11222224588886543
Q ss_pred cccc----ccCCCCCCCCC--C-------hhhhHHhhcccccCCcEEEEe
Q 007645 512 IESL----IKNPGSNKNSC--S-------LVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~----~~~~~~~~~~c--~-------~~~~llEmdRiLRP~G~~i~r 548 (595)
-.|. -++|...-.+- . -..||-++=++|||||.++++
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2221 11111100000 1 125888899999999999997
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=89.70 E-value=6.8 Score=42.69 Aligned_cols=118 Identities=17% Similarity=0.137 Sum_probs=74.0
Q ss_pred HHHhhccccCCCcceEEEECCCCc----HHHHHHhhc--CCceEEEEeecC----cHHHHH--------HHHHcCCCeEE
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVA----SFGGSMLSE--NILTLSFAPRDS----HKAQIQ--------FALERGIPAFV 250 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG----~~a~~La~~--gv~~~~v~~vD~----s~~~l~--------~A~erg~~~~~ 250 (595)
.|.+.+... +.-.|+|+|.|.| ++...|+.+ +.+.+.+++++. +...++ +|+..|++.+|
T Consensus 101 aIleA~~g~--~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 101 AILEAFEGE--RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHhccC--cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 344444433 2347999999999 455556655 567889999988 555554 45555888877
Q ss_pred EEcc---ccc-----CCCCCCceeEEEEcCCCcccccC------HHHHHHHHHhhcCCCcEEEEEcCCCCCCC
Q 007645 251 AMLG---TRR-----LPFPAFSFDIVHCSRCLIPFTAY------NATYLIEVDRLLRPGGYLVISGPPVQWPK 309 (595)
Q Consensus 251 ~~~d---~~~-----LPfpd~sFDlV~~s~vL~h~~~d------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~ 309 (595)
...- .+. +...++..=+|.|.+.|+|+.++ +...+....|-|+|.- +++++...+...
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v-vv~~E~ea~~n~ 250 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV-VVLVEQEADHNS 250 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE-EEEEeecCCCCC
Confidence 6631 222 23344556667788888877622 3345667778889994 445555444433
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.8 Score=40.70 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=54.8
Q ss_pred EEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--CCCCceeEEEEcCCCccccc-C------H---HHHHHHHH
Q 007645 228 FAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--FPAFSFDIVHCSRCLIPFTA-Y------N---ATYLIEVD 289 (595)
Q Consensus 228 v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~h~~~-d------~---~~~L~Ei~ 289 (595)
+.++|+.+.+++.++++ +. ++.+...+=+++. .+.+.+|+|+.+.. .++. | + -.++..+.
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~al 79 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAAL 79 (140)
T ss_dssp EEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHHH
Confidence 56789999999998876 32 3666665544443 23358999997643 3331 1 1 27789999
Q ss_pred hhcCCCcEEEEEcCCCCCCCCchh---HHHHHHHHHHc
Q 007645 290 RLLRPGGYLVISGPPVQWPKQDKE---WADLQAVARAL 324 (595)
Q Consensus 290 RvLRPGG~lvls~p~~~~~~~~~~---w~~l~~la~~~ 324 (595)
++|+|||.+.++. +..+... .+.+.+.++++
T Consensus 80 ~lL~~gG~i~iv~----Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 80 ELLKPGGIITIVV----YPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp HHEEEEEEEEEEE------STCHHHHHHHHHHHHHHTS
T ss_pred HhhccCCEEEEEE----eCCCCCCHHHHHHHHHHHHhC
Confidence 9999999999987 3444433 33455555543
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.85 E-value=3.5 Score=44.53 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=63.5
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc-----C-CC-CCCceeEEEEcC
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR-----L-PF-PAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~-----L-Pf-pd~sFDlV~~s~ 272 (595)
.+||.+|||. |..+..+++. +. ..+..++.++...+.+++.+. +.+......+ + .+ ..+.+|+|+-.-
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g~--~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLGA--ERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 4899999987 7888888776 32 246777888999999988732 2222111110 1 11 234689988642
Q ss_pred CC-------ccc-------ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CL-------IPF-------TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL-------~h~-------~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.- .+. ..+....+.++.+.|+++|.+++.+.
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 11 000 12345688999999999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=88.56 E-value=0.38 Score=48.82 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=24.3
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.+||+|-.+.--. ...+++-++=|.|||||.+|+
T Consensus 143 ~~fD~VfiDa~k~------------~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 143 PEFDFAFVDADKP------------NYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCCEEEECCCHH------------HHHHHHHHHHHhcCCCeEEEE
Confidence 5899987554322 233566677899999999996
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=88.27 E-value=2.2 Score=45.32 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCCCchhHHhh------ccc----hh-hhcccCCCCCCC-CCccc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKSSTLSVIYD------RGL----IG-VYHDWCEPFSTY-PRTYD 505 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~~~l~~i~e------RGl----ig-~~~~wce~f~ty-prtyD 505 (595)
...-++||++|+|.|+.+..+.+.| +..+=+|=.|. .-+.++-+ .|+ +- +..|=-+-.... .+.||
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~-~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDK-MVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCH-HHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence 3457899999999999999998764 43222222221 11111111 010 00 011100001223 36899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+|-.+. +.... ....-.-..++-.+-|.|+|||.++..
T Consensus 168 vIi~D~-~dp~~----~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDS-SDPVG----PAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcC-CCCCC----chhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 997543 22211 111111235677889999999999875
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=88.06 E-value=0.62 Score=51.77 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=52.3
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHh----hccch---hhhcccCCCCCCCCCccchhhcc-
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIY----DRGLI---GVYHDWCEPFSTYPRTYDLIHVS- 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~----eRGli---g~~~~wce~f~typrtyDl~H~~- 510 (595)
..|+|++||.|+++.+|.. ..- .|+-.|.. .-+..+- ..|+- -+.+|..+.. -+.+||.|=.+
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~---~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRG---QITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCc---EEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 5799999999998766543 111 23334433 3443322 23431 1122322211 12579988643
Q ss_pred ---CccccccCCCCCCCC--CCh-------hhhHHhhcccccCCcEEEEe
Q 007645 511 ---GIESLIKNPGSNKNS--CSL-------VDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 511 ---~~~s~~~~~~~~~~~--c~~-------~~~llEmdRiLRP~G~~i~r 548 (595)
+.-...+.|...-.. -.+ ..+|-++=|+|||||.+++.
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvys 376 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYA 376 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 221111111110011 111 25899999999999999997
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.1 Score=45.00 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHhhh----ccCCCCeeeEEecccchhHHHhhhcCCCe-EEEEeccCCCCC--c-------hhHHhhcc
Q 007645 420 RRWRRRVAYYKNTLNV----KLGTPAIRNIMDMNAFFGGFAAALTSDPV-WVMNVVPARKSS--T-------LSVIYDRG 485 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~----~~~~~~~RnvmDm~~~~g~faa~l~~~~v-wvmnv~p~~~~~--~-------l~~i~eRG 485 (595)
..+.+.++.|++.|=. .++...==-||.+|||.|.---.+-..|. =|-.+=|...-. + -..=++|=
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~f 130 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERF 130 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEE
Confidence 4556777777754321 12222223589999999976666655453 333444432100 0 11112222
Q ss_pred chhhhcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----HHHHHH
Q 007645 486 LIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----EVIDKV 557 (595)
Q Consensus 486 lig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----~~~~~~ 557 (595)
..|-- |.++--+ -+||.|=+.-+. |+--+....|-|+-|||||||-+|+=+++ ..|+++
T Consensus 131 vva~g----e~l~~l~d~s~DtVV~TlvL---------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i 194 (252)
T KOG4300|consen 131 VVADG----ENLPQLADGSYDTVVCTLVL---------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRI 194 (252)
T ss_pred Eeech----hcCcccccCCeeeEEEEEEE---------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHH
Confidence 22222 3344334 689988765443 23344557999999999999999996554 455554
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=87.85 E-value=3.9 Score=42.35 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=60.0
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc---C-CCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR---L-PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~---L-Pfpd~sFDlV~~s~vL~ 275 (595)
.+||..|+| .|..+..+++. |. .+...+.++...+.+++.+....+...+... + ....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~---~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGA---AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC---EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC--
Confidence 478888876 47777777775 43 4566688888888888777643222111000 0 123467999885421
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+.++.+.|+++|.++..+.
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEECC
Confidence 13468889999999999998753
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=87.72 E-value=0.31 Score=46.83 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=34.9
Q ss_pred CCceeEEEEcCCCcccc----c---CH---HHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFT----A---YN---ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~----~---d~---~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.++||.+.|..+++|.- . |+ ...+.++.++|||||.|+++.|
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 47899999999998864 1 11 3789999999999999999998
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.7 Score=45.84 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=62.5
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCC-CCchhHHhhc----cchhhhcccCCCCCCCC--CccchhhccCcc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDR----GLIGVYHDWCEPFSTYP--RTYDLIHVSGIE 513 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~-~~~l~~i~eR----Glig~~~~wce~f~typ--rtyDl~H~~~~~ 513 (595)
+=+||+|.|||.|=+|-|..+.-. --|+-.|- +-.+.++.|- |+--+.|.-+-.-.+-| +.||+|=|+=+=
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 359999999999987766544221 01222222 2334443331 11101111111123344 589998844321
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEec
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVHD 572 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~~ 572 (595)
.. +..+.=++-|.|+|||++|++.=. +-.+.|.+-..+--|++..+.
T Consensus 240 ~v------------l~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 240 EV------------LVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HH------------HHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 11 113444678999999999998422 114555665555577766553
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=87.51 E-value=1.7 Score=47.18 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-cch----h---------hhcccCCCCCCCCC
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLI----G---------VYHDWCEPFSTYPR 502 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gli----g---------~~~~wce~f~typr 502 (595)
...+-++||++|+|.|+.+..+++.+- +.+|+-++-. .-+.++-+. .|. | ++.|-.+-...-++
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~-v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYET-VLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCC-CCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 345568999999999998888877541 1233333322 333333321 110 0 11111111112246
Q ss_pred ccchhhccCccccccCCCCC-CCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 503 TYDLIHVSGIESLIKNPGSN-KNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~-~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.||+|=++- . +|... ..+-.-...+-.+-|+|+|||.++....
T Consensus 226 ~YDVIIvDl-~----DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDF-P----DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcC-C----CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 799987662 1 11111 1122224577889999999999988743
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.30 E-value=6.1 Score=40.74 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=64.6
Q ss_pred cceEEEECCCCcHHHHHHhhc----CCceEEEEeecCcHHHHHHHHHc------CCCeEEEEcc----cccCCCCCCcee
Q 007645 201 LRTALDMGCGVASFGGSMLSE----NILTLSFAPRDSHKAQIQFALER------GIPAFVAMLG----TRRLPFPAFSFD 266 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~----gv~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d----~~~LPfpd~sFD 266 (595)
..+.+|+|.|+..=++.|++. +. ...+.|+|+++..+....+. ++++.-.+++ ...+| ..+.-=
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~-~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP-RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc-CCCeEE
Confidence 348999999999777766554 44 35889999999887654322 3333333333 22233 112223
Q ss_pred EEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 267 IVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 267 lV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++....+..+.+ +...+|..+...|+||-+|++-+
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 3444555666653 33588999999999999999965
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.45 Score=45.25 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 495 EPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 495 e~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
+.++.-+.+||+|=+..++..+ -+....|-||-|+|+|||.+++-|-
T Consensus 36 ~~lp~~~~~fD~v~~~~~l~~~---------~d~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 36 IDLPFDDCEFDAVTMGYGLRNV---------VDRLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred hhCCCCCCCeeEEEecchhhcC---------CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 4444223799999776555443 2456789999999999999998753
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=87.03 E-value=2.7 Score=44.65 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
..++.+.+.+....+. .++|.=+|.|..+..++++-.. ..+.++|.++.+++.|+++
T Consensus 7 Vll~Evl~~L~~~~gg--iyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDG--IYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred hhHHHHHHhcCcCCCC--EEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHH
Confidence 3456666666655544 8999999999999999987323 5789999999999999876
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.99 E-value=5.7 Score=44.86 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d 254 (595)
...++.|.+++...... +|+|--||+|++.....+. ......+.|.+++......|+-+ +++ +.....+
T Consensus 172 ~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~d 249 (489)
T COG0286 172 REVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGD 249 (489)
T ss_pred HHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccc
Confidence 34456666666653333 8999999999877665443 11125789999999998888765 444 3444444
Q ss_pred cccCCC-----CCCceeEEEEcCCCc--cccc----------------------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPF-----PAFSFDIVHCSRCLI--PFTA----------------------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPf-----pd~sFDlV~~s~vL~--h~~~----------------------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..-|. ..+.||.|+++.-+. .|.. ..-.+++.+.+.|+|||+..++.|
T Consensus 250 tl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 250 TLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 433332 336799999966553 1211 113678999999999998887776
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=86.97 E-value=5.2 Score=37.31 Aligned_cols=42 Identities=14% Similarity=-0.057 Sum_probs=35.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
.++|+|||++.|..+.+++-+|.. .+.+++.++...+..++.
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een 70 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEV 70 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHH
Confidence 459999999999999999988754 677788899998888774
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.86 E-value=1.5 Score=45.66 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=35.3
Q ss_pred EEEEcccccC--CCCCCceeEEEEcCCCc----------ccc-----cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 249 FVAMLGTRRL--PFPAFSFDIVHCSRCLI----------PFT-----AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 249 ~~~~~d~~~L--Pfpd~sFDlV~~s~vL~----------h~~-----~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+..+|+... .+++++||+|++.--.. .+. +-....+.++.|+|||||.+++..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3455554432 35678899999854321 010 011368899999999999999874
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=86.52 E-value=2.4 Score=46.28 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=77.8
Q ss_pred eecCCCCCcccccHHHHHHHHHhhc-------cccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH
Q 007645 170 FTFPGGGTMFADGADKYIDKLKQYI-------PITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL 242 (595)
Q Consensus 170 ~~fp~~g~~F~~~a~~yi~~L~~~l-------~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~ 242 (595)
..++..+..|.+....+-++|.-.+ .......-++||.=+|+|.=+...+..-.....++..|+++++++..+
T Consensus 12 ~~~~~~~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~ 91 (377)
T PF02005_consen 12 ITIPKKAPVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIK 91 (377)
T ss_dssp SSTTTTSSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHH
T ss_pred eecCCCCCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHH
Confidence 3355666677766666644432222 222112348999999999777666655222357888999999999887
Q ss_pred Hc----CCC---eEEEEcccccCC-CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 243 ER----GIP---AFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 243 er----g~~---~~~~~~d~~~LP-fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++ ++. +.+...|+..+= ...+.||+|-.- ++. .+..+|..+.+.+|.||++.++..
T Consensus 92 ~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD----PfG-Sp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 92 RNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD----PFG-SPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------SS---HHHHHHHHHHEEEEEEEEEEE-
T ss_pred HhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC----CCC-CccHhHHHHHHHhhcCCEEEEecc
Confidence 66 443 355566654432 245789999743 333 567899999999999999999865
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=0.51 Score=50.39 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=16.6
Q ss_pred eeEEecccchhHHHhhhcC
Q 007645 443 RNIMDMNAFFGGFAAALTS 461 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~ 461 (595)
..|+|+|||.|.+++.|.+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 4799999999999988854
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=4.4 Score=42.81 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=58.6
Q ss_pred ceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEc--ccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAML--GTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~--d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+||=+||| .|.++..+++. |. ..+...|.++..++.+++.|....+... +...+....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G---- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG---- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC----
Confidence 488888876 34555566654 33 1456678889999999988764332111 11111111235898875421
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+..+.+.||+||.+++.+.
T Consensus 245 ---~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13467788999999999999874
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.1 Score=41.60 Aligned_cols=141 Identities=19% Similarity=0.248 Sum_probs=83.7
Q ss_pred hhhccCCCCeeeEEecccchhHHHhhhc-CCCeEEEEeccCCCC-Cchh----HHhhccchh----hhcccCCC------
Q 007645 433 LNVKLGTPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLS----VIYDRGLIG----VYHDWCEP------ 496 (595)
Q Consensus 433 l~~~~~~~~~RnvmDm~~~~g~faa~l~-~~~vwvmnv~p~~~~-~~l~----~i~eRGlig----~~~~wce~------ 496 (595)
|.+.+....- .||.+++|+|--|+++. ..|- +---|+|-. +.+. -|-+-|+.- +.-|-+.+
T Consensus 18 L~~~l~~~~~-~vLEiaSGtGqHa~~FA~~lP~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~ 94 (204)
T PF06080_consen 18 LKQYLPDSGT-RVLEIASGTGQHAVYFAQALPH--LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL 94 (204)
T ss_pred HHHHhCccCc-eEEEEcCCccHHHHHHHHHCCC--CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc
Confidence 4444443322 79999999998766662 2232 224577655 3323 244666522 22222222
Q ss_pred -CCCCCCccchhhccCcc--ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe------------------------C
Q 007645 497 -FSTYPRTYDLIHVSGIE--SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR------------------------D 549 (595)
Q Consensus 497 -f~typrtyDl~H~~~~~--s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r------------------------d 549 (595)
-.-++.+||.|=+..++ +.| -..+-++-+.-|+|+|||.+++- |
T Consensus 95 ~~~~~~~~~D~i~~~N~lHI~p~---------~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 95 PAPLSPESFDAIFCINMLHISPW---------SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred ccccCCCCcceeeehhHHHhcCH---------HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 22256899988776665 333 33467999999999999999972 1
Q ss_pred Ch---HHHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 550 SP---EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 550 ~~---~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
.. .-++.|.++|.+-..+.... + +-|. .+++||++|
T Consensus 166 p~~GiRD~e~v~~lA~~~GL~l~~~-~-~MPA-NN~~Lvfrk 204 (204)
T PF06080_consen 166 PEWGIRDIEDVEALAAAHGLELEED-I-DMPA-NNLLLVFRK 204 (204)
T ss_pred CCcCccCHHHHHHHHHHCCCccCcc-c-ccCC-CCeEEEEeC
Confidence 10 22567888888766654322 1 1232 478999987
|
The function of this family is unknown. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=84.78 E-value=0.81 Score=50.75 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=64.4
Q ss_pred hhhhhhhhHHHHHHHHHHH-hhhccCCCCeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----
Q 007645 414 VFEADSRRWRRRVAYYKNT-LNVKLGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR---- 484 (595)
Q Consensus 414 ~f~~d~~~w~~~v~~y~~~-l~~~~~~~~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR---- 484 (595)
.|++.--.+++..+..... +. +..+ .+|+||+||.||.+.++... .- .|+-.|-. +-|..+-++
T Consensus 213 ~~~~G~~~~Qd~~s~~~~~~l~--~~~g--~~VLD~cagpGgkt~~la~~~~~~g---~V~a~Dis~~rl~~~~~n~~r~ 285 (431)
T PRK14903 213 VIKDGLATVQGESSQIVPLLME--LEPG--LRVLDTCAAPGGKTTAIAELMKDQG---KILAVDISREKIQLVEKHAKRL 285 (431)
T ss_pred HHHCCeEEEECHHHHHHHHHhC--CCCC--CEEEEeCCCccHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHHc
Confidence 3444444444444444332 22 3344 47999999999988766431 21 34444544 555544332
Q ss_pred cch---hhhcccCCCCCCC-CCccchhhccCccccc----cCCCCC--CCCCC-------hhhhHHhhcccccCCcEEEE
Q 007645 485 GLI---GVYHDWCEPFSTY-PRTYDLIHVSGIESLI----KNPGSN--KNSCS-------LVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 485 Gli---g~~~~wce~f~ty-prtyDl~H~~~~~s~~----~~~~~~--~~~c~-------~~~~llEmdRiLRP~G~~i~ 547 (595)
|+- -+.+|..+ ++.+ +.+||.|=++---|.. ++|... ...-. -..||-+.=+.|+|||.+++
T Consensus 286 g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvY 364 (431)
T PRK14903 286 KLSSIEIKIADAER-LTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLY 364 (431)
T ss_pred CCCeEEEEECchhh-hhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 431 11223322 2212 3679988654322211 000000 00001 12568888999999999999
Q ss_pred e
Q 007645 548 R 548 (595)
Q Consensus 548 r 548 (595)
+
T Consensus 365 s 365 (431)
T PRK14903 365 S 365 (431)
T ss_pred E
Confidence 7
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.64 E-value=15 Score=37.19 Aligned_cols=128 Identities=13% Similarity=0.054 Sum_probs=82.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LPf 260 (595)
+..+++.+.... ++.||||--|.+..+|.+.+.. ..++..|+++.-++.|.++ +.. .....+|. -.++
T Consensus 7 L~~va~~V~~~~----~iaDIGsDHAYLp~~Lv~~~~~-~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l 80 (226)
T COG2384 7 LTTVANLVKQGA----RIADIGSDHAYLPIYLVKNNPA-STAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVL 80 (226)
T ss_pred HHHHHHHHHcCC----ceeeccCchhHhHHHHHhcCCc-ceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-cccc
Confidence 445555554332 5999999999999999998653 4556679999888888654 332 22333333 1133
Q ss_pred C-CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 P-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 p-d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
. +..+|.|+...+--. -...+|.+-...|+-=-+|++.-. ..-..+++.+....|++..+
T Consensus 81 ~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlILQPn--------~~~~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLILQPN--------IHTYELREWLSANSYEIKAE 141 (226)
T ss_pred CccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEECCC--------CCHHHHHHHHHhCCceeeee
Confidence 3 347999988765422 234667777777764446666421 11235888899999998866
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.41 E-value=15 Score=36.95 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=77.8
Q ss_pred HHHHHHHHhh---ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHH----HHHHHHHcCCCeEEEEcccc
Q 007645 184 DKYIDKLKQY---IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKA----QIQFALERGIPAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~---l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~----~l~~A~erg~~~~~~~~d~~ 256 (595)
..+...|..- ++...++ +||=+|+.+|+....+.+--. ...+.+++.|+. .+..|.+|. ++.-...|+
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~--~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA- 133 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGS--KVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDA- 133 (231)
T ss_pred hHHHHHHHcCcccCCcCCCC--EEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhCC-Cceeeeccc-
Confidence 3444444433 3455555 999999999988888876511 123445565553 455666653 222233333
Q ss_pred cCCC----CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC---chhHHHHHHHHHHcCcEEE
Q 007645 257 RLPF----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ---DKEWADLQAVARALCYELI 329 (595)
Q Consensus 257 ~LPf----pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~---~~~w~~l~~la~~~~w~~v 329 (595)
+.|. -=+..|+|++-- .-++....+...+..-||+||+++++.....-... ...+++-.+.++..+|++.
T Consensus 134 ~~P~~Y~~~Ve~VDviy~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~ 210 (231)
T COG1889 134 RKPEKYRHLVEKVDVIYQDV---AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEIL 210 (231)
T ss_pred CCcHHhhhhcccccEEEEec---CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceee
Confidence 2331 124589988642 12233457788899999999988887642111111 1224443344555566665
Q ss_pred Ee
Q 007645 330 AV 331 (595)
Q Consensus 330 ~~ 331 (595)
..
T Consensus 211 e~ 212 (231)
T COG1889 211 EV 212 (231)
T ss_pred EE
Confidence 44
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=84.41 E-value=48 Score=34.13 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=76.6
Q ss_pred cceEEEECCCCc-HHHHHHhhcCCceEEEEeecCcHHHHHH----HHHcCCCeEEEEccccc-CCCC-CCceeEEEEcCC
Q 007645 201 LRTALDMGCGVA-SFGGSMLSENILTLSFAPRDSHKAQIQF----ALERGIPAFVAMLGTRR-LPFP-AFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG-~~a~~La~~gv~~~~v~~vD~s~~~l~~----A~erg~~~~~~~~d~~~-LPfp-d~sFDlV~~s~v 273 (595)
+++||=+|=..- +++..|... ..+++-+|+++..+++ |.+.|+++.....|... ||-. .++||++++--
T Consensus 45 gk~il~lGDDDLtSlA~al~~~---~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGL---PKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT-----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcHHHHHHHhhCC---CCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC-
Confidence 458999997765 444444333 2366678999998875 45668888877777643 3321 47999999874
Q ss_pred Ccccc-cCHHHHHHHHHhhcCCCc-EEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEeeccCCcccccccC
Q 007645 274 LIPFT-AYNATYLIEVDRLLRPGG-YLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQN 351 (595)
Q Consensus 274 L~h~~-~d~~~~L~Ei~RvLRPGG-~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw~K~~~~~c~~~~~ 351 (595)
+++ +-...++......||..| ..+++-.. ....-..|..+++.+.++++-+..--.+...|.--....... .
T Consensus 121 --PyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~--~~~s~~~~~~~Q~~l~~~gl~i~dii~~Fn~Y~ga~~i~~~~--~ 194 (243)
T PF01861_consen 121 --PYTPEGLKLFLSRGIEALKGEGCAGYFGFTH--KEASPDKWLEVQRFLLEMGLVITDIIPDFNRYEGAEIIGNTR--F 194 (243)
T ss_dssp ---SSHHHHHHHHHHHHHTB-STT-EEEEEE-T--TT--HHHHHHHHHHHHTS--EEEEEEEEEEEB---S-GGGSH--H
T ss_pred --CCCHHHHHHHHHHHHHHhCCCCceEEEEEec--CcCcHHHHHHHHHHHHHCCcCHHHHHhhhcccccchhhcccc--e
Confidence 333 234578889999998755 43333221 111123488999999999987776655554443211111100 0
Q ss_pred CCCCCCCCCCCCCCCcccccccccc
Q 007645 352 EFGLELCDESDDPNYAWYFKLKKCV 376 (595)
Q Consensus 352 ~~~~p~C~~~~~~~~~wy~~l~~c~ 376 (595)
....|. ...|+.-||.....-|
T Consensus 195 ~~~l~v---~~~~~~~~y~s~~~ri 216 (243)
T PF01861_consen 195 WQVLPV---KKRPEKIWYRSTMPRI 216 (243)
T ss_dssp HHHSSS-------SS---EEEEEEE
T ss_pred eEEecc---ccccccccccceeEEE
Confidence 000111 1267788997655554
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.41 E-value=2.5 Score=42.75 Aligned_cols=89 Identities=20% Similarity=0.262 Sum_probs=59.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccc----cCCCCCCceeEEEEcC
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTR----RLPFPAFSFDIVHCSR 272 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~----~LPfpd~sFDlV~~s~ 272 (595)
.|+|.-||.|..+...+.++. .+.++|+++.-+..|+.+ |++ +.|.++|.. .+.+...-+|+|+.+.
T Consensus 97 ~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 799999999999988888765 445669999999999877 554 678888743 3345544566776554
Q ss_pred CCcccc--cCHHHHHHHHHhhcCCCcE
Q 007645 273 CLIPFT--AYNATYLIEVDRLLRPGGY 297 (595)
Q Consensus 273 vL~h~~--~d~~~~L~Ei~RvLRPGG~ 297 (595)
+|. .....-+..+...+.|.|.
T Consensus 174 ---pwggp~y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 174 ---PWGGPSYLRADVYDLETHLKPMGT 197 (263)
T ss_pred ---CCCCcchhhhhhhhhhhhcchhHH
Confidence 443 2223445555555565543
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=84.30 E-value=0.55 Score=42.31 Aligned_cols=39 Identities=26% Similarity=0.617 Sum_probs=27.5
Q ss_pred ceeEEEEcCCC--cccc-cCH--HHHHHHHHhhcCCCcEEEEEc
Q 007645 264 SFDIVHCSRCL--IPFT-AYN--ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 264 sFDlV~~s~vL--~h~~-~d~--~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.||+|.|..+. +|+. .|. ..++..+.+.|+|||.|++.-
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999997664 2332 122 378999999999999999953
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.30 E-value=7.9 Score=39.91 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=55.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHH--HHHHH--------HcCCCeEEEEcc--c-ccCCCCCCc-ee
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQ--IQFAL--------ERGIPAFVAMLG--T-RRLPFPAFS-FD 266 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~--l~~A~--------erg~~~~~~~~d--~-~~LPfpd~s-FD 266 (595)
..+||++|+|+|-.+...+...- ..+.--|..... ++..+ +.|..+....++ . ....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 45799999999966655554311 123223433222 22221 112233333222 1 111111223 99
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+++.|+.+- ...+.++.-+...|-.+|.+++..+
T Consensus 165 lilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 165 LILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 99999998554 3667788888888888887777653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.25 E-value=8.1 Score=40.48 Aligned_cols=162 Identities=18% Similarity=0.199 Sum_probs=89.1
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHHhh-------ccchh
Q 007645 418 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD-------RGLIG 488 (595)
Q Consensus 418 d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~e-------RGlig 488 (595)
+|+.|-+.|-.=.+... ...+. -++|.|||.|.-+-+|.. .| ---|..+|-. .-+.++-| -|-|+
T Consensus 129 ETEE~V~~Vid~~~~~~--~~~~~--~ildlgtGSGaIslsll~~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~ 202 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSE--HSKHT--HILDLGTGSGAISLSLLHGLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIE 202 (328)
T ss_pred cHHHHHHHHHHHHhhhh--hcccc--eEEEecCCccHHHHHHHhcCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceE
Confidence 35788888765333111 22222 799999999999888754 23 1111222222 33333332 35677
Q ss_pred hhcc--cCCCCCCCC---CccchhhccCcccc-------------ccCCCC--CCCCCC--hhhhHHhhcccccCCcEEE
Q 007645 489 VYHD--WCEPFSTYP---RTYDLIHVSGIESL-------------IKNPGS--NKNSCS--LVDLMVEMDRMLRPEGTVV 546 (595)
Q Consensus 489 ~~~~--wce~f~typ---rtyDl~H~~~~~s~-------------~~~~~~--~~~~c~--~~~~llEmdRiLRP~G~~i 546 (595)
+.|. --+.|-+|| .+||+|=++--... |.++.+ .+..|. +..+..=.=|.|+|||++.
T Consensus 203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 8876 566778887 89999877644332 111111 111122 1245566789999999999
Q ss_pred Ee-----CChHHHHHHHHh-HhccCceeEEeccCCCCCCCceEEEEEe
Q 007645 547 VR-----DSPEVIDKVSRI-ANTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 547 ~r-----d~~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
+. ++...+..+... -+.--|.+.+. .+-.+.+++++..+
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~---~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVV---SDFAGRPRFVIIHR 327 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhhee---ecccCCcceEEEEe
Confidence 85 344444444433 33334555444 23344667766554
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=84.18 E-value=16 Score=35.14 Aligned_cols=118 Identities=18% Similarity=0.226 Sum_probs=71.1
Q ss_pred ECCCCcHHHHHHhhc-C-CceEEEEeecCcHHHHH----------HHHHcCCCeEEEEcccccCC----CCCCceeEEEE
Q 007645 207 MGCGVASFGGSMLSE-N-ILTLSFAPRDSHKAQIQ----------FALERGIPAFVAMLGTRRLP----FPAFSFDIVHC 270 (595)
Q Consensus 207 IGCGtG~~a~~La~~-g-v~~~~v~~vD~s~~~l~----------~A~erg~~~~~~~~d~~~LP----fpd~sFDlV~~ 270 (595)
||=|.=+|+..|++. + ...+..+..|..++..+ ..++.|..+.+. .|+..+. ...+.||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEEE
Confidence 566666888888877 2 22233344455443333 223345555443 3555543 35688999997
Q ss_pred cCCCcccc-------cC-------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 271 SRCLIPFT-------AY-------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 271 s~vL~h~~-------~d-------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++- |.. .+ ...++..+.++|+++|.+.++-... ..+..|. ++++|++.++.+...
T Consensus 82 NFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~---~py~~W~-i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 82 NFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG---QPYDSWN-IEELAAEAGLVLVRK 150 (166)
T ss_pred eCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC---CCCcccc-HHHHHHhcCCEEEEE
Confidence 753 433 01 1267888999999999999986411 1122343 678899888887755
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.15 E-value=2.4 Score=45.75 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=53.5
Q ss_pred cccCCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---C----CceEEEEeecCcHH
Q 007645 164 KESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---N----ILTLSFAPRDSHKA 236 (595)
Q Consensus 164 ~~e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---g----v~~~~v~~vD~s~~ 236 (595)
..+++.++-|.-+..|..-...++-++.+.+.... ...+++||.|.|.++..++.. . ....++.-+++|+.
T Consensus 43 G~~GDFiTApels~lFGella~~~~~~wq~~g~p~--~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 43 GRKGDFITAPELSQLFGELLAEQFLQLWQELGRPA--PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred cccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCC--CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 34567777777776666555555444444443322 347999999999999988765 1 23678888999998
Q ss_pred HHHHHHHc
Q 007645 237 QIQFALER 244 (595)
Q Consensus 237 ~l~~A~er 244 (595)
..+.-+++
T Consensus 121 L~~~Qk~~ 128 (370)
T COG1565 121 LRARQKET 128 (370)
T ss_pred HHHHHHHH
Confidence 87665554
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=84.01 E-value=1.4 Score=49.13 Aligned_cols=141 Identities=21% Similarity=0.320 Sum_probs=67.7
Q ss_pred ccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCe----eeEEecccchhHHHh------hhc--CCCeEEEEeccCCCC-
Q 007645 409 KNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAI----RNIMDMNAFFGGFAA------ALT--SDPVWVMNVVPARKS- 475 (595)
Q Consensus 409 ~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~----RnvmDm~~~~g~faa------~l~--~~~vwvmnv~p~~~~- 475 (595)
..+.|.|++|.-++..-=+.-...|.......+. ..|||+|||.|-... +-. ...|..+ -....
T Consensus 150 s~tYe~fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAV---Ekn~~A 226 (448)
T PF05185_consen 150 SQTYEVFEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAV---EKNPNA 226 (448)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEE---ESSTHH
T ss_pred cccHhhHhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEE---cCCHhH
Confidence 3478999999887743222211112333344433 469999999998741 111 2233332 11111
Q ss_pred -Cchh-HHhhccc---hhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe--
Q 007645 476 -STLS-VIYDRGL---IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-- 548 (595)
Q Consensus 476 -~~l~-~i~eRGl---ig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-- 548 (595)
-+|+ .|-+.|+ |=++|.==+.+.. |--.|+|= |-|.+ +-...-.+...|.-.||.|+|+|.+|=+
T Consensus 227 ~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDIIV-----SElLG--sfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 227 VVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDIIV-----SELLG--SFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp HHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEEE-----E---B--TTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEEE-----EeccC--CccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 2343 2244454 4444432233332 44555543 44431 1111224456788899999999988822
Q ss_pred -------CChHHHHHHHHh
Q 007645 549 -------DSPEVIDKVSRI 560 (595)
Q Consensus 549 -------d~~~~~~~~~~~ 560 (595)
......+++...
T Consensus 299 t~ylaPiss~~l~~~~~~~ 317 (448)
T PF05185_consen 299 TSYLAPISSPKLYQEVRNW 317 (448)
T ss_dssp EEEEEEEE-HHHHHHHHHH
T ss_pred hhEEEEeeCHHHHHHHHhh
Confidence 344666666544
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.7 Score=46.36 Aligned_cols=93 Identities=11% Similarity=0.139 Sum_probs=54.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-h------hhhccc-CCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-I------GVYHDW-CEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-i------g~~~~w-ce~f~typrtyDl~H~~~~~ 513 (595)
.+|||+|||.|.++..|.... -+|+-.|-. +-|.++-+|.- . +.--++ +..+...+.+||+|=|..++
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL 222 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL 222 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence 479999999999999998753 256666654 66766666531 0 011111 11122335889999888887
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEE
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV 546 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i 546 (595)
.++. . -.+..++-.+-++ .++|.+|
T Consensus 223 ~H~p------~-~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 223 IHYP------Q-DKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EecC------H-HHHHHHHHHHHhh-cCCEEEE
Confidence 7663 1 1233455555554 4555544
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.85 E-value=1.1 Score=45.46 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCc-----eE---EEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENIL-----TL---SFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFS 264 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~-----~~---~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~s 264 (595)
..+|+|+.+..|+|+..|.++-.. .. .++.+|+.+- |- -..+.-.++|+.... |....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M----aP--I~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM----AP--IEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC----Cc--cCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 458999999999999998876211 01 1566665321 11 112334455544322 44557
Q ss_pred eeEEEEcCC-----CcccccCH-----HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh--HHHHHHHHHH
Q 007645 265 FDIVHCSRC-----LIPFTAYN-----ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE--WADLQAVARA 323 (595)
Q Consensus 265 FDlV~~s~v-----L~h~~~d~-----~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~--w~~l~~la~~ 323 (595)
.|+|+|-.+ +|.+.+.. -.+|.-..++|||||.|+--. +..++.. +.+|+.++++
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi----fRg~~tslLysql~~ff~k 182 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI----FRGRDTSLLYSQLRKFFKK 182 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh----hccCchHHHHHHHHHHhhc
Confidence 899999543 32222111 145666788999999998643 3333322 5566666663
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=1.5 Score=45.88 Aligned_cols=101 Identities=11% Similarity=0.112 Sum_probs=59.1
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC--CccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP--RTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ--rtyDl~H~~~~~s~~~~ 518 (595)
..|+|+|||.|.|+.++... +- .+|+-.|-. ..+..+-++ +.. ..=.+.-+..++ ++||+|=++--|-+...
T Consensus 66 grVLDLGcGsGilsl~la~r~~~--~~V~gVDisp~al~~Ar~n-~~~-v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP--EKIVCVELNPEFARIGKRL-LPE-AEWITSDVFEFESNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHh-CcC-CEEEECchhhhcccCCCcEEEEcCCccccCc
Confidence 47999999999998877543 11 234444443 455544332 111 111122233333 68999999888875321
Q ss_pred CCCCCC-----------CC-ChhhhHHhhcccccCCcEEEEe
Q 007645 519 PGSNKN-----------SC-SLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~-----------~c-~~~~~llEmdRiLRP~G~~i~r 548 (595)
..... .| .+...+-..-++|.|+|.+++-
T Consensus 142 -~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 142 -TDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred -hhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 10011 11 2567889999999999988763
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.53 E-value=3.5 Score=36.79 Aligned_cols=85 Identities=21% Similarity=0.261 Sum_probs=59.0
Q ss_pred CCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccc---cC-C-CCCCceeEEEEcCCCcccccCHHHH
Q 007645 210 GVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTR---RL-P-FPAFSFDIVHCSRCLIPFTAYNATY 284 (595)
Q Consensus 210 GtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~---~L-P-fpd~sFDlV~~s~vL~h~~~d~~~~ 284 (595)
|.|.++..+++... ..+..+|.++..++.+++.|....+...+.. .+ . ...+.+|+|+-.- .-+..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-------g~~~~ 71 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCV-------GSGDT 71 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESS-------SSHHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEec-------CcHHH
Confidence 45788888887732 5777889999999999998844333221110 01 1 3345799998432 12568
Q ss_pred HHHHHhhcCCCcEEEEEcC
Q 007645 285 LIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 285 L~Ei~RvLRPGG~lvls~p 303 (595)
+.+...+|++||.+++.+-
T Consensus 72 ~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 72 LQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp HHHHHHHEEEEEEEEEESS
T ss_pred HHHHHHHhccCCEEEEEEc
Confidence 9999999999999999885
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=2.1 Score=48.69 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=61.7
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-cch------------hhh-cccCCCCCCCCCcc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLI------------GVY-HDWCEPFSTYPRTY 504 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Gli------------g~~-~~wce~f~typrty 504 (595)
.+-++|+|+|||.|+.+..+.+.+- +-.|+-.|-. .-+.++-+. .+- -++ .|=-+-....+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~-v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPD-VEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCC-cCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4458899999999999988766541 0112222211 222222221 000 000 01000112346789
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCce
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~ 567 (595)
|+|-.+- ..... + ...+=--++++-++-|+|+|||.+++.. ..+...++.+.+++....
T Consensus 375 DvIi~D~-~~~~~-~--~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDL-PDPSN-P--ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeC-CCCCC-c--chhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9997662 11110 0 0001001245667789999999999953 244455555555555333
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=81.25 E-value=4.8 Score=45.49 Aligned_cols=99 Identities=15% Similarity=0.172 Sum_probs=69.0
Q ss_pred cceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHc-----CCCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALER-----GIPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~er-----g~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
...|+-+|+|-|-+....++. --..+.+..++-+++++-.-..+ .-.+.++..|+...+-|..+.|++++-
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE- 446 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE- 446 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-
Confidence 446789999999766554433 12356788888888887665554 235778888898888656889999863
Q ss_pred CCcccccCH--HHHHHHHHhhcCCCcEEEE
Q 007645 273 CLIPFTAYN--ATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 273 vL~h~~~d~--~~~L~Ei~RvLRPGG~lvl 300 (595)
.|..+.++. ..-|.-+-+.|||.|..+=
T Consensus 447 LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 447 LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 233443222 4789999999999976643
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.82 E-value=2 Score=44.03 Aligned_cols=99 Identities=12% Similarity=0.046 Sum_probs=54.2
Q ss_pred eeEEecccchhHHHhhhcCC----CeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCC--CCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTY--PRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~ty--prtyDl~H~~~~~s~ 515 (595)
..|+|+|||.|.|+.++... +. .+|.-.+-. +.+..+-+ .+.. .+=.+.-|-.+ +.+||+|=++=-|..
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~--~~V~aVEID~~Al~~Ar~-n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKP--REIVCVELNHTYYKLGKR-IVPE-ATWINADALTTEFDTLFDMAISNPPFGK 126 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCC--cEEEEEECCHHHHHHHHh-hccC-CEEEEcchhcccccCCccEEEECCCCCC
Confidence 37999999999999987542 21 244444332 33433332 2211 12222333333 358999998888875
Q ss_pred ccCCCCCCCC---CChhh-hHHhhcccccCCcEEE
Q 007645 516 IKNPGSNKNS---CSLVD-LMVEMDRMLRPEGTVV 546 (595)
Q Consensus 516 ~~~~~~~~~~---c~~~~-~llEmdRiLRP~G~~i 546 (595)
..... ...| ..+.. ++-..-|+||||++|+
T Consensus 127 ~~~~d-~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 127 IKTSD-FKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ccccc-cCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 43111 1222 23333 5555567999999843
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=80.30 E-value=14 Score=38.96 Aligned_cols=88 Identities=16% Similarity=0.067 Sum_probs=56.4
Q ss_pred cceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 201 LRTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 201 ~r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
..+||=.|+| .|.++..+++. |. .+...+.++...+.|++.|....+.. ... ..+.+|+++-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~---~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~----- 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGA---TVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP----- 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCC---eEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC-----
Confidence 3489989975 34555555554 33 45566788888999998886533221 111 1235787653221
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...+.+..+.|++||++++.+.
T Consensus 233 -~-~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -A-GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -c-HHHHHHHHHhhCCCcEEEEEec
Confidence 1 2468889999999999998774
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.08 E-value=5.7 Score=40.93 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=54.9
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH---HHcC-----------CCeEEEEc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA---LERG-----------IPAFVAML 253 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A---~erg-----------~~~~~~~~ 253 (595)
+.|.+.+..+.+..-+|||.=+|.|..+..++.+|.. ++.+|-|+...... .++. -+..+...
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3455666655554448999999999999999999764 66678777554332 3331 12344455
Q ss_pred cccc-CCCCCCceeEEEEcCCCcc
Q 007645 254 GTRR-LPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 254 d~~~-LPfpd~sFDlV~~s~vL~h 276 (595)
+... |.-...+||+|+.--.+.|
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCC
Confidence 5322 2212247999998877755
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 595 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 1e-08 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 1e-07 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 4e-07 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 4e-07 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 5e-07 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 8e-07 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 1e-06 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 1e-06 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 1e-06 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 2e-06 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-06 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 3e-06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 3e-06 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 3e-06 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 5e-06 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 5e-06 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 9e-06 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 1e-05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 1e-05 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 1e-05 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 1e-05 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 2e-05 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 2e-05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 3e-05 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 4e-05 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 5e-05 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 6e-05 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 7e-05 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 7e-05 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 8e-05 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 9e-05 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 1e-04 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 1e-04 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 1e-04 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-04 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 1e-04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 2e-04 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 3e-04 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 4e-04 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 5e-04 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 5e-04 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 5e-04 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 5e-04 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-04 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 7e-04 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 7e-04 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 7e-04 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 31/171 (18%)
Query: 169 YFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSM--LSENI--- 223
Y+ G D D+ D++ + + G LD+GCG+ G L+
Sbjct: 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGI---GKPAVRLATARDVR 86
Query: 224 ---LTLSFAPRDSHKAQIQFALERGIPAFVAMLGT------RRLPFPAFSFDIVHCSRCL 274
+++S + Q+ A R A +A T LPF SFD V +
Sbjct: 87 VTGISIS-------RPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVW-ALES 138
Query: 275 IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC 325
+ L E+ R+LRPGG + I+ + + A
Sbjct: 139 LHHMPDRGRALREMARVLRPGGTVAIA----DFVLLAPVEGAKKEAVDAFR 185
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 22/123 (17%)
Query: 205 LDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALERGIPA---FVAMLG 254
LD+GCG T + D + IQ ERG F+
Sbjct: 58 LDVGCGDGYG----------TYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDL 107
Query: 255 TRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 314
+ LPF F+ + L L E+ R+L+ GY I+ ++ +
Sbjct: 108 SS-LPFENEQFEAIMAINSLEWTEEPLRA-LNEIKRVLKSDGYACIAILGPTAKPRENSY 165
Query: 315 ADL 317
L
Sbjct: 166 PRL 168
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 36/161 (22%)
Query: 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR--- 231
T+FA + + IT GT +D+G G G L+++ A +
Sbjct: 21 SKTLFAPIYPIIAENIINRFGITAGTC---IDIGSG----PG------ALSIALAKQSDF 67
Query: 232 -----DSHKAQIQFALER----GIPAFV------AMLGTRRLPFPAFSFDIVHCSRCLIP 276
D K + AL+ + + +P D++ SR +
Sbjct: 68 SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH----NIPIEDNYADLI-VSRGSVF 122
Query: 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADL 317
F AT E+ R+L+ GG I G +D A++
Sbjct: 123 FWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEM 163
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 4e-07
Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 10/168 (5%)
Query: 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSH 234
M + + +Y + LD G G S+ E + +
Sbjct: 2 MKTIIRQPQLYRFLKYCNESNLDKT-VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLK 60
Query: 235 KAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLR 293
KA+ F+ E ++ R+LPF S V+ + + + E+ R+L+
Sbjct: 61 KAE-NFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLK 119
Query: 294 PGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKP 341
PGG I+ +D+ + + + +L + +
Sbjct: 120 PGGLACINF----LTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSL 163
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-07
Identities = 24/149 (16%), Positives = 46/149 (30%), Gaps = 33/149 (22%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALERGIPA-FVAML 253
L+ GCG G F P+ D ++ A A
Sbjct: 50 TRVLEAGCG----HGP------DAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWN 99
Query: 254 GTRRLPFP-AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 312
G LP F ++ + ++ + L P + + GP + P
Sbjct: 100 GKGELPAGLGAPFGLIVSR-----RGPTSV--ILRLPELAAPDAHFLYVGPRLNVP---- 148
Query: 313 EWADLQAVARALCYELIAVDGNTVIWKKP 341
++ A+ ++++A D +V+ P
Sbjct: 149 ---EVPERLAAVGWDIVAEDHVSVLAHAP 174
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 8e-07
Identities = 31/179 (17%), Positives = 51/179 (28%), Gaps = 43/179 (24%)
Query: 205 LDMGCGVASFGGSMLSENILTLSFAPR----DSHKAQIQFALERGIPAFVAMLGTR---- 256
D+GCG GG L L + D I+ E A A R
Sbjct: 51 ADIGCGT---GGQTL---FLADYVKGQITGIDLFPDFIEIFNEN---AVKANCADRVKGI 101
Query: 257 -----RLPFPAFSFDIVHCSRCL--IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK 309
LPF D++ + I F + E + L+ GG++ +S W
Sbjct: 102 TGSMDNLPFQNEELDLIWSEGAIYNIGF----ERGMNEWSKYLKKGGFIAVSE--ASWFT 155
Query: 310 QDKEWADLQAVARALCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAW 368
+ A+++ E+ + ++ G P W
Sbjct: 156 -SERPAEIEDFWMDAYPEISVIPTCIDKMERA------------GYTPTAHFILPENCW 201
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 21/156 (13%)
Query: 177 TMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR---DS 233
F Y+ +L+ + +++G G G + +
Sbjct: 26 RWFLVHRFAYLSELQAVKCLLPE--GRGVEIGVG----TGRFAVP------LKIKIGVEP 73
Query: 234 HKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR 293
+ + A +RG+ LP SFD I F L E R+L+
Sbjct: 74 SERMAEIARKRGVFVLKGTA--ENLPLKDESFDFA-LMVTTICFVDDPERALKEAYRILK 130
Query: 294 PGGYLVISGPPVQWPKQD---KEWADLQAVARALCY 326
GGYL++ + K A +
Sbjct: 131 KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFF 166
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 1e-06
Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 24/137 (17%)
Query: 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR------ 231
+ + I+ L+ + LD+ CGV GG +
Sbjct: 16 INSQEYRSRIETLEPLLMKYMKKRGKVLDLACGV---GG-------FSFLLEDYGFEVVG 65
Query: 232 -DSHKAQIQFALERGIPA-----FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATY 284
D + I+ A E F+ R+L F +FD V ++ F
Sbjct: 66 VDISEDMIRKAREYAKSRESNVEFIVGDA-RKLSFEDKTFDYVIFIDSIVHFEPLELNQV 124
Query: 285 LIEVDRLLRPGGYLVIS 301
EV R+L+P G ++
Sbjct: 125 FKEVRRVLKPSGKFIMY 141
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 34/144 (23%)
Query: 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSM--LSENI------LTL 226
G + G + K+ I + + LD+G G+ GG ++E + +
Sbjct: 32 GENYISSGGLEATKKILSDIELNENS--KVLDIGSGL---GGGCMYINEKYGAHTHGIDI 86
Query: 227 SFAPRDSHKAQIQFALERGIPAFVAMLGT--------RRLPFPAFSFDIVHCSRCLIPFT 278
+ A ER V+ FP +FD+++ ++ +
Sbjct: 87 C-------SNIVNMANER-----VSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALS 134
Query: 279 AYN-ATYLIEVDRLLRPGGYLVIS 301
N + + L+P G L+I+
Sbjct: 135 LENKNKLFQKCYKWLKPTGTLLIT 158
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 32/151 (21%), Positives = 46/151 (30%), Gaps = 35/151 (23%)
Query: 169 YFTFPGGGTMFADGADKYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLS 227
F G+ + K +I +T + D+GCG GG T+
Sbjct: 16 ICDFFSNMERQGPGSPEVTLKALSFIDNLTEKS--LIADIGCGT---GGQ-------TMV 63
Query: 228 FAPR--------DSHKAQIQFALERGIPAFVAMLGTR---------RLPFPAFSFDIVHC 270
A D I A + L R LPF D++
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRN---ARQSGLQNRVTGIVGSMDDLPFRNEELDLIW- 119
Query: 271 SRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301
S I + L E + L+ GGYL +S
Sbjct: 120 SEGAIYNIGFERG-LNEWRKYLKKGGYLAVS 149
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 35/165 (21%)
Query: 178 MFADGADKYID-KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR----- 231
+ A G D Y + +L + G + LD GCG + + +
Sbjct: 26 LAAAGNDIYGEARLIDAMAPRGAKI---LDAGCGQGR----------IGGYLSKQGHDVL 72
Query: 232 --DSHKAQIQFALER--GIPAFVA-MLGTRRLPFPAFSFDIVHCSRCLIPFTA--YNATY 284
D I +A + V + FD++ + ++ F A
Sbjct: 73 GTDLDPILIDYAKQDFPEARWVVGDL---SVDQISETDFDLIVSAGNVMGFLAEDGREPA 129
Query: 285 LIEVDRLLRPGGYLVIS-GPPVQWPKQDKEWADLQAVARALCYEL 328
L + R L G VI G W + D VA + EL
Sbjct: 130 LANIHRALGADGRAVIGFGAGRGWV-----FGDFLEVAERVGLEL 169
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 29/188 (15%), Positives = 57/188 (30%), Gaps = 38/188 (20%)
Query: 159 HQGWMKES---GPYFTFPGGGTMFADGA----DKYIDKLKQYIPITGGTLRTALDMGCGV 211
W E G + P + + + +L + LD+G G
Sbjct: 37 FHVWGGEDIHVG-LYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQA--KGLDLGAGY 93
Query: 212 ASFGGSM--LSENI------LTLSFAPRDSHKAQIQFALER----GIPAFVA-MLG-TRR 257
GG+ L L ++ Q + E G+ + G
Sbjct: 94 ---GGAARFLVRKFGVSIDCLNIA-------PVQNKRNEEYNNQAGLADNITVKYGSFLE 143
Query: 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADL 317
+P S+D + S+ + E R+L+P G + I+ P + + + +
Sbjct: 144 IPCEDNSYDFI-WSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP---MKEDGIDKSSI 199
Query: 318 QAVARALC 325
Q + +
Sbjct: 200 QPILDRIK 207
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 8/122 (6%)
Query: 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243
+ +L++YIP G R LD+GCG F E I ++ D ++ I+F E
Sbjct: 26 ELVKARLRRYIPYFKGCRR-VLDIGCGRGEFLELCKEEGIESIGV---DINEDMIKFC-E 80
Query: 244 RGIPAFVAMLGTRRLPFPAFSFDIVHCSRCL--IPFTAYNATYLIEVDRLLRPGGYLVIS 301
+ P D V S + + L ++ Y+VI
Sbjct: 81 GKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFEL-LSLCYSKMKYSSYIVIE 139
Query: 302 GP 303
P
Sbjct: 140 SP 141
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 29/139 (20%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPR---------DSHKAQIQFALERGIPAFVAML 253
L+ GCG+ + T+ A D ++ A E + +
Sbjct: 40 KVLEAGCGIGA----------QTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNV 89
Query: 254 GTRR-----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS----GPP 304
+ LPF SFD + L + L + ++L+PGG + + G
Sbjct: 90 KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEE-ALKSLKKVLKPGGTITVIEGDHGSC 148
Query: 305 VQWPKQDKEWADLQAVARA 323
P+ K + R
Sbjct: 149 YFHPEGKKAIEAWNCLIRV 167
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 27/120 (22%)
Query: 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALER 244
++I + LD+GC G L + ++ + A E+
Sbjct: 27 KHIKKEWKEV---LDIGCS----SG------ALGAAIKENGTRVSGIEAFPEAAEQAKEK 73
Query: 245 GIPAFVAMLGTRRLPFPAFSFDIVHCSRCL--IPFTAYN-ATYLIEVDRLLRPGGYLVIS 301
+ + T +P+ FD V L + + + +V ++ G ++ S
Sbjct: 74 LDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF----DPWAVIEKVKPYIKQNGVILAS 129
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 5e-06
Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 33/145 (22%)
Query: 175 GGTMFADGADKY----------IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL 224
G +++ +Y ++ + + + G D+G G G
Sbjct: 1 GMSIYNSIGKQYSQTRVPDIRIVNAIINLLNLPKG--SVIADIGAG----TG------GY 48
Query: 225 TLSFAPRDSH-------KAQIQFALERGIPAFVAMLGT-RRLPFPAFSFDIVHCSRCLIP 276
+++ A + Q A P G L P S D V +
Sbjct: 49 SVALANQGLFVYAVEPSIVMRQQA--VVHPQVEWFTGYAENLALPDKSVDGVISILAIHH 106
Query: 277 FTAYNATYLIEVDRLLRPGGYLVIS 301
F+ + E+ R++R G ++++
Sbjct: 107 FSHLEKS-FQEMQRIIRDGTIVLLT 130
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSH------------KAQIQFALERGIPAFV 250
LD+G G G L+F+P A FA E+G+
Sbjct: 24 RVLDIGAG----AG------HTALAFSPYVQECIGVDATKEMVEVAS-SFAQEKGVENVR 72
Query: 251 AMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301
GT LPFP SFDI+ C F+ + EV R+L+ G ++
Sbjct: 73 FQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA-VREVARVLKQDGRFLLV 123
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 16/155 (10%)
Query: 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQ 237
+ D + +L++ + + LD+GCG + ++ + ++ D K
Sbjct: 66 HYQPLRDAIVAQLRERLDDKATAV---LDIGCGEGYYT-HAFADALPEITTFGLDVSKVA 121
Query: 238 IQFALER--GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG 295
I+ A +R + VA RLPF S D + E+ R+++PG
Sbjct: 122 IKAAAKRYPQVTFCVASS--HRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPG 171
Query: 296 GYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330
G+++ + P + + K + A E +
Sbjct: 172 GWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLE 206
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 18/104 (17%)
Query: 205 LDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALERGIPAFVAMLGTRR 257
LD+G G + +L R D K ++ A E+G+ V
Sbjct: 59 LDLGGGTGKW----------SLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA-ED 107
Query: 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301
LPFP+ +F+ V ++ + E+ R+L P G L+ +
Sbjct: 108 LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIAT 151
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 27/154 (17%), Positives = 47/154 (30%), Gaps = 32/154 (20%)
Query: 159 HQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSM 218
H+G+ + + P D+ L+Q D GCG S
Sbjct: 40 HRGFQSQVKKWPLQP---------VDRIARDLRQRPASL-----VVADFGCGDCRLASS- 84
Query: 219 LSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278
+ + A D V + ++P S D+ CL
Sbjct: 85 IRNPVHCFDLASLDPR---------------VTVCDMAQVPLEDESVDVAVF--CLSLMG 127
Query: 279 AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 312
+L E +R+L+PGG L ++ ++
Sbjct: 128 TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRT 161
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 19/134 (14%), Positives = 35/134 (26%), Gaps = 27/134 (20%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALER--GIPAFVAML 253
LD+G G G T A + ++ A + + +
Sbjct: 44 VILDVGSGT----GR------WTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTI 93
Query: 254 GTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPPVQWPKQDK 312
L + + LI L+ + + GG L++S +
Sbjct: 94 --TDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMS-----FFSGPS 146
Query: 313 EWADLQAVARALCY 326
VA A +
Sbjct: 147 LEPMYHPVATAYRW 160
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 25/119 (21%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALERGIPAFVAMLGT 255
+D GCG + D + ++ E+ V L
Sbjct: 20 VIVDYGCGNGFY----------CKYLLEFATKLYCIDINVIALKEVKEKF--DSVITLSD 67
Query: 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 314
P S D + + + EV R+L+ G ++I + W K++
Sbjct: 68 P-KEIPDNSVDFILFANSF-HDMDDKQHVISEVKRILKDDGRVII----IDWRKENTGI 120
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 30/148 (20%), Positives = 42/148 (28%), Gaps = 28/148 (18%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALERGIPAFVAML- 253
LD+GCG G L + A R D + + A G
Sbjct: 54 ERVLDLGCG----EG------WLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASY 103
Query: 254 --GTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP-PVQWPKQ 310
+D++ C+ + L + LL PGG LVI P
Sbjct: 104 AQLAEAKVPVGKDYDLI-CANFALLHQDIIEL-LSAMRTLLVPGGALVIQTLHPWSVAD- 160
Query: 311 DKEWADLQAVARALCYELIAVDGNTVIW 338
D Q R + A D + W
Sbjct: 161 ----GDYQDGWREESFAGFAGDWQPMPW 184
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 26/176 (14%), Positives = 49/176 (27%), Gaps = 41/176 (23%)
Query: 177 TMFADGADKY----------IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTL 226
K +K+ + + G T LD+G G G
Sbjct: 6 KFDPSKIKKLDDPSRLELFDPEKVLKEFGLKEG--MTVLDVGTG----AG------FYLP 53
Query: 227 SFAPR----------DSHKAQIQFALER----GIPAFVAMLGT-RRLPFPAFSFDIVHCS 271
+ D + + +A E+ G+ + ++P P + D + +
Sbjct: 54 YLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA 113
Query: 272 RCLIPFTAYNATYLIEVDRLLRPGGYLVI---SGPPVQWPKQDKEWADLQAVARAL 324
+ +L E+ R+ +P YL I +E V L
Sbjct: 114 -FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLIL 168
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-05
Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 35/135 (25%)
Query: 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSH-------- 234
+ KL Q + G LD+ G GG + +FAP
Sbjct: 22 KGSDLAKLMQIAALKGN--EEVLDVATG----GGHV------ANAFAPFVKKVVAFDLTE 69
Query: 235 ----KAQIQFALERGIP--AFV---AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYL 285
A+ F G +V A ++PF F IV C F + +
Sbjct: 70 DILKVAR-AFIEGNGHQQVEYVQGDAE----QMPFTDERFHIVTCRIAAHHFPNPASF-V 123
Query: 286 IEVDRLLRPGGYLVI 300
E R+L+ GG L++
Sbjct: 124 SEAYRVLKKGGQLLL 138
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 38/195 (19%), Positives = 61/195 (31%), Gaps = 26/195 (13%)
Query: 150 YNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDK-LKQYIPITGGTLR---TAL 205
Y K + AD AD+ ++K + T L
Sbjct: 29 YGKTLQSSADLKTSACKLAAAVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVL 88
Query: 206 DMGCG-----------VASFG---GSMLSENILTLSFAPRDSHKAQIQFALERG----IP 247
D+GCG V G G + +N L ++ + H + + R +
Sbjct: 89 DLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148
Query: 248 AFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS--GPP 304
F+ L T P S DIV C+ + E+ R+LR GG L S
Sbjct: 149 GFIENLATAEPEGVPDSSVDIVIS-NCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYAD 207
Query: 305 VQWPKQDKEWADLQA 319
+ + ++ L
Sbjct: 208 RRLSEAAQQDPILYG 222
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 40/161 (24%)
Query: 179 FADGADKYIDK------------LKQYIPITGGTLRTALDMGCG-------VASFGGSM- 218
F + + LK+ +P +T LD+GCG A G
Sbjct: 13 FFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAKKV 70
Query: 219 ----LSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274
LSE +LT A R + + + + + ++++V S
Sbjct: 71 LGIDLSERMLTE--AKRKTTSPVVCYE--------QKAI--EDIAIEPDAYNVV-LSSLA 117
Query: 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP-PVQWPKQDKEW 314
+ + A +V L+ G + S PV ++W
Sbjct: 118 LHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDW 158
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 7e-05
Identities = 25/149 (16%), Positives = 42/149 (28%), Gaps = 37/149 (24%)
Query: 177 TMFADGADKYIDKLKQYIPITGGTL--------------RTALDMGCGVASFGGSMLSEN 222
+ A Y D+L+ + P G + L++G G
Sbjct: 3 SALLRAAYAY-DRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTG---------- 51
Query: 223 ILTLSFAPRDSH-------KAQIQFA---LERGIPAFVAMLGT-RRLPFPAFSFDIVHCS 271
+ L R A ++ + + R +P P S V
Sbjct: 52 RIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVV 111
Query: 272 RCLIPFTAYNATYLIEVDRLLRPGGYLVI 300
+ L E R+L+PGG L+
Sbjct: 112 HLWHLVPDWPKV-LAEAIRVLKPGGALLE 139
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 7e-05
Identities = 18/134 (13%), Positives = 29/134 (21%), Gaps = 21/134 (15%)
Query: 177 TMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR----- 231
F D + + G L++ G G T +
Sbjct: 24 ATFVPYMDSAAPAALERLR-AGNIRGDVLELASG----TGYW------TRHLSGLADRVT 72
Query: 232 --DSHKAQIQFALERGIPAFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIE 287
D I A G+ +D V + L +
Sbjct: 73 ALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDR-QWDAVFFAHWLAHVPDDRFEAFWES 131
Query: 288 VDRLLRPGGYLVIS 301
V + PGG +
Sbjct: 132 VRSAVAPGGVVEFV 145
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 8e-05
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 23/132 (17%)
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR------- 231
+ + Y D L+ + + G + L+ G G G LT
Sbjct: 27 YKEVFAHYEDILEDVVNKSFGNV---LEFGVGT----G------NLTNKLLLAGRTVYGI 73
Query: 232 DSHKAQIQFALERGIPAFVAMLGT-RRLPFPAFSFDIVHCSRCLIPFTAYNATYLI-EVD 289
+ + A E+ F G P S D + + T I +
Sbjct: 74 EPSREMRMIAKEKLPKEFSITEGDFLSFEVPT-SIDTIVSTYAFHHLTDDEKNVAIAKYS 132
Query: 290 RLLRPGGYLVIS 301
+LL GG +V +
Sbjct: 133 QLLNKGGKIVFA 144
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 9e-05
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 180 ADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLS---ENILTLSFAPRDSHKA 236
+ + K++ + + P GT LD G G+ +L + + +A
Sbjct: 60 INSSRKFLQRFLREGPNKTGTSCA-LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQA 118
Query: 237 QIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPG 295
+ E G + S+D++ + T + A +L LRP
Sbjct: 119 KTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN 178
Query: 296 GYLVIS 301
G +VI
Sbjct: 179 GIIVIK 184
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPA-FVAMLGTRRLPF 260
+ L++G G + + + + + A + R A +V G LPF
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRAPEATWVRAWGEA-LPF 91
Query: 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301
P SFD+V L L+E R+LRPGG LV+
Sbjct: 92 PGESFDVVLLFTTLEFVEDVERV-LLEARRVLRPGGALVVG 131
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 45/268 (16%), Positives = 68/268 (25%), Gaps = 89/268 (33%)
Query: 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSM--LSENI------LTLSFAPRDSH 234
A+ +D L Q P TL +D GCG GGSM +TLS
Sbjct: 105 AEFLMDHLGQAGP--DDTL---VDAGCGR---GGSMVMAHRRFGSRVEGVTLS------- 149
Query: 235 KAQIQFALER----GIPAFVAMLGT--RRLPFPAFSFDIV-------HCSRCLIPFTAYN 281
AQ F R I V PF + +
Sbjct: 150 AAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMY---------VDL 200
Query: 282 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKP 341
E R L+ GG V + + + V++ + + ++
Sbjct: 201 HDLFSEHSRFLKVGGRYVT----ITGCWNPRYGQPSKWVSQINAH--FECNIHSR----- 249
Query: 342 VGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKA 401
L + L D T+P W R T +
Sbjct: 250 --REYLRAMADNRLVPHTIVD-----------------------LTPDTLPYWELRATSS 284
Query: 402 PSRALVMKNGYDVFEADSRRWRRRVAYY 429
+ G + +A +R Y
Sbjct: 285 ------LVTGIE--KAFIESYRDGSFQY 304
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 29/118 (24%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSH-------KAQIQFALERGIPAFVAMLGT 255
LD+GCG G ++L A + I+ A +
Sbjct: 33 EILDIGCG----SG------KISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTG 82
Query: 256 RR----------LPFPAFSFDIVHCSRCL--IPFTAYNATYLIEVDRLLRPGGYLVIS 301
+ L F SFD L +P + + EV R+L+PG YL +
Sbjct: 83 GKAEFKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLV 140
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 25/112 (22%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPR--------DSHKAQIQFALER----GIPAF 249
+D+GCG F D + + A GI
Sbjct: 45 LRIVDLGCGFGWF----------CRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYE 94
Query: 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVIS 301
A L +L P SFD+ S + + A V + L PGG+ V S
Sbjct: 95 RADL--DKLHLPQDSFDLA-YSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 28/145 (19%)
Query: 179 FADGADK--YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR----- 231
+A+ + + K +P G L++GCG G +
Sbjct: 24 YAERQPRSATLTKFLGELP-AGAK---ILELGCGA---GY-------QAEAMLAAGFDVD 69
Query: 232 --DSHKAQIQFALER-GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIE 287
D A R G P + +L ++D V CL+ A L
Sbjct: 70 ATDGSPELAAEASRRLGRPVRTMLF--HQLDAID-AYDAVWAHACLLHVPRDELADVLKL 126
Query: 288 VDRLLRPGGYLVISGPPVQWPKQDK 312
+ R L+PGG S + +DK
Sbjct: 127 IWRALKPGGLFYASYKSGEGEGRDK 151
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 22/140 (15%)
Query: 203 TALDMGCGVASFGGSMLSENILTLSFAPR------DSHKAQIQFALER----GIPAFVAM 252
+ CG +L+ L S P D + A + + +
Sbjct: 121 VVASVPCGW---MSELLA---LDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITL 174
Query: 253 LG--TRRLPFPAFSFDIVHCSRCLI--PFTAYNATYLIEVDRLLRPGGYLVISG-PPVQW 307
+L +D++ + I P A + L+PGG LV S P
Sbjct: 175 HRQDAWKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPA 233
Query: 308 PKQDKEWADLQAVARALCYE 327
D W L +
Sbjct: 234 LSPDSPWDMQAIDPHDLQLQ 253
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRR 257
ALD G G+ ++L++ T + K ++ A + F+
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLL--EPVKHMLEEAKRELAGMPVGKFILA-SMET 151
Query: 258 LPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWAD 316
P ++D++ I T A + + L P GY+ + + D
Sbjct: 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKED 211
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 25/115 (21%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALERGIPAFV---- 250
+D CG G T + D K+ ++ A + A +
Sbjct: 58 LPLIDFACG----NG------TQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRL 107
Query: 251 --AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVIS 301
++ + + D R + LL G + +
Sbjct: 108 LDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLI 162
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 19/168 (11%)
Query: 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERGI 246
+ + + L AL GCG ++ ++ L + KA +
Sbjct: 56 IVHLVDTSSLPLGRALVPGCG-GGHDVVAMASPERFVVGLDISESALAKANETYGSSPKA 114
Query: 247 PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVI----- 300
F + P FD++ + + LL+P G L+
Sbjct: 115 EYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174
Query: 301 ----SGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIWKKPVGE 344
GPP + + + V + ++ ++V+ N G+
Sbjct: 175 TDHVGGPPYKVDV-----STFEEVLVPIGFKAVSVEENPHAIPTRKGK 217
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 21/111 (18%)
Query: 202 RTALDMGCGVASFGGSMLSENILTLSFAPR-------DSHKAQIQFALER--GIPAFVAM 252
L++GC G T AP D I A +R
Sbjct: 53 SNGLEIGCA----AG------AFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWA 102
Query: 253 LGTRRLPFPAFSFDIVHCSRCL--IPFTAYNATYLIEVDRLLRPGGYLVIS 301
A FD++ + L + T + + ++L PGG+LV
Sbjct: 103 ATDILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFG 153
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 5e-04
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 26/153 (16%)
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR------- 231
+Y + L Q + G LD+GCG G LT A
Sbjct: 38 KHSFVWQYGEDLLQLLNPQPG--EFILDLGCG----TGQ------LTEKIAQSGAEVLGT 85
Query: 232 DSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRL 291
D+ I+ A + + R D V + L A + + +
Sbjct: 86 DNAATMIEKARQNYPHLHFDVADARNFRVDK-PLDAVFSNAMLHWVKEPEAA-IASIHQA 143
Query: 292 LRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324
L+ GG V ++ + L+A+ AL
Sbjct: 144 LKSGGRFV-----AEFGGKGNIKYILEALYNAL 171
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 5e-04
Identities = 22/164 (13%), Positives = 38/164 (23%), Gaps = 41/164 (25%)
Query: 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR----------DSHKA 236
+ +Y G + +D+GCG G TL A D
Sbjct: 26 YKMIDEYHD---GERKLLVDVGCG----PG------TATLQMAQELKPFEQIIGSDLSAT 72
Query: 237 QIQFALERGIPAFVAMLGTR-------------RLPFPAFSFDIVHCSRCLIPFTAYNAT 283
I+ A + D++ C F
Sbjct: 73 MIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFD--FEK 130
Query: 284 YLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327
+ LR G + I G ++ + + + Y
Sbjct: 131 FQRSAYANLRKDGTIAIWG---YADPIFPDYPEFDDLMIEVPYG 171
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 7e-04
Identities = 51/359 (14%), Positives = 99/359 (27%), Gaps = 115/359 (32%)
Query: 276 PFTAYNATYLIEVDRL------LRPGGYLVI-----SGPPVQWPKQDKEWADLQA-VARA 323
F YN + L +L LRP ++I SG K W + V +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------KTW--VALDVCLS 173
Query: 324 LCYELIAVDGNTVIWKKPVG-----ESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSG 378
Y++ + W + E+ L + ++ DPN+
Sbjct: 174 --YKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQI-----DPNW--------TSRS 217
Query: 379 TSSVKGEYAVGTIPKWPQRLTKAPS--RAL-VMKNGYDVFEADSRRWRRRVAYYKNTLNV 435
S + + +I +RL K+ L V+ +V + N N+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---NV-------QNAKAW---NAFNL 264
Query: 436 K---LGTPAIRNIMD-----------MNAFFGG---------FAAALTSDPVWVMNVVP- 471
L T + + D ++ L P +P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP----QDLPR 320
Query: 472 -ARKSSTLSVIYDRGLIG-VYHDWCEPFSTYPR-TYD----LIHVSGIESLIKNPGSNKN 524
++ + +I D + + D +I S + L P +
Sbjct: 321 EVLTTNPRRL----SIIAESIRDGLATWDNWKHVNCDKLTTIIESS-LNVL--EPAEYRK 373
Query: 525 SCSLVDLMVEMDRMLRPEGTVVV-------RDSPEVIDKVSRIANTVRW----TAAVHD 572
L V P + + D V++K+ + + + T ++
Sbjct: 374 --MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 20/151 (13%), Positives = 38/151 (25%), Gaps = 25/151 (16%)
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSH---- 234
+ DK + + I T ++ L +G G +LS+ + + +
Sbjct: 32 MQEFMDKKLPGIIGRIGDTKSEIK-ILSIGGGAGEIDLQILSK--VQAQYPGVCINNEVV 88
Query: 235 --------KAQIQFALERGIPA---------FVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277
K + A + +D +H + L
Sbjct: 89 EPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV 148
Query: 278 TAYNATYLIEVDRLLRPGGYLVISGPPVQWP 308
AT L LL ++I
Sbjct: 149 KDIPAT-LKFFHSLLGTNAKMLIIVVSGSSG 178
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 7e-04
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 14/107 (13%)
Query: 203 TALDMGCGV-------ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT 255
L + G AS G + + + + KA+ Q A E+G+
Sbjct: 32 KILCLAEGEGRNACFLASLGYEVTA-----VDQSSVGLAKAK-QLAQEKGVKITTVQSNL 85
Query: 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302
A +++ + C +P ++ +V + L+PGG ++ G
Sbjct: 86 ADFDIVADAWEGIVSIFCHLP-SSLRQQLYPKVYQGLKPGGVFILEG 131
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 29/132 (21%)
Query: 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPR----------DS 233
D Y+ L + + +D GCG L L P DS
Sbjct: 7 DDYVSFLVNTVWKITKPVH-IVDYGCGYGY----------LGLVLMPLLPEGSKYTGIDS 55
Query: 234 HKAQIQFALER----GIPA-FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEV 288
+ + A E + F+ + +DI C L+ T L ++
Sbjct: 56 GETLLAEARELFRLLPYDSEFLEG-DATEIELND-KYDIAICHAFLLHMTTPETM-LQKM 112
Query: 289 DRLLRPGGYLVI 300
++ GG ++
Sbjct: 113 IHSVKKGGKIIC 124
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 595 | |||
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.64 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.64 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.63 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.62 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.61 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.61 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.6 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.6 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.59 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.59 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.58 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.58 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.57 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.56 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.55 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.55 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.54 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.53 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.53 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.53 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.52 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.52 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.52 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.52 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.52 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.51 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.51 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.51 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.51 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.5 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.5 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.5 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.49 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.49 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.49 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.49 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.49 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.48 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.48 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.47 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.47 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.47 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.47 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.46 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.46 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.46 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.46 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.46 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.45 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.45 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.45 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.44 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.44 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.42 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.42 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.41 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.4 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.39 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.38 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.38 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.37 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.37 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.37 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.37 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.37 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.36 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.36 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.35 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.35 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.35 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.34 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.34 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.34 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.34 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.33 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.31 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.31 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.3 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.29 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.29 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.29 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.29 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.28 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.28 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.27 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.26 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.25 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.25 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.24 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.23 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.23 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.23 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.23 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.22 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.22 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.22 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.21 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.21 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.21 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.2 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.2 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.2 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.2 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.2 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.2 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.2 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.19 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.18 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.18 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.17 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.17 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.17 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.17 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.17 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.16 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.16 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.15 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.15 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.15 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.15 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.15 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.15 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.14 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.14 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.13 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.13 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.13 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.13 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.12 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.12 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.11 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.11 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.11 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.1 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.1 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.09 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.09 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.09 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.09 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.09 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.09 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.08 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.08 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.07 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.07 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.06 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.05 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.05 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.05 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.05 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.05 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.05 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.03 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.02 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.02 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.02 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.01 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.01 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.01 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.01 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.01 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.99 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.99 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.98 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.98 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.98 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.97 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.96 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.96 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.95 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.95 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.95 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.94 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.94 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.93 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.93 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.93 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.91 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.91 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.9 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.9 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.89 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.89 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.89 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.88 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.88 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.87 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.87 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.86 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.85 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.85 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.85 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.84 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.83 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.83 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.82 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.82 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.82 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.81 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.81 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.81 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.8 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.8 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.79 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.79 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.77 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.77 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.77 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.76 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.74 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.74 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.73 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.72 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.72 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.71 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.7 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.69 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.68 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.67 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.65 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.64 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.64 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.62 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.62 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.61 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.61 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.55 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.55 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.54 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.53 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.5 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.48 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.44 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.44 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.41 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.33 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.29 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.29 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.29 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.28 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.26 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.26 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.22 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.21 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.19 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.17 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.15 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.13 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.12 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.11 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.11 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.1 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.1 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.09 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.09 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.09 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.08 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.06 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.06 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.06 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.05 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.04 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.03 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.03 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.02 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.01 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.0 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 97.99 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.98 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 97.98 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 97.97 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.97 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 97.96 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.95 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 97.95 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 97.94 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 97.94 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 97.9 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 97.89 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 97.89 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 97.88 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 97.87 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.87 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 97.86 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 97.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.85 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 97.84 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 97.83 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 97.83 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.82 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 97.82 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 97.82 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.82 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.82 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 97.82 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 97.8 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 97.8 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 97.8 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 97.8 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 97.78 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 97.77 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 97.77 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.76 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 97.76 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 97.76 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 97.75 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 97.74 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 97.74 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.74 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 97.74 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 97.73 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 97.72 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 97.72 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 97.72 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 97.72 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 97.71 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 97.71 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 97.7 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 97.7 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.7 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 97.7 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 97.67 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 97.67 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 97.67 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 97.66 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 97.66 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.66 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 97.63 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 97.63 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 97.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 97.61 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.61 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.6 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 97.58 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.57 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 97.55 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 97.54 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 97.54 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 97.53 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 97.52 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.52 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 97.51 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 97.5 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 97.47 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 97.47 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 97.46 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 97.46 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 97.46 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 97.46 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 97.45 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.44 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 97.44 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 97.42 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 97.4 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 97.4 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 97.4 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 97.4 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 97.39 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 97.38 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 97.37 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 97.37 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.36 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 97.36 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 97.35 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 97.34 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 97.34 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 97.33 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 97.32 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 97.3 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 97.29 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 97.28 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.28 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 97.27 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 97.27 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 97.27 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 97.26 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 97.25 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 97.25 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 97.24 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 97.22 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.21 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 97.21 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.2 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.2 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 97.2 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 97.19 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 97.19 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.18 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 97.18 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 97.17 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 97.17 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 97.15 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 97.14 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 97.11 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 97.1 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 97.1 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 97.08 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 97.05 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 97.05 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 97.05 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 97.05 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 97.03 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.02 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 96.96 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 96.94 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.93 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 96.93 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 96.92 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 96.9 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 96.89 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 96.87 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 96.87 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 96.87 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.85 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 96.81 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 96.81 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 96.81 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 96.8 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 96.79 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 96.76 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 96.68 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 96.68 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 96.64 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 96.63 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 96.62 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 96.6 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 96.6 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 96.59 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 96.59 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 96.58 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 96.58 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 96.53 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 96.52 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 96.52 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 96.51 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.49 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 96.47 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.45 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 96.43 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 96.42 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 96.39 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.38 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 96.34 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 96.33 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 96.32 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 96.31 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 96.23 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 96.2 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 96.18 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 96.14 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 96.12 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 96.08 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 96.06 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 96.06 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 96.04 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 96.04 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 96.02 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.0 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 95.97 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 95.97 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 95.89 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 95.89 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 95.87 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 95.86 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 95.84 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 95.81 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 95.81 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 95.77 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 95.76 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.76 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 95.72 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 95.72 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 95.68 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 95.67 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 95.66 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 95.64 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.64 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 95.6 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 95.58 |
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=145.77 Aligned_cols=129 Identities=12% Similarity=0.067 Sum_probs=109.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-cC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AY 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d 280 (595)
.+|||+|||+|.++..|++++. .++++|+++.+++.|+++..++.+.+.++..+++++++||+|+|..+++|+. ++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 3899999999999999999854 7888999999999999998889999999999999999999999999999886 47
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCCCCCCC---------CchhHHHHHHHHHHcCcEEEEeec
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPPVQWPK---------QDKEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~~~~~~---------~~~~w~~l~~la~~~~w~~v~~~~ 333 (595)
...+|.++.++|||||+++++.+...... .......+.+++++.||+.+....
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 78999999999999999999886332110 011256688999999999987643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-16 Score=158.82 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=92.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~s 264 (595)
.+++.|.+..+. ..+|||||||+|.++..|++++. .++++|+|+.|++.|++ ..++.+.+++++.+|+++++
T Consensus 28 ~l~~~l~~~~~~----~~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~-~~~v~~~~~~~e~~~~~~~s 99 (257)
T 4hg2_A 28 ALFRWLGEVAPA----RGDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALR-HPRVTYAVAPAEDTGLPPAS 99 (257)
T ss_dssp HHHHHHHHHSSC----SSEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCC-CTTEEEEECCTTCCCCCSSC
T ss_pred HHHHHHHHhcCC----CCCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhh-cCCceeehhhhhhhcccCCc
Confidence 445555555432 34899999999999999998864 68899999999998865 35789999999999999999
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
||+|+|..++ ||. +...++.|+.|+|||||.|++...
T Consensus 100 fD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 100 VDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp EEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999999999 666 678999999999999999999864
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-15 Score=145.67 Aligned_cols=126 Identities=13% Similarity=0.058 Sum_probs=104.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
.+|||||||+|.++..|++.+. .++++|+++.+++.|+++.. ++.+.+.++..+ +++++||+|+|..+++|+. +
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~-~ 118 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID-D 118 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-S
T ss_pred CcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-C
Confidence 3799999999999999998864 68899999999999998865 688888888877 5778999999999998886 7
Q ss_pred HHHHHHHHH-hhcCCCcEEEEEcCCCCCC------------C--------------CchhHHHHHHHHHHcCcEEEEee
Q 007645 281 NATYLIEVD-RLLRPGGYLVISGPPVQWP------------K--------------QDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 281 ~~~~L~Ei~-RvLRPGG~lvls~p~~~~~------------~--------------~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
+..+|.++. |+|||||++++++|..... . ....-..+.+++++.+|+.+...
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 899999999 9999999999998743210 0 01124468888999999988664
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-16 Score=152.48 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=122.7
Q ss_pred cccccccCCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH
Q 007645 160 QGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ 239 (595)
Q Consensus 160 q~w~~~e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~ 239 (595)
+.|......+-...++...+......++..+.+.+.... ..+|||||||+|.++..|++++ ...++++|+++.+++
T Consensus 55 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~ 130 (254)
T 1xtp_A 55 EYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHG--TSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLE 130 (254)
T ss_dssp HHHHTSCSSHHHHTTTCGGGHHHHHHHHHHHHHTSTTCC--CSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHH
T ss_pred hHHhcCCccccceecCcCccCHHHHHHHHHHHHhhcccC--CCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHH
Confidence 334443333333333333333444455566666665443 3499999999999999999875 336889999999999
Q ss_pred HHHHcC---CCeEEEEcccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC------
Q 007645 240 FALERG---IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPPVQWPK------ 309 (595)
Q Consensus 240 ~A~erg---~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~------ 309 (595)
.|+++. .++.+.+.+...+++++++||+|+|..+++|+. ++...+|.++.|+|||||++++.++......
T Consensus 131 ~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 210 (254)
T 1xtp_A 131 EAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKE 210 (254)
T ss_dssp HHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETT
T ss_pred HHHHHhccCCceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceeccc
Confidence 999885 357888889989999999999999999998885 2567999999999999999999885211100
Q ss_pred -C--chhHHHHHHHHHHcCcEEEEee
Q 007645 310 -Q--DKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 310 -~--~~~w~~l~~la~~~~w~~v~~~ 332 (595)
. ...-..+.+++++.+|+.+...
T Consensus 211 ~~~~~~~~~~~~~~l~~aGf~~~~~~ 236 (254)
T 1xtp_A 211 DSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp TTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred CCcccCCHHHHHHHHHHCCCEEEEee
Confidence 0 0113568889999999887653
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-15 Score=147.39 Aligned_cols=111 Identities=22% Similarity=0.312 Sum_probs=93.8
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfp 261 (595)
++.+.+.+....+. +|||||||+|.++..|++++. .++++|+|+.+++.|+++ + .++.+.+.|+..+|++
T Consensus 26 ~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 26 LAKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT 100 (260)
T ss_dssp HHHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC
T ss_pred HHHHHHHhCCCCCC--EEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCC
Confidence 34455555554444 999999999999999998853 889999999999998876 3 3588899999999999
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++||+|+|..+++|+. ++..+|.++.|+|||||+|+++++
T Consensus 101 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEhhhhHhcC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 99999999999998876 889999999999999999999754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=147.04 Aligned_cols=130 Identities=25% Similarity=0.421 Sum_probs=105.2
Q ss_pred eeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----
Q 007645 169 YFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---- 244 (595)
Q Consensus 169 ~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---- 244 (595)
||..+.....+........+.+.+.+....+. +|||||||+|.++..++++. ...++++|+|+.+++.|+++
T Consensus 32 y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~ 107 (273)
T 3bus_A 32 YWEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAA 107 (273)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHSCCCTTC--EEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHT
T ss_pred ecCCCccccCHHHHHHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhc
Confidence 44433332334444556677777777665544 99999999999999998862 35889999999999998876
Q ss_pred CC--CeEEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 245 GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 245 g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++ ++.+...|...+|+++++||+|++..+++|+. +...+|.++.|+|||||++++.++
T Consensus 108 ~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 108 GLANRVTFSYADAMDLPFEDASFDAVWALESLHHMP-DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSS-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCcceEEEECccccCCCCCCCccEEEEechhhhCC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 43 48889999999999999999999999998875 789999999999999999999875
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-15 Score=145.40 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=113.9
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEccccc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRR 257 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~ 257 (595)
.......+.+.+.+....+. +|||+|||+|.++..++++. ...++++|+++.+++.|+++. .++.+.+.|...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 113 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENS--KVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILT 113 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTC--EEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT
T ss_pred cchHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc
Confidence 34455566676766655544 99999999999999999872 347899999999999999986 568899999999
Q ss_pred CCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcCCCCC----CCC-----------chhHHHHHHHH
Q 007645 258 LPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPPVQW----PKQ-----------DKEWADLQAVA 321 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~~----~~~-----------~~~w~~l~~la 321 (595)
+|+++++||+|+|..+++|+. .+...++.++.|+|||||++++.++.... ... ...-..+.+++
T Consensus 114 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 114 KEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADIL 193 (266)
T ss_dssp CCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred CCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 999999999999999998883 36789999999999999999998752211 100 00123466777
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
++.+|+.+..
T Consensus 194 ~~~Gf~~~~~ 203 (266)
T 3ujc_A 194 TACNFKNVVS 203 (266)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 7778877644
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-15 Score=141.72 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=103.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
.+|||+|||+|.++..|++++. .++++|+++.+++.|+++.. ++.+...|+..++++ ++||+|+|..+++|+. +
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~-~ 121 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT-D 121 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC-H
T ss_pred CeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCC-h
Confidence 4899999999999999999853 78899999999999999866 678889999999988 9999999999998876 5
Q ss_pred HHH--HHHHHHhhcCCCcEEEEEcCCCCCCCCc------------------------hhHHHHHHHHHHcCcEEEEeecc
Q 007645 281 NAT--YLIEVDRLLRPGGYLVISGPPVQWPKQD------------------------KEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 281 ~~~--~L~Ei~RvLRPGG~lvls~p~~~~~~~~------------------------~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
... +|.++.|+|||||++++.++...-.... ..-..+.+++++.||+++.....
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 122 DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLN 201 (220)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECS
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeecc
Confidence 555 9999999999999999997532110000 01245778889999988766544
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.1e-15 Score=143.65 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=115.3
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--CCCeEEEEcccccCCCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--GIPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--g~~~~~~~~d~~~LPfpd~ 263 (595)
+++.+.+.++ . ..+|||+|||+|.++..+++++. .++++|+++.+++.|+++ ..++.+.+.|...++++++
T Consensus 43 ~~~~l~~~~~--~--~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 115 (242)
T 3l8d_A 43 IIPFFEQYVK--K--EAEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENE 115 (242)
T ss_dssp HHHHHHHHSC--T--TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTT
T ss_pred HHHHHHHHcC--C--CCeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCC
Confidence 3444555543 2 34899999999999999999854 788999999999999988 4568899999999999999
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc---------------hhHHHHHHHHHHcCcEE
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD---------------KEWADLQAVARALCYEL 328 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~---------------~~w~~l~~la~~~~w~~ 328 (595)
+||+|+|..+++|+. ++..++.++.++|||||+++++++........ ..-..+.+++++.+|+.
T Consensus 116 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 194 (242)
T 3l8d_A 116 QFEAIMAINSLEWTE-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKV 194 (242)
T ss_dssp CEEEEEEESCTTSSS-CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEE
T ss_pred CccEEEEcChHhhcc-CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEE
Confidence 999999999998885 88899999999999999999987532211111 11245888999999999
Q ss_pred EEeecceeEeeccCCc
Q 007645 329 IAVDGNTVIWKKPVGE 344 (595)
Q Consensus 329 v~~~~~~~iw~K~~~~ 344 (595)
+... .+|......
T Consensus 195 ~~~~---~~~~~~~~~ 207 (242)
T 3l8d_A 195 VDGI---GVYKRGVNE 207 (242)
T ss_dssp EEEE---EEECTTCCH
T ss_pred EEee---cccccCccH
Confidence 8653 345444433
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-15 Score=145.39 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=95.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----------------CCCeEEEEcccccCCCCC-C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----------------GIPAFVAMLGTRRLPFPA-F 263 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----------------g~~~~~~~~d~~~LPfpd-~ 263 (595)
.+|||+|||+|..+..|++++. .++++|+|+.|++.|+++ ..++.+.++|+..+++++ +
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 4899999999999999999864 788999999999999876 246789999999999876 8
Q ss_pred ceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCC-CCc----hhHHHHHHHHHHcCcEEEEe
Q 007645 264 SFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWP-KQD----KEWADLQAVARALCYELIAV 331 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~-~~~----~~w~~l~~la~~~~w~~v~~ 331 (595)
+||+|++..+++|+.. +...++.++.|+|||||++++.+...... ... ..-+++.++++. +|+++..
T Consensus 101 ~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~ 173 (203)
T 1pjz_A 101 HCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKV 173 (203)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEE
T ss_pred CEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEe
Confidence 9999999999988762 33578999999999999855443211000 000 113456666666 7876544
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=146.75 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=111.6
Q ss_pred ccHHHHHHHHHhhc----cccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CC--CeE
Q 007645 181 DGADKYIDKLKQYI----PITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GI--PAF 249 (595)
Q Consensus 181 ~~a~~yi~~L~~~l----~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~--~~~ 249 (595)
......++.+.+.+ ....+ .+|||||||+|.++..|++. + ..++++|+++.+++.|+++ +. ++.
T Consensus 61 ~~~~~~~~~l~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~ 135 (297)
T 2o57_A 61 EASLRTDEWLASELAMTGVLQRQ--AKGLDLGAGYGGAARFLVRKFG---VSIDCLNIAPVQNKRNEEYNNQAGLADNIT 135 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTT--CEEEEETCTTSHHHHHHHHHHC---CEEEEEESCHHHHHHHHHHHHHHTCTTTEE
T ss_pred HHHHHHHHHHHHHhhhccCCCCC--CEEEEeCCCCCHHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceE
Confidence 33445566666666 44443 49999999999999999987 4 3789999999999998875 33 588
Q ss_pred EEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCch---------------hH
Q 007645 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK---------------EW 314 (595)
Q Consensus 250 ~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~---------------~w 314 (595)
+...|...+|+++++||+|++..+++|+. +...+|.++.|+|||||+++++++......... .-
T Consensus 136 ~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (297)
T 2o57_A 136 VKYGSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSL 214 (297)
T ss_dssp EEECCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCH
T ss_pred EEEcCcccCCCCCCCEeEEEecchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCH
Confidence 99999999999999999999999998986 689999999999999999999876221111110 12
Q ss_pred HHHHHHHHHcCcEEEEe
Q 007645 315 ADLQAVARALCYELIAV 331 (595)
Q Consensus 315 ~~l~~la~~~~w~~v~~ 331 (595)
..+.+++++.+|+.+..
T Consensus 215 ~~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 215 GLYRSLAKECGLVTLRT 231 (297)
T ss_dssp HHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHCCCeEEEE
Confidence 23566777788877654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=143.24 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=95.9
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCCCCce
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfpd~sF 265 (595)
..+.+.++...+ .+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++. .++.+...|+..+++++++|
T Consensus 34 ~~l~~~~~~~~~--~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~f 109 (253)
T 3g5l_A 34 HELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAY 109 (253)
T ss_dssp HHHHTTCCCCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCE
T ss_pred HHHHHhhhccCC--CEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCe
Confidence 345556654443 49999999999999999998653 7889999999999999885 46889999999999999999
Q ss_pred eEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 266 DIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 266 DlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+|+|..+++|+ ++...+|.++.|+|||||+++++.+
T Consensus 110 D~v~~~~~l~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 110 NVVLSSLALHYI-ASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp EEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEchhhhhh-hhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999999999887 4889999999999999999999854
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=144.11 Aligned_cols=116 Identities=17% Similarity=0.170 Sum_probs=98.0
Q ss_pred cHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccc
Q 007645 182 GADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGT 255 (595)
Q Consensus 182 ~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~ 255 (595)
.....++.+.+.+....+. +|||||||+|.++..|++.. ...++++|+++.+++.|+++ ++ ++.+.+.|+
T Consensus 20 ~~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~ 95 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA 95 (256)
T ss_dssp CCHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC
T ss_pred CCHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh
Confidence 3456677777777665544 99999999999999999873 34778999999999998765 43 488999999
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+++ +++||+|+|..+++|+. +...+|.++.|+|||||++++.++
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HhCCc-CCCCCEEEECCChHhcC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence 99888 88999999999998876 789999999999999999999876
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=139.36 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=110.9
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~ 263 (595)
.+.+.+....+. +|||+|||+|.++..+++.+.....++++|+++.+++.|+++ +. ++.+...|...++++++
T Consensus 28 ~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 28 KVLKEFGLKEGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHTCCTTC--EEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHhCCCCCC--EEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 344445444444 899999999999999998852335889999999999999876 33 58899999999999999
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC------CchhHHHHHHHHHHcCcEEEEe
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK------QDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~------~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+||+|+++.+++|+. +...++.++.|+|||||++++++....... .......+.+++++.+|+.+..
T Consensus 106 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 106 TVDFIFMAFTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp CEEEEEEESCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred CeeEEEeehhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 999999999998885 889999999999999999999875221111 1112466888999999998765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=141.39 Aligned_cols=143 Identities=19% Similarity=0.203 Sum_probs=110.6
Q ss_pred HHHHHHHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccc
Q 007645 183 ADKYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGT 255 (595)
Q Consensus 183 a~~yi~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~ 255 (595)
.......+.+.+. ... ..+|||||||+|.++..+++. ....++++|+++.+++.|+++ ++ ++.+.+.|.
T Consensus 30 ~~~~~~~~l~~l~~~~~--~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 30 SPEVTLKALSFIDNLTE--KSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp CHHHHHHHHTTCCCCCT--TCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CHHHHHHHHHhcccCCC--CCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 3455556666665 333 459999999999999999988 234789999999999999876 43 388999999
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCch----hH----------HHHHHHH
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK----EW----------ADLQAVA 321 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~----~w----------~~l~~la 321 (595)
..+|+++++||+|+|..+++|+ +...++.++.++|||||+++++++......... .| ..+.+++
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKI 183 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHH
T ss_pred hhCCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 9999999999999999999887 688999999999999999999876311111111 13 3467788
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
++.||+.+..
T Consensus 184 ~~aGf~~v~~ 193 (267)
T 3kkz_A 184 HKAGYLPVAT 193 (267)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCEEEEE
Confidence 8888887743
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-14 Score=139.05 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=92.6
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCCCCc
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfpd~s 264 (595)
+.+.+....+. +|||+|||+|.++..+++.+. .++++|+++.+++.|+++ + .++.+...+...+|+++++
T Consensus 13 ~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 87 (239)
T 1xxl_A 13 MIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS 87 (239)
T ss_dssp HHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred HHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCc
Confidence 34444455444 899999999999999998853 788999999999988765 4 3588889999999999999
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
||+|+|..+++|+. +...++.++.|+|||||++++.++
T Consensus 88 fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 88 FDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp EEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEECCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999999998886 889999999999999999999865
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=146.49 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=85.3
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|+++ ......++++|+|+.|++.|+++ + .++.+.++|+..+|++ .||+|+|+.+
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~--~~d~v~~~~~ 148 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 148 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC--SEEEEEEESC
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc--ccccceeeee
Confidence 448999999999999999886 23456899999999999999876 2 3578999999988875 5999999999
Q ss_pred Cccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|+.. +...+|+++.|+|||||.|+++++
T Consensus 149 l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 149 LQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 977752 335789999999999999999875
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-14 Score=137.77 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccc
Q 007645 183 ADKYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGT 255 (595)
Q Consensus 183 a~~yi~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~ 255 (595)
.......+.+.+. ...+ .+|||+|||+|.++..+++... ..++++|+++.+++.|+++ ++. +.+.+.|.
T Consensus 30 ~~~~~~~~l~~l~~~~~~--~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 105 (257)
T 3f4k_A 30 SPEATRKAVSFINELTDD--AKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105 (257)
T ss_dssp CHHHHHHHHTTSCCCCTT--CEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CHHHHHHHHHHHhcCCCC--CeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 3455556666664 3333 4899999999999999999853 2889999999999998776 433 88999999
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc----hhH----------HHHHHHH
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD----KEW----------ADLQAVA 321 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~----~~w----------~~l~~la 321 (595)
..+|+++++||+|+|..+++|+ +...++.++.|+|||||+++++++...-.... ..| ..+.+++
T Consensus 106 ~~~~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 183 (257)
T 3f4k_A 106 DNLPFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKM 183 (257)
T ss_dssp TSCSSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHH
T ss_pred hhCCCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 9999999999999999999887 68899999999999999999998521111111 012 3467788
Q ss_pred HHcCcEEEE
Q 007645 322 RALCYELIA 330 (595)
Q Consensus 322 ~~~~w~~v~ 330 (595)
++.+|+.+.
T Consensus 184 ~~aGf~~v~ 192 (257)
T 3f4k_A 184 ERAGYTPTA 192 (257)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCeEEE
Confidence 888888765
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-14 Score=140.27 Aligned_cols=142 Identities=20% Similarity=0.218 Sum_probs=108.0
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC--CC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL--PF 260 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L--Pf 260 (595)
.....+.+...++... ...+|||||||+|.++..|++.+. .++++|+|+.+++.|+++ +.+...+...+ |+
T Consensus 25 ~~~~~~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~~~ 97 (240)
T 3dli_A 25 RELVKARLRRYIPYFK-GCRRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK---FNVVKSDAIEYLKSL 97 (240)
T ss_dssp HHHHHHHHGGGGGGTT-TCSCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT---SEEECSCHHHHHHTS
T ss_pred HHHHHHHHHHHHhhhc-CCCeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh---cceeeccHHHHhhhc
Confidence 3445555555554322 235899999999999999998855 578899999999999987 67777777665 88
Q ss_pred CCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCC----------C--CchhHHHHHHHHHHcCcE
Q 007645 261 PAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWP----------K--QDKEWADLQAVARALCYE 327 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~----------~--~~~~w~~l~~la~~~~w~ 327 (595)
++++||+|+|..+++|+.. +...++.++.|+|||||++++.++..... . ....-..+.+++++.+|+
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~ 177 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFR 177 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCe
Confidence 8999999999999988862 34799999999999999999998743211 0 011135678888888988
Q ss_pred EEEe
Q 007645 328 LIAV 331 (595)
Q Consensus 328 ~v~~ 331 (595)
.+..
T Consensus 178 ~~~~ 181 (240)
T 3dli_A 178 DVKI 181 (240)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-14 Score=135.72 Aligned_cols=114 Identities=19% Similarity=0.244 Sum_probs=96.6
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~ 257 (595)
....+.+.+.+.... .+|||+|||+|.++..|+++ ....++++|+++.+++.|+++ + .++.+.+.|...
T Consensus 30 ~~~~~~~~~~~~~~~---~~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 30 PIIAENIINRFGITA---GTCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHHCCCE---EEEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHHhcCCCC---CEEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 344555666555432 28999999999999999987 456899999999999999877 3 358899999999
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++++||+|+|..+++|+ .+...++.++.|+|||||++++.++
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFW-EDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGC-SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCcccccEEEECchHhhc-cCHHHHHHHHHHhCCCCCEEEEEec
Confidence 99999999999999999887 4889999999999999999999864
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.6e-14 Score=144.77 Aligned_cols=129 Identities=15% Similarity=0.088 Sum_probs=104.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCC-CCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLP-FPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LP-fpd~sFDlV~~s~v 273 (595)
..+|||||||+|.++..|++.+. .++++|+++.+++.|+++ + .++.+...|...++ +++++||+|+|..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence 45899999999999999999854 788999999999999876 3 34788999998887 78899999999999
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCC-------------------C--------CCchhHHHHHHHHHHcCc
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQW-------------------P--------KQDKEWADLQAVARALCY 326 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~-------------------~--------~~~~~w~~l~~la~~~~w 326 (595)
++|+. ++..+|.++.++|||||++++..+.... . .....-..+.+++++.||
T Consensus 146 l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 224 (285)
T 4htf_A 146 LEWVA-DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGW 224 (285)
T ss_dssp GGGCS-CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTC
T ss_pred hhccc-CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCC
Confidence 98875 8899999999999999999998742100 0 001123568889999999
Q ss_pred EEEEeec
Q 007645 327 ELIAVDG 333 (595)
Q Consensus 327 ~~v~~~~ 333 (595)
+++....
T Consensus 225 ~v~~~~~ 231 (285)
T 4htf_A 225 QIMGKTG 231 (285)
T ss_dssp EEEEEEE
T ss_pred ceeeeee
Confidence 9886643
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=133.44 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=86.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-CCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-IPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
.+|||+|||+|.++..|++++. .++++|+++.+++.|++.+ .++.+...|...+ +++++||+|+|+.+++|+.+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~ 123 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDD 123 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHH
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHH
Confidence 3899999999999999998843 7889999999999999887 5688899998887 788999999999999888622
Q ss_pred -HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 281 -NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 281 -~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+|.++.++|||||.++++++
T Consensus 124 ~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 124 RFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 37899999999999999999875
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=137.34 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=95.6
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCce
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSF 265 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sF 265 (595)
....+.+.+....+ .+|||+|||+|.++..++++. ....++++|+++.+++.|+++..++.+...|...++ ++++|
T Consensus 21 ~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~f 96 (259)
T 2p35_A 21 PARDLLAQVPLERV--LNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKA 96 (259)
T ss_dssp HHHHHHTTCCCSCC--SSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCE
T ss_pred HHHHHHHhcCCCCC--CEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCc
Confidence 34456666655443 489999999999999998872 123688899999999999998778899999999888 78999
Q ss_pred eEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 266 DIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 266 DlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+|+|+.+++|+. +...++.++.++|||||+++++++
T Consensus 97 D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 97 DLLYANAVFQWVP-DHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEEEESCGGGST-THHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CEEEEeCchhhCC-CHHHHHHHHHHhcCCCeEEEEEeC
Confidence 9999999997764 889999999999999999999986
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-14 Score=136.48 Aligned_cols=110 Identities=25% Similarity=0.286 Sum_probs=94.0
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--CeEEEEcccccCCCCCCcee
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~~~~~~~d~~~LPfpd~sFD 266 (595)
.+.+.++...+ .+|||+|||+|.++..+++++.. .++++|+++.+++.|+++.. ++.+...|...+++++++||
T Consensus 34 ~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD 109 (243)
T 3bkw_A 34 ALRAMLPEVGG--LRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD 109 (243)
T ss_dssp HHHHHSCCCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred HHHHhccccCC--CEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence 35555654444 48999999999999999988542 78899999999999998854 47888889988998889999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|++..+++|+. +...++.++.++|||||+++++++
T Consensus 110 ~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 110 LAYSSLALHYVE-DVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp EEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEeccccccc-hHHHHHHHHHHhcCcCcEEEEEeC
Confidence 999999998875 789999999999999999999874
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=140.04 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=103.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-----CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-----PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-----~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||||||+|.++..|++++ ...++++|+++.+++.|+++.. .+.+...++..+++++++||+|+|..+++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 4599999999999999999885 3478999999999999998743 36788889888998888999999999998
Q ss_pred ccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCC----CCC----chhHHHHHHHHHHcCcEEEEee
Q 007645 276 PFTAY-NATYLIEVDRLLRPGGYLVISGPPVQW----PKQ----DKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 276 h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~----~~~----~~~w~~l~~la~~~~w~~v~~~ 332 (595)
|+.+. ...++.++.++|||||+++++++.... ... ...-..+.+++++.+|+.+...
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 88621 348999999999999999998752111 000 0125568889999999887664
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=131.99 Aligned_cols=124 Identities=14% Similarity=0.083 Sum_probs=100.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..+++.+ ..++++|+++.+++.|+++..++.+...+ +++++++||+|++..+++|+. +
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~~~~~~~~D~v~~~~~l~~~~-~ 90 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKFDSVITLSDP---KEIPDNSVDFILFANSFHDMD-D 90 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHCTTSEEESSG---GGSCTTCEEEEEEESCSTTCS-C
T ss_pred CCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhCCCcEEEeCC---CCCCCCceEEEEEccchhccc-C
Confidence 3489999999999999999885 28899999999999999987778888777 788889999999999998885 8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc------hhHHHHHHHHHHcCcEEEEeec
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPPVQWPKQD------KEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~------~~w~~l~~la~~~~w~~v~~~~ 333 (595)
...++.++.|+|||||++++.+......... ..-+.+.++++ +|+.+....
T Consensus 91 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~ 147 (170)
T 3i9f_A 91 KQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN 147 (170)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC
Confidence 8999999999999999999987532211111 11345777776 898876543
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.8e-14 Score=140.27 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=92.6
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEE
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIV 268 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV 268 (595)
.+.+.+....+ .+|||||||+|.++..|++.+ ..++++|+|+.+++.|+++..++.+.+.|+..+|+ +++||+|
T Consensus 48 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v 121 (279)
T 3ccf_A 48 DLLQLLNPQPG--EFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAV 121 (279)
T ss_dssp HHHHHHCCCTT--CEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEE
T ss_pred HHHHHhCCCCC--CEEEEecCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEE
Confidence 34444444443 489999999999999999854 47889999999999999987778889999999987 5899999
Q ss_pred EEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 269 HCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 269 ~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
+|..+++|+. ++..++.++.|+|||||++++..+.
T Consensus 122 ~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 122 FSNAMLHWVK-EPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp EEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcchhhhCc-CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 9999997765 8899999999999999999998763
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=136.71 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=87.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcC-CCcccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFT- 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~-vL~h~~- 278 (595)
..+|||||||+|.++..|++++. .++++|+++.+++.|+++..++.+.+.|+..+++ +++||+|+|.. +++|+.
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEECTTGGGGSCH
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEEcCchhhhcCC
Confidence 35899999999999999999854 6889999999999999998788999999999888 78999999998 998875
Q ss_pred -cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 279 -AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 279 -~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++...+|.++.++|||||+|++..
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 355688999999999999999964
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.3e-14 Score=140.20 Aligned_cols=111 Identities=16% Similarity=0.198 Sum_probs=96.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~s 264 (595)
.+.+.+.+.++...+ .+|||||||+|.++..|++.+ ..++++|+|+.+++.|+++. ++.+.+.|...+|+++++
T Consensus 21 ~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~~~~~~~ 94 (261)
T 3ege_A 21 RIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQG---LFVYAVEPSIVMRQQAVVHP-QVEWFTGYAENLALPDKS 94 (261)
T ss_dssp HHHHHHHHHHCCCTT--CEEEEETCTTSHHHHHHHTTT---CEEEEECSCHHHHHSSCCCT-TEEEECCCTTSCCSCTTC
T ss_pred HHHHHHHHHhCCCCC--CEEEEEcCcccHHHHHHHhCC---CEEEEEeCCHHHHHHHHhcc-CCEEEECchhhCCCCCCC
Confidence 466677777765444 499999999999999999864 47889999999999887776 889999999999999999
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
||+|+|..+++|+. +...++.++.|+|| ||++++.++
T Consensus 95 fD~v~~~~~l~~~~-~~~~~l~~~~~~Lk-gG~~~~~~~ 131 (261)
T 3ege_A 95 VDGVISILAIHHFS-HLEKSFQEMQRIIR-DGTIVLLTF 131 (261)
T ss_dssp BSEEEEESCGGGCS-SHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred EeEEEEcchHhhcc-CHHHHHHHHHHHhC-CcEEEEEEc
Confidence 99999999998884 88999999999999 998888775
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=155.12 Aligned_cols=147 Identities=15% Similarity=0.180 Sum_probs=113.4
Q ss_pred ccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEE---EEccc
Q 007645 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFV---AMLGT 255 (595)
Q Consensus 179 F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~---~~~d~ 255 (595)
+......+.+.+.+.+....+. +|||||||+|.++..|++++. .++++|+|+.+++.|++++.+... ...+.
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~ 162 (416)
T 4e2x_A 88 MREHFAMLARDFLATELTGPDP--FIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRTDFFEKATA 162 (416)
T ss_dssp HHHHHHHHHHHHHHTTTCSSSC--EEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEECSCCSHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCC--EEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcceeeechhhH
Confidence 3344556667777776655444 999999999999999999865 788999999999999999765432 22345
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC-------CCC----CC--chhHHHHHHHHH
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV-------QWP----KQ--DKEWADLQAVAR 322 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~-------~~~----~~--~~~w~~l~~la~ 322 (595)
..+|+++++||+|+|..+++|+. ++..+++++.|+|||||++++..|.. .+. .+ ...-..+.++++
T Consensus 163 ~~l~~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~ 241 (416)
T 4e2x_A 163 DDVRRTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQ 241 (416)
T ss_dssp HHHHHHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHH
T ss_pred hhcccCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHH
Confidence 56677789999999999999986 89999999999999999999987631 111 11 112456888999
Q ss_pred HcCcEEEEe
Q 007645 323 ALCYELIAV 331 (595)
Q Consensus 323 ~~~w~~v~~ 331 (595)
+.+|+.+..
T Consensus 242 ~aGf~~~~~ 250 (416)
T 4e2x_A 242 RCGFELVDV 250 (416)
T ss_dssp HTTEEEEEE
T ss_pred HcCCEEEEE
Confidence 999988755
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.51 E-value=8e-14 Score=134.65 Aligned_cols=127 Identities=21% Similarity=0.197 Sum_probs=102.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-c
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-A 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~ 279 (595)
..+|||+|||+|.++..|++++. .++++|+++.+++.|+++. ++.+...+...++ ++++||+|+|+.+++|+. +
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRL-GRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHH-TSCCEECCGGGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred CCcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhc-CCceEEeeeccCC-CCCcEEEEEecCchhhcCHH
Confidence 34899999999999999999854 7889999999999999874 4456677888888 789999999999998886 3
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC--------chhHHHHHHHHHHcC-cEEEEee
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGPPVQWPKQ--------DKEWADLQAVARALC-YELIAVD 332 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~--------~~~w~~l~~la~~~~-w~~v~~~ 332 (595)
+...+|.++.|+|||||+++++.+....... ...-..+.+++++.+ |+.+...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~ 180 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE 180 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence 5568999999999999999998764322111 112556888999999 9887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=135.12 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=101.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC------CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI------PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~------~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..|++.+ ..++++|+++.+++.|+++.. ++.+.+.|+..++ ++++||+|+|..+++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~ 143 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPE---RFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFC 143 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTT---EEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTT
T ss_pred CCEEEeCCCCCHHHHHHHhCC---CeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhh
Confidence 389999999999999998764 478999999999999998743 3788889988877 456999999999998
Q ss_pred ccc-cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc----hhHHHHHHHHHHcCcEEEEee
Q 007645 276 PFT-AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD----KEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 276 h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~----~~w~~l~~la~~~~w~~v~~~ 332 (595)
|+. ++...++.++.++|||||++++...+....... ..-..+.+++++.+|+.+..+
T Consensus 144 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 144 AIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp TSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence 875 356799999999999999999977533211111 124678889999999987653
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=140.45 Aligned_cols=140 Identities=14% Similarity=0.015 Sum_probs=109.1
Q ss_pred HHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 188 DKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 188 ~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
+.+.+.+. ... ..+|||+|||+|.++..|+++. ...++++|+++.+++.|+++ ++ ++.+...|+..+|+
T Consensus 106 ~~l~~~l~~~~~--~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 181 (312)
T 3vc1_A 106 EFLMDHLGQAGP--DDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF 181 (312)
T ss_dssp HHHHTTSCCCCT--TCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred HHHHHHhccCCC--CCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC
Confidence 44555555 333 3499999999999999999871 24788999999999998875 43 48899999999999
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC--Cch--------------hHHHHHHHHHHc
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK--QDK--------------EWADLQAVARAL 324 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~--~~~--------------~w~~l~~la~~~ 324 (595)
++++||+|+|..+++|+ +...++.++.|+|||||++++.++...... ... .-..+.+++++.
T Consensus 182 ~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~a 259 (312)
T 3vc1_A 182 DKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADN 259 (312)
T ss_dssp CTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTT
T ss_pred CCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHC
Confidence 99999999999999887 488999999999999999999886222111 111 123477888889
Q ss_pred CcEEEEeec
Q 007645 325 CYELIAVDG 333 (595)
Q Consensus 325 ~w~~v~~~~ 333 (595)
||+.+..+.
T Consensus 260 Gf~~~~~~~ 268 (312)
T 3vc1_A 260 RLVPHTIVD 268 (312)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEe
Confidence 998876643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=133.93 Aligned_cols=113 Identities=12% Similarity=0.115 Sum_probs=91.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC----------CeEEEEcc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI----------PAFVAMLG 254 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~----------~~~~~~~d 254 (595)
...+.+.+.+....+ .+|||+|||+|.++..|++++. ...++++|+++.+++.|+++.. ++.+...|
T Consensus 16 ~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (219)
T 3jwg_A 16 QRLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS 92 (219)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence 334555555554443 3899999999999999998753 3588999999999999988732 68888999
Q ss_pred cccCCCCCCceeEEEEcCCCcccccCH--HHHHHHHHhhcCCCcEEEEE
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~~d~--~~~L~Ei~RvLRPGG~lvls 301 (595)
+..+++++++||+|+|..+++|+. ++ ..++.++.++|||||.++.+
T Consensus 93 ~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 93 LVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp SSSCCGGGTTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccccccccCCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEc
Confidence 888888889999999999998885 33 58999999999999966554
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.3e-14 Score=135.67 Aligned_cols=111 Identities=19% Similarity=0.240 Sum_probs=91.9
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfpd 262 (595)
+...+...+.... ..+|||+|||+|.++..|++.+ ..++++|+++.+++.|+++. .++.+.+.|+..++ ++
T Consensus 39 ~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 39 HTQLLRLSLSSGA--VSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TA 112 (216)
T ss_dssp HHHHHHHHTTTSS--EEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CS
T ss_pred HHHHHHHHcccCC--CCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CC
Confidence 3344444444443 4489999999999999999884 48899999999999999874 35788999998888 67
Q ss_pred CceeEEEEcCCCcccccCH---HHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYN---ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~---~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|+.+++|+. ++ ..++.++.++|||||+++++++
T Consensus 113 ~~fD~v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp CCEEEEEEESCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccEEEEccHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 9999999999998876 44 4779999999999999999875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=136.30 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=87.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..+++++ ..++++|+|+.+++.|+++ ..++.+...|...+|+++++||+|++..+++|
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 116 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARG---YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTT---CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCEEEEeCCcCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence 4589999999999999999875 3788999999999999987 35688999999999999999999999999977
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+. +...++.++.|+|||||++++.
T Consensus 117 ~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 117 VP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp CT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred cC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 65 7889999999999999999997
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-13 Score=133.04 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=94.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d~~~LPfp 261 (595)
...+.+.+.+.. .....+|||+|||+|.++..+++.. ....++++|+++.+++.|+++.. ++.+...|...++++
T Consensus 30 ~~~~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 107 (234)
T 3dtn_A 30 DFYGVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE 107 (234)
T ss_dssp HHHHHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC
T ss_pred HHHHHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC
Confidence 344555666552 2234599999999999999999883 24588999999999999998743 688999999999887
Q ss_pred CCceeEEEEcCCCcccccCHH--HHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYNA--TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~--~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|..+++|+. +.. .++.++.|+|||||+++++++
T Consensus 108 -~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 108 -EKYDMVVSALSIHHLE-DEDKKELYKRSYSILKESGIFINADL 149 (234)
T ss_dssp -SCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCceEEEEeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 8999999999998885 443 599999999999999999874
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=131.34 Aligned_cols=129 Identities=22% Similarity=0.264 Sum_probs=104.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----C------CeEEEEcccccCCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I------PAFVAMLGTRRLPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~------~~~~~~~d~~~LPfpd~sFDlV~~ 270 (595)
..+|||+|||+|.++..+++++. .++++|+++.+++.|+++. . ++.+...+...+++++++||+|++
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 34899999999999999999854 7889999999999999863 2 367888899999999999999999
Q ss_pred cCCCcccccCHH---HHHHHHHhhcCCCcEEEEEcCCCCCCCC----------------------------------chh
Q 007645 271 SRCLIPFTAYNA---TYLIEVDRLLRPGGYLVISGPPVQWPKQ----------------------------------DKE 313 (595)
Q Consensus 271 s~vL~h~~~d~~---~~L~Ei~RvLRPGG~lvls~p~~~~~~~----------------------------------~~~ 313 (595)
..+++|+. ++. .++.++.++|||||+++++++...+... ...
T Consensus 108 ~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 108 QAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp ESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred cchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 99998886 555 8999999999999999998764332211 112
Q ss_pred HHHHHHHHHHcCcEEEEeec
Q 007645 314 WADLQAVARALCYELIAVDG 333 (595)
Q Consensus 314 w~~l~~la~~~~w~~v~~~~ 333 (595)
-+.+.+++++.||+.+....
T Consensus 187 ~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEe
Confidence 44578888888998886543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=139.24 Aligned_cols=127 Identities=12% Similarity=0.011 Sum_probs=97.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----------------------CCeEEEEcccccCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------------------IPAFVAMLGTRRLP 259 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------------------~~~~~~~~d~~~LP 259 (595)
.+|||+|||+|..+..|+++|. .++++|+|+.+++.|+++. .++.+.++|+..++
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 4899999999999999999875 7889999999999997642 45789999999998
Q ss_pred CCC-CceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCC---CCCCCC--chhHHHHHHHHHHcCcEEEEee
Q 007645 260 FPA-FSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPP---VQWPKQ--DKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 260 fpd-~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~---~~~~~~--~~~w~~l~~la~~~~w~~v~~~ 332 (595)
+++ ++||+|++..+|++++. +...++.++.|+|||||+|++.+.. ...... ...-+++.++++. +|+++..+
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence 764 89999999999988763 3468999999999999999765421 000000 0123567777766 48776554
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=132.87 Aligned_cols=98 Identities=26% Similarity=0.280 Sum_probs=87.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..+ +. ..++++|+++.+++.|+++..++.+...+...+|+++++||+|++..+++|+. +
T Consensus 37 ~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~ 110 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVE-D 110 (211)
T ss_dssp CSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-C
T ss_pred CCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-C
Confidence 458999999999999887 22 27889999999999999987778888999999999999999999999998876 8
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
+..++.++.|+|||||.+++++++
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEecC
Confidence 899999999999999999999863
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-13 Score=135.62 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGT 255 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~ 255 (595)
....++.+.+.+....+. +|||||||+|.++..+++. +. .++++|+|+.+++.|+++ + ..+.+...|.
T Consensus 49 ~~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~ 123 (287)
T 1kpg_A 49 QIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW 123 (287)
T ss_dssp HHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG
T ss_pred HHHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh
Confidence 344566667766655544 9999999999999999854 43 889999999999999876 3 2578888888
Q ss_pred ccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+| ++||+|+|..+++|+. ++...++.++.|+|||||.+++.++
T Consensus 124 ~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 169 (287)
T 1kpg_A 124 EQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 169 (287)
T ss_dssp GGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred hhCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 7766 7899999999999986 4778999999999999999999876
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-14 Score=142.13 Aligned_cols=115 Identities=22% Similarity=0.306 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAML 253 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~ 253 (595)
...+.+.+.+.+....+. +|||||||+|.++..|++++. .++++|+|+.+++.|+++. .++.+...
T Consensus 42 ~~~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 116 (293)
T 3thr_A 42 TAEYKAWLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA 116 (293)
T ss_dssp CHHHHHHHHHHHHHTTCC--EEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC
T ss_pred HHHHHHHHHHHhcccCCC--EEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeec
Confidence 345556666666555443 899999999999999999865 7889999999999998652 34677888
Q ss_pred ccccCC---CCCCceeEEEEc-CCCcccccC-------HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 254 GTRRLP---FPAFSFDIVHCS-RCLIPFTAY-------NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 254 d~~~LP---fpd~sFDlV~~s-~vL~h~~~d-------~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...++ +++++||+|+|. .+++|+. + ...++.++.|+|||||++++..+
T Consensus 117 d~~~~~~~~~~~~~fD~V~~~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 117 NWLTLDKDVPAGDGFDAVICLGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CGGGHHHHSCCTTCEEEEEECTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ChhhCccccccCCCeEEEEEcChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 888887 888999999998 8998886 5 77999999999999999999876
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=132.27 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=100.1
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCH
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN 281 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~ 281 (595)
.+|||+|||+|.++..++.+ +++|+++.+++.|+++ ++.+...+...+++++++||+|++..+++|+. ++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-~~ 118 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--GVFVLKGTAENLPLKDESFDFALMVTTICFVD-DP 118 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CH
T ss_pred CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--CCEEEEcccccCCCCCCCeeEEEEcchHhhcc-CH
Confidence 48999999999999998775 6789999999999998 56788888888999889999999999998875 78
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCC-----------------CCchhHHHHHHHHHHcCcEEEEee
Q 007645 282 ATYLIEVDRLLRPGGYLVISGPPVQWP-----------------KQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 282 ~~~L~Ei~RvLRPGG~lvls~p~~~~~-----------------~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
..+|.++.++|+|||+++++.+..... ........+.+++++.+|+.+...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999999999999999999987632110 011124568889999999887653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=133.79 Aligned_cols=116 Identities=16% Similarity=0.224 Sum_probs=94.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
..+.+.+.+.+........+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +.++.+.+.|+..++
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 97 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN 97 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC
Confidence 3444555555544322345899999999999999998854 688999999999999876 446888889998888
Q ss_pred CCCCceeEEEEcC-CCcccc--cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSR-CLIPFT--AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~-vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++ ++||+|+|.. +++|+. ++...+|.++.++|||||++++..+
T Consensus 98 ~~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 98 IN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CS-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cc-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 87 8999999998 998884 3567999999999999999999654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=136.29 Aligned_cols=114 Identities=20% Similarity=0.252 Sum_probs=94.2
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf 260 (595)
+.+.+........ ..+|||||||+|.++..++++. ....++++|+++.+++.|+++ ++ ++.+...|...+++
T Consensus 25 l~~~l~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~ 101 (276)
T 3mgg_A 25 LEKLLHHDTVYPP--GAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF 101 (276)
T ss_dssp HHHHHHTTCCCCT--TCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS
T ss_pred HHHHHhhcccCCC--CCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC
Confidence 3333443333334 3499999999999999999883 234889999999999999876 43 58889999999999
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++||+|++..+++|+. ++..++.++.++|||||++++.++
T Consensus 102 ~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 102 EDSSFDHIFVCFVLEHLQ-SPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp CTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCeeEEEEechhhhcC-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999999998876 788999999999999999999875
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-13 Score=125.82 Aligned_cols=137 Identities=15% Similarity=0.262 Sum_probs=103.3
Q ss_pred HHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCc
Q 007645 190 LKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~s 264 (595)
+.+.+....+ .+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +. ++.+...|...+++ +++
T Consensus 24 l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~ 97 (199)
T 2xvm_A 24 VLEAVKVVKP--GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ 97 (199)
T ss_dssp HHHHTTTSCS--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred HHHHhhccCC--CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence 3444544443 3899999999999999998854 788999999999998765 44 68888999988888 789
Q ss_pred eeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcCCC--CCCCC-----chhHHHHHHHHHHcCcEEEEeecc
Q 007645 265 FDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPPV--QWPKQ-----DKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 265 FDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~--~~~~~-----~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
||+|++..+++|+. ++...++.++.++|||||++++..+.. .+... ...-+.+.++++. |+++.....
T Consensus 98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYNED 173 (199)
T ss_dssp EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEECC
T ss_pred ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEeccc
Confidence 99999999998875 356799999999999999988865411 11110 1123356777765 888876544
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=137.32 Aligned_cols=99 Identities=22% Similarity=0.371 Sum_probs=88.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||||||+|.++..|++++. .++++|+++.+++.|+++.... +.+.++..+++++++||+|++..++.|+..+
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~-~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~ 130 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 130 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCC-EEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence 34899999999999999998853 7889999999999999886543 7788898999999999999999988888767
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 281 NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+|.++.++|||||.+++.++
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEeC
Confidence 89999999999999999999876
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-13 Score=128.38 Aligned_cols=135 Identities=18% Similarity=0.277 Sum_probs=105.8
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc--CCCCCCcee
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR--LPFPAFSFD 266 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~--LPfpd~sFD 266 (595)
.+.+.++ . ...+|||+|||+|.++..+++.+ ..++++|+++.+++.++++.. .+...++.. +++++++||
T Consensus 24 ~l~~~~~-~--~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 24 NLLKHIK-K--EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLD--HVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp HHHTTCC-T--TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSS--EEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHhc-c--CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--cEEEcchhhcCCCCCCCccC
Confidence 4455554 2 24589999999999999999884 478999999999999988764 567777765 678889999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC------------CCCC-----------CchhHHHHHHHHHH
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV------------QWPK-----------QDKEWADLQAVARA 323 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~------------~~~~-----------~~~~w~~l~~la~~ 323 (595)
+|++..+++|+. ++..++.++.++|+|||++++++|.. .|.. ....-..+.+++++
T Consensus 96 ~v~~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 174 (230)
T 3cc8_A 96 CVIFGDVLEHLF-DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLK 174 (230)
T ss_dssp EEEEESCGGGSS-CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHH
T ss_pred EEEECChhhhcC-CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHH
Confidence 999999998886 78899999999999999999988642 1211 11124568888888
Q ss_pred cCcEEEEee
Q 007645 324 LCYELIAVD 332 (595)
Q Consensus 324 ~~w~~v~~~ 332 (595)
.+|+.+...
T Consensus 175 ~Gf~~~~~~ 183 (230)
T 3cc8_A 175 AGYSISKVD 183 (230)
T ss_dssp TTEEEEEEE
T ss_pred cCCeEEEEE
Confidence 899877553
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.7e-13 Score=129.26 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=103.6
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC---CCCCC-c
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL---PFPAF-S 264 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L---Pfpd~-s 264 (595)
.+.+.+....+ .+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ ....+...+...+ ++..+ +
T Consensus 43 ~~~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~ 116 (227)
T 3e8s_A 43 AILLAILGRQP--ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAA-GAGEVHLASYAQLAEAKVPVGKD 116 (227)
T ss_dssp HHHHHHHHTCC--SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHT-CSSCEEECCHHHHHTTCSCCCCC
T ss_pred HHHHHhhcCCC--CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHh-cccccchhhHHhhcccccccCCC
Confidence 34444444443 4899999999999999999854 788999999999999998 4556677666555 55444 5
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC-------------------------chhHHHHHH
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ-------------------------DKEWADLQA 319 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~-------------------------~~~w~~l~~ 319 (595)
||+|+|+.+++ ..+...++.++.++|||||+++++++....... ...-..+.+
T Consensus 117 fD~v~~~~~l~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (227)
T 3e8s_A 117 YDLICANFALL--HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN 194 (227)
T ss_dssp EEEEEEESCCC--SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHH
T ss_pred ccEEEECchhh--hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHH
Confidence 99999999996 458889999999999999999999873211110 012466888
Q ss_pred HHHHcCcEEEEee
Q 007645 320 VARALCYELIAVD 332 (595)
Q Consensus 320 la~~~~w~~v~~~ 332 (595)
++++.||+.+...
T Consensus 195 ~l~~aGf~~~~~~ 207 (227)
T 3e8s_A 195 ALDMAGLRLVSLQ 207 (227)
T ss_dssp HHHHTTEEEEEEE
T ss_pred HHHHcCCeEEEEe
Confidence 9999999988653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=136.47 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=93.5
Q ss_pred cHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc
Q 007645 182 GADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG 254 (595)
Q Consensus 182 ~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d 254 (595)
.....++.+.+.+....+. +|||||||+|.++..++++ + ..++++|+|+.+++.|+++ ++ ++.+...|
T Consensus 56 a~~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 130 (302)
T 3hem_A 56 AQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYD---VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG 130 (302)
T ss_dssp HHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHC---CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCCcC--EEEEeeccCcHHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 3344566677777665554 9999999999999999987 5 4789999999999999876 44 47788888
Q ss_pred cccCCCCCCceeEEEEcCCCccccc--------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFTA--------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+ +++||+|++..+++|+++ +...++.++.|+|||||++++.+.
T Consensus 131 ~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 131 WEEF---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp GGGC---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred HHHc---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 8766 689999999999988852 226899999999999999999875
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=144.50 Aligned_cols=130 Identities=20% Similarity=0.102 Sum_probs=104.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------C----CCeEEEEcccccC------CCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------G----IPAFVAMLGTRRL------PFP 261 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g----~~~~~~~~d~~~L------Pfp 261 (595)
..+|||+|||+|.++..|++.......++++|+++.+++.|+++ | .++.+.+.|+..+ +++
T Consensus 84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~ 163 (383)
T 4fsd_A 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP 163 (383)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence 34899999999999999988622234889999999999999987 4 5789999998887 899
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCC----------------chhHHHHHHHHHHcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQ----------------DKEWADLQAVARALC 325 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~----------------~~~w~~l~~la~~~~ 325 (595)
+++||+|+++.+++|+. +...+|.++.|+|||||+|+++++....... ...+..+.+++++.+
T Consensus 164 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 242 (383)
T 4fsd_A 164 DSSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAG 242 (383)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTT
T ss_pred CCCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCC
Confidence 99999999999997775 7899999999999999999998752211100 012467888999999
Q ss_pred cEEEEe
Q 007645 326 YELIAV 331 (595)
Q Consensus 326 w~~v~~ 331 (595)
|+.+..
T Consensus 243 F~~v~~ 248 (383)
T 4fsd_A 243 FRDVRL 248 (383)
T ss_dssp CCCEEE
T ss_pred CceEEE
Confidence 986643
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.46 E-value=6.6e-13 Score=124.99 Aligned_cols=126 Identities=19% Similarity=0.161 Sum_probs=104.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEc-CCCcccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCS-RCLIPFT- 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s-~vL~h~~- 278 (595)
..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++..++.+...+...+++++++||+|++. .+++|..
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred CCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence 34899999999999999998853 788999999999999999878889999998888888999999998 6776654
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~ 333 (595)
++...++.++.++|+|||++++..+... ......+.+++++.+|+.+....
T Consensus 124 ~~~~~~l~~~~~~l~~~G~l~~~~~~~~----~~~~~~~~~~l~~~Gf~~~~~~~ 174 (195)
T 3cgg_A 124 DGREPALANIHRALGADGRAVIGFGAGR----GWVFGDFLEVAERVGLELENAFE 174 (195)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEETTS----SCCHHHHHHHHHHHTEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCCC----CcCHHHHHHHHHHcCCEEeeeec
Confidence 2446899999999999999999876322 12345688888889998876543
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=131.38 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=86.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..+++++. .++++|+++.+++.|+++ +.++.+...|...+++++++||+|+|+.++++
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 44899999999999999998865 788999999999998876 46788999999888888899999999998433
Q ss_pred cc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.. .+...++.++.++|||||++++..+
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 32 3567899999999999999999875
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=131.31 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=92.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----C------CeEEEEcc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----I------PAFVAMLG 254 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~------~~~~~~~d 254 (595)
...+.+.+.+....+. +|||+|||+|.++..|++++. ...++++|+++.+++.|+++. . ++.+.+.|
T Consensus 16 ~~~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 16 QRMNGVVAALKQSNAR--RVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHHHTTCC--EEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHHhcCCC--EEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence 3445555555544444 999999999999999998743 247899999999999998872 1 58888888
Q ss_pred cccCCCCCCceeEEEEcCCCcccccCH--HHHHHHHHhhcCCCcEEEEEc
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~~d~--~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+..+++++++||+|+|..+++|+. ++ ..++.++.++|||||.++++.
T Consensus 93 ~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 93 LTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TTSCCGGGCSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccccCCCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 877777778999999999998885 34 689999999999999776654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=136.14 Aligned_cols=116 Identities=20% Similarity=0.228 Sum_probs=95.4
Q ss_pred HHHHHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 185 KYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
.++..+.+.+. ... ..+|||||||+|.++..|++.......++++|+++.+++.|+++ +.++.+.+.|+..++
T Consensus 8 ~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~ 85 (284)
T 3gu3_A 8 DYVSFLVNTVWKITK--PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 85 (284)
T ss_dssp HHHHHHHHTTSCCCS--CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHHHHhccCC--CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC
Confidence 45555555543 333 34999999999999999998733235889999999999999876 346888999999988
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
++ ++||+|+|..+++|+. +...++.++.|+|||||++++.++.
T Consensus 86 ~~-~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 86 LN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cC-CCeeEEEECChhhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 85 6999999999998875 8899999999999999999999875
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-13 Score=137.40 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=93.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-------CCCeEEEEccccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-------GIPAFVAMLGTRR 257 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-------g~~~~~~~~d~~~ 257 (595)
.+.+.+.+.... ...+|||||||+|.++..|++.-.....++++|+|+.+++.|+++ ..++.+.+.|+..
T Consensus 24 ~~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 24 DFYKMIDEYHDG---ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp HHHHHHHHHCCS---CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred HHHHHHHHHhcC---CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 445555555432 245899999999999999996411345889999999999999876 4578999999999
Q ss_pred CCCCC------CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 LPFPA------FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 LPfpd------~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++++ ++||+|+|+.+++|+ +...++.++.|+|||||+|++.+
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~~ 149 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIWG 149 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEEe
Confidence 98887 899999999999776 88999999999999999999843
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=128.11 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=85.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcC-CCcccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFT- 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~-vL~h~~- 278 (595)
..+|||+|||+|.++..|++++. .++++|+++.+++.|+++..++.+...|+..+++ +++||+|+|.. +++|+.
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEECTTGGGGCCS
T ss_pred CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEEcCchHhhcCC
Confidence 34899999999999999998854 7889999999999999987778899999988887 68999999755 887764
Q ss_pred -cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 279 -AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 279 -~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++...+|.++.++|||||++++..+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 3456899999999999999999864
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.7e-13 Score=135.43 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=103.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CC--eEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IP--AFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
..+|||||||+|.++..|+........++++|+++.+++.|+++. .. +.+.+.|+..++++ ++||+|+|+.++
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 197 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLN 197 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSG
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChh
Confidence 348999999999999999644334568999999999999998873 22 78999999999988 999999999999
Q ss_pred cccccCHH---HHHHHHHhhcCCCcEEEEEcCC--------CCCCC------------------------CchhHHHHHH
Q 007645 275 IPFTAYNA---TYLIEVDRLLRPGGYLVISGPP--------VQWPK------------------------QDKEWADLQA 319 (595)
Q Consensus 275 ~h~~~d~~---~~L~Ei~RvLRPGG~lvls~p~--------~~~~~------------------------~~~~w~~l~~ 319 (595)
+|+. ++. .++.++.++|||||+++++... ..|.. ....-..+.+
T Consensus 198 ~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 198 IYEP-DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGCC-CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhcC-CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 8876 444 3799999999999999998742 11220 0012456888
Q ss_pred HHHHcCcEEEEeec
Q 007645 320 VARALCYELIAVDG 333 (595)
Q Consensus 320 la~~~~w~~v~~~~ 333 (595)
++++.||+.+....
T Consensus 277 ~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 277 QLEEAGFTDLRFED 290 (305)
T ss_dssp HHHHTTCEEEEEEC
T ss_pred HHHHCCCEEEEEEc
Confidence 99999999886653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-13 Score=137.32 Aligned_cols=102 Identities=13% Similarity=0.018 Sum_probs=76.9
Q ss_pred cceEEEECCCCcHHHHHH----hhcCCc-eEEEEeecCcHHHHHHHHHc-----CC-CeE--EEEcccccCC------CC
Q 007645 201 LRTALDMGCGVASFGGSM----LSENIL-TLSFAPRDSHKAQIQFALER-----GI-PAF--VAMLGTRRLP------FP 261 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~L----a~~gv~-~~~v~~vD~s~~~l~~A~er-----g~-~~~--~~~~d~~~LP------fp 261 (595)
..+|||||||+|.++..+ +.+... .+.++++|+|+.|++.|+++ ++ ++. +...+.+.++ ++
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 458999999999766543 333211 12458999999999999876 22 233 3344444443 67
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++||+|+|+.+++|+. ++..+|.++.|+|||||++++..+
T Consensus 133 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 89999999999997775 899999999999999999999764
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-13 Score=126.33 Aligned_cols=123 Identities=12% Similarity=0.094 Sum_probs=96.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
+|||+|||+|.++..|++.+. .++++|+++.+++.|+++ +.++.+...|+..+++++++||+|+|+. .|+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~~ 106 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHLP 106 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcCC
Confidence 899999999999999998854 788999999999998876 5678888899988898889999999964 3543
Q ss_pred -cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----------CchhHHHHHHHHHHcCcEEEEee
Q 007645 279 -AYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------QDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 279 -~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----------~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
++...++.++.++|||||++++.++...... ....-..+.++++ +|+++..+
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEE
Confidence 4567899999999999999999876322110 0112345667766 88877553
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=134.59 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=93.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++.+.+.+....+. +|||||||+|.++..+++. +. .++++|+++.+++.|+++ ++ .+.+...|..
T Consensus 76 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 150 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE 150 (318)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH
Confidence 44556666666655544 8999999999999999987 43 788999999999999876 33 3788888887
Q ss_pred cCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+| ++||+|++..+++|+. ++...++.++.++|||||++++.++
T Consensus 151 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 195 (318)
T 2fk8_A 151 DFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 195 (318)
T ss_dssp GCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 775 7899999999998885 4778999999999999999999886
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-13 Score=128.42 Aligned_cols=115 Identities=20% Similarity=0.248 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLP 259 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LP 259 (595)
...+.+.+.+.+ . ...+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++. .++.+.+.|...++
T Consensus 29 ~~~~~~~l~~~~--~--~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~ 102 (215)
T 2pxx_A 29 FSSFRALLEPEL--R--PEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD 102 (215)
T ss_dssp HHHHHHHHGGGC--C--TTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCC
T ss_pred HHHHHHHHHHhc--C--CCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCC
Confidence 344455554444 2 2348999999999999999998653 7889999999999999874 35788899998889
Q ss_pred CCCCceeEEEEcCCCcccc--------------cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFT--------------AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~--------------~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|++..+++++. .+...++.++.|+|||||.+++.++
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 9899999999988886543 2446899999999999999999986
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=135.92 Aligned_cols=142 Identities=14% Similarity=0.058 Sum_probs=99.4
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------C---------------
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------I--------------- 246 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~--------------- 246 (595)
+.+.+++........+|||||||+|.++..++..+. ..++++|+|+.+++.|+++. .
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~ 120 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 120 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCC
Confidence 344444432222345899999999988877776653 37899999999999887641 0
Q ss_pred -------------Ce-EEEEccccc-CCCC---CCceeEEEEcCCCcccc---cCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 247 -------------PA-FVAMLGTRR-LPFP---AFSFDIVHCSRCLIPFT---AYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 247 -------------~~-~~~~~d~~~-LPfp---d~sFDlV~~s~vL~h~~---~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
.+ .+.++|+.. .|++ .++||+|+|+.+|+|.. ++...++.++.|+|||||+|++++...
T Consensus 121 ~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~ 200 (263)
T 2a14_A 121 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 200 (263)
T ss_dssp GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred CcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 11 267777766 3543 67999999999998753 244689999999999999999997411
Q ss_pred -CC--------CCCchhHHHHHHHHHHcCcEEEEe
Q 007645 306 -QW--------PKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 306 -~~--------~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.+ ......-+.+.+++++.+|+.+..
T Consensus 201 ~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~ 235 (263)
T 2a14_A 201 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 235 (263)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred CccceeCCeEeeccccCHHHHHHHHHHCCCEEEEE
Confidence 11 000112446888899999987755
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-12 Score=123.29 Aligned_cols=141 Identities=14% Similarity=0.066 Sum_probs=100.1
Q ss_pred CcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEE
Q 007645 177 TMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVA 251 (595)
Q Consensus 177 ~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~ 251 (595)
..|..+.......+.+.+........+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ +.. +.+.
T Consensus 37 ~~f~~~~~~~~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~ 114 (205)
T 3grz_A 37 LAFGTGNHQTTQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQ 114 (205)
T ss_dssp -----CCHHHHHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred cccCCCCCccHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 33444444444444444432222234899999999999999988743 4788999999999999876 444 7788
Q ss_pred EcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 252 MLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 252 ~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
..|.... .+++||+|+++..+++ ...++.++.++|||||++++++.. ......+.+++++.+|+.+..
T Consensus 115 ~~d~~~~--~~~~fD~i~~~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 115 KTSLLAD--VDGKFDLIVANILAEI----LLDLIPQLDSHLNEDGQVIFSGID------YLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp ESSTTTT--CCSCEEEEEEESCHHH----HHHHGGGSGGGEEEEEEEEEEEEE------GGGHHHHHHHHHHTTEEEEEE
T ss_pred ecccccc--CCCCceEEEECCcHHH----HHHHHHHHHHhcCCCCEEEEEecC------cccHHHHHHHHHHcCCceEEe
Confidence 8877553 4689999999877743 467899999999999999997531 112456778888899988754
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=125.39 Aligned_cols=99 Identities=20% Similarity=0.218 Sum_probs=84.4
Q ss_pred ceEEEECCCCcHHH-HHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFG-GSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a-~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+|||+|||+|.++ ..++..+. .++++|+|+.+++.|+++ +.++.+.+.|+..+++++++||+|+|..+++|
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 101 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFH 101 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHh
Confidence 48999999999874 44555443 788999999999998765 56678889999999998999999999999988
Q ss_pred cc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+. ++...++.++.++|||||++++.+.
T Consensus 102 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 102 MRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 84 4667999999999999999999875
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=133.60 Aligned_cols=144 Identities=18% Similarity=0.175 Sum_probs=97.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--------------------
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-------------------- 246 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-------------------- 246 (595)
+..+.+.+........+|||||||+|.++..++... ...++++|+|+.|++.|+++..
T Consensus 58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 445555553321234589999999999554443322 2388999999999998877311
Q ss_pred ---------------CeEEEEccccc-CCC-----CCCceeEEEEcCCCcccc---cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 247 ---------------PAFVAMLGTRR-LPF-----PAFSFDIVHCSRCLIPFT---AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 247 ---------------~~~~~~~d~~~-LPf-----pd~sFDlV~~s~vL~h~~---~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...+..+|+.. +|+ ++++||+|+|+.+|+|.. ++...+|.++.|+|||||+|+++.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 136 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 03455567766 664 456799999999997743 257799999999999999999975
Q ss_pred C-CCCCC--------CCchhHHHHHHHHHHcCcEEEEee
Q 007645 303 P-PVQWP--------KQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 303 p-~~~~~--------~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
. ...|. .....-+.+.+++++.+|+.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 216 ALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 3 11110 001124568888999999887553
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-11 Score=116.73 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=90.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEccccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRR 257 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~ 257 (595)
...+.+.+.+....+ .+|||+|||+|.++..+++. ...+.++|+++.+++.|+++ +.. +.+...|...
T Consensus 39 ~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 39 KGTKILVENVVVDKD--DDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHHCCCCTT--CEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred hHHHHHHHHcccCCC--CeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence 445566666665544 48999999999999999988 34788999999999998876 443 7888888765
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++++||+|+++..+++..++...++.++.++|+|||.+++..+
T Consensus 114 -~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 114 -NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp -TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 445789999999988855334567899999999999999999876
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=130.28 Aligned_cols=128 Identities=15% Similarity=0.223 Sum_probs=97.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||+|||+|.++..|++++. .++++|+++.+++.|+++ +.++.+...|+..+++ +++||+|+|+.+++|+
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 197 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMFL 197 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGGS
T ss_pred CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhhC
Confidence 4899999999999999999854 788999999999988765 5588999999988887 7899999999999887
Q ss_pred c-cCHHHHHHHHHhhcCCCcEEEEEcCCC--CCCCC-----chhHHHHHHHHHHcCcEEEEeecce
Q 007645 278 T-AYNATYLIEVDRLLRPGGYLVISGPPV--QWPKQ-----DKEWADLQAVARALCYELIAVDGNT 335 (595)
Q Consensus 278 ~-~d~~~~L~Ei~RvLRPGG~lvls~p~~--~~~~~-----~~~w~~l~~la~~~~w~~v~~~~~~ 335 (595)
. ++...++.++.++|||||++++..... ..... ...-..+.++++. |+++......
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ 261 (286)
T 3m70_A 198 NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYNENM 261 (286)
T ss_dssp CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEECCE
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEEccC
Confidence 5 345689999999999999988765311 00000 0112346666653 8887665443
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=129.34 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=99.1
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--C------------------------------
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--P------------------------------ 247 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~------------------------------ 247 (595)
...+|||+|||+|.++..++..+. ..++++|+|+.+++.|+++.. +
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 345899999999999999888754 588999999999999987622 1
Q ss_pred --e-EEEEcccccCC-CCC---CceeEEEEcCCCcccc---cCHHHHHHHHHhhcCCCcEEEEEcCCCC-C-C-------
Q 007645 248 --A-FVAMLGTRRLP-FPA---FSFDIVHCSRCLIPFT---AYNATYLIEVDRLLRPGGYLVISGPPVQ-W-P------- 308 (595)
Q Consensus 248 --~-~~~~~d~~~LP-fpd---~sFDlV~~s~vL~h~~---~d~~~~L~Ei~RvLRPGG~lvls~p~~~-~-~------- 308 (595)
+ .+...|+..++ +++ ++||+|+|..++++.. .+...++.++.|+|||||+|++.+.... + .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 5 78888877653 355 8999999999997433 2567899999999999999999874211 1 0
Q ss_pred CCchhHHHHHHHHHHcCcEEEEee
Q 007645 309 KQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 309 ~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
.....-+.+.+++++.+|+.+...
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~ 237 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFE 237 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEE
Confidence 001123468888999999887654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=135.15 Aligned_cols=101 Identities=17% Similarity=0.087 Sum_probs=78.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-------eEEEEccc------ccC--CCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-------AFVAMLGT------RRL--PFP 261 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-------~~~~~~d~------~~L--Pfp 261 (595)
..+|||||||+|..+..++..+. ..++++|+|+.|++.|+++ +.. +.+.+.++ ..+ +++
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 45899999999987666666543 3789999999999999876 221 34666655 333 467
Q ss_pred CCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++||+|+|..++++.. ++...+|.++.|+|||||+|+++++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 78999999999986532 3557999999999999999999886
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=129.54 Aligned_cols=102 Identities=21% Similarity=0.234 Sum_probs=85.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC-CCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF-PAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf-pd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ +. ++.+.+.|+..+++ ++++||+|+|..+
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence 34899999999999999888753 3788999999999999876 22 46888889988888 6889999999999
Q ss_pred Cccc---ccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 274 LIPF---TAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 274 L~h~---~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
++|. .++...+|.++.|+|||||++++.++.
T Consensus 143 l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9662 235678999999999999999998763
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=121.91 Aligned_cols=121 Identities=17% Similarity=0.089 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcc
Q 007645 181 DGADKYIDKLKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d 254 (595)
...+...+.+.+.+... .....+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ +. ++.+.+.|
T Consensus 24 p~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d 101 (189)
T 3p9n_A 24 PTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGA 101 (189)
T ss_dssp --CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESC
T ss_pred cCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEcc
Confidence 33455555555555431 11234899999999999998888753 3788999999999998876 43 57888888
Q ss_pred cccCC--CCCCceeEEEEcCCCcccccCHHHHHHHHHh--hcCCCcEEEEEcC
Q 007645 255 TRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~LP--fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~R--vLRPGG~lvls~p 303 (595)
+..++ +++++||+|++...+++..++...++.++.+ +|+|||.+++..+
T Consensus 102 ~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 102 VAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 76653 4578999999998875543467789999999 9999999999875
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=131.50 Aligned_cols=112 Identities=13% Similarity=0.067 Sum_probs=89.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--------CCeEEEEcccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--------IPAFVAMLGTR 256 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--------~~~~~~~~d~~ 256 (595)
.....+.+.+.... .+|||||||+|.++..|++++. .++++|+++.+++.|+++. .++.+.+.|+.
T Consensus 70 ~~~~~~~~~~~~~~---~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 70 SEAREFATRTGPVS---GPVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHHCCCC---SCEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHHhhCCCC---CcEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 34445555554332 2799999999999999999854 6889999999999998762 45889999999
Q ss_pred cCCCCCCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+++ +++||+|+|.....|+.. +...+|.++.++|||||+|++.++
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 191 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLA 191 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEee
Confidence 9988 689999998755445542 347899999999999999999876
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.8e-12 Score=119.60 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=77.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCC-CCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLP-FPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LP-fpd~sFDlV~~s~vL 274 (595)
..+|||+|||+|.++..|+++ ...++++|+++.+++.|+++ + .++.+...+...++ +.+++||+|+++...
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 348999999999999999988 34788999999999999876 4 35777776666653 557899999987322
Q ss_pred cc--------cccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IP--------FTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h--------~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+ ..++...++.++.|+|||||++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22 122345788999999999999999864
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=130.06 Aligned_cols=113 Identities=17% Similarity=0.077 Sum_probs=86.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccC-
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL- 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~L- 258 (595)
..+.+.+.+.+.. . ..+|||||||+|..+..+++... .+++++|+|+.+++.|+++ +..+.+...+.+.+
T Consensus 47 ~~~m~~~a~~~~~-~--G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 47 TPYMHALAAAASS-K--GGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHHHTT-T--CEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcc-C--CCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhc
Confidence 3455566665543 2 34899999999999999988743 4788999999999999876 44566777765443
Q ss_pred -CCCCCceeEEEE-----cCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 -PFPAFSFDIVHC-----SRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 -Pfpd~sFDlV~~-----s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++++||.|+. ...+.|+. +...++.++.|+|||||+|++..
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccCCceEEEeeeecccchhhhc-chhhhhhhhhheeCCCCEEEEEe
Confidence 578899999985 33444544 67799999999999999999853
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=129.59 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRL 258 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~L 258 (595)
...+++.+.+.+.. ...+|||||||+|.++..|++.+. ..++++|+|+.+++.|+++. .++.+.+++...+
T Consensus 46 ~~~~~~~l~~~~~~---~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~ 120 (236)
T 1zx0_A 46 ETPYMHALAAAASS---KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV 120 (236)
T ss_dssp GHHHHHHHHHHHTT---TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH
T ss_pred HHHHHHHHHhhcCC---CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh
Confidence 34555666555432 234899999999999999977643 37899999999999998863 5678888888888
Q ss_pred --CCCCCceeEEEE-cCCCcccc----cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 --PFPAFSFDIVHC-SRCLIPFT----AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 --Pfpd~sFDlV~~-s~vL~h~~----~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++++||+|++ .+.+ +.. .+...++.++.|+|||||+|++..
T Consensus 121 ~~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 121 APTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hcccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 899999999999 5554 222 123477999999999999999864
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=116.76 Aligned_cols=134 Identities=11% Similarity=-0.026 Sum_probs=101.8
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||+|||+|.++..+++.+. ...++++|+++.+++.|+++ +. ++.+...+.....
T Consensus 27 ~i~~~~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL 103 (204)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC
T ss_pred HHHHHHHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh
Confidence 3334555666655544 999999999999999998852 34789999999999999875 43 5778888875544
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
...++||+|++..++. +...++.++.++|||||++++..+. ......+.+.+++.+|+....
T Consensus 104 ~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~l~~~g~~~~~~ 165 (204)
T 3e05_A 104 DDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAVT------LDTLTKAVEFLEDHGYMVEVA 165 (204)
T ss_dssp TTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEECB------HHHHHHHHHHHHHTTCEEEEE
T ss_pred hcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEecc------cccHHHHHHHHHHCCCceeEE
Confidence 3447899999988773 6788999999999999999998641 223556778888889854433
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.35 E-value=4e-12 Score=127.52 Aligned_cols=116 Identities=12% Similarity=0.071 Sum_probs=89.4
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHH------HHHHHHHc----C--CCeEEEE
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKA------QIQFALER----G--IPAFVAM 252 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~------~l~~A~er----g--~~~~~~~ 252 (595)
.....+.+.+....+. +|||||||+|.++..++++......++++|+|+. +++.|+++ + .++.+..
T Consensus 30 ~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~ 107 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF 107 (275)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence 3345566666555544 9999999999999999987312247899999987 88888766 2 2477888
Q ss_pred cc---cccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 253 LG---TRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 253 ~d---~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.| ...+|+++++||+|+|..+++|+. ++..++..+.++++|||++++.+.
T Consensus 108 ~d~~~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 108 NTNLSDDLGPIADQHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp SCCTTTCCGGGTTCCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CChhhhccCCCCCCCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEEe
Confidence 77 566778889999999999998876 666777777777777999999864
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=133.27 Aligned_cols=102 Identities=21% Similarity=0.153 Sum_probs=82.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----------------------------------
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------------------------------- 245 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------------------------------- 245 (595)
..+|||||||+|.++..|+.+. ....++++|+++.+++.|+++.
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKW-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHT-CCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4599999999999999999872 2348899999999999998762
Q ss_pred ----------------------------CCeEEEEcccccCC-----CCCCceeEEEEcCCCcccc-----cCHHHHHHH
Q 007645 246 ----------------------------IPAFVAMLGTRRLP-----FPAFSFDIVHCSRCLIPFT-----AYNATYLIE 287 (595)
Q Consensus 246 ----------------------------~~~~~~~~d~~~LP-----fpd~sFDlV~~s~vL~h~~-----~d~~~~L~E 287 (595)
.++.+.+.|....+ +.+++||+|+|..+++|+. ++...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 24777777765443 6788999999999985542 245689999
Q ss_pred HHhhcCCCcEEEEEcC
Q 007645 288 VDRLLRPGGYLVISGP 303 (595)
Q Consensus 288 i~RvLRPGG~lvls~p 303 (595)
+.++|||||+|++...
T Consensus 206 ~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHEEEEEEEEEECC
T ss_pred HHHHhCCCcEEEEecC
Confidence 9999999999999754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-12 Score=124.95 Aligned_cols=111 Identities=17% Similarity=0.190 Sum_probs=91.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
..+.+.+.+.++. ..+|||+|||+|.++..+++. ..++++|+++.+++.|+++ +.++.+...|+..++
T Consensus 21 ~~~~~~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 21 PEWVAWVLEQVEP----GKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE 92 (243)
T ss_dssp HHHHHHHHHHSCT----TCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC
T ss_pred HHHHHHHHHHcCC----CCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC
Confidence 3455566666543 248999999999999999887 4789999999999999876 456888999988888
Q ss_pred CCCCceeEEEEcC-CCcccc--cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSR-CLIPFT--AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~-vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++ ++||+|+|.. +++|+. ++...++.++.++|||||.+++..+
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CC-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 76 8999999987 887774 3456899999999999999999765
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-12 Score=143.90 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=96.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----------C-CCeEEEE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----------G-IPAFVAM 252 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----------g-~~~~~~~ 252 (595)
...++.+.+.+....+. +|||||||+|.++..|++.+.....++++|+++.+++.|+++ + .++.+.+
T Consensus 707 eqRle~LLelL~~~~g~--rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiq 784 (950)
T 3htx_A 707 KQRVEYALKHIRESSAS--TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYD 784 (950)
T ss_dssp HHHHHHHHHHHHHSCCS--EEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEE
T ss_pred HHHHHHHHHHhcccCCC--EEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEE
Confidence 34455566666554444 999999999999999999863345899999999999999872 2 3588999
Q ss_pred cccccCCCCCCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 253 LGTRRLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 253 ~d~~~LPfpd~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
+|+..+++++++||+|+|..+++|+.+. ...++.++.|+|||| .+++++|.
T Consensus 785 GDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 785 GSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp SCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999999999999999999998732 226899999999999 88888874
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.3e-12 Score=129.81 Aligned_cols=112 Identities=16% Similarity=0.019 Sum_probs=86.5
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCC-----
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPF----- 260 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPf----- 260 (595)
.++.+.+.+....+. +|||||||+|.++..|++++. .++++|+|+.|++.|+++.... ....+...++.
T Consensus 33 ~~~~il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 33 DRENDIFLENIVPGS--TVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADR-CVTIDLLDITAEIPKE 106 (261)
T ss_dssp HHHHHHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSS-CCEEEECCTTSCCCGG
T ss_pred HHHHHHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhc-cceeeeeecccccccc
Confidence 445566666665554 999999999999999999864 7889999999999999885432 22333333332
Q ss_pred CCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 261 PAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
.+++||+|+|+.+++|+. ++...++.++.++| |||.++++.+.
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 257899999999998876 34567999999999 99999999763
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-11 Score=114.02 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=95.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccc-cc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGT-RR 257 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~-~~ 257 (595)
.....+.+.+....+ .+|||+|||+|.++..+++.. ....++++|+++.+++.|+++ +.. + +...+. ..
T Consensus 12 ~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~ 87 (178)
T 3hm2_A 12 HVRALAISALAPKPH--ETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRA 87 (178)
T ss_dssp HHHHHHHHHHCCCTT--EEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGG
T ss_pred HHHHHHHHHhcccCC--CeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhh
Confidence 344555555555444 489999999999999998873 346889999999999999876 443 4 666665 34
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
++..+++||+|++..++++ ..++.++.++|||||++++.... ......+.+..++.+++...
T Consensus 88 ~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~------~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAVT------VESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEECS------HHHHHHHHHHHHHHCCEEEE
T ss_pred hhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEeec------cccHHHHHHHHHHcCCeeEE
Confidence 4443389999999998855 56899999999999999998741 12344566777777766543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.5e-12 Score=123.24 Aligned_cols=116 Identities=17% Similarity=0.259 Sum_probs=94.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-ccCCCC-CCceeEEEEcCCCcccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-RRLPFP-AFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-~~LPfp-d~sFDlV~~s~vL~h~~ 278 (595)
..+|||+|||+|.++..|++.+. .++++|+++.+++.|+++..++.+.+.|. ..+|++ +++||+|+|+.
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~------ 119 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR------ 119 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES------
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC------
Confidence 34899999999999999999853 78899999999999999987899999998 678888 89999999872
Q ss_pred cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec
Q 007645 279 AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 279 ~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~ 333 (595)
+...++.++.++|||||.++..... .....+.+.+++.+|+.+....
T Consensus 120 -~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 -GPTSVILRLPELAAPDAHFLYVGPR-------LNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp -CCSGGGGGHHHHEEEEEEEEEEESS-------SCCTHHHHHHHHTTCEEEEEEE
T ss_pred -CHHHHHHHHHHHcCCCcEEEEeCCc-------CCHHHHHHHHHHCCCeEEEEEe
Confidence 4567899999999999999943321 1123567788888988775543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-12 Score=123.58 Aligned_cols=99 Identities=19% Similarity=0.275 Sum_probs=82.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..|++++. .++++|+|+.+++.|+++ +.++.+.+.|+..++++ ++||+|+|..+..+
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 117 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CCccEEEEcCCchh
Confidence 34899999999999999999854 788999999999998865 56788999999888875 68999999754433
Q ss_pred c-c-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 F-T-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~-~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ . ++...++.++.++|||||.+++..+
T Consensus 118 ~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 3 2 3456899999999999999998765
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=119.50 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=97.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sFDlV~~s~v 273 (595)
..+|||||||+|.++..+++... ...++++|+++.+++.|+++ ++ ++.+...|+..++ +++++||+|+++..
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 34899999999999999998742 34789999999999998875 43 6888899988877 77889999999875
Q ss_pred Cccccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 274 LIPFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 274 L~h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
. +|.. ....++.++.++|||||.+++.+.. ..-...+.+++++.+|+.+....+
T Consensus 121 ~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~d 182 (214)
T 1yzh_A 121 D-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN------RGLFEYSLVSFSQYGMKLNGVWLD 182 (214)
T ss_dssp C-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC------HHHHHHHHHHHHHHTCEEEEEESS
T ss_pred C-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC------HHHHHHHHHHHHHCCCeeeecccc
Confidence 4 3331 1257999999999999999998641 112345667777788988765444
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.6e-12 Score=131.20 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=83.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------------CCeEEEEcccccCC----CC--C
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------------IPAFVAMLGTRRLP----FP--A 262 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------------~~~~~~~~d~~~LP----fp--d 262 (595)
..+|||+|||+|.++..+++.+ ...++++|+++.+++.|+++. .++.+.+.|+..++ ++ +
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 4489999999999999998763 347899999999999998762 24788889988876 54 4
Q ss_pred CceeEEEEcCCCccccc---CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTA---YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~---d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|+.++++..+ +...+|.++.|+|||||+|+++++
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 59999999999955423 346899999999999999999886
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=112.20 Aligned_cols=136 Identities=10% Similarity=0.043 Sum_probs=104.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
....+.+.+.+....+. +|||+|||+|.++..+++. ...++++|+++.+++.|+++ +. ++.+...|...
T Consensus 21 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDD--VVVDVGCGSGGMTVEIAKR---CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCCCSHHHHHHHTT---SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-
Confidence 45555666666555444 8999999999999999983 34788999999999999876 43 57888888766
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeEe
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVIW 338 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~iw 338 (595)
++++++||+|++..+ .+...++.++.++ |||.+++..+. ......+.+.+++.+|++...+.....+
T Consensus 95 ~~~~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~------~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 161 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIV------LENAAKIINEFESRGYNVDAVNVFISYA 161 (183)
T ss_dssp HGGGCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESC------HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccCCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEecc------cccHHHHHHHHHHcCCeEEEEEeeeehh
Confidence 667789999999987 3678899999999 99999998751 2234567778888888877665444444
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-11 Score=115.72 Aligned_cols=127 Identities=12% Similarity=-0.020 Sum_probs=95.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfp 261 (595)
..+.+.+....+. +|||+|||+|.++..+++++ ..++++|+++.+++.|+++ +. ++.+...|+......
T Consensus 45 ~~~l~~l~~~~~~--~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 45 ALTLAALAPRRGE--LLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD 119 (204)
T ss_dssp HHHHHHHCCCTTC--EEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred HHHHHhcCCCCCC--EEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence 3445555555444 89999999999999999883 4788999999999998876 44 478888887763223
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
...||+|++...+ +.. ++.++.++|||||++++.... ......+.+.+++.++++...
T Consensus 120 ~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 120 LPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAVT------LESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp SCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEECS------HHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEecC------cccHHHHHHHHHhCCCcEEEE
Confidence 3579999988754 456 999999999999999998751 123455667777778776544
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-12 Score=125.12 Aligned_cols=100 Identities=11% Similarity=0.000 Sum_probs=84.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC--CeEEEEcccccCCCCC-----CceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI--PAFVAMLGTRRLPFPA-----FSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~--~~~~~~~d~~~LPfpd-----~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|++.+. .++++|+++.+++.|+++.. ++.+.+.|+..+++.. ..||+|++..+
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~ 133 (245)
T 3ggd_A 57 ELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG 133 (245)
T ss_dssp TSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred CCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence 34899999999999999999865 78899999999999998753 6788888887765432 24999999999
Q ss_pred Ccccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|+. ++...++.++.++|||||++++.+.
T Consensus 134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 134 FHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp STTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 97775 2567999999999999999998874
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-12 Score=121.84 Aligned_cols=109 Identities=19% Similarity=0.307 Sum_probs=88.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCH
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN 281 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~ 281 (595)
.+|||+|||+|.++..++ ..++++|+++. ++.+...++..+|+++++||+|+|..++ |+ .+.
T Consensus 69 ~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~l-~~-~~~ 130 (215)
T 2zfu_A 69 LVVADFGCGDCRLASSIR------NPVHCFDLASL----------DPRVTVCDMAQVPLEDESVDVAVFCLSL-MG-TNI 130 (215)
T ss_dssp SCEEEETCTTCHHHHHCC------SCEEEEESSCS----------STTEEESCTTSCSCCTTCEEEEEEESCC-CS-SCH
T ss_pred CeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------CceEEEeccccCCCCCCCEeEEEEehhc-cc-cCH
Confidence 489999999999998874 36778888876 4557788888899999999999999999 44 588
Q ss_pred HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 282 ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 282 ~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
..++.++.++|+|||+++++++.... ..-..+.+++++.+|+.+...
T Consensus 131 ~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 131 RDFLEEANRVLKPGGLLKVAEVSSRF----EDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEECGGGC----SCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEEEcCCCC----CCHHHHHHHHHHCCCEEEEEe
Confidence 99999999999999999998753221 134568888999999987653
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-11 Score=124.85 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=102.8
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
...+.+.++.......+|||+|||+|.++..++++. ....++++|++ .+++.|+++ ++ .+.+...|....++
T Consensus 152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 229 (335)
T 2r3s_A 152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDY 229 (335)
T ss_dssp HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCC
T ss_pred HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCC
Confidence 344455554300224599999999999999999873 23488899999 999998876 33 47888888887777
Q ss_pred CCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCCC--------------------CchhHHHHHH
Q 007645 261 PAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWPK--------------------QDKEWADLQA 319 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~--------------------~~~~w~~l~~ 319 (595)
+++ ||+|++..+++|+.+ +...+|+++.++|+|||++++.++...... ....-+++.+
T Consensus 230 ~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 230 GND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 655 999999999988852 336899999999999999999876322110 0111334667
Q ss_pred HHHHcCcEEEEe
Q 007645 320 VARALCYELIAV 331 (595)
Q Consensus 320 la~~~~w~~v~~ 331 (595)
++++.+|+.+..
T Consensus 309 ll~~aGf~~~~~ 320 (335)
T 2r3s_A 309 MFSNAGFSHSQL 320 (335)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHCCCCeeeE
Confidence 777788876654
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=123.48 Aligned_cols=95 Identities=23% Similarity=0.372 Sum_probs=82.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||+|||+|.++..+++.. ....++++|+++.+++.|++++.++.+...+...+|+++++||+|++..+.
T Consensus 86 ~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~------ 158 (269)
T 1p91_A 86 ATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP------ 158 (269)
T ss_dssp CCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC------
T ss_pred CCEEEEECCCCCHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh------
Confidence 3489999999999999999872 234788999999999999999888899999999999999999999987653
Q ss_pred HHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 281 NATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
..+.++.|+|||||.+++.++.
T Consensus 159 --~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 159 --CKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp --CCHHHHHHHEEEEEEEEEEEEC
T ss_pred --hhHHHHHHhcCCCcEEEEEEcC
Confidence 2489999999999999999874
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=115.00 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=91.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC-
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY- 280 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d- 280 (595)
.+|||+|||+|.++..|++++ .++++|+++.+++. ..++.+.++|+.. ++++++||+|+|+..+++..+.
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~----~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES----HRGGNLVRADLLC-SINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT----CSSSCEEECSTTT-TBCGGGCSEEEECCCCBTTCCCT
T ss_pred CeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc----ccCCeEEECChhh-hcccCCCCEEEECCCCccCCccc
Confidence 389999999999999999986 88999999999988 4456788888766 6677899999999888543321
Q ss_pred -------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 281 -------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 281 -------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
...++.++.+.| |||.+++..+.. ..-..+.+++++.+|+.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------NRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------GCHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC------CCHHHHHHHHHHCCCcEEEEE
Confidence 247889999999 999999987411 224567888889999876553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-11 Score=118.96 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=94.1
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sFDlV~~s~vL 274 (595)
.+|||||||+|.++..|++.. ....++++|+|+.+++.|+++ ++ ++.+..+|+..++ +++++||.|++.+..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~ 118 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 118 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred ceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC
Confidence 489999999999999999873 235789999999999998875 44 5788888887776 778999999987654
Q ss_pred cccccC--------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 275 IPFTAY--------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 275 ~h~~~d--------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
+|... ...++.++.++|||||.|++.+. ...-...+.+.+++.+|+......+
T Consensus 119 -p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td------~~~~~~~~~~~~~~~g~~~~~~~~d 179 (213)
T 2fca_A 119 -PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEYGLLLTYVSLD 179 (213)
T ss_dssp -CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES------CHHHHHHHHHHHHHHTCEEEEEESS
T ss_pred -CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC------CHHHHHHHHHHHHHCCCcccccccc
Confidence 33311 25789999999999999999863 1112334556666678877654333
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-11 Score=112.14 Aligned_cols=131 Identities=13% Similarity=0.088 Sum_probs=98.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~ 257 (595)
......+.+.+....+. +|||+|||+|.++..+++.+ ..++++|+++.+++.|+++ +. ++.+...+...
T Consensus 19 ~~~~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 93 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE 93 (192)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH
Confidence 34444555555554444 99999999999999999886 4889999999999999874 43 57777777655
Q ss_pred CCCCC-CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 258 LPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 258 LPfpd-~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
++++ ++||+|++..+++ +...++.++.++|+|||.+++..+. ......+.+++++.+|+...
T Consensus 94 -~~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~~------~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 94 -ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAIL------LETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp -HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEECB------HHHHHHHHHHHHHTTCCCEE
T ss_pred -hcccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEecC------cchHHHHHHHHHHCCCceEE
Confidence 2333 5899999988763 4578999999999999999998751 22345677778888885443
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=129.39 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=92.8
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccC
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL 258 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~L 258 (595)
...+++.+.+.+........+|||+|||+|.++..+++++. .++++|+++.+++.|+++ +..+.+...|....
T Consensus 216 t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~ 292 (381)
T 3dmg_A 216 SLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA 292 (381)
T ss_dssp HHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT
T ss_pred HHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc
Confidence 34445555544421112244899999999999999999853 788999999999998875 56788999998888
Q ss_pred CCCCCceeEEEEcCCCccc----ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 PFPAFSFDIVHCSRCLIPF----TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~----~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.++++||+|+|+..+++. .++...++.++.++|||||.++++.+
T Consensus 293 ~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 293 LTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp SCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 7777899999999888551 23456899999999999999999875
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=116.70 Aligned_cols=131 Identities=13% Similarity=0.158 Sum_probs=96.7
Q ss_pred HHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC--C
Q 007645 190 LKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP--F 260 (595)
Q Consensus 190 L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP--f 260 (595)
+...+... .+ .+|||+|||+|.++..+++++.. .++++|+++.+++.|+++ +. ++.+...|+..++ +
T Consensus 40 l~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 40 LAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI 115 (259)
T ss_dssp HHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS
T ss_pred HHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh
Confidence 34444444 43 48999999999999999988542 889999999999999876 44 3788888887765 5
Q ss_pred CCCceeEEEEcCCCccc-----c--------------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHH
Q 007645 261 PAFSFDIVHCSRCLIPF-----T--------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVA 321 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~-----~--------------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la 321 (595)
++++||+|+|+..+.+. . .+...++.++.++|||||++++..++ .....+...+
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~~~~~l 188 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-------ERLLDIIDIM 188 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-------TTHHHHHHHH
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-------HHHHHHHHHH
Confidence 67899999997654332 0 12346899999999999999997652 1234566777
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
++.+|.....
T Consensus 189 ~~~~~~~~~~ 198 (259)
T 3lpm_A 189 RKYRLEPKRI 198 (259)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCceEEE
Confidence 7778876544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.4e-11 Score=114.50 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=94.2
Q ss_pred cceEEEECCC-CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccC-CCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCG-VASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL-PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCG-tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~L-Pfpd~sFDlV~~s~vL 274 (595)
..+|||+||| +|.++..+++.. ...++++|+++.+++.|+++ +.++.+...|...+ ++++++||+|+|+..+
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCCC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCCC
Confidence 3489999999 999999999873 34788999999999998865 55788888886433 5667899999998766
Q ss_pred ccccc------------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTA------------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~------------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.+... ....++.++.++|||||++++..+. .......+.+.+++.+|+....
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~l~~~g~~~~~~ 203 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD-----KEKLLNVIKERGIKLGYSVKDI 203 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES-----CHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc-----cHhHHHHHHHHHHHcCCceEEE
Confidence 44321 1367899999999999999997652 1123456778888889876543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=6e-11 Score=117.53 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=92.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCC---CCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP---AFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfp---d~sFDlV~~s~ 272 (595)
..+|||+|||+|.++..|+... ....++++|+++.+++.|+++ +. ++.+..+++..++++ +++||+|+|..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~ 149 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence 3489999999999999998642 234789999999999998764 54 588888888887764 68999999976
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+ .+...++.++.++|||||++++..... .......+.+.+++.+++....
T Consensus 150 ~-----~~~~~~l~~~~~~LkpgG~l~~~~g~~----~~~~~~~~~~~l~~~g~~~~~~ 199 (240)
T 1xdz_A 150 V-----ARLSVLSELCLPLVKKNGLFVALKAAS----AEEELNAGKKAITTLGGELENI 199 (240)
T ss_dssp C-----SCHHHHHHHHGGGEEEEEEEEEEECC-----CHHHHHHHHHHHHHTTEEEEEE
T ss_pred c-----CCHHHHHHHHHHhcCCCCEEEEEeCCC----chHHHHHHHHHHHHcCCeEeEE
Confidence 2 367899999999999999999874311 1222445667777888877643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=115.59 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=88.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||+|||+|.++..|++.+ ..++++|+++.+++.|+++ +. ++.+...|....+
T Consensus 64 ~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 138 (210)
T 3lbf_A 64 YMVARMTELLELTPQS--RVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW 138 (210)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC
Confidence 4455566666655544 99999999999999999883 4788999999999999876 33 4788888887776
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
.++++||+|++..+++++.+ ++.++|||||+++++.++
T Consensus 139 ~~~~~~D~i~~~~~~~~~~~-------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 139 QARAPFDAIIVTAAPPEIPT-------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGGCCEEEEEESSBCSSCCT-------HHHHTEEEEEEEEEEECS
T ss_pred ccCCCccEEEEccchhhhhH-------HHHHhcccCcEEEEEEcC
Confidence 66789999999999977762 689999999999999874
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.6e-11 Score=117.37 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcc
Q 007645 183 ADKYIDKLKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLG 254 (595)
Q Consensus 183 a~~yi~~L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d 254 (595)
.+.+.+.+.+.+... .+ .+|||+|||+|.++..++.++. ..++++|+++.+++.|+++ +. ++.+...|
T Consensus 37 ~~~~~~~l~~~l~~~~~~--~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d 112 (201)
T 2ift_A 37 GDRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS 112 (201)
T ss_dssp -CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred HHHHHHHHHHHHHHhcCC--CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECC
Confidence 344455555554432 33 3899999999999998887754 3788999999999999875 43 67888888
Q ss_pred cccCC--CCCCc-eeEEEEcCCCcccccCHHHHHHHH--HhhcCCCcEEEEEcCCCC
Q 007645 255 TRRLP--FPAFS-FDIVHCSRCLIPFTAYNATYLIEV--DRLLRPGGYLVISGPPVQ 306 (595)
Q Consensus 255 ~~~LP--fpd~s-FDlV~~s~vL~h~~~d~~~~L~Ei--~RvLRPGG~lvls~p~~~ 306 (595)
+..+. +++++ ||+|++...+ +. .+...++.++ .|+|||||.++++..+..
T Consensus 113 ~~~~~~~~~~~~~fD~I~~~~~~-~~-~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 113 SLDFLKQPQNQPHFDVVFLDPPF-HF-NLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp HHHHTTSCCSSCCEEEEEECCCS-SS-CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred HHHHHHhhccCCCCCEEEECCCC-CC-ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 76643 24678 9999998875 33 3566788888 778999999999876443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=113.75 Aligned_cols=119 Identities=19% Similarity=0.175 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTR 256 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~ 256 (595)
.....+.+.+.+.+........+|||+|||+|.++..+++++. .++++|+++.+++.|+++ +.++.+...|..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~ 98 (171)
T 1ws6_A 22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE 98 (171)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHH
Confidence 3445566666666543211234899999999999999999865 388999999999998875 446788888765
Q ss_pred c-CC-C--CCCceeEEEEcCCCcccccCHHHHHHHHH--hhcCCCcEEEEEcCCC
Q 007645 257 R-LP-F--PAFSFDIVHCSRCLIPFTAYNATYLIEVD--RLLRPGGYLVISGPPV 305 (595)
Q Consensus 257 ~-LP-f--pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~--RvLRPGG~lvls~p~~ 305 (595)
. ++ + .+++||+|++...++ .+...++..+. ++|||||.++++.++.
T Consensus 99 ~~~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 99 VFLPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred HHHHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 5 22 1 134899999998764 24456677777 9999999999988643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=118.31 Aligned_cols=129 Identities=15% Similarity=0.118 Sum_probs=93.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH----HH----cCC-CeEEEEcccccCCCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA----LE----RGI-PAFVAMLGTRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A----~e----rg~-~~~~~~~d~~~LPfpd~sFDlV~~s 271 (595)
..+|||+|||+|.++..|+++. ....++++|+++.+++.+ ++ .+. ++.+.+.|+..+|+++++ |.|+..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~ 105 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVL 105 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEE
Confidence 3489999999999999999873 346899999999988753 21 233 688999999999998877 888744
Q ss_pred CCCcc----cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc----------hh--HHHHHHHHHHcCcEEEEe
Q 007645 272 RCLIP----FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQD----------KE--WADLQAVARALCYELIAV 331 (595)
Q Consensus 272 ~vL~h----~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~----------~~--w~~l~~la~~~~w~~v~~ 331 (595)
..... +..++..++.++.|+|||||.++++.....|.... .. -..+..++++.+|++...
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~ 181 (218)
T 3mq2_A 106 MPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADC 181 (218)
T ss_dssp SCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceee
Confidence 32211 22355789999999999999999975422222111 11 223777888999988754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=119.13 Aligned_cols=143 Identities=9% Similarity=0.113 Sum_probs=104.6
Q ss_pred CcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEE
Q 007645 177 TMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFV 250 (595)
Q Consensus 177 ~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~ 250 (595)
..|..........+.+.+. . ..+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++ ++. +.+
T Consensus 106 ~~f~~~~~~~~~~l~~~~~--~--~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~ 179 (278)
T 2frn_A 106 IMFSPANVKERVRMAKVAK--P--DELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSA 179 (278)
T ss_dssp SCCCGGGHHHHHHHHHHCC--T--TCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEE
T ss_pred eeEcCCcHHHHHHHHHhCC--C--CCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence 4444444444455555542 2 348999999999999999998653 688999999999998875 443 778
Q ss_pred EEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 251 AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 251 ~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
..+|+..++. +++||+|++.... ....++.++.++|||||.+++.+..............+.+.+++.+|+...
T Consensus 180 ~~~D~~~~~~-~~~fD~Vi~~~p~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 180 YNMDNRDFPG-ENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ECSCTTTCCC-CSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred EECCHHHhcc-cCCccEEEECCch-----hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 8899888776 7899999986432 345789999999999999999765221111123356788889999998765
Q ss_pred e
Q 007645 331 V 331 (595)
Q Consensus 331 ~ 331 (595)
.
T Consensus 254 ~ 254 (278)
T 2frn_A 254 L 254 (278)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-11 Score=116.85 Aligned_cols=109 Identities=9% Similarity=0.013 Sum_probs=87.3
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d~~~LPf 260 (595)
....+.+.+.+....+. +|||+|||+|.++..+++.+ ..++++|+++.+++.|+++.. ++.+...|......
T Consensus 56 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~ 130 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE 130 (231)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc
Confidence 34555666666555444 89999999999999999885 478899999999999998732 67888888766333
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
++++||+|++..+++|+. .++.++|||||++++..++
T Consensus 131 ~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcC
Confidence 467899999999997765 3689999999999998763
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.5e-11 Score=121.62 Aligned_cols=127 Identities=20% Similarity=0.159 Sum_probs=96.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
..+|||||||+|.++..++++. ....++++|+ +.+++.|+++ + ..+.+...|.. .+++. +||+|++.+++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 4599999999999999999873 2347788899 9999998865 3 35888888876 46665 89999999999
Q ss_pred cccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc---------------hhHHHHHHHHHHcCcEEEEe
Q 007645 275 IPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWPKQD---------------KEWADLQAVARALCYELIAV 331 (595)
Q Consensus 275 ~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~---------------~~w~~l~~la~~~~w~~v~~ 331 (595)
++|.++ ...+|+++.++|||||++++.++...-.... ....++++++++.+|+.+..
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 998732 3689999999999999999987622111110 11334777888888887754
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.7e-11 Score=125.36 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=83.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC--CCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL--PFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L--Pfpd~sFDlV~~s~ 272 (595)
..+|||||||+|.++..++++. ....++++|+ +.+++.|+++ +. ++.+...|.... |++ ++||+|++..
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~ 256 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ 256 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence 4589999999999999999873 2347889999 9999999876 32 478888888765 566 7899999999
Q ss_pred CCcccccC-HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAY-NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++|.+. ...+|+++.++|||||++++.++
T Consensus 257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 99988732 34889999999999999999875
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=120.04 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=91.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..+++.+. .+.++|+++.+++.|+++ +..+.+...+.... +++++||+|+++...+
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLLVANLYAE- 195 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEEEEECCHH-
T ss_pred CCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEEEECCcHH-
Confidence 34899999999999999998865 788999999999998875 44567777765542 4567899999976542
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
....++.++.++|||||++++++.. ......+.+.+++.+|+.+..
T Consensus 196 ---~~~~~l~~~~~~LkpgG~lils~~~------~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 196 ---LHAALAPRYREALVPGGRALLTGIL------KDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEE------GGGHHHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEEeec------cCCHHHHHHHHHHCCCEEEEE
Confidence 2467899999999999999998641 122456778888889988654
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.3e-11 Score=117.78 Aligned_cols=121 Identities=19% Similarity=0.116 Sum_probs=93.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCC---CCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFP---AFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfp---d~sFDlV~~s~ 272 (595)
..+|||||||+|..+..|+... ....++++|+++.++++|+++ ++ ++.+...+++.++.. +++||+|+|..
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 4589999999999999988763 235789999999999998875 55 488888888877653 47999999965
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+ .+...++.++.++|||||+|++.... + .......+.+.++.++++....
T Consensus 160 ~-----~~~~~ll~~~~~~LkpgG~l~~~~g~--~--~~~e~~~~~~~l~~~G~~~~~~ 209 (249)
T 3g89_A 160 V-----APLCVLSELLLPFLEVGGAAVAMKGP--R--VEEELAPLPPALERLGGRLGEV 209 (249)
T ss_dssp S-----CCHHHHHHHHGGGEEEEEEEEEEECS--C--CHHHHTTHHHHHHHHTEEEEEE
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEEeCC--C--cHHHHHHHHHHHHHcCCeEEEE
Confidence 3 25678999999999999999886531 1 1223445667778888887644
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-11 Score=121.84 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=94.6
Q ss_pred cHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEE-EcccccCC-
Q 007645 182 GADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVA-MLGTRRLP- 259 (595)
Q Consensus 182 ~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~-~~d~~~LP- 259 (595)
+...+... .+.+.... ...+|||+|||||.++..|++++. ..++++|+++.|++.++++...+... ..++..++
T Consensus 69 g~~Kl~~~-l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~ 144 (291)
T 3hp7_A 69 GGLKLEKA-LAVFNLSV-EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEP 144 (291)
T ss_dssp THHHHHHH-HHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCG
T ss_pred hHHHHHHH-HHhcCCCc-cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecch
Confidence 34444443 34443321 234899999999999999998853 37889999999999877665544332 22333333
Q ss_pred --CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----------Cch-----hHHHHHHHHH
Q 007645 260 --FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK----------QDK-----EWADLQAVAR 322 (595)
Q Consensus 260 --fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----------~~~-----~w~~l~~la~ 322 (595)
++..+||+|+|..+++++ ..+|.++.|+|||||.+++...|..-.. .+. .-+++.++++
T Consensus 145 ~~l~~~~fD~v~~d~sf~sl----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~ 220 (291)
T 3hp7_A 145 VDFTEGLPSFASIDVSFISL----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAV 220 (291)
T ss_dssp GGCTTCCCSEEEECCSSSCG----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCEEEEEeeHhhH----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHH
Confidence 344569999998888543 6689999999999999999743211000 011 1334667788
Q ss_pred HcCcEEEEe
Q 007645 323 ALCYELIAV 331 (595)
Q Consensus 323 ~~~w~~v~~ 331 (595)
..+|.....
T Consensus 221 ~~Gf~v~~~ 229 (291)
T 3hp7_A 221 DYGFSVKGL 229 (291)
T ss_dssp HTTEEEEEE
T ss_pred HCCCEEEEE
Confidence 899987654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=7.5e-11 Score=121.72 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=81.7
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCcee
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFD 266 (595)
.++....+. +|||||||+|.+++.++.+- ....++++|+++.+++.|+++ +. ++.+.++|+..+| +++||
T Consensus 116 ~la~l~~g~--rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FD 190 (298)
T 3fpf_A 116 ALGRFRRGE--RAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFD 190 (298)
T ss_dssp HHTTCCTTC--EEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCS
T ss_pred HHcCCCCcC--EEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcC
Confidence 344455544 99999999998776554431 245899999999999999876 54 5788898888775 78999
Q ss_pred EEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|++... .++...++.++.|+|||||++++...
T Consensus 191 vV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 191 VLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 9998654 24778999999999999999999764
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=121.14 Aligned_cols=137 Identities=14% Similarity=0.115 Sum_probs=100.6
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPfp 261 (595)
..+.+.++... ..+|||||||+|.++..++++. ....++++|+ +.+++.|+++ + .++.+...|.. .+++
T Consensus 192 ~~l~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p 266 (369)
T 3gwz_A 192 GQVAAAYDFSG--AATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIP 266 (369)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCC
T ss_pred HHHHHhCCCcc--CcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCC
Confidence 34445554333 4599999999999999999873 3447788999 9999988865 3 35888888876 5666
Q ss_pred CCceeEEEEcCCCcccccCHH--HHHHHHHhhcCCCcEEEEEcCCCCCCCC-----------------chhHHHHHHHHH
Q 007645 262 AFSFDIVHCSRCLIPFTAYNA--TYLIEVDRLLRPGGYLVISGPPVQWPKQ-----------------DKEWADLQAVAR 322 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~--~~L~Ei~RvLRPGG~lvls~p~~~~~~~-----------------~~~w~~l~~la~ 322 (595)
. .||+|++..++++|. +.. .+|+++.++|||||++++.+....-... ....++++++++
T Consensus 267 ~-~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~ 344 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWD-DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLE 344 (369)
T ss_dssp S-SCSEEEEESCGGGSC-HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHH
T ss_pred C-CceEEEhhhhhccCC-HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHH
Confidence 6 899999999998887 333 7999999999999999997752111000 011334667888
Q ss_pred HcCcEEEEe
Q 007645 323 ALCYELIAV 331 (595)
Q Consensus 323 ~~~w~~v~~ 331 (595)
+.+|+.+..
T Consensus 345 ~aGf~~~~~ 353 (369)
T 3gwz_A 345 KSGLRVERS 353 (369)
T ss_dssp TTTEEEEEE
T ss_pred HCCCeEEEE
Confidence 888887754
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-11 Score=121.26 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=80.2
Q ss_pred cceEEEECCCCcH----HHHHHhhc-CC-c-eEEEEeecCcHHHHHHHHHcC----------------------------
Q 007645 201 LRTALDMGCGVAS----FGGSMLSE-NI-L-TLSFAPRDSHKAQIQFALERG---------------------------- 245 (595)
Q Consensus 201 ~r~VLDIGCGtG~----~a~~La~~-gv-~-~~~v~~vD~s~~~l~~A~erg---------------------------- 245 (595)
..+|||+|||+|. ++..|++. +. . ...+.++|+|+.+++.|++..
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 3589999999997 56666654 21 1 258999999999999998751
Q ss_pred --------CCeEEEEcccccCCCC-CCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 246 --------IPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 246 --------~~~~~~~~d~~~LPfp-d~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
..+.|.+.|+...|++ .+.||+|+|.++++++.+ ....++.++.+.|+|||+|++..
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 1367788888776665 578999999999988752 22689999999999999999854
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=7.9e-11 Score=115.20 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=72.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH----HHHHcCCCeEEEEccccc----CCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ----FALERGIPAFVAMLGTRR----LPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~----~A~erg~~~~~~~~d~~~----LPfpd~sFDlV~~s~ 272 (595)
..+|||+|||+|.++..|++... ...++++|+|+.+++ .|+++ .++.+...|+.. .+++ ++||+|+|..
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 34899999999999999988732 347899999998653 44433 356777777655 3555 7999999973
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+ .+...++.++.|+|||||+|+++.+
T Consensus 135 -~~~--~~~~~~l~~~~r~LkpgG~l~i~~~ 162 (210)
T 1nt2_A 135 -AQK--NQIEILKANAEFFLKEKGEVVIMVK 162 (210)
T ss_dssp -CST--THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -cCh--hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 222 2334569999999999999999853
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-11 Score=113.05 Aligned_cols=112 Identities=20% Similarity=0.124 Sum_probs=87.6
Q ss_pred CcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCCC---CCCceeEEEEcCCCc
Q 007645 200 TLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPF---PAFSFDIVHCSRCLI 275 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LPf---pd~sFDlV~~s~vL~ 275 (595)
...+|||+|||. +.+|+|+.|++.|+++.. ++.+.+.++..+++ ++++||+|+|+.+++
T Consensus 12 ~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~ 74 (176)
T 2ld4_A 12 AGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPG 74 (176)
T ss_dssp TTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTT
T ss_pred CCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhh
Confidence 345999999996 127999999999998843 47888889888887 889999999999997
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCC---CchhHHHHHHHHHHcCcEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPK---QDKEWADLQAVARALCYELI 329 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~---~~~~w~~l~~la~~~~w~~v 329 (595)
|+..+...++.++.|+|||||+|++..|...... .......+.+++++.+| +.
T Consensus 75 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 75 STTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp CCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred hcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 7735789999999999999999999766221110 11124567888889999 44
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=129.32 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=95.1
Q ss_pred cccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----------C-
Q 007645 178 MFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----------G- 245 (595)
Q Consensus 178 ~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----------g- 245 (595)
.|.......+..+.+.+....+. +|||||||+|.++..++... ....++|+|+++.+++.|+++ |
T Consensus 153 vYGEt~~~~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~-g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl 229 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK 229 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHC-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB
T ss_pred ccCCCCHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455666777788877766655 99999999999999988651 122588999999998888652 3
Q ss_pred --CCeEEEEcccccCCCCC--CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 246 --IPAFVAMLGTRRLPFPA--FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 246 --~~~~~~~~d~~~LPfpd--~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.++.+.++|+..+|+++ ..||+|+++..+ ++ ++....|.++.|+|||||+|+++.+
T Consensus 230 ~~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~-pdl~~aL~Ei~RvLKPGGrIVssE~ 289 (438)
T 3uwp_A 230 KHAEYTLERGDFLSEEWRERIANTSVIFVNNFA-FG-PEVDHQLKERFANMKEGGRIVSSKP 289 (438)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHTCSEEEECCTT-CC-HHHHHHHHHHHTTSCTTCEEEESSC
T ss_pred CCCCeEEEECcccCCccccccCCccEEEEcccc-cC-chHHHHHHHHHHcCCCCcEEEEeec
Confidence 35889999998888754 479999998765 33 4677889999999999999999765
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-11 Score=119.84 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=81.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC-C--CCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL-P--FPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L-P--fpd~sFDlV~~s~ 272 (595)
..+|||||||+|.++..|++... ...+.++|+++.+++.|+++ ++ ++.+...|+..+ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 34899999999999999998743 34789999999999988765 44 578888887664 4 7889999999986
Q ss_pred CCcccccCH--------HHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYN--------ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~--------~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.. +|.... ..++.++.|+|||||+|++++.
T Consensus 114 ~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 54 444221 2599999999999999999874
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.4e-11 Score=112.10 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=80.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC-CCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP-FPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP-fpd~sFDlV~~s~vL 274 (595)
.+|||+|||+|.++..++++.-....++++|+++.+++.|+++ +. ++.+...|+..++ +.+++||+|++...+
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY 103 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc
Confidence 4899999999999999988721123789999999999999876 33 5788888887775 667899999998755
Q ss_pred cc-----cc---cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IP-----FT---AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h-----~~---~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.. .. ++...++.++.++|||||++++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 22 11 1234799999999999999999874
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=120.21 Aligned_cols=118 Identities=14% Similarity=0.056 Sum_probs=88.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCC---cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGV---ASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGt---G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~L 258 (595)
.+++.+.+.+.... ..++|||||||+ |.++..+.+.. ....++++|+|+.|++.|+++. .++.++.+|+.+.
T Consensus 63 ~~~~~~~~~l~~~~-~~~~vLDlGcG~pt~G~~~~~~~~~~-p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~ 140 (274)
T 2qe6_A 63 KVLVRGVRFLAGEA-GISQFLDLGSGLPTVQNTHEVAQSVN-PDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDP 140 (274)
T ss_dssp HHHHHHHHHHHTTT-CCCEEEEETCCSCCSSCHHHHHHHHC-TTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCH
T ss_pred HHHHHHHHHHhhcc-CCCEEEEECCCCCCCChHHHHHHHhC-CCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCc
Confidence 44555555544221 235899999999 98877666542 2357899999999999998873 4578888887542
Q ss_pred C-----------CCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 259 P-----------FPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 259 P-----------fpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
+ ++..+||+|++..+|+|+.+ +...+|.++.++|||||+|+++...
T Consensus 141 ~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 141 EYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLV 198 (274)
T ss_dssp HHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred hhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence 1 33358999999999988763 3789999999999999999998863
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-11 Score=124.39 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=86.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~L 258 (595)
.|.+.+.+......+. +|||||||+|.++..+++++. ..+.++|+++ +++.|+++ +.. +.+..+++..+
T Consensus 53 ~~~~~i~~~~~~~~~~--~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 127 (349)
T 3q7e_A 53 TYRNSMFHNRHLFKDK--VVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV 127 (349)
T ss_dssp HHHHHHHTCHHHHTTC--EEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHhccccCCCC--EEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc
Confidence 3444444433334443 899999999999999999853 4788999994 88887754 443 78999999999
Q ss_pred CCCCCceeEEEEcCCCccc--ccCHHHHHHHHHhhcCCCcEEEE
Q 007645 259 PFPAFSFDIVHCSRCLIPF--TAYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~--~~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
++++++||+|+|..+..++ ..+...++.++.|+|||||+++.
T Consensus 128 ~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 128 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 9999999999997653322 25678899999999999999974
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=114.99 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=98.6
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc-----C-CCeEEEEcccccCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER-----G-IPAFVAMLGTRRLPF 260 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er-----g-~~~~~~~~d~~~LPf 260 (595)
..+.+.+....+. +|||+|||+|.++..+++. +. ...+.++|+++.+++.|+++ + .++.+...|....++
T Consensus 86 ~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 86 SAMVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGE-KGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC
T ss_pred HHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC
Confidence 4455555555544 9999999999999999987 32 24788999999999999876 4 357888889888888
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++++||+|++. +. ++..++.++.++|||||++++..+.. ....++.+.+++.+|..+..
T Consensus 163 ~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~~gf~~~~~ 221 (258)
T 2pwy_A 163 EEAAYDGVALD-----LM-EPWKVLEKAALALKPDRFLVAYLPNI------TQVLELVRAAEAHPFRLERV 221 (258)
T ss_dssp CTTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEESCH------HHHHHHHHHHTTTTEEEEEE
T ss_pred CCCCcCEEEEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeCCH------HHHHHHHHHHHHCCCceEEE
Confidence 88899999983 22 55678999999999999999988621 22345555666678876544
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-10 Score=120.60 Aligned_cols=109 Identities=23% Similarity=0.255 Sum_probs=85.1
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd 262 (595)
.+.+.++... ..+|||||||+|.++..++++. ....++++|+ +.+++.|+++ ++ ++.+...|... +++.
T Consensus 173 ~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 173 APADAYDWSA--VRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV 247 (374)
T ss_dssp HHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC
T ss_pred HHHHhCCCCC--CCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC
Confidence 4444444333 4499999999999999999874 2347888999 9999998875 33 47888888754 4443
Q ss_pred CceeEEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.||+|++..+++||.+.. ..+|.++.++|||||++++.+.
T Consensus 248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 499999999998887322 4899999999999999999875
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=8.7e-11 Score=123.28 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=87.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~ 257 (595)
..|.+.+.+.+....+. +|||||||+|.++..+++++. ..+.++|+++ +++.|+++ + .++.+..+++..
T Consensus 50 ~~~~~~i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhhhhcCCC--EEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHH
Confidence 34556666665555544 899999999999999998853 4788999996 88888765 3 358889999999
Q ss_pred CCCCCCceeEEEEcCC---CcccccCHHHHHHHHHhhcCCCcEEE
Q 007645 258 LPFPAFSFDIVHCSRC---LIPFTAYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 258 LPfpd~sFDlV~~s~v---L~h~~~d~~~~L~Ei~RvLRPGG~lv 299 (595)
+++++++||+|++..+ +.+ ..+...++.++.|+|||||.++
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~-~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLF-ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTT-TCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCcEEEEEEcCchhhccC-HHHHHHHHHHHHhhcCCCcEEE
Confidence 9998899999999763 322 2355789999999999999997
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-10 Score=112.62 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=88.5
Q ss_pred cHHHHHHHHHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccc
Q 007645 182 GADKYIDKLKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGT 255 (595)
Q Consensus 182 ~a~~yi~~L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~ 255 (595)
....+.+.+.+.+... .+ .+|||+|||+|.++..++.++. ..++++|+++.+++.|+++ +. ++.+.+.|+
T Consensus 37 ~~~~~~~~l~~~l~~~~~~--~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~ 112 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA 112 (202)
T ss_dssp -CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CHHHHHHHHHHHHHhhcCC--CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence 3445555566555432 33 3899999999999999887754 2789999999999999865 43 678888887
Q ss_pred cc-CCCCCCceeEEEEcCCCcccccCHHHHHHHHHh--hcCCCcEEEEEcCC
Q 007645 256 RR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGGYLVISGPP 304 (595)
Q Consensus 256 ~~-LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~R--vLRPGG~lvls~p~ 304 (595)
.. ++..+++||+|++...+ +. .+...++.++.+ +|+|||+++++..+
T Consensus 113 ~~~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 113 MSFLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 66 56667899999998775 33 356778888865 59999999998753
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-11 Score=110.37 Aligned_cols=120 Identities=16% Similarity=0.061 Sum_probs=89.8
Q ss_pred cccHHHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEE
Q 007645 180 ADGADKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAM 252 (595)
Q Consensus 180 ~~~a~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~ 252 (595)
......+.+.+.+.+.. .. ..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++ ++.+..
T Consensus 25 rp~~~~~~~~~~~~l~~~~~--~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~ 100 (187)
T 2fhp_A 25 RPTTDKVKESIFNMIGPYFD--GGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100 (187)
T ss_dssp CCCCHHHHHHHHHHHCSCCS--SCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE
T ss_pred CcCHHHHHHHHHHHHHhhcC--CCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEE
Confidence 34456677777776642 23 34899999999999999888643 4789999999999998865 43 478888
Q ss_pred cccccC----CCCCCceeEEEEcCCCcccccCHHHHHHHH--HhhcCCCcEEEEEcCCC
Q 007645 253 LGTRRL----PFPAFSFDIVHCSRCLIPFTAYNATYLIEV--DRLLRPGGYLVISGPPV 305 (595)
Q Consensus 253 ~d~~~L----Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei--~RvLRPGG~lvls~p~~ 305 (595)
.|+... ++++++||+|++...++ . .+....+..+ .++|+|||.+++..+..
T Consensus 101 ~d~~~~~~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 101 MDANRALEQFYEEKLQFDLVLLDPPYA-K-QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCCGG-G-CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CcHHHHHHHHHhcCCCCCEEEECCCCC-c-hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 886552 23368899999987753 2 3556777777 89999999999987643
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-11 Score=117.98 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=79.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----------C-CCeEEEEccccc-CC--CCCCcee
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----------G-IPAFVAMLGTRR-LP--FPAFSFD 266 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----------g-~~~~~~~~d~~~-LP--fpd~sFD 266 (595)
..+|||||||+|.++..|++.. ....+.++|+++.+++.|+++ + .++.+..+|+.. ++ +++++||
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 47 QVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 3489999999999999999874 235789999999999988643 2 357888998876 66 7889999
Q ss_pred EEEEcCCCcccccC--------HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTAY--------NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~d--------~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.|++.+.- +|... ...++.++.++|||||.|++.+.
T Consensus 126 ~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 126 KMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred EEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 99976543 33211 14689999999999999999864
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-10 Score=117.88 Aligned_cols=137 Identities=12% Similarity=0.144 Sum_probs=99.3
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------CCCeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------g~~~~~~~~d~~~LPfp 261 (595)
..+.+.++... .+|||+|||+|.++..++++. ....++++|+ +.+++.|+++ ...+.+...|... +++
T Consensus 158 ~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 231 (334)
T 2ip2_A 158 HEIPRLLDFRG---RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP 231 (334)
T ss_dssp HHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC
T ss_pred HHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC
Confidence 44455554332 599999999999999999873 2347889999 9999988876 2357888888766 565
Q ss_pred CCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCCCCC------------------chhHHHHHHHHH
Q 007645 262 AFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWPKQ------------------DKEWADLQAVAR 322 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~------------------~~~w~~l~~la~ 322 (595)
++||+|++..++++|.+. ...+|+++.++|||||++++.+....-... ...-.++.++++
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 310 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLG 310 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHH
Confidence 679999999999888622 238999999999999999998752111100 011234667777
Q ss_pred HcCcEEEEe
Q 007645 323 ALCYELIAV 331 (595)
Q Consensus 323 ~~~w~~v~~ 331 (595)
+.+|+.+..
T Consensus 311 ~aGf~~~~~ 319 (334)
T 2ip2_A 311 RGGFAVERI 319 (334)
T ss_dssp HTTEEEEEE
T ss_pred HCCCceeEE
Confidence 888876644
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-10 Score=121.28 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=101.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC----CeEEEEcccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI----PAFVAMLGTR 256 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~----~~~~~~~d~~ 256 (595)
.-.+.+.+.++...+ .+|||+|||+|.++..+++++ ....++++|+++.+++.|+++ ++ ++.+...|..
T Consensus 209 ~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~ 285 (375)
T 4dcm_A 209 IGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285 (375)
T ss_dssp HHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT
T ss_pred HHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh
Confidence 334455666765544 489999999999999999984 235889999999999998865 32 3677888876
Q ss_pred cCCCCCCceeEEEEcCCCcccc---cC-HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFT---AY-NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~---~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
. ++++++||+|+|+..+++.. .. ...++.++.++|||||.++++.+.. ... ...+++.+. ..+.+...
T Consensus 286 ~-~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~---~~~--~~~l~~~fg--~~~~~a~~ 357 (375)
T 4dcm_A 286 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH---LDY--FHKLKKIFG--NCTTIATN 357 (375)
T ss_dssp T-TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT---SCH--HHHHHHHHS--CCEEEEEC
T ss_pred c-cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC---cCH--HHHHHHhcC--CEEEEeeC
Confidence 5 56778999999998885421 12 2368999999999999999987421 111 223444444 46666666
Q ss_pred cceeEeec
Q 007645 333 GNTVIWKK 340 (595)
Q Consensus 333 ~~~~iw~K 340 (595)
....|++.
T Consensus 358 ~~F~V~~~ 365 (375)
T 4dcm_A 358 NKFVVLKA 365 (375)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEE
Confidence 66666554
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-10 Score=119.58 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=88.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
.+.+.+.++... ..+|||||||+|.++..++++. ....++++|+ +.+++.|+++ +. .+.+...|....|+
T Consensus 179 ~~~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 254 (359)
T 1x19_A 179 IQLLLEEAKLDG--VKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY 254 (359)
T ss_dssp HHHHHHHCCCTT--CCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred HHHHHHhcCCCC--CCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence 345555555443 4499999999999999999873 2347888999 9999988875 33 38888999888777
Q ss_pred CCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 PAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++. |+|++..++++|.+ +...+|+++.++|||||++++.+.
T Consensus 255 ~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 255 PEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp CCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred CCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 654 99999999999873 257899999999999999988773
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-11 Score=108.49 Aligned_cols=94 Identities=13% Similarity=0.023 Sum_probs=75.8
Q ss_pred ceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~sFDlV~~s~ 272 (595)
.+|||+|||+|.++..+++. +. ...++++|+++ +++. .++.+...|...++ +++++||+|++..
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~-~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~ 96 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGG-KGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDM 96 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCT-TCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEeCCCCCHHHHHHHHHhCC-CCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence 48999999999999999887 32 24788899988 6533 45778888887776 7788999999988
Q ss_pred CCcccccCH-----------HHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYN-----------ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~-----------~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++.. +. ..++.++.++|||||.++++++
T Consensus 97 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 97 APNMSG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 875432 33 5889999999999999999875
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=117.21 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=85.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
+.+.+.+.+.++. ..+|||+|||+|.++..++.....+ .+.++|+++.|+++++++ |....+...|....
T Consensus 37 d~fY~~~~~~l~~----~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~- 110 (200)
T 3fzg_A 37 NDFYTYVFGNIKH----VSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD- 110 (200)
T ss_dssp HHHHHHHHHHSCC----CSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-
T ss_pred HHHHHHHHhhcCC----CCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-
Confidence 3444445555532 4489999999999999998774444 899999999999999876 55534444555433
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+.++||+|++..+++++ ++.+..+.++.+.|||||+|+-..
T Consensus 111 ~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 111 VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 356889999999999887 566677779999999999998765
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=117.79 Aligned_cols=128 Identities=10% Similarity=0.094 Sum_probs=93.0
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----CC-CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----GI-PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g~-~~~~~~~d~~~LPfpd 262 (595)
.+.+.+....+. +|||+|||+|.++..+++.-.....++++|+++.+++.|+++ +. ++.+...|+.. ++++
T Consensus 101 ~~~~~~~~~~~~--~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~ 177 (275)
T 1yb2_A 101 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISD 177 (275)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCS
T ss_pred HHHHHcCCCCcC--EEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcC
Confidence 344445544444 999999999999999988611234788999999999999876 43 57888888766 6777
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++||+|++ +.+ ++..++.++.++|||||+++++++.. .....+.+.+++.+|..+..
T Consensus 178 ~~fD~Vi~-----~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~------~~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 178 QMYDAVIA-----DIP-DPWNHVQKIASMMKPGSVATFYLPNF------DQSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp CCEEEEEE-----CCS-CGGGSHHHHHHTEEEEEEEEEEESSH------HHHHHHHHHSGGGTEEEEEE
T ss_pred CCccEEEE-----cCc-CHHHHHHHHHHHcCCCCEEEEEeCCH------HHHHHHHHHHHHCCCeEEEE
Confidence 89999998 333 56788999999999999999998621 12344555666678876644
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-11 Score=117.26 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=87.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCc-HHHHHHH---HHc----CC-CeEEEEcccccCCCC-CCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSH-KAQIQFA---LER----GI-PAFVAMLGTRRLPFP-AFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s-~~~l~~A---~er----g~-~~~~~~~d~~~LPfp-d~sFDlV~~ 270 (595)
..+|||||||+|.++..|+++. ....++++|+| +.+++.| +++ +. ++.+..+++..+|.. ...+|.|++
T Consensus 25 ~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~ 103 (225)
T 3p2e_A 25 DRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI 103 (225)
T ss_dssp SEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred CCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence 3489999999999999998653 34689999999 7777766 433 43 578888898888632 256777776
Q ss_pred cCCCc----ccccCHHHHHHHHHhhcCCCcEEEEEcC-CCCCC----------CCchhH---HHHHHHHHHcCcEEEEe
Q 007645 271 SRCLI----PFTAYNATYLIEVDRLLRPGGYLVISGP-PVQWP----------KQDKEW---ADLQAVARALCYELIAV 331 (595)
Q Consensus 271 s~vL~----h~~~d~~~~L~Ei~RvLRPGG~lvls~p-~~~~~----------~~~~~w---~~l~~la~~~~w~~v~~ 331 (595)
++.+. ++..+...++.++.|+|||||+|++... ...+. .....| .++.+++++.+|++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~ 182 (225)
T 3p2e_A 104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDV 182 (225)
T ss_dssp ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEE
T ss_pred eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeee
Confidence 65432 1112345789999999999999999332 11110 000112 12777888889987754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-10 Score=112.65 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=87.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEccccc----CCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRR----LPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~----LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|++... ...+.++|+++.+++.|+++. .++.+...|+.. ++++ ++||+|++
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~--- 149 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYE--- 149 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEE---
T ss_pred CCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEE---
Confidence 34899999999999999998722 347889999999999888763 357788888877 7776 78999993
Q ss_pred CcccccCH---HHHHHHHHhhcCCCcEEEEEcCCCCCCCC--chh-H-HHHHHHHHHcCcEEEEe
Q 007645 274 LIPFTAYN---ATYLIEVDRLLRPGGYLVISGPPVQWPKQ--DKE-W-ADLQAVARALCYELIAV 331 (595)
Q Consensus 274 L~h~~~d~---~~~L~Ei~RvLRPGG~lvls~p~~~~~~~--~~~-w-~~l~~la~~~~w~~v~~ 331 (595)
+.. ++ ..++.++.++|||||+++++......... ... . ..+. ++++.+|+.+..
T Consensus 150 --~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~ 210 (230)
T 1fbn_A 150 --DVA-QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDE 210 (230)
T ss_dssp --CCC-STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEE
T ss_pred --ecC-ChhHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEE
Confidence 222 33 67799999999999999996321101100 001 1 3455 667778877654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=114.96 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
...+++.+.+.+. .. ..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +. ++.+...|...
T Consensus 95 te~l~~~~l~~~~-~~--~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~ 170 (276)
T 2b3t_A 95 TECLVEQALARLP-EQ--PCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS 170 (276)
T ss_dssp HHHHHHHHHHHSC-SS--CCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG
T ss_pred HHHHHHHHHHhcc-cC--CCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhh
Confidence 4566677777665 22 3489999999999999998662 234789999999999998876 44 47788887655
Q ss_pred CCCCCCceeEEEEcCCCccc-------------c-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh
Q 007645 258 LPFPAFSFDIVHCSRCLIPF-------------T-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~-------------~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~ 313 (595)
++++++||+|+++..++.. + .....++.++.++|||||++++..+. ..
T Consensus 171 -~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~ 242 (276)
T 2b3t_A 171 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-------QQ 242 (276)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-------SC
T ss_pred -hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-------hH
Confidence 3446789999998543221 1 12357889999999999999998641 12
Q ss_pred HHHHHHHHHHcCcEEE
Q 007645 314 WADLQAVARALCYELI 329 (595)
Q Consensus 314 w~~l~~la~~~~w~~v 329 (595)
-..+.+++++.+|+.+
T Consensus 243 ~~~~~~~l~~~Gf~~v 258 (276)
T 2b3t_A 243 GEAVRQAFILAGYHDV 258 (276)
T ss_dssp HHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHCCCcEE
Confidence 3457777777787643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=121.02 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=100.2
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfp 261 (595)
..+.+.+.+....+ .+|||+|||+|.++..+++++. ...++++|+++.+++.|+++ +....+...|.... .
T Consensus 184 ~~~~ll~~l~~~~~--~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~--~ 258 (343)
T 2pjd_A 184 GSQLLLSTLTPHTK--GKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE--V 258 (343)
T ss_dssp HHHHHHHHSCTTCC--SBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT--C
T ss_pred HHHHHHHhcCcCCC--CeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc--c
Confidence 34555666643333 3899999999999999998853 23788999999999998875 56667777776543 4
Q ss_pred CCceeEEEEcCCCccc----ccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeecceeE
Q 007645 262 AFSFDIVHCSRCLIPF----TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDGNTVI 337 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~----~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~~~i 337 (595)
+++||+|+|+.++++. ..+...++.++.|+|||||.+++..+... .. ...+.+... .++.+.......+
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~---~~--~~~l~~~f~--~~~~~~~~~gf~v 331 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL---PY--PDVLDETFG--FHEVIAQTGRFKV 331 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS---SH--HHHHHHHHS--CCEEEEECSSEEE
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC---Cc--HHHHHHhcC--ceEEEeeCCCEEE
Confidence 6899999999988541 13456899999999999999999875211 11 122334433 4566666666665
Q ss_pred ee
Q 007645 338 WK 339 (595)
Q Consensus 338 w~ 339 (595)
++
T Consensus 332 ~~ 333 (343)
T 2pjd_A 332 YR 333 (343)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-11 Score=117.63 Aligned_cols=135 Identities=9% Similarity=0.007 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~L 258 (595)
..+++.+.+.+.. .. ..+|||+|||+|.++..+++.. ....++++|+++.+++.|+++. .++.+.+.|+..
T Consensus 15 ~~~~~~~~~~l~~~~~--~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~- 90 (215)
T 4dzr_A 15 EVLVEEAIRFLKRMPS--GTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE- 90 (215)
T ss_dssp HHHHHHHHHHHTTCCT--TEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC-------------------CCHHHHHH-
T ss_pred HHHHHHHHHHhhhcCC--CCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-
Confidence 4456666666654 33 4489999999999999999884 3458999999999999998763 245566666655
Q ss_pred CCCC-----CceeEEEEcCCCcccc------cC-------------------HHHHHHHHHhhcCCCcE-EEEEcCCCCC
Q 007645 259 PFPA-----FSFDIVHCSRCLIPFT------AY-------------------NATYLIEVDRLLRPGGY-LVISGPPVQW 307 (595)
Q Consensus 259 Pfpd-----~sFDlV~~s~vL~h~~------~d-------------------~~~~L~Ei~RvLRPGG~-lvls~p~~~~ 307 (595)
++++ ++||+|+|+..+++.. .. ...++.++.++|||||+ +++..+ +
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~ 167 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG---H 167 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT---T
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC---C
Confidence 5555 8999999975543221 00 05778899999999999 555543 1
Q ss_pred CCCchhHHHHHHHHH--HcCcEEE
Q 007645 308 PKQDKEWADLQAVAR--ALCYELI 329 (595)
Q Consensus 308 ~~~~~~w~~l~~la~--~~~w~~v 329 (595)
.....+.++++ +.+|..+
T Consensus 168 ----~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 168 ----NQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp ----SCHHHHHHHTGGGGGGTEEC
T ss_pred ----ccHHHHHHHHHHhhcCCceE
Confidence 12345666777 6777554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-11 Score=111.46 Aligned_cols=115 Identities=12% Similarity=0.054 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcc-ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 184 DKYIDKLKQYIP-ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~-~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
+...+.+.+.+. ... ..+|||+|||+|.++..+++++. ..++++|+++.+++.|+++ +. ++.+...|+.
T Consensus 16 ~~~~~~~~~~l~~~~~--~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 91 (177)
T 2esr_A 16 DKVRGAIFNMIGPYFN--GGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE 91 (177)
T ss_dssp --CHHHHHHHHCSCCC--SCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred HHHHHHHHHHHHhhcC--CCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence 334455555554 233 34899999999999999998742 4789999999999999875 33 3678888765
Q ss_pred c-CCCCCCceeEEEEcCCCcccccCHHHHHHHHH--hhcCCCcEEEEEcCC
Q 007645 257 R-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD--RLLRPGGYLVISGPP 304 (595)
Q Consensus 257 ~-LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~--RvLRPGG~lvls~p~ 304 (595)
. ++..+++||+|++...++ . ......+..+. ++|+|||.+++..+.
T Consensus 92 ~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 92 RAIDCLTGRFDLVFLDPPYA-K-ETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHHHHBCSCEEEEEECCSSH-H-HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HhHHhhcCCCCEEEECCCCC-c-chHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 5 344456799999987652 2 23456677776 999999999998764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=120.14 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=88.1
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||||||+|.++..+++.+.....++++|+++.+++.|+++ +. ++.+...|....+
T Consensus 62 ~~~~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~ 139 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV 139 (317)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence 4455666666655544 999999999999999998744334688999999999999876 43 4788888887765
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.++++||+|++..+++|+. .++.++|||||+++++..
T Consensus 140 ~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 140 PEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBC
T ss_pred ccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEEC
Confidence 5668999999999997765 478899999999999875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=111.60 Aligned_cols=111 Identities=13% Similarity=0.073 Sum_probs=84.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||+|||+|.++..+++.......++++|+++.+++.|+++ +. ++.+...+.....
T Consensus 64 ~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 141 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY 141 (215)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC
T ss_pred HHHHHHHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC
Confidence 4445566666555444 999999999999999998742224788999999999999876 33 4777777764322
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
..+++||+|++..+++|+. .++.++|||||++++..++
T Consensus 142 ~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 142 EPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESS
T ss_pred CCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECC
Confidence 2367899999999997765 4889999999999998863
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=122.31 Aligned_cols=113 Identities=17% Similarity=0.148 Sum_probs=88.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~ 257 (595)
..|.+.+.+......+. +|||||||+|.++..+++++. ..++++|++ .+++.|+++ +.. +.+..+++..
T Consensus 49 ~~~~~~i~~~~~~~~~~--~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 49 DAYFNAVFQNKHHFEGK--TVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHHTTTTTTTTC--EEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHhccccCCCC--EEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence 44556665555444444 999999999999999999864 378899999 888888765 443 7899999999
Q ss_pred CCCCCCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 LPFPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++++ ++||+|+|..+.+... .....++.++.++|||||.+++..
T Consensus 124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 8887 8999999966443332 356789999999999999998743
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=118.64 Aligned_cols=140 Identities=16% Similarity=0.133 Sum_probs=100.9
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC-CC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP-FP 261 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP-fp 261 (595)
.+.+.++... ...+|||||||+|.++..++++.. ...++++|+ +.+++.|+++ +. .+.+...|....+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 4445554443 145999999999999999998733 357788899 6788877764 33 4788888877765 23
Q ss_pred CCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCCC--------------------CchhHHHHHHH
Q 007645 262 AFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWPK--------------------QDKEWADLQAV 320 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~--------------------~~~~w~~l~~l 320 (595)
.+.||+|++..+++||.+ +...+|+++.++|||||++++.++...-.. ......+++++
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 466999999999988873 236899999999999999999874211110 01113447788
Q ss_pred HHHcCcEEEEe
Q 007645 321 ARALCYELIAV 331 (595)
Q Consensus 321 a~~~~w~~v~~ 331 (595)
+++.||+.+..
T Consensus 326 l~~aGf~~~~~ 336 (352)
T 3mcz_A 326 VRDAGLAVGER 336 (352)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCceeee
Confidence 88999988763
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-10 Score=113.11 Aligned_cols=110 Identities=12% Similarity=0.069 Sum_probs=84.3
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCC---------eEEEEcccccC---
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIP---------AFVAMLGTRRL--- 258 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~---------~~~~~~d~~~L--- 258 (595)
...+.... ..+|||+|||+|.++..|+++.. ...++++|+++.+++.|+++... +.+...|+..+
T Consensus 29 ~~~~~~~~--~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~ 105 (260)
T 2ozv_A 29 ASLVADDR--ACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA 105 (260)
T ss_dssp HHTCCCCS--CEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred HHHhcccC--CCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence 44444433 34899999999999999998842 46899999999999999986332 78888888776
Q ss_pred ----CCCCCceeEEEEcCCCccc-----------------ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 ----PFPAFSFDIVHCSRCLIPF-----------------TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 ----Pfpd~sFDlV~~s~vL~h~-----------------~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++++||+|+|+..+... ......++.++.++|||||+|++..+
T Consensus 106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 3667899999998443221 12356889999999999999999865
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.6e-10 Score=111.43 Aligned_cols=139 Identities=10% Similarity=0.035 Sum_probs=89.0
Q ss_pred HHHHHHhhcc---ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHH----HHHHHcCCCeEEEEcccccC
Q 007645 186 YIDKLKQYIP---ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI----QFALERGIPAFVAMLGTRRL 258 (595)
Q Consensus 186 yi~~L~~~l~---~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l----~~A~erg~~~~~~~~d~~~L 258 (595)
....+.+.+. ...+ .+|||+|||+|.++..+++.-.....+.++|+++.++ +.|+++ .++.+.+.|+...
T Consensus 61 la~~ll~~l~~~~l~~g--~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~ 137 (232)
T 3id6_C 61 LAGAILKGLKTNPIRKG--TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFP 137 (232)
T ss_dssp HHHHHHTTCSCCSCCTT--CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCG
T ss_pred HHHHHHhhhhhcCCCCC--CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccc
Confidence 3344444443 4444 4999999999999999988622233788999999875 444444 5788888887653
Q ss_pred C---CCCCceeEEEEcCCCcccccCHHHH-HHHHHhhcCCCcEEEEEcCCCC--C-CCCchhHHHHHHHHHHcCcEEEEe
Q 007645 259 P---FPAFSFDIVHCSRCLIPFTAYNATY-LIEVDRLLRPGGYLVISGPPVQ--W-PKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 259 P---fpd~sFDlV~~s~vL~h~~~d~~~~-L~Ei~RvLRPGG~lvls~p~~~--~-~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
. ...++||+|++.... + +.... +..+.++|||||+|+++..+.. + ...........+.+++.+|+.+..
T Consensus 138 ~~~~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~ 213 (232)
T 3id6_C 138 QSYKSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQI 213 (232)
T ss_dssp GGTTTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEE
T ss_pred hhhhccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 2 124689999998654 2 44444 4556669999999999864211 1 111122334445555667887754
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-10 Score=114.66 Aligned_cols=133 Identities=12% Similarity=0.048 Sum_probs=92.1
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEccc---ccCCCCCCceeE
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGT---RRLPFPAFSFDI 267 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~---~~LPfpd~sFDl 267 (595)
+...+|. +|||+|||+|.++..|++.--....+.++|+++.|++.++++. .++..+..+. ...++..+++|+
T Consensus 73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 3455555 9999999999999999987222347889999999999988763 3466666654 344677789999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCC--CC-CCchhHHHHHHHHHHcCcEEEEe
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ--WP-KQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~--~~-~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
|++.... +.+...++.++.|+|||||+++++..... +. .......+..+.+++.+|+.+..
T Consensus 151 Vf~d~~~---~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~ 214 (233)
T 4df3_A 151 LYADVAQ---PEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDV 214 (233)
T ss_dssp EEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeccC---ChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEE
Confidence 9976432 33567899999999999999999742100 00 00111333444556678887654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-10 Score=119.07 Aligned_cols=97 Identities=14% Similarity=0.040 Sum_probs=80.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||||||+|.++..++++. ....++++|+ +.+++.|+++ .++.+...|... |++++ |+|++..++++|.+.
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~~--D~v~~~~vlh~~~~~ 277 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF-SGVEHLGGDMFD-GVPKG--DAIFIKWICHDWSDE 277 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SEEEEESCGGGBCHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc-CCCEEEecCCCC-CCCCC--CEEEEechhhcCCHH
Confidence 4599999999999999999874 3346788899 8888777654 468888888776 77754 999999999999732
Q ss_pred -HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 281 -NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 281 -~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+|+++.++|||||++++.+.
T Consensus 278 ~~~~~l~~~~~~L~pgG~l~i~e~ 301 (368)
T 3reo_A 278 HCLKLLKNCYAALPDHGKVIVAEY 301 (368)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEe
Confidence 34889999999999999999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=117.03 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=98.0
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd 262 (595)
.+.+.++... ..+|||||||+|.++..++++.. ...++++|+ +.+++.|+++ ++ ++.+...|... +++.
T Consensus 174 ~l~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 248 (360)
T 1tw3_A 174 APAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR 248 (360)
T ss_dssp HHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS
T ss_pred HHHHhCCCcc--CcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC
Confidence 3444554433 34999999999999999998743 347778898 8889888765 33 57888888754 4444
Q ss_pred CceeEEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEEcCC-CCCCCC------------------chhHHHHHHHHH
Q 007645 263 FSFDIVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPP-VQWPKQ------------------DKEWADLQAVAR 322 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls~p~-~~~~~~------------------~~~w~~l~~la~ 322 (595)
.||+|++..++++|.+.. ..+++++.++|||||++++.++. ...... ...-+++.++++
T Consensus 249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 327 (360)
T 1tw3_A 249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAA 327 (360)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHH
Confidence 499999999998886322 48999999999999999998753 111000 011234667888
Q ss_pred HcCcEEEEe
Q 007645 323 ALCYELIAV 331 (595)
Q Consensus 323 ~~~w~~v~~ 331 (595)
+.+|+.+..
T Consensus 328 ~aGf~~~~~ 336 (360)
T 1tw3_A 328 SAGLVVEEV 336 (360)
T ss_dssp HTTEEEEEE
T ss_pred HCCCeEEEE
Confidence 888887654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.7e-10 Score=111.37 Aligned_cols=127 Identities=14% Similarity=0.164 Sum_probs=94.8
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRLP 259 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~LP 259 (595)
+..+.+.+....+. +|||+|||+|.++..+++. +. ...+.++|+++.+++.|+++ +.. +.+...|....
T Consensus 82 ~~~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 157 (255)
T 3mb5_A 82 AALIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGP-EGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG- 157 (255)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-
T ss_pred HHHHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCC-CeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-
Confidence 34555566555544 8999999999999999987 32 34788999999999999876 443 78888887643
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC--cEEE
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC--YELI 329 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~--w~~v 329 (595)
+++++||+|++.. .++..++.++.++|||||++++..+. ......+.+.+++.+ |..+
T Consensus 158 ~~~~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~------~~~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 158 IEEENVDHVILDL------PQPERVVEHAAKALKPGGFFVAYTPC------SNQVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp CCCCSEEEEEECS------SCGGGGHHHHHHHEEEEEEEEEEESS------HHHHHHHHHHHHHTGGGBSCC
T ss_pred cCCCCcCEEEECC------CCHHHHHHHHHHHcCCCCEEEEEECC------HHHHHHHHHHHHHcCCCcccc
Confidence 7788999999842 25567899999999999999998752 122344566666666 6544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-10 Score=114.99 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=86.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----C---CCeEEEEcccccC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----G---IPAFVAMLGTRRL 258 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----g---~~~~~~~~d~~~L 258 (595)
+..+.+.+....+. +|||+|||+|.++..|++.-.....+.++|+++.+++.|+++ + .++.+...|+..+
T Consensus 88 ~~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 88 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 34555566555544 899999999999999998511124788999999999998876 3 3578888898888
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++++||+|++.. . ++..++.++.++|+|||++++..+
T Consensus 166 ~~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVLDM-----L-APWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEeC
Confidence 88888999999832 2 455789999999999999999886
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.7e-10 Score=117.80 Aligned_cols=112 Identities=19% Similarity=0.171 Sum_probs=86.6
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~ 257 (595)
..|.+.+.+.+....+. +|||+|||+|.++..+++++. ..+.++|++ .+++.|+++ +. .+.+...++..
T Consensus 24 ~~y~~ai~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~ 98 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGA--KHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCC--SEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhhHhhcCCC--EEEEecCccHHHHHHHHHCCC--CEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhh
Confidence 44556665555544444 899999999999999998853 378889999 588877764 43 47888999999
Q ss_pred CCCCCCceeEEEEcCCCccc--ccCHHHHHHHHHhhcCCCcEEEE
Q 007645 258 LPFPAFSFDIVHCSRCLIPF--TAYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~--~~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
+++++++||+|+|..+..++ ......++.++.|+|||||.++.
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 98888899999998543332 23567899999999999999974
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.4e-10 Score=115.97 Aligned_cols=135 Identities=18% Similarity=0.081 Sum_probs=94.2
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH--c--CCCeEEEEcccccCCCCCCc
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE--R--GIPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e--r--g~~~~~~~~d~~~LPfpd~s 264 (595)
.+.+.++... ..+|||||||+|.++..++++.. ...++++|+++ ++..++. . ...+.+...|.. .++| +
T Consensus 175 ~~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~-~~~~~~~~~~~~~~~v~~~~~d~~-~~~p--~ 247 (348)
T 3lst_A 175 ILARAGDFPA--TGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRAE-VVARHRLDAPDVAGRWKVVEGDFL-REVP--H 247 (348)
T ss_dssp HHHHHSCCCS--SEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECHH-HHTTCCCCCGGGTTSEEEEECCTT-TCCC--C
T ss_pred HHHHhCCccC--CceEEEECCccCHHHHHHHHHCC-CCEEEEecCHH-HhhcccccccCCCCCeEEEecCCC-CCCC--C
Confidence 4445554433 45999999999999999998743 45778889954 3331110 1 224788888875 4555 8
Q ss_pred eeEEEEcCCCcccccCH--HHHHHHHHhhcCCCcEEEEEcCCCCCC-CC-----------------chhHHHHHHHHHHc
Q 007645 265 FDIVHCSRCLIPFTAYN--ATYLIEVDRLLRPGGYLVISGPPVQWP-KQ-----------------DKEWADLQAVARAL 324 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~--~~~L~Ei~RvLRPGG~lvls~p~~~~~-~~-----------------~~~w~~l~~la~~~ 324 (595)
||+|++..+++||. +. ..+|+++.++|||||++++.+....-. .. ....+++++++++.
T Consensus 248 ~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 248 ADVHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAA 326 (348)
T ss_dssp CSEEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred CcEEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence 99999999999987 44 589999999999999999987521111 00 01134477888888
Q ss_pred CcEEEEe
Q 007645 325 CYELIAV 331 (595)
Q Consensus 325 ~w~~v~~ 331 (595)
+|+.+..
T Consensus 327 Gf~~~~~ 333 (348)
T 3lst_A 327 GLRLDRV 333 (348)
T ss_dssp TEEEEEE
T ss_pred CCceEEE
Confidence 9887754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.3e-10 Score=116.22 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=91.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccCCC--CCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRLPF--PAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~LPf--pd~sFDlV~ 269 (595)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++. .++.+...|...++. ++++||+|+
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 4589999999999999999872 2358899999999999998764 457888888766543 478999999
Q ss_pred EcCCCcccccCH----HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 270 CSRCLIPFTAYN----ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 270 ~s~vL~h~~~d~----~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
+.......+ .. ..++.++.|+|||||++++..... |.. ......+.+.+++.+|..+
T Consensus 175 ~d~~~~~~~-~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~-~~~-~~~~~~~~~~l~~~GF~~v 235 (304)
T 3bwc_A 175 IDTTDPAGP-ASKLFGEAFYKDVLRILKPDGICCNQGESI-WLD-LELIEKMSRFIRETGFASV 235 (304)
T ss_dssp EECC----------CCHHHHHHHHHHEEEEEEEEEEECCT-TTC-HHHHHHHHHHHHHHTCSEE
T ss_pred ECCCCcccc-chhhhHHHHHHHHHHhcCCCcEEEEecCCc-ccc-hHHHHHHHHHHHhCCCCcE
Confidence 976553322 11 578999999999999999986532 221 1224456667777777654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-10 Score=109.53 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=82.9
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C------CCeEEEEccccc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G------IPAFVAMLGTRR 257 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g------~~~~~~~~d~~~ 257 (595)
..+.+.+........+|||+|||+|.++..|++..-....++++|+++.+++.|+++ + .++.+...|...
T Consensus 65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM 144 (226)
T ss_dssp HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence 344455542222344999999999999999987621223788999999999998765 2 257888888776
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
.+.++++||+|++...+.++ +.++.++|||||+++++.++
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEESC
T ss_pred CcccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEec
Confidence 66567889999999887554 35789999999999998763
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=112.45 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=85.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHH----HHHHcCCCeEEEEccccc---CCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQ----FALERGIPAFVAMLGTRR---LPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~----~A~erg~~~~~~~~d~~~---LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|+++......+.++|+++.+++ .|+++ .++.+...|+.. +++.+++||+|++...
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~ 156 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVDVIFADVA 156 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEEEEEECCC
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEEEEEEcCC
Confidence 348999999999999999987211237889999977554 44443 567888888766 4566789999999654
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcCCC--CCCCCc-hhHHHHHHHHHHcCcEEEE
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGPPV--QWPKQD-KEWADLQAVARALCYELIA 330 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~--~~~~~~-~~w~~l~~la~~~~w~~v~ 330 (595)
..+....++.++.++|||||.++++..+. ...... ..+.+-.+++++.+|+.+.
T Consensus 157 ---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 157 ---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp ---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred ---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence 12223456888999999999999976431 111000 0011113556677887765
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=118.82 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=90.1
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...|.+.+.+.+....+. +|||||||+|.++..+++++. ..+.++|.++ +++.|+++ +. .+.+...+..
T Consensus 35 ~~~y~~~i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~ 109 (348)
T 2y1w_A 35 TGTYQRAILQNHTDFKDK--IVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVE 109 (348)
T ss_dssp HHHHHHHHHHTGGGTTTC--EEEEETCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhccccCCcC--EEEEcCCCccHHHHHHHhCCC--CEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchh
Confidence 345667777777655544 999999999999999998753 3788899996 77777654 43 5788899988
Q ss_pred cCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.++++ ++||+|++..+++|+. +.....+.++.++|||||.+++..
T Consensus 110 ~~~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 110 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp TCCCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred hCCCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 88766 6899999998887776 345678889999999999998653
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-11 Score=122.35 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=80.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++..+++.+ ..++++|+++.+++.|+++ ++ ++.+.++|+..++ ++++||+|+++..++
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 489999999999999999986 4788999999999998865 44 6889999987776 568999999999886
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+.. +....+.++.++|+|||.+++.
T Consensus 156 ~~~-~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 156 GPD-YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SGG-GGGSSSBCTTTSCSSCHHHHHH
T ss_pred Ccc-hhhhHHHHHHhhcCCcceeHHH
Confidence 654 4455778899999999997764
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.5e-10 Score=108.46 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=85.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
.+|||+|||+|.++..++... ....++++|+++.+++.|+++ +. ++.+...+...++ ++++||+|++.. +
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~-- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F-- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S--
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c--
Confidence 389999999999999998762 234789999999999998875 44 3788888887766 567899999754 2
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
.+...++.++.++|+|||++++..... .-+.+.++.+ +|+.+.
T Consensus 142 --~~~~~~l~~~~~~L~~gG~l~~~~~~~-------~~~~~~~~~~--g~~~~~ 184 (207)
T 1jsx_A 142 --ASLNDMVSWCHHLPGEQGRFYALKGQM-------PEDEIALLPE--EYQVES 184 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEESSC-------CHHHHHTSCT--TEEEEE
T ss_pred --CCHHHHHHHHHHhcCCCcEEEEEeCCC-------chHHHHHHhc--CCceee
Confidence 356789999999999999999975311 1123444443 777664
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=121.47 Aligned_cols=108 Identities=14% Similarity=0.036 Sum_probs=84.6
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDl 267 (595)
..+.+.++. .....+|||||||+|.++..++++.. ...++++|+ +.+++.|++. .++.+...|... ++++ ||+
T Consensus 198 ~~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~~--~D~ 270 (372)
T 1fp1_D 198 KRMLEIYTG-FEGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPL-SGIEHVGGDMFA-SVPQ--GDA 270 (372)
T ss_dssp HHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCC--EEE
T ss_pred HHHHHHhhc-cCCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhc-CCCEEEeCCccc-CCCC--CCE
Confidence 344444431 12345999999999999999998853 346778899 8888877653 358888888776 6664 999
Q ss_pred EEEcCCCcccccCHH--HHHHHHHhhcCCCcEEEEEcC
Q 007645 268 VHCSRCLIPFTAYNA--TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 268 V~~s~vL~h~~~d~~--~~L~Ei~RvLRPGG~lvls~p 303 (595)
|++..+++||. +.. .+|+++.++|||||++++.+.
T Consensus 271 v~~~~~lh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e~ 307 (372)
T 1fp1_D 271 MILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVEF 307 (372)
T ss_dssp EEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEecccccCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999998887 455 899999999999999999853
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=110.82 Aligned_cols=129 Identities=12% Similarity=0.141 Sum_probs=95.8
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfp 261 (595)
..+.+.+....+. +|||+|||+|.++..++++-.....+.++|+++.+++.|+++ ++ ++.+...|.... ++
T Consensus 102 ~~i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 102 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-cc
Confidence 3445555555544 899999999999999998721234788999999999999876 43 577777787665 66
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+++||+|++.. .++..++.++.++|+|||.+++..+. .....++.+.+++.+|..+..
T Consensus 179 ~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~------~~~~~~~~~~l~~~gf~~~~~ 236 (277)
T 1o54_A 179 EKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCPT------TNQVQETLKKLQELPFIRIEV 236 (277)
T ss_dssp CCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEESS------HHHHHHHHHHHHHSSEEEEEE
T ss_pred CCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC------HHHHHHHHHHHHHCCCceeEE
Confidence 78999999842 25567899999999999999998752 122345556666788876644
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-10 Score=110.97 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=86.4
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAML 253 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~ 253 (595)
.....++..+....+...+ .+|||||||+|..+..|++.-.....++++|+++.+++.|+++ +.. +.+..+
T Consensus 39 ~~~~~~l~~l~~~~~~~~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g 116 (221)
T 3dr5_A 39 EMTGQLLTTLAATTNGNGS--TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS 116 (221)
T ss_dssp HHHHHHHHHHHHHSCCTTC--CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred HHHHHHHHHHHHhhCCCCC--CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc
Confidence 3455566666665543322 3899999999999999988622235789999999999999865 443 778887
Q ss_pred ccccC-C-CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 254 GTRRL-P-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 254 d~~~L-P-fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+... + +++++||+|++.... .+...++.++.++|||||++++...
T Consensus 117 da~~~l~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 117 RPLDVMSRLANDSYQLVFGQVSP----MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp CHHHHGGGSCTTCEEEEEECCCT----TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred CHHHHHHHhcCCCcCeEEEcCcH----HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 75443 2 346899999987543 3456789999999999999998543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-09 Score=109.96 Aligned_cols=145 Identities=12% Similarity=0.001 Sum_probs=96.3
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecC-cHHHHHHHHHcC--------------
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDS-HKAQIQFALERG-------------- 245 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~-s~~~l~~A~erg-------------- 245 (595)
.......+.+.+......+ .+|||+|||+|.++..++..+. ..++++|+ ++.+++.|+++.
T Consensus 62 ~~~~~l~~~l~~~~~~~~~--~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~ 137 (281)
T 3bzb_A 62 SGARALADTLCWQPELIAG--KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVK 137 (281)
T ss_dssp CHHHHHHHHHHHCGGGTTT--CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC---------
T ss_pred cHHHHHHHHHHhcchhcCC--CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCC
Confidence 3445555666655443443 4899999999999999988753 37889999 899999887653
Q ss_pred -CCeEEEEcccccC--CC----CCCceeEEEEcCCCcccccCHHHHHHHHHhhcC---C--CcEEEEEcCCCCCCCCchh
Q 007645 246 -IPAFVAMLGTRRL--PF----PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLR---P--GGYLVISGPPVQWPKQDKE 313 (595)
Q Consensus 246 -~~~~~~~~d~~~L--Pf----pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLR---P--GG~lvls~p~~~~~~~~~~ 313 (595)
.++.+...+.... .+ ++++||+|+++.+++|.. +...++.++.++|+ | ||.++++..+..-...+ .
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~-~ 215 (281)
T 3bzb_A 138 RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-AHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAE-R 215 (281)
T ss_dssp -CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-GHHHHHHHHHHHBCCTTTCTTCEEEEEECC---------
T ss_pred CCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-HHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccch-h
Confidence 1344444332221 11 357899999999997654 77899999999999 9 99887764322110000 0
Q ss_pred HHHHHHHHHHcC-cEEEEe
Q 007645 314 WADLQAVARALC-YELIAV 331 (595)
Q Consensus 314 w~~l~~la~~~~-w~~v~~ 331 (595)
-..+.+.+++.+ |+....
T Consensus 216 ~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 216 DLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp CTHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEe
Confidence 123445667778 877644
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-10 Score=109.77 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=78.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCC----ceEEEEeecCcHHHHHHHHHc----C------CCeEEEEcccccCC----CCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENI----LTLSFAPRDSHKAQIQFALER----G------IPAFVAMLGTRRLP----FPA 262 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv----~~~~v~~vD~s~~~l~~A~er----g------~~~~~~~~d~~~LP----fpd 262 (595)
..+|||||||+|.++..|++... ....++++|+++.+++.|+++ + .++.+...|..... ..+
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCccC
Confidence 34899999999999999988742 234788999999999999876 3 35788888877655 556
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|++..+++++ +.++.++|||||++++..+
T Consensus 161 ~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 161 GLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEE
T ss_pred CCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEc
Confidence 789999999888654 4788999999999999875
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.1e-10 Score=119.11 Aligned_cols=109 Identities=19% Similarity=0.048 Sum_probs=84.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDl 267 (595)
..+.+.++. .....+|||||||+|.++..++++. ....++.+|+ +.+++.|+++ .++.+...|... |++++ |+
T Consensus 190 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~p~~--D~ 262 (364)
T 3p9c_A 190 KKLLELYHG-FEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQF-PGVTHVGGDMFK-EVPSG--DT 262 (364)
T ss_dssp HHHHHHCCT-TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC-TTEEEEECCTTT-CCCCC--SE
T ss_pred HHHHHhccc-ccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhhc-CCeEEEeCCcCC-CCCCC--CE
Confidence 334444441 1234599999999999999999873 2346788899 7888777654 468899999877 77754 99
Q ss_pred EEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 268 VHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 268 V~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|++..++++|.+ +...+|+++.++|||||++++.+.
T Consensus 263 v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~ 299 (364)
T 3p9c_A 263 ILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQC 299 (364)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred EEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999999999973 335889999999999999999875
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-09 Score=113.24 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=93.3
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeE
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDl 267 (595)
.+....+. +|||+|||+|..+..|++.......++++|+++.+++.++++ ++ ++.+...|+..++..+++||+
T Consensus 113 ~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 113 ALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 34444444 899999999999999998632334788999999999988776 55 578888888777655678999
Q ss_pred EEEcC------CCccccc---------------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 268 VHCSR------CLIPFTA---------------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 268 V~~s~------vL~h~~~---------------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
|++.. ++.+-++ ....+|.++.++|||||++++++....-.+ .-..++.++++.++
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~E---ne~~v~~~l~~~~~ 267 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEE---NEFVIQWALDNFDV 267 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGG---THHHHHHHHHHSSE
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHH---hHHHHHHHHhcCCC
Confidence 99842 2221110 014789999999999999999875332221 22346677777777
Q ss_pred EEE
Q 007645 327 ELI 329 (595)
Q Consensus 327 ~~v 329 (595)
+.+
T Consensus 268 ~~~ 270 (315)
T 1ixk_A 268 ELL 270 (315)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-10 Score=117.71 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=80.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||||||+|.++..++++. ....++++|+ +.+++.|++. .++.+...|... ++++ ||+|++..+++||. +
T Consensus 189 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~p~--~D~v~~~~~lh~~~-d 261 (352)
T 1fp2_A 189 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSGS-NNLTYVGGDMFT-SIPN--ADAVLLKYILHNWT-D 261 (352)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCB-TTEEEEECCTTT-CCCC--CSEEEEESCGGGSC-H
T ss_pred CceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhcccC-CCcEEEeccccC-CCCC--ccEEEeehhhccCC-H
Confidence 4589999999999999999873 2347889999 9998888764 347888888755 6653 99999999999997 4
Q ss_pred HH--HHHHHHHhhcCC---CcEEEEEcC
Q 007645 281 NA--TYLIEVDRLLRP---GGYLVISGP 303 (595)
Q Consensus 281 ~~--~~L~Ei~RvLRP---GG~lvls~p 303 (595)
.. .+|+++.++||| ||++++.++
T Consensus 262 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 262 KDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 55 899999999999 999999875
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-10 Score=109.86 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=76.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CCCC-----CCceeEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFP-----AFSFDIVH 269 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LPfp-----d~sFDlV~ 269 (595)
.+|||||||+|.++..|++.-.....++++|+++.+++.|+++ +. .+.+..+|+.. ++.. .++||+|+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~ 139 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVF 139 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEE
Confidence 4899999999999999998522245889999999999999875 44 37888888633 3322 27899999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+....+++. +...++.++ ++|||||++++...
T Consensus 140 ~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 140 LDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp ECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EcCCcccch-HHHHHHHhc-cccCCCeEEEEeCC
Confidence 988775554 344567777 99999999998654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.3e-10 Score=111.26 Aligned_cols=117 Identities=12% Similarity=-0.005 Sum_probs=83.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcC-CceEEEEeecCcHHHHHHHHHc---C----C--C-------
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSEN-ILTLSFAPRDSHKAQIQFALER---G----I--P------- 247 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~g-v~~~~v~~vD~s~~~l~~A~er---g----~--~------- 247 (595)
..++.+.+.+... ...+|||+|||+|.++..++... .....++++|+++.+++.|+++ . + .
T Consensus 38 ~l~~~~l~~~~~~--~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGD--GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCC--SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC--CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 4555555544322 23589999999999999998761 2356899999999999999854 1 1 1
Q ss_pred ------------------eE-------------EEEcccccCCC-----CCCceeEEEEcCCCccccc--------CHHH
Q 007645 248 ------------------AF-------------VAMLGTRRLPF-----PAFSFDIVHCSRCLIPFTA--------YNAT 283 (595)
Q Consensus 248 ------------------~~-------------~~~~d~~~LPf-----pd~sFDlV~~s~vL~h~~~--------d~~~ 283 (595)
+. +.+.|...... ..++||+|+|+..+.+... ....
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 34 77777655321 3458999999876654331 2348
Q ss_pred HHHHHHhhcCCCcEEEEEcC
Q 007645 284 YLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 284 ~L~Ei~RvLRPGG~lvls~p 303 (595)
++.++.++|+|||+++++..
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHhcCCCcEEEEeCc
Confidence 89999999999999999654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.2e-10 Score=110.25 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=83.3
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
.....+.+.+....+. +|||+|||+|.++..+++... ..++++|+++.+++.|+++ +. ++.+...|. ..+
T Consensus 78 ~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~ 152 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKG 152 (235)
T ss_dssp HHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGC
T ss_pred HHHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccC
Confidence 3445555655554444 899999999999999998742 4788899999999999875 33 467777776 445
Q ss_pred CCCC-ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 260 FPAF-SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 260 fpd~-sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
++++ .||+|++..+++++. .++.++|||||.+++..++
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECS
T ss_pred CCCCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEec
Confidence 5554 499999999887664 3789999999999999863
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.6e-10 Score=109.79 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=82.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEc-ccccC---CCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAML-GTRRL---PFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~-d~~~L---Pfpd~sFDlV~~s~vL~h 276 (595)
..+|||||||+|.++..|++++. ..++++|+|+.|++.|+++...+..... +...+ .++...||.+.+..++.+
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~--~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGA--KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCEEEEEccCCCHHHHHHHhcCC--CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 34899999999999999999854 2788999999999998887654432211 11111 112222455555555544
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcCCC---CCCC-------Cch-----hHHHHHHHHHHcCcEEEEe
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGPPV---QWPK-------QDK-----EWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p~~---~~~~-------~~~-----~w~~l~~la~~~~w~~v~~ 331 (595)
+ ..++.++.|+|||||++++...+. .+.. .+. ..+++.+++++.+|+....
T Consensus 116 l----~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~ 181 (232)
T 3opn_A 116 L----DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGL 181 (232)
T ss_dssp G----GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEE
T ss_pred H----HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEE
Confidence 3 568999999999999999874211 1100 011 1334778888999987755
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=106.04 Aligned_cols=96 Identities=11% Similarity=0.090 Sum_probs=72.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCc-eEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---------------------
Q 007645 202 RTALDMGCGVASFGGSMLSENIL-TLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------------------- 259 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~-~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------------------- 259 (595)
.+|||+|||+|.++..++++... ...++++|+++.+ ...++.+.+.|+..++
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 97 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYK 97 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------CCTTCEEEECCTTTTSSCCC-----------CHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------CCCCceEEEccccchhhhhhccccccccccchhhHHH
Confidence 48999999999999999987321 4578999998831 1234678888887766
Q ss_pred ----CCCCceeEEEEcCCCcccc---cCH-------HHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 ----FPAFSFDIVHCSRCLIPFT---AYN-------ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 ----fpd~sFDlV~~s~vL~h~~---~d~-------~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|+|..++++.. .+. ..++.++.++|||||.|++...
T Consensus 98 ~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 98 LKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5678999999987763321 111 1378999999999999999653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=114.83 Aligned_cols=128 Identities=10% Similarity=-0.039 Sum_probs=89.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccccCCC----CCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRLPF----PAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~LPf----pd~sFDlV~ 269 (595)
..+|||+|||+|.++..++..+. .++++|+|+.+++.|+++ ++. +.+.+.|+..+.. .+++||+|+
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 34899999999999999999864 788999999999999876 443 7888888755421 156899999
Q ss_pred EcCCC---------cccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 270 CSRCL---------IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 270 ~s~vL---------~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+.... .+..++...++.++.++|+|||+|++................+++.+++.++++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~~~ 301 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVASG 301 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEEEE
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 95431 122234568899999999999998876643222211111223444556677776533
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.02 E-value=7.7e-10 Score=109.18 Aligned_cols=97 Identities=11% Similarity=0.174 Sum_probs=78.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CC-CCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LP-FPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LP-fpd~sFDlV~~s~v 273 (595)
.+|||||||+|.++..|++.. ....++++|+++.+++.|+++ ++ ++.+...|+.. ++ ..+++||+|++...
T Consensus 73 ~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 73 KNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 389999999999999999853 245889999999999999875 43 57888888755 34 44689999998753
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. .+...++.++.++|||||++++...
T Consensus 152 ~----~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 152 K----AQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp S----SSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred H----HHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 3 3567899999999999999988543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=107.32 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=82.5
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd 262 (595)
.+.+.+....+. +|||+|||+|.++..++++ ...+.++|+++.+++.|+++ ++ ++.+...|.....+++
T Consensus 82 ~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 82 YIALKLNLNKEK--RVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHTTCCTTC--EEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHhcCCCCCC--EEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 445555554444 8999999999999999987 34788999999999999876 43 5777777776654366
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|++.. .++..++.++.++|||||.+++..+
T Consensus 157 ~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TCBSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CcccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 7899999742 2556789999999999999999886
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.01 E-value=7.7e-10 Score=119.87 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=84.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHH-------HHc----C---CCeE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFA-------LER----G---IPAF 249 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A-------~er----g---~~~~ 249 (595)
...+..+.+.+....+. +|||+|||+|.++..++... ....++++|+++.+++.| +++ | .++.
T Consensus 228 p~~v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~-g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~ 304 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALEC-GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 304 (433)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHH-CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceE
Confidence 45566666666655544 99999999999999999862 123688999999998887 544 4 3567
Q ss_pred EEEcccccC--CC--CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 250 VAMLGTRRL--PF--PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 250 ~~~~d~~~L--Pf--pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..++.... ++ ..++||+|+++.++ + .++...+|.++.++|||||.+++..+
T Consensus 305 ~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~-~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 305 FSLKKSFVDNNRVAELIPQCDVILVNNFL-F-DEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECCTT-C-CHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEEcCccccccccccccCCCCEEEEeCcc-c-cccHHHHHHHHHHhCCCCeEEEEeec
Confidence 777654322 22 24789999998766 2 24667889999999999999999764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=108.91 Aligned_cols=98 Identities=18% Similarity=0.120 Sum_probs=77.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CCCC--CCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFP--AFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LPfp--d~sFDlV~~s~ 272 (595)
.+|||||||+|..+..|++.-.....++++|+++.+++.|+++ +. ++.+..+|+.. ++.. .++||+|++..
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~ 144 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFIDA 144 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence 4899999999999999998732245889999999999999876 44 47888888654 3432 34899999865
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ..+...++.++.++|||||++++...
T Consensus 145 ~----~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 145 D----KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp C----GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred c----hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 3 23556799999999999999998764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=107.42 Aligned_cols=111 Identities=12% Similarity=0.121 Sum_probs=82.1
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc-----eEEEEeecCcHHHHHHHHHc----------CCCeE
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL-----TLSFAPRDSHKAQIQFALER----------GIPAF 249 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-----~~~v~~vD~s~~~l~~A~er----------g~~~~ 249 (595)
.....+.+.+........+|||+|||+|.++..|++.... ...++++|+++.+++.|+++ ..++.
T Consensus 69 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 148 (227)
T 1r18_A 69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 148 (227)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceE
Confidence 3344455555311222348999999999999999875110 13788999999999998865 23577
Q ss_pred EEEcccccCCCCC-CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 250 VAMLGTRRLPFPA-FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 250 ~~~~d~~~LPfpd-~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...|... ++++ ++||+|++..+++++. .++.++|||||++++...
T Consensus 149 ~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 149 IVEGDGRK-GYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEESCGGG-CCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred EEECCccc-CCCcCCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEe
Confidence 88888765 5554 7899999999886653 678999999999999875
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.2e-10 Score=112.79 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=77.9
Q ss_pred ceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC---CCCC-CceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL---PFPA-FSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L---Pfpd-~sFDlV~~s~vL 274 (595)
.+|||||||+|..+..|++. -.....++++|+++.+++.|+....++.+.++|...+ ++.+ .+||+|++...
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~- 161 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA- 161 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc-
Confidence 38999999999999999886 1223578999999999888875455788999988773 5443 47999998664
Q ss_pred cccccCHHHHHHHHHh-hcCCCcEEEEEc
Q 007645 275 IPFTAYNATYLIEVDR-LLRPGGYLVISG 302 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~R-vLRPGG~lvls~ 302 (595)
| .+...++.++.| +|||||++++.+
T Consensus 162 -~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 162 -H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp -C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred -h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 3 267789999998 999999999975
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=124.41 Aligned_cols=97 Identities=19% Similarity=0.050 Sum_probs=77.2
Q ss_pred cceEEEECCC------CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC------CCceeEE
Q 007645 201 LRTALDMGCG------VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP------AFSFDIV 268 (595)
Q Consensus 201 ~r~VLDIGCG------tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp------d~sFDlV 268 (595)
..+||||||| +|..+..+++.-.....++++|+++.|. ....++.+.++|+.++|+. +++||+|
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV 292 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV 292 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence 4589999999 7766777765422345889999999873 2445789999999998887 7899999
Q ss_pred EEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 269 HCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 269 ~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|..+ +++ .+...+|.++.|+|||||+|++.+.
T Consensus 293 isdgs-H~~-~d~~~aL~el~rvLKPGGvlVi~Dl 325 (419)
T 3sso_A 293 IDDGS-HIN-AHVRTSFAALFPHVRPGGLYVIEDM 325 (419)
T ss_dssp EECSC-CCH-HHHHHHHHHHGGGEEEEEEEEEECG
T ss_pred EECCc-ccc-hhHHHHHHHHHHhcCCCeEEEEEec
Confidence 99753 344 4778999999999999999999865
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-09 Score=114.13 Aligned_cols=136 Identities=18% Similarity=0.041 Sum_probs=98.5
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
..+...+........+ .+|||+|||+|.++..++........+.++|+++.+++.|+++ ++ .+.+.+.|+.++
T Consensus 189 ~~la~~l~~~~~~~~~--~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~ 266 (354)
T 3tma_A 189 PVLAQALLRLADARPG--MRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL 266 (354)
T ss_dssp HHHHHHHHHHTTCCTT--CCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGG
T ss_pred HHHHHHHHHHhCCCCC--CEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhC
Confidence 3344555566555444 3899999999999999988631224788999999999999876 44 588999999998
Q ss_pred CCCCCceeEEEEcCCCccccc-------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 259 PFPAFSFDIVHCSRCLIPFTA-------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~-------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+.+.+.||+|+|+..+..... ....++.++.++|||||.+++.++. ...++++.+ .+|+....
T Consensus 267 ~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~---------~~~~~~~~~-~g~~~~~~ 336 (354)
T 3tma_A 267 PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR---------PALLKRALP-PGFALRHA 336 (354)
T ss_dssp GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC---------HHHHHHHCC-TTEEEEEE
T ss_pred ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC---------HHHHHHHhh-cCcEEEEE
Confidence 887788999999765432211 1257899999999999999998761 112334444 77776543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=108.06 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=78.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------------CC-CeEEEEccccc-CC--CCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------------GI-PAFVAMLGTRR-LP--FPAFS 264 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------------g~-~~~~~~~d~~~-LP--fpd~s 264 (595)
..+|||||||+|.++..|++.+. ...++++|+++.+++.|+++ +. ++.+..+|+.. ++ +++++
T Consensus 50 ~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 50 KVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp CEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 34899999999999999998853 34789999999999988653 43 57888888765 66 77899
Q ss_pred eeEEEEcCCCcccccC--------HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAY--------NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d--------~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|.|+....- .|... ...++.++.++|+|||+|++.+.
T Consensus 129 ~d~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 129 LSKMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp EEEEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cCEEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 9999865321 22100 04799999999999999999763
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=106.22 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=73.8
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccC---CCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRL---PFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~L---Pfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++..|+++ +. ...+.++|+++.+++.++++ ..++.+...|+... ....++||+|++...
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~-~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~ 152 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGW-EGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVA 152 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCC-CeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECCC
Confidence 348999999999999999976 32 23788899999988877654 24678888887652 112368999998654
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.......++.++.++|||||++++..
T Consensus 153 ---~~~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 153 ---QPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp ---STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CHhHHHHHHHHHHHhcCCCCEEEEEE
Confidence 12122355999999999999999974
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-10 Score=127.27 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=81.1
Q ss_pred CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccC--CCCCCceeEEEEc
Q 007645 199 GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRL--PFPAFSFDIVHCS 271 (595)
Q Consensus 199 g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~L--Pfpd~sFDlV~~s 271 (595)
++..+|||||||.|.++..|+++|. +|+|+|.++.+++.|+.+ + .++.+.+.+++++ ++++++||+|+|.
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga---~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~ 141 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGA---TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL 141 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCC---EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence 4455899999999999999999975 789999999999988754 4 5688999988887 5678899999999
Q ss_pred CCCcccccCHH--HHHHHHHhhcCCCcEEEEEc
Q 007645 272 RCLIPFTAYNA--TYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 272 ~vL~h~~~d~~--~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+|+|+. ++. ..+..+.+.|+++|..++..
T Consensus 142 e~~ehv~-~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 142 SVFHHIV-HLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp SCHHHHH-HHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred cchhcCC-CHHHHHHHHHHHHHhccccceeeEE
Confidence 9999987 443 33556777788877666544
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-09 Score=106.81 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=78.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC-CCC--CCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-PFP--AFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L-Pfp--d~sFDlV~~s~ 272 (595)
.+|||+|||+|.++..|++... ...++++|+++.+++.|+++ +. .+.+...|.... +.. +++||+|++..
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 3899999999999999998732 35889999999999999876 44 477888776653 432 57899999976
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.. .+...++.++.++|||||++++...
T Consensus 135 ~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 135 AK----GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GG----SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CH----HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 54 3567899999999999999999753
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=106.40 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=99.2
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----CCeEEEEcccccCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----~~~~~~~~d~~~LPfpd 262 (595)
..+.+.+.... ..+|||||||+|.++..++++.. .+.++..|. +.+++.|+++. .++.+...|....|.+
T Consensus 169 ~~~~~~~~~~~--~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~- 243 (353)
T 4a6d_A 169 RSVLTAFDLSV--FPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP- 243 (353)
T ss_dssp HHHHHSSCGGG--CSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC-
T ss_pred HHHHHhcCccc--CCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC-
Confidence 34445454443 34899999999999999999843 345666776 77888888762 3578888887766655
Q ss_pred CceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCCC--CCc-----------------hhHHHHHHHHH
Q 007645 263 FSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWP--KQD-----------------KEWADLQAVAR 322 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~--~~~-----------------~~w~~l~~la~ 322 (595)
.+|++++.++|++|.++ ...+|+++.+.|+|||++++.+.-..-. ... ..-.+++++++
T Consensus 244 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~ 322 (353)
T 4a6d_A 244 -EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLS 322 (353)
T ss_dssp -CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred -CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHH
Confidence 47999999999999732 2478999999999999999987522111 110 01234678888
Q ss_pred HcCcEEEEe
Q 007645 323 ALCYELIAV 331 (595)
Q Consensus 323 ~~~w~~v~~ 331 (595)
+.||+.+..
T Consensus 323 ~AGf~~v~v 331 (353)
T 4a6d_A 323 SAGFRDFQF 331 (353)
T ss_dssp HHTCEEEEE
T ss_pred HCCCceEEE
Confidence 999987654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=97.35 Aligned_cols=110 Identities=12% Similarity=-0.026 Sum_probs=81.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCccccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA- 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~- 279 (595)
..+|||+|||+|.++..++..+. ..++++|+++.+++.|+++..++.+.+.|+..++ ++||+|+++..++++..
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC------
T ss_pred CCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC---CCeeEEEECCCchhccCc
Confidence 34899999999999999998742 3688999999999999998667889999988775 68999999999877652
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC 325 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~ 325 (595)
....++.++.++| |+.+++..+ ..+..+.++++..+
T Consensus 127 ~~~~~l~~~~~~~--g~~~~~~~~--------~~~~~~~~~~~~~g 162 (200)
T 1ne2_A 127 SDRAFIDKAFETS--MWIYSIGNA--------KARDFLRREFSARG 162 (200)
T ss_dssp -CHHHHHHHHHHE--EEEEEEEEG--------GGHHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc--CcEEEEEcC--------chHHHHHHHHHHCC
Confidence 2247899999998 554444322 22445667777666
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.5e-09 Score=105.52 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=88.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|.++..++++.. ...+.++|+++.+++.|+++ ++ ++.+..+|+..++. .++||+|++....
T Consensus 120 ~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~- 196 (272)
T 3a27_A 120 NEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH- 196 (272)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS-
T ss_pred CCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc-
Confidence 34899999999999999998732 34788999999999998865 43 57788888877744 6789999988654
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
+...++.++.++|+|||.++++.....-...+.....++.+.+..++++.
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 45668999999999999999987522111112223334555555555543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.9e-10 Score=112.95 Aligned_cols=119 Identities=11% Similarity=0.059 Sum_probs=83.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCC--cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-----CeEEEEcccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGV--ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-----PAFVAMLGTR 256 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGt--G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-----~~~~~~~d~~ 256 (595)
..|+....+.+.... ..++|||||||+ +..+..++++-.....++++|.|+.|++.|+++-. ++.++++|+.
T Consensus 63 r~fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~ 141 (277)
T 3giw_A 63 RDWMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADML 141 (277)
T ss_dssp HHHHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTT
T ss_pred HHHHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEeccc
Confidence 445555555554322 246899999997 33445554432234589999999999999988621 3788898887
Q ss_pred cCC----CC--CCcee-----EEEEcCCCcccccC--HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RLP----FP--AFSFD-----IVHCSRCLIPFTAY--NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LP----fp--d~sFD-----lV~~s~vL~h~~~d--~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++ .+ .++|| .|+++.+|+|+.+. +..++.++.+.|+|||+|+++..
T Consensus 142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~ 201 (277)
T 3giw_A 142 DPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIG 201 (277)
T ss_dssp CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEE
T ss_pred ChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEec
Confidence 642 11 34565 58889999666532 46899999999999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=113.08 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=78.6
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcC----------------CCeEE
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERG----------------IPAFV 250 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg----------------~~~~~ 250 (595)
..+.+.+....+. +|||+|||+|.++..|++. +. ...+.++|+++.+++.|+++. .++.+
T Consensus 95 ~~~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 95 NMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGS-QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCC-CceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 3444455555544 9999999999999999987 32 247889999999999998752 35788
Q ss_pred EEcccccC--CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 251 AMLGTRRL--PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 251 ~~~d~~~L--Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...|+..+ ++++++||+|++... ++..++.++.++|||||.+++..+
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp EESCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEES
T ss_pred EECChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 88888776 567788999998532 233479999999999999999875
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-09 Score=105.28 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=76.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC-CC-C----CCceeEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-PF-P----AFSFDIVH 269 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L-Pf-p----d~sFDlV~ 269 (595)
.+|||+|||+|.++..|++.-.....++++|+++.+++.|+++ +. .+.+.+.++... +. . .++||+|+
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~ 145 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIY 145 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEE
Confidence 3899999999999999998722245889999999999998876 44 378888876332 21 1 17899999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+... ..+...++.++.++|||||++++...
T Consensus 146 ~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 146 IDAD----KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp ECSC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ECCC----HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 7643 34567899999999999999999764
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-09 Score=103.37 Aligned_cols=97 Identities=12% Similarity=0.058 Sum_probs=76.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CCCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LPfpd~sFDlV~~s~vL 274 (595)
.+|||+|||+|..+..|++.......++++|+++.+++.|+++ +. .+.+..++... ++..++ ||+|++...
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~- 135 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD- 135 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT-
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC-
Confidence 3899999999999999988732245788999999999998865 33 37788887654 355456 999998743
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+...++.++.++|||||++++...
T Consensus 136 ---~~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 136 ---VFNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp ---TSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred ---hhhhHHHHHHHHHhcCCCeEEEEECc
Confidence 23667899999999999999998653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.6e-09 Score=117.34 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=86.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~ 257 (595)
..|.+.+.+.+....+ .+|||||||+|.++..+++.+. ..+.++|+++ +++.|+++ ++ ++.+...+...
T Consensus 144 ~~~~~~il~~l~~~~~--~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~ 218 (480)
T 3b3j_A 144 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE 218 (480)
T ss_dssp HHHHHHHHHTGGGTTT--CEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHhhhhcCC--CEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence 3445566666554443 4899999999999999988643 4788999998 88887764 44 48889999888
Q ss_pred CCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEE
Q 007645 258 LPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls 301 (595)
++++ ++||+|+|..+++|+. ++....+.++.++|||||++++.
T Consensus 219 ~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 219 VSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 7765 5899999988776765 23346777899999999999853
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=103.39 Aligned_cols=98 Identities=13% Similarity=0.029 Sum_probs=76.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC-C-CC---CCceeEEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-P-FP---AFSFDIVHC 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L-P-fp---d~sFDlV~~ 270 (595)
.+|||||||+|.++..|++.......++++|+++.+++.|+++ +. .+.+..+|+... + ++ .++||+|++
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~ 139 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI 139 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence 3899999999999999998732245889999999999998865 44 378888876432 2 11 267999998
Q ss_pred cCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.... .....++.++.++|||||++++...
T Consensus 140 d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 140 DADK----QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CSCG----GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred cCCc----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 7553 3456899999999999999998765
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-08 Score=104.76 Aligned_cols=129 Identities=11% Similarity=0.041 Sum_probs=94.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc-CCC-CCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR-LPF-PAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~-LPf-pd~sFDlV~~s~v 273 (595)
..+|||+| |+|.++..++..+. ...++++|+++.+++.|+++ ++ ++.+..+|+.. +|. .+++||+|+++..
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 34899999 99999999988753 23788999999999999876 55 68888889877 764 4578999999876
Q ss_pred CcccccCHHHHHHHHHhhcCCCcE-EEEEcCCCCCCCCchhHHHHHHHHH-HcCcEEEEeecce
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGY-LVISGPPVQWPKQDKEWADLQAVAR-ALCYELIAVDGNT 335 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~-lvls~p~~~~~~~~~~w~~l~~la~-~~~w~~v~~~~~~ 335 (595)
+... ....++.++.++|||||. ++++... .......|..+.+++. +.+++......+.
T Consensus 251 ~~~~--~~~~~l~~~~~~LkpgG~~~~~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~ 310 (373)
T 2qm3_A 251 ETLE--AIRAFVGRGIATLKGPRCAGYFGITR--RESSLDKWREIQKLLLNEFNVVITDIIRNF 310 (373)
T ss_dssp SSHH--HHHHHHHHHHHTBCSTTCEEEEEECT--TTCCHHHHHHHHHHHHHTSCCEEEEEEEEE
T ss_pred CchH--HHHHHHHHHHHHcccCCeEEEEEEec--CcCCHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 6433 257889999999999994 4555431 0111123566777777 7888765443333
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-10 Score=110.85 Aligned_cols=115 Identities=14% Similarity=0.217 Sum_probs=73.4
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccC-
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRL- 258 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~L- 258 (595)
++..+.+.+........+|||+|||+|.++..++.+. ....++++|+++.+++.|+++ ++. +.+...|+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred HHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 3444444443221134589999999999999888762 234789999999999999875 443 78888886552
Q ss_pred --CCC---CCceeEEEEcCCCccccc--------------CHHHHHHHHHhhcCCCcEEEEE
Q 007645 259 --PFP---AFSFDIVHCSRCLIPFTA--------------YNATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 259 --Pfp---d~sFDlV~~s~vL~h~~~--------------d~~~~L~Ei~RvLRPGG~lvls 301 (595)
+++ +++||+|+|+..+++... ....++.++.|+|||||.+.+.
T Consensus 130 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 130 MDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 455 368999999866543220 0123456777777777776553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-09 Score=109.97 Aligned_cols=100 Identities=15% Similarity=0.129 Sum_probs=78.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccC--CCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL--PFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~L--Pfpd~sFDlV~ 269 (595)
..+|||||||+|.++..|+++. ....++++|+++.+++.|+++. .++.+...|+... .+++++||+|+
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi 199 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 199 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence 4589999999999999999873 3458899999999999998752 3578888886543 23467999999
Q ss_pred EcCCCcccc--cC--HHHHHHHHHhhcCCCcEEEEEc
Q 007645 270 CSRCLIPFT--AY--NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 270 ~s~vL~h~~--~d--~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.... ++. .+ ...++.++.++|+|||.|++..
T Consensus 200 ~d~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 200 VDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp ECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 96542 221 11 3689999999999999999974
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-08 Score=108.13 Aligned_cols=132 Identities=11% Similarity=0.009 Sum_probs=95.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L 258 (595)
.....+.... ... ..+|||+|||+|.++..++..+. ...+.++|+++.+++.|+++ ++ .+.+.+.|+..+
T Consensus 205 ~la~~l~~~~-~~~--~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-ELD--GGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-TCC--SCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-cCC--CCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence 3444444444 333 34899999999999999998853 22688999999999999876 55 678999999999
Q ss_pred CCCCCceeEEEEcCCCccccc------C-HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 259 PFPAFSFDIVHCSRCLIPFTA------Y-NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~------d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++++++||+|+|+..+..... + ...++.++.|+| ||.+++.++ ....+++.+++.+|+....
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------CHHHHHHHHHHTTEEEEEE
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------CHHHHHHHHHHcCCEEEEE
Confidence 988899999999765432211 1 156788999999 555555543 1345677888899987654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.89 E-value=4.5e-09 Score=106.66 Aligned_cols=124 Identities=13% Similarity=0.043 Sum_probs=87.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC----CCCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF----PAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf----pd~sFDlV~~s~ 272 (595)
.+|||+|||+|.++..|++.......++++|+++.+++.++++ +. ++.+...|...++. .+++||+|++..
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 3899999999999999988522224788999999999988766 54 57888888776654 367899999862
Q ss_pred CCcc-----------------cccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH-cCcEE
Q 007645 273 CLIP-----------------FTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA-LCYEL 328 (595)
Q Consensus 273 vL~h-----------------~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~-~~w~~ 328 (595)
.... .......+|.++.++|||||++++++......+.+ ..++.++++ -.|++
T Consensus 165 Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene---~~v~~~l~~~~~~~~ 235 (274)
T 3ajd_A 165 PCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENE---EVIKYILQKRNDVEL 235 (274)
T ss_dssp CCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSH---HHHHHHHHHCSSEEE
T ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhH---HHHHHHHHhCCCcEE
Confidence 2111 11345688999999999999999998644333322 234555543 23444
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.9e-08 Score=92.95 Aligned_cols=118 Identities=10% Similarity=0.020 Sum_probs=88.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ +.++.+...|+..++ ++||+|+++..++.
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPPFGS 124 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCCCSS
T ss_pred cCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCCCcc
Confidence 34899999999999999998854 2688999999999999886 346888888888764 48999999988755
Q ss_pred cc-cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 277 FT-AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 277 ~~-~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.. .....++.++.++| ||.+++..+ .......+.+.+++.+|+....
T Consensus 125 ~~~~~~~~~l~~~~~~l--~~~~~~~~~------~~~~~~~~~~~l~~~g~~~~~~ 172 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS--DVVYSIHLA------KPEVRRFIEKFSWEHGFVVTHR 172 (207)
T ss_dssp SSTTTTHHHHHHHHHHC--SEEEEEEEC------CHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccCCchHHHHHHHHHhc--CcEEEEEeC------CcCCHHHHHHHHHHCCCeEEEE
Confidence 54 23357889999998 665554421 1222445667778888876543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=7.7e-10 Score=113.10 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=69.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-------CeEEE--EcccccCCCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-------PAFVA--MLGTRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-------~~~~~--~~d~~~LPfpd~sFDlV~~s 271 (595)
..+|||+|||+|.++..++++ ..++++|+++ ++..++++.. ++.+. ++|+..+| +++||+|+|.
T Consensus 83 g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd 155 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCD 155 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEEC
T ss_pred CCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEEC
Confidence 448999999999999999987 2567778887 4333333221 46777 77888776 6899999998
Q ss_pred CCCcccc---cCHH---HHHHHHHhhcCCCc--EEEEEcC
Q 007645 272 RCLIPFT---AYNA---TYLIEVDRLLRPGG--YLVISGP 303 (595)
Q Consensus 272 ~vL~h~~---~d~~---~~L~Ei~RvLRPGG--~lvls~p 303 (595)
.+ .+.. .+.. .+|.++.|+||||| .|++...
T Consensus 156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 76 2221 0111 37899999999999 9998653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-09 Score=110.18 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=78.0
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC-----CCeEEEEcccccC--CCCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG-----IPAFVAMLGTRRL--PFPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg-----~~~~~~~~d~~~L--Pfpd~sFDlV~~s~vL 274 (595)
.+|||||||+|.++.+++++. ....++.+|+++.+++.|+++. .++.+.+.|...+ .+++++||+|++....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~-p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVY-PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHS-TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CEEEEEECCcCHHHHHHHHHC-CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 389999999999999999852 2237889999999999999873 3578888886554 3557899999986433
Q ss_pred cccc-c--CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFT-A--YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~-~--d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.... . ....++.++.++|||||+|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2111 1 126899999999999999998764
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-09 Score=103.67 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=76.1
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccccc-CC--------------C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR-LP--------------F 260 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~-LP--------------f 260 (595)
.+|||||||+|.++..|++.......++++|+++.+++.|+++ +.. +.+...|... ++ |
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f 141 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDF 141 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTT
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccc
Confidence 3899999999999999998732245888999999999999876 442 6777776533 12 3
Q ss_pred CC--CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 261 PA--FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 261 pd--~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++ ++||+|++.... .+...++.++.++|||||++++..
T Consensus 142 ~~~~~~fD~I~~~~~~----~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 142 AFGPSSIDLFFLDADK----ENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CCSTTCEEEEEECSCG----GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCcCEEEEeCCH----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 33 789999988654 345678999999999999999975
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.7e-08 Score=100.58 Aligned_cols=131 Identities=20% Similarity=0.085 Sum_probs=100.0
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLP 259 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LP 259 (595)
-++.+.++++. ..+|||||||+|.++..|+..+. ...+.++|+++.+++.|+++ ++ .+.+..+|.....
T Consensus 11 RL~~i~~~v~~----g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~ 85 (230)
T 3lec_A 11 RLQKVANYVPK----GARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF 85 (230)
T ss_dssp HHHHHHTTSCT----TEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCCC----CCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence 34555555542 24899999999999999999853 45788999999999999876 44 3788888876665
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
.++..||+|+.....-. -...+|.+..+.|+++|+|+++.. .....+.+.+.+.+|.++...
T Consensus 86 ~~~~~~D~IviaGmGg~---lI~~IL~~~~~~l~~~~~lIlqp~--------~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 86 EEADNIDTITICGMGGR---LIADILNNDIDKLQHVKTLVLQPN--------NREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp CGGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEES--------SCHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccCEEEEeCCchH---HHHHHHHHHHHHhCcCCEEEEECC--------CChHHHHHHHHHCCCEEEEEE
Confidence 55457999987654422 245788889999999999999863 125578888999999988763
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=111.14 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=68.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-------CeEEE--EcccccCCCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-------PAFVA--MLGTRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-------~~~~~--~~d~~~LPfpd~sFDlV~~s 271 (595)
..+|||+|||+|.++..++++ ..++++|+++ ++..++++.. ++.+. +.|+..++ +++||+|+|.
T Consensus 75 g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd 147 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCD 147 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEEC
T ss_pred CCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEe
Confidence 348999999999999999987 2567778877 4322222221 46777 77887766 6899999998
Q ss_pred CCCcccc---cCHH---HHHHHHHhhcCCCc--EEEEEcC
Q 007645 272 RCLIPFT---AYNA---TYLIEVDRLLRPGG--YLVISGP 303 (595)
Q Consensus 272 ~vL~h~~---~d~~---~~L~Ei~RvLRPGG--~lvls~p 303 (595)
.+ ++.. .+.. .+|.++.|+||||| .|++...
T Consensus 148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 66 2221 0111 37899999999999 9999763
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=112.38 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=78.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||||||+|.++..++++.. ...++++|+ +.+++.|++. .++.+...|... +++ +||+|++..+|++|. +
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh~~~-d 266 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTGN-ENLNFVGGDMFK-SIP--SADAVLLKWVLHDWN-D 266 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCCC-SSEEEEECCTTT-CCC--CCSEEEEESCGGGSC-H
T ss_pred CCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhcccC-CCcEEEeCccCC-CCC--CceEEEEcccccCCC-H
Confidence 34899999999999999998843 346778899 6888776653 347888888766 666 499999999998887 5
Q ss_pred HH--HHHHHHHhhcCC---CcEEEEEcC
Q 007645 281 NA--TYLIEVDRLLRP---GGYLVISGP 303 (595)
Q Consensus 281 ~~--~~L~Ei~RvLRP---GG~lvls~p 303 (595)
.. .+|+++.++||| ||++++.+.
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 294 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDI 294 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 45 999999999999 999999875
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-08 Score=100.87 Aligned_cols=129 Identities=13% Similarity=0.002 Sum_probs=97.9
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
++.+.++++. ..+|||||||+|.++..|+..+. ...+.++|+++.+++.|+++ ++ .+.+..+|......
T Consensus 12 L~~i~~~v~~----g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~ 86 (244)
T 3gnl_A 12 LEKVASYITK----NERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIE 86 (244)
T ss_dssp HHHHHTTCCS----SEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCCC----CCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccC
Confidence 4555565543 24899999999999999999853 45788999999999999876 55 36888888766554
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++..||+|+...+.-. -...+|.+..+.|+++|+|+++.. .....+.+.+.+.+|.++..
T Consensus 87 ~~~~~D~IviagmGg~---lI~~IL~~~~~~L~~~~~lIlq~~--------~~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGGT---LIRTILEEGAAKLAGVTKLILQPN--------IAAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp GGGCCCEEEEEEECHH---HHHHHHHHTGGGGTTCCEEEEEES--------SCHHHHHHHHHHHTEEEEEE
T ss_pred ccccccEEEEeCCchH---HHHHHHHHHHHHhCCCCEEEEEcC--------CChHHHHHHHHHCCCEEEEE
Confidence 4446999987654422 245788899999999999999863 13557888888999998765
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.8e-09 Score=108.23 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=79.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----------CCeEEEEccccc-CCCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----------IPAFVAMLGTRR-LPFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----------~~~~~~~~d~~~-LPfpd~sFDlV~ 269 (595)
..+|||||||+|.++..++++. ....++++|+++.+++.|+++. .++.+...|+.. ++..+++||+|+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 4589999999999999999873 2458899999999999998752 357888888655 344568899999
Q ss_pred EcCCCccc---c--cC--HHHHHHHHHhhcCCCcEEEEEc
Q 007645 270 CSRCLIPF---T--AY--NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 270 ~s~vL~h~---~--~d--~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.... ++ . .. ...++.++.++|||||.+++..
T Consensus 157 ~d~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 157 IDLTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EECCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred ECCCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 97654 44 1 11 3688999999999999999975
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.85 E-value=7.4e-09 Score=105.46 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=78.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccccc-CCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~-LPfpd~sFDlV~~ 270 (595)
..+|||||||+|.++..++++. ....++.+|+++.+++.|+++. .++.+...|+.. ++..+++||+|++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 4589999999999999999872 2347889999999999998753 357888888654 3444688999999
Q ss_pred cCCCcccccC----HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTAY----NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~d----~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.... ++... ...++.++.++|+|||.+++...
T Consensus 155 d~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 155 DSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp SCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 6543 32211 25789999999999999999864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.9e-09 Score=99.39 Aligned_cols=97 Identities=13% Similarity=-0.004 Sum_probs=68.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCce--------EEEEeecCcHHHHHHHHHcCCCeEEE-EcccccCC--------CCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILT--------LSFAPRDSHKAQIQFALERGIPAFVA-MLGTRRLP--------FPAF 263 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~--------~~v~~vD~s~~~l~~A~erg~~~~~~-~~d~~~LP--------fpd~ 263 (595)
..+|||+|||+|.++..|+++.... ..++++|+++.+ ....+.+. ..|....+ ++++
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTSHHHHHHHHHHSGGG
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCCHHHHHHHHHhcCCC
Confidence 3489999999999999999872111 478899998732 11245666 66654432 3456
Q ss_pred ceeEEEEcCCCc---ccccCH-------HHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLI---PFTAYN-------ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~---h~~~d~-------~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+||+|+|..+++ ++..+. ..++.++.++|||||.|++...
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 899999976542 221122 3789999999999999999864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-09 Score=105.98 Aligned_cols=101 Identities=12% Similarity=0.116 Sum_probs=78.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccC-CCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRL-PFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~L-Pfpd~sFDlV~~ 270 (595)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++. .++.+...|+... +..+++||+|++
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 157 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence 4599999999999999999873 2458899999999999999863 3567888886542 333678999999
Q ss_pred cCCCccccc--CH--HHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTA--YN--ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~--d~--~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.... ++.. .. ..++.++.++|||||.+++...
T Consensus 158 d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 158 DSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp ECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 5433 3221 11 5899999999999999999864
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-08 Score=103.35 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=84.4
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~ 256 (595)
...+++.+.+.+....+ .+|||+|||+|.++..++.. ....++++|+|+.+++.|+++ ++. +.+.+.|..
T Consensus 108 te~lv~~~l~~~~~~~~--~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 108 TEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp HHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred HHHHHHHHHHHhcccCC--CEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence 45566666666543333 38999999999999999987 345889999999999999876 443 788888876
Q ss_pred cCCCCCCce---eEEEEcCCCc-----------ccc-------cCHHHHHHHHH-hhcCCCcEEEEEcC
Q 007645 257 RLPFPAFSF---DIVHCSRCLI-----------PFT-------AYNATYLIEVD-RLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LPfpd~sF---DlV~~s~vL~-----------h~~-------~d~~~~L~Ei~-RvLRPGG~lvls~p 303 (595)
. +++ ++| |+|+|+-... |.+ .+...++.++. +.|+|||.+++..+
T Consensus 184 ~-~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~ 250 (284)
T 1nv8_A 184 E-PFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 250 (284)
T ss_dssp G-GGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred h-hcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 5 222 578 9999973221 211 11126899999 99999999999754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-08 Score=107.92 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=91.4
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCce
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSF 265 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sF 265 (595)
.+....+. +|||+|||+|..+..|++.......++++|+++.+++.++++ |. ++.+...|...++ +++++|
T Consensus 254 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~f 331 (450)
T 2yxl_A 254 VLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVA 331 (450)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCE
T ss_pred hcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCC
Confidence 34444444 899999999999999988632224788999999999988766 55 5788888887776 566889
Q ss_pred eEEEEc------CCCcccc--------cC-------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc
Q 007645 266 DIVHCS------RCLIPFT--------AY-------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324 (595)
Q Consensus 266 DlV~~s------~vL~h~~--------~d-------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~ 324 (595)
|+|++. .++.+.+ .+ ...+|.++.++|||||++++++....-. ..-..+..++++.
T Consensus 332 D~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~---ene~~v~~~l~~~ 408 (450)
T 2yxl_A 332 DKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE---ENEKNIRWFLNVH 408 (450)
T ss_dssp EEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG---GTHHHHHHHHHHC
T ss_pred CEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh---hHHHHHHHHHHhC
Confidence 999962 2222111 01 1468999999999999999988633222 2233456666654
Q ss_pred -CcEEE
Q 007645 325 -CYELI 329 (595)
Q Consensus 325 -~w~~v 329 (595)
+|+.+
T Consensus 409 ~~~~~~ 414 (450)
T 2yxl_A 409 PEFKLV 414 (450)
T ss_dssp SSCEEC
T ss_pred CCCEEe
Confidence 45543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.5e-09 Score=102.17 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=76.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc----cCCCCC--CceeEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR----RLPFPA--FSFDIVH 269 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~----~LPfpd--~sFDlV~ 269 (595)
.+|||||||+|.++..|++.-.....++++|+++.+++.|+++ +. .+.+...++. .++..+ ++||+|+
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~ 153 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF 153 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence 3899999999999999998732235788999999999999865 44 3677777743 334444 7899999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.... .+...++.++.++|||||++++...
T Consensus 154 ~d~~~----~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 154 IDADK----RNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp ECSCG----GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred ECCCH----HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 87542 3567899999999999999999754
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=108.80 Aligned_cols=110 Identities=19% Similarity=0.196 Sum_probs=79.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH----cCC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE----RGI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e----rg~--~~~~~~~d~~~ 257 (595)
..|.+.|.+......++ +|||||||+|.++...+++|.. .|.++|.|+ +++.|++ ++. .+.++..+++.
T Consensus 69 ~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~ 143 (376)
T 4hc4_A 69 DAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGAR--RVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVET 143 (376)
T ss_dssp HHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCC--EEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeee
Confidence 45555665443334444 8999999999999888888753 567788875 5555553 454 37888888888
Q ss_pred CCCCCCceeEEEEcC---CCcccccCHHHHHHHHHhhcCCCcEEEE
Q 007645 258 LPFPAFSFDIVHCSR---CLIPFTAYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 258 LPfpd~sFDlV~~s~---vL~h~~~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
+.++ +.||+|+|.. +|.+ ......++....|.|||||.++-
T Consensus 144 ~~lp-e~~DvivsE~~~~~l~~-e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 144 VELP-EQVDAIVSEWMGYGLLH-ESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCCS-SCEEEEECCCCBTTBTT-TCSHHHHHHHHHHHEEEEEEEES
T ss_pred ecCC-ccccEEEeecccccccc-cchhhhHHHHHHhhCCCCceECC
Confidence 8877 6899999833 2322 13567889999999999999864
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.1e-09 Score=107.24 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=76.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEccccc-CCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGTRR-LPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~~~-LPfpd~sFDlV~~ 270 (595)
..+|||||||+|.++..++++. ....++++|+++.+++.|+++ ..++.+...|+.. ++..+++||+|++
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~ 174 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 174 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence 4589999999999999999873 235889999999999999875 2357888888654 4445689999998
Q ss_pred cCCCccccc----CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 271 SRCLIPFTA----YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 271 s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.... ++.. ....++.++.++|||||.+++..
T Consensus 175 d~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 175 DSSD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp ECC------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 6543 3221 12468999999999999999976
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=6e-09 Score=104.27 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+.... . ..+|||||||+|..+..|++.-.....++++|+++.+++.|+++ +. .+.+..+++.
T Consensus 67 ~~~ll~~l~~~~---~--~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~ 141 (247)
T 1sui_A 67 EGQFLSMLLKLI---N--AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL 141 (247)
T ss_dssp HHHHHHHHHHHT---T--CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHhh---C--cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence 344555444432 2 23899999999999999988632235889999999999999865 44 4678887764
Q ss_pred c-CCC------CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 R-LPF------PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 ~-LPf------pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
. ++. ++++||+|++.... .+...++.++.++|||||++++..
T Consensus 142 ~~l~~l~~~~~~~~~fD~V~~d~~~----~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 142 PVLDEMIKDEKNHGSYDFIFVDADK----DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHHHHHHHSGGGTTCBSEEEECSCS----TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HHHHHHHhccCCCCCEEEEEEcCch----HHHHHHHHHHHHhCCCCeEEEEec
Confidence 4 232 25789999987542 356789999999999999999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-09 Score=108.67 Aligned_cols=98 Identities=12% Similarity=0.024 Sum_probs=76.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC-CCC-----CCceeEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-PFP-----AFSFDIVH 269 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L-Pfp-----d~sFDlV~ 269 (595)
.+|||||||+|..+..|++.-.....++++|+++.+++.|+++ +. ++.+..+|+... +.. +++||+|+
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~ 141 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIF 141 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEE
Confidence 3899999999999999998632245788999999888777655 44 578888886543 321 47899999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+... ..+...++.++.++|||||++++...
T Consensus 142 ~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 142 IDAD----KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EESC----GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EcCC----hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 8754 23556789999999999999999654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.5e-09 Score=107.68 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=75.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccccc-CCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~-LPfpd~sFDlV~~ 270 (595)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++. .++.+...|+.. ++..+++||+|++
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 4589999999999999999873 3458899999999999999863 246777777654 3335678999998
Q ss_pred cCCCcccccCH----HHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTAYN----ATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~d~----~~~L~Ei~RvLRPGG~lvls~p 303 (595)
... .++.... ..++.++.++|+|||.+++...
T Consensus 188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp CCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 653 2332111 5789999999999999999763
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=107.57 Aligned_cols=123 Identities=10% Similarity=0.087 Sum_probs=88.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEccccc-CCC---CCCceeEEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRR-LPF---PAFSFDIVHC 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~-LPf---pd~sFDlV~~ 270 (595)
.+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ ++ ++.+.++|+.. ++. ..++||+|++
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~ 291 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 291 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEE
Confidence 4899999999999999998753 3788999999999998865 44 57888888654 221 2458999998
Q ss_pred cCCCc--------ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 271 SRCLI--------PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 271 s~vL~--------h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
..... ....+...++.++.++|+|||.++++..+.... .+..++.+.+.+...+.+
T Consensus 292 DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~i~~~~~~~g~~ 355 (385)
T 2b78_A 292 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKKQIEKGFGKQKHT 355 (385)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCc
Confidence 54331 111223457788899999999999988644332 222355566677777776
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.6e-08 Score=97.17 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=94.8
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccc-ccCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGT-RRLP 259 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~-~~LP 259 (595)
++.+.++++. ..+|||||||+|.++..++..+. ...+.++|+++.+++.|+++ ++ .+.+...|. ..++
T Consensus 6 L~~l~~~v~~----g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~ 80 (225)
T 3kr9_A 6 LELVASFVSQ----GAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE 80 (225)
T ss_dssp HHHHHTTSCT----TEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC
T ss_pred HHHHHHhCCC----CCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcc
Confidence 3445555542 24899999999999999999853 45788999999999999876 55 367777775 3443
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
. ...||+|+...+.-. -...+|.+....|+++|+|+++.. ..-..+.+.+.+.+|.++..
T Consensus 81 ~-~~~~D~IviaG~Gg~---~i~~Il~~~~~~L~~~~~lVlq~~--------~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 81 E-TDQVSVITIAGMGGR---LIARILEEGLGKLANVERLILQPN--------NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp G-GGCCCEEEEEEECHH---HHHHHHHHTGGGCTTCCEEEEEES--------SCHHHHHHHHHHTTEEEEEE
T ss_pred c-CcCCCEEEEcCCChH---HHHHHHHHHHHHhCCCCEEEEECC--------CCHHHHHHHHHHCCCEEEEE
Confidence 2 126999987654311 245789999999999999999753 12456888888999998876
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=105.13 Aligned_cols=101 Identities=12% Similarity=0.065 Sum_probs=76.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccccc-CCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~-LPfpd~sFDlV~~ 270 (595)
..+|||||||+|.++..++++. ....++++|+++.+++.|+++. .++.+...|+.. ++..+++||+|++
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 3589999999999999999872 2358889999999999998763 357888888654 3445678999998
Q ss_pred cCCCccccc-----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTA-----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~-----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
... .++.. ....++.++.++|||||.+++...
T Consensus 170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 532 23111 125789999999999999999864
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=9.6e-09 Score=107.06 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=77.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccccc-CCCCCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRR-LPFPAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~-LPfpd~sFDlV~~ 270 (595)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++. .++.+...|... ++..+++||+|++
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 4589999999999999999872 2458899999999999999863 247788887654 3334578999998
Q ss_pred cCCCcccc--cC--HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFT--AY--NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~--~d--~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
... .++. .. ...++.++.++|||||.+++...
T Consensus 196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 653 2321 11 16889999999999999999754
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=104.55 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=75.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------------CCeEEEEccccc-CCCCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------------IPAFVAMLGTRR-LPFPAFS 264 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------------~~~~~~~~d~~~-LPfpd~s 264 (595)
..+|||||||+|.++..++++ ....++++|+++.+++.|+++. .++.+...|+.. ++. +++
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 458999999999999999988 3458899999999999998763 246777777543 222 578
Q ss_pred eeEEEEcCCCccccc--C--HHHHHHHHHhhcCCCcEEEEEc
Q 007645 265 FDIVHCSRCLIPFTA--Y--NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 265 FDlV~~s~vL~h~~~--d--~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
||+|++.... ++.. . ...++.++.++|+|||.+++..
T Consensus 153 fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999986543 3221 1 2578999999999999999975
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-08 Score=98.12 Aligned_cols=93 Identities=11% Similarity=0.007 Sum_probs=67.8
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC-----------CCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP-----------AFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp-----------d~sFDlV~ 269 (595)
..+|||+|||+|.++..++++ ...++++|+++.. ...++.+.++|+...+.. .++||+|+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vl 96 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME------EIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVV 96 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC------CCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEE
T ss_pred CCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc------cCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEe
Confidence 349999999999999999988 3478888988642 123578888887765421 14899999
Q ss_pred EcCCCc---ccccC-------HHHHHHHHHhhcCCCcEEEEEc
Q 007645 270 CSRCLI---PFTAY-------NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 270 ~s~vL~---h~~~d-------~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
|..... ++..+ ...++.++.++|||||.|++..
T Consensus 97 sd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 97 SDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp ECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 965321 11111 2367889999999999999875
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-09 Score=100.40 Aligned_cols=98 Identities=15% Similarity=0.094 Sum_probs=75.9
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC-C-CCC----CceeEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-P-FPA----FSFDIVH 269 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L-P-fpd----~sFDlV~ 269 (595)
.+|||+|||+|.++..+++.......++++|+++.+++.|+++ +. .+.+...++... + +++ ++||+|+
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~ 150 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 150 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence 3899999999999999998632245889999999999998875 43 577888775432 1 111 6899999
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.... .+...++.++.++|||||.+++...
T Consensus 151 ~d~~~----~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 151 VDADK----ENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp ECSCS----TTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCH----HHHHHHHHHHHHHcCCCeEEEEECC
Confidence 87542 3556889999999999999999653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-08 Score=109.66 Aligned_cols=133 Identities=18% Similarity=0.148 Sum_probs=91.8
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC-CCCCceeE
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP-FPAFSFDI 267 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP-fpd~sFDl 267 (595)
.+....+. +|||+|||+|..+..|+++......++++|+++.+++.++++ |+.+.+...|+..++ +.+++||+
T Consensus 96 ~L~~~~g~--~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 96 LLDPKPGE--RVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEE
T ss_pred hcCcCCCC--EEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCE
Confidence 33444444 899999999999999997632234788999999999988765 666777777876665 34678999
Q ss_pred EEEcC------CCcc-------ccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc-C
Q 007645 268 VHCSR------CLIP-------FTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL-C 325 (595)
Q Consensus 268 V~~s~------vL~h-------~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~-~ 325 (595)
|++.. ++.. |.. ....+|.++.++|||||+|++++-...-. ..-..++.++++. .
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~e---Ene~vv~~~l~~~~~ 250 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPE---ENEGVVAHFLKAHPE 250 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG---GTHHHHHHHHHHCTT
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchh---cCHHHHHHHHHHCCC
Confidence 99621 1111 110 11578999999999999999988643322 2234566666665 4
Q ss_pred cEEEE
Q 007645 326 YELIA 330 (595)
Q Consensus 326 w~~v~ 330 (595)
|+++.
T Consensus 251 ~~l~~ 255 (464)
T 3m6w_A 251 FRLED 255 (464)
T ss_dssp EEEEC
T ss_pred cEEEe
Confidence 66553
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=102.56 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=74.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEcccccCCCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGTRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~~~LPfpd~sFDlV~~s 271 (595)
.++|||||||+|.++..+++.+ ..++.+|+++.+++.|+++. ..+.+...|..... ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 4589999999999999999883 58899999999999987652 24677777776554 789999986
Q ss_pred CCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 272 RCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 272 ~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. .++..++.++.++|||||.+++...
T Consensus 147 ~------~dp~~~~~~~~~~L~pgG~lv~~~~ 172 (262)
T 2cmg_A 147 Q------EPDIHRIDGLKRMLKEDGVFISVAK 172 (262)
T ss_dssp S------CCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred C------CChHHHHHHHHHhcCCCcEEEEEcC
Confidence 2 2445689999999999999999753
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.74 E-value=3e-08 Score=101.42 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=80.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~ 257 (595)
...++.+.+.+....+. +|||||||+|.++..|++++. .++++|+++.+++.++++. .++.+..+|+..
T Consensus 14 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~ 88 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLK 88 (285)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTT
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceec
Confidence 45667777777665544 899999999999999998853 7889999999999998762 257888899888
Q ss_pred CCCCCCceeEEEEcCCCcccccCHH-HHH--------------HHH--HhhcCCCcEEE
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNA-TYL--------------IEV--DRLLRPGGYLV 299 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~-~~L--------------~Ei--~RvLRPGG~lv 299 (595)
++++ +||+|+++..+ ++....- .++ +|+ .++|+|||.++
T Consensus 89 ~~~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 89 TDLP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp SCCC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ccch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 7765 79999997655 4432111 222 333 36899999874
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-07 Score=97.53 Aligned_cols=145 Identities=9% Similarity=0.127 Sum_probs=101.1
Q ss_pred CCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--Ce
Q 007645 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PA 248 (595)
Q Consensus 175 ~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~ 248 (595)
..++|..+...-...+.+.+. .| .+|||+|||+|.|+..++.++. ..+.++|+++.+++.++++ ++ .+
T Consensus 104 ~k~~f~~~~~~er~ri~~~~~--~g--~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v 177 (278)
T 3k6r_A 104 AKIMFSPANVKERVRMAKVAK--PD--ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRM 177 (278)
T ss_dssp TTSCCCGGGHHHHHHHHHHCC--TT--CEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred cceEEcCCcHHHHHHHHHhcC--CC--CEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcE
Confidence 345565555555556666653 23 3999999999999999998853 3688999999999988765 44 36
Q ss_pred EEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 249 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 249 ~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
.+..+|+..++ +.+.||.|++.... ....+|..+.++||+||.+.+......-.......+.++++++..+++.
T Consensus 178 ~~~~~D~~~~~-~~~~~D~Vi~~~p~-----~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 178 SAYNMDNRDFP-GENIADRILMGYVV-----RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp EEECSCTTTCC-CCSCEEEEEECCCS-----SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred EEEeCcHHHhc-cccCCCEEEECCCC-----cHHHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 77788887776 35789999976321 3346788899999999998764321001111223566888888889876
Q ss_pred EEe
Q 007645 329 IAV 331 (595)
Q Consensus 329 v~~ 331 (595)
...
T Consensus 252 ~~~ 254 (278)
T 3k6r_A 252 EKL 254 (278)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-08 Score=99.11 Aligned_cols=97 Identities=10% Similarity=0.032 Sum_probs=75.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccC-C-C-----CCCceeEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRL-P-F-----PAFSFDIV 268 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~L-P-f-----pd~sFDlV 268 (595)
++|||||||+|..+..|++.-.....++++|+++.+++.|+++ +. .+.+..+|+... + + ++++||+|
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I 151 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFG 151 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEE
Confidence 4899999999999999988632235888999999999999865 54 367787775432 2 1 25789999
Q ss_pred EEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 269 HCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 269 ~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++... ..+...++.++.++|||||++++..
T Consensus 152 ~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 152 FVDAD----KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCc----hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 98642 3356789999999999999999865
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.7e-08 Score=105.56 Aligned_cols=131 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred hhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC--CCCCce
Q 007645 192 QYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP--FPAFSF 265 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP--fpd~sF 265 (595)
..+....+. +|||+|||+|..+..+++.... ..++++|+++.+++.++++ +.++.+...|...++ +++++|
T Consensus 240 ~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 240 TWLAPQNGE--HILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHCCCTTC--EEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHcCCCCcC--eEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 334444444 8999999999999999987433 5789999999999888765 667788888887765 566899
Q ss_pred eEEEEcC------CCcccccCH----------------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 266 DIVHCSR------CLIPFTAYN----------------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 266 DlV~~s~------vL~h~~~d~----------------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
|+|++.. ++.+-+ +. ..+|.++.++|||||++++++....-.+ ....+..++++
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p-~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~e---ne~~v~~~l~~ 392 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHP-DIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEE---NSLQIKAFLQR 392 (429)
T ss_dssp EEEEEECCCCCGGGTTTCT-THHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGG---THHHHHHHHHH
T ss_pred CEEEEeCCCCcccccCCCc-chhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhh---HHHHHHHHHHh
Confidence 9999622 222211 11 3779999999999999999885332221 12345555554
Q ss_pred c-CcEEE
Q 007645 324 L-CYELI 329 (595)
Q Consensus 324 ~-~w~~v 329 (595)
. .|+++
T Consensus 393 ~~~~~~~ 399 (429)
T 1sqg_A 393 TADAELC 399 (429)
T ss_dssp CTTCEEC
T ss_pred CCCCEEe
Confidence 3 45543
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=7.7e-09 Score=107.13 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=65.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecC----cHHHHHHHHHc--C-CCeEEEEc-ccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDS----HKAQIQFALER--G-IPAFVAML-GTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~----s~~~l~~A~er--g-~~~~~~~~-d~~~LPfpd~sFDlV~~s~ 272 (595)
..+|||+|||+|.++..+++++ .+.++|+ ++.+++.+..+ + ..+.+.+. |+..+| .++||+|+|..
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~----~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~--~~~fD~V~sd~ 156 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLK----NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIP--PERCDTLLCDI 156 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTST----TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCEEEEEcCCCCHHHHHHHhcC----CEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCC--cCCCCEEEECC
Confidence 3499999999999999999882 4556666 34332211111 1 23666666 666654 56899999976
Q ss_pred CCc--ccccCHH---HHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLI--PFTAYNA---TYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~--h~~~d~~---~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++ ++..+.. .+|.++.++|||||.|++...
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 653 2221222 478999999999999998653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.5e-08 Score=102.35 Aligned_cols=121 Identities=13% Similarity=0.027 Sum_probs=87.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccCCC----CCCceeEEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRLPF----PAFSFDIVHC 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~LPf----pd~sFDlV~~ 270 (595)
.+|||+|||+|.++..++..+ ...++++|+++.+++.|+++ ++ ++.+..+|+..... .+++||+|++
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 489999999999999999886 34788999999999998865 55 57888888655421 1468999999
Q ss_pred cCCCc--------ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHH-HHHHHHHHcCc
Q 007645 271 SRCLI--------PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-DLQAVARALCY 326 (595)
Q Consensus 271 s~vL~--------h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~-~l~~la~~~~w 326 (595)
..... +.......++.++.++|+|||.++++..+.... ...+. .+.+.+...++
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~i~~~~~~~g~ 362 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT--SDLFQKIIADAAIDAGR 362 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC--HHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC--HHHHHHHHHHHHHHcCC
Confidence 64221 111345688999999999999999988644332 11233 34446666653
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=102.53 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=89.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCC----ceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSENI----LTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv----~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
..+|||+|||+|.++..+++... ....+.++|+++.+++.|+.+ +.++.+...|+.. +.+.+.||+|+++.
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~-~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA-NLLVDPVDVVISDL 209 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS-CCCCCCEEEEEEEC
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCC-ccccCCccEEEECC
Confidence 45899999999999998887621 126899999999999998875 6678888888654 33467899999998
Q ss_pred CCcccccCH-----------------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 273 CLIPFTAYN-----------------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 273 vL~h~~~d~-----------------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
.+.++..+. ..++.++.+.|+|||+++++.|..... .. .-..+.+.+.+.++
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~-~~-~~~~ir~~l~~~~~ 278 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFG-TS-DFAKVDKFIKKNGH 278 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGG-ST-THHHHHHHHHHHEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcC-Cc-hHHHHHHHHHhCCe
Confidence 875543111 157999999999999999998744221 11 23456665555555
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-08 Score=106.07 Aligned_cols=133 Identities=12% Similarity=0.039 Sum_probs=91.3
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC-CCCCcee
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP-FPAFSFD 266 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP-fpd~sFD 266 (595)
.+....+. +|||+|||+|..+..|++.-.....++++|+++.+++.++++ |+ ++.+...|...++ ..+++||
T Consensus 100 ~L~~~~g~--~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 100 AAAAKPGE--KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEE
T ss_pred HcCCCCCC--EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCC
Confidence 33344444 899999999999999987622224788999999999888765 55 4667777776654 3357899
Q ss_pred EEEEcCC---CcccccC------------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC
Q 007645 267 IVHCSRC---LIPFTAY------------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC 325 (595)
Q Consensus 267 lV~~s~v---L~h~~~d------------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~ 325 (595)
+|++..- ...+..+ ...+|.++.++|||||++++++-...- +..-..++.++++.+
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~---eEne~vv~~~l~~~~ 254 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAP---EENEEIISWLVENYP 254 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCG---GGTHHHHHHHHHHSS
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeeccc---ccCHHHHHHHHHhCC
Confidence 9997431 1011111 126799999999999999998863332 222345777888877
Q ss_pred cEEEE
Q 007645 326 YELIA 330 (595)
Q Consensus 326 w~~v~ 330 (595)
++++.
T Consensus 255 ~~l~~ 259 (456)
T 3m4x_A 255 VTIEE 259 (456)
T ss_dssp EEEEC
T ss_pred CEEEe
Confidence 66553
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.4e-08 Score=106.22 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=86.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCC-CCCceeEEEEcC--
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPF-PAFSFDIVHCSR-- 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPf-pd~sFDlV~~s~-- 272 (595)
..+|||+|||+|..+..|++.-.....++++|+++.+++.++++ |+ ++.+...|...++. .+++||.|++..
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 34899999999999999998632234788999999999988765 55 57788888877653 457899999721
Q ss_pred ----CCc-------cccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC
Q 007645 273 ----CLI-------PFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC 325 (595)
Q Consensus 273 ----vL~-------h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~ 325 (595)
++. +|.. ....+|.++.++|||||++++++......+.+ ..++.++++..
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~Ene---~vv~~~l~~~~ 266 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENE---AVCLWLKETYP 266 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTTH---HHHHHHHHHST
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccCH---HHHHHHHHHCC
Confidence 111 1210 12367999999999999999998644333222 34556666544
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.7e-08 Score=97.97 Aligned_cols=99 Identities=16% Similarity=0.005 Sum_probs=78.0
Q ss_pred CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 199 GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 199 g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
+...+|||+|||+|.++..+. ....+++.|+++.++++++++ +.+..+.+.|....+.+ ++||+|++.-++
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~l 178 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLL 178 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCH
T ss_pred CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHH
Confidence 345699999999999999887 234889999999999998876 67788888888877766 589999999888
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++.......+.++.+.|+++|.++-..
T Consensus 179 h~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 179 PLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred HHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 6664222334448888999998776543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=101.64 Aligned_cols=121 Identities=14% Similarity=-0.013 Sum_probs=83.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccC-CCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL-PFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~L-Pfpd~sFDlV~~s~vL~ 275 (595)
..+|||+|||+|.++..++..+. .++++|+|+.+++.|+++ ++...+.+.|+..+ +...+.||+|++.....
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga---~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA---YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCeEEEcccchhHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 34899999999999999999864 388999999999998865 66666777776553 22234499999864321
Q ss_pred cc--------ccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHH-HHHHHHHHcCc
Q 007645 276 PF--------TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-DLQAVARALCY 326 (595)
Q Consensus 276 h~--------~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~-~l~~la~~~~w 326 (595)
.- ..+...++.++.++|||||++++++...... ...|. .+.+.+...+.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~--~~~f~~~v~~a~~~~g~ 349 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLR--LEDLLEVARRAAADLGR 349 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC--HHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC--HHHHHHHHHHHHHHhCC
Confidence 11 1133478899999999999999876532221 22233 35555555543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=108.26 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=87.3
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEccccc-CCCCCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRR-LPFPAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~-LPfpd~sFDlV~~s~v 273 (595)
.+|||+|||+|.++..++..+. ..++++|+|+.+++.|+++ ++ ++.+.+.|+.. ++...++||+|++...
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP 618 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP 618 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred CcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence 3899999999999999998764 3688999999999999875 44 37888888765 4445688999999542
Q ss_pred Cc----------ccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcE
Q 007645 274 LI----------PFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYE 327 (595)
Q Consensus 274 L~----------h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~ 327 (595)
.. +...+...++.++.++|+|||+|+++.....+... .+.+++.+++
T Consensus 619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~-------~~~l~~~g~~ 675 (703)
T 3v97_A 619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMD-------LDGLAKLGLK 675 (703)
T ss_dssp SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCC-------HHHHHHTTEE
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccC-------HHHHHHcCCc
Confidence 11 11234457899999999999999999875444432 2445556665
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-08 Score=99.94 Aligned_cols=127 Identities=12% Similarity=0.110 Sum_probs=89.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..++... ....+.++|+++.++++++++ |++..+.+.|...-+ +.+.||+|+++-++++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLPC 210 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHHH
T ss_pred CceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHHH
Confidence 5699999999999999988763 345899999999999998876 778888887765544 4578999999999977
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC-CCCCCCCch--hH-HHHHHHHHHcCcEEE
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP-PVQWPKQDK--EW-ADLQAVARALCYELI 329 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p-~~~~~~~~~--~w-~~l~~la~~~~w~~v 329 (595)
+.+.....+.++.+.|+|+|.++-... ...-..... .+ ..+++.+..-+|..-
T Consensus 211 Le~q~kg~g~~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~ 267 (281)
T 3lcv_B 211 LETQQRGSGWEVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQ 267 (281)
T ss_dssp HHHHSTTHHHHHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhhhhHHHHHHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCcee
Confidence 753323344499999999999876543 111111111 12 225666666677443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=7.2e-08 Score=102.67 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=93.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~ 263 (595)
...++.+.+.+.... ..+|||+|||+|.++..++++......+.++|+++.+++.| ..+.+.+.|....+ +++
T Consensus 25 ~~l~~~~~~~~~~~~--~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~~-~~~ 97 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGE 97 (421)
T ss_dssp HHHHHHHHHHCCCCT--TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSS
T ss_pred HHHHHHHHHhhccCC--CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----CCCcEEeCChhhcC-ccC
Confidence 455666777765433 33899999999999999987621234789999999988777 45778888877654 347
Q ss_pred ceeEEEEcCCCcccc----------cC------------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHH
Q 007645 264 SFDIVHCSRCLIPFT----------AY------------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA 315 (595)
Q Consensus 264 sFDlV~~s~vL~h~~----------~d------------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~ 315 (595)
.||+|+++-.+.... ++ ...++..+.++|+|||++++..|.. |... ....
T Consensus 98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~-~l~~-~~~~ 175 (421)
T 2ih2_A 98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT-WLVL-EDFA 175 (421)
T ss_dssp CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG-GGTC-GGGH
T ss_pred CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH-HhcC-ccHH
Confidence 899999964332111 11 1156889999999999999998743 2211 1245
Q ss_pred HHHHHHHHcCc
Q 007645 316 DLQAVARALCY 326 (595)
Q Consensus 316 ~l~~la~~~~w 326 (595)
.+.+.+.+.++
T Consensus 176 ~lr~~l~~~~~ 186 (421)
T 2ih2_A 176 LLREFLAREGK 186 (421)
T ss_dssp HHHHHHHHHSE
T ss_pred HHHHHHHhcCC
Confidence 67777776676
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-07 Score=99.96 Aligned_cols=120 Identities=17% Similarity=0.073 Sum_probs=85.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCC----CCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPF----PAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPf----pd~sFDlV~~s 271 (595)
..+|||+|||+|.++..++.. ...++++|+++.+++.|+++ ++. +.+..+|+..... .+++||+|++.
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 458999999999999999987 56899999999999998876 443 7888888655421 25789999985
Q ss_pred CCCccc--------ccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHH-HHHHHHHHcC
Q 007645 272 RCLIPF--------TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWA-DLQAVARALC 325 (595)
Q Consensus 272 ~vL~h~--------~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~-~l~~la~~~~ 325 (595)
...... ......++.++.++|+|||.++++....... ...|. .+.+.+...+
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~i~~~~~~~g 347 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT--EPLFYAMVAEAAQDAH 347 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC--HHHHHHHHHHHHHHTT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC--HHHHHHHHHHHHHHcC
Confidence 432111 1234578999999999999999998643332 22233 3445555554
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=98.15 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=63.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LP 259 (595)
..++.+.+.+....+. +|||+|||+|.++..|++++ ..++++|+++.+++.|+++ + .++.+..+|+..++
T Consensus 29 ~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~La~~~---~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~ 103 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSD--IVLEIGCGTGNLTVKLLPLA---KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV 103 (299)
T ss_dssp HHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHTTTS---SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC
T ss_pred HHHHHHHHhcCCCCcC--EEEEEcCcCcHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC
Confidence 4566666666554444 89999999999999999874 3788999999999998875 3 35778888888777
Q ss_pred CCCCceeEEEEcCCCcccc
Q 007645 260 FPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~ 278 (595)
++ +||+|+++... ++.
T Consensus 104 ~~--~~D~Vv~n~py-~~~ 119 (299)
T 2h1r_A 104 FP--KFDVCTANIPY-KIS 119 (299)
T ss_dssp CC--CCSEEEEECCG-GGH
T ss_pred cc--cCCEEEEcCCc-ccc
Confidence 64 89999997655 444
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.5e-07 Score=100.25 Aligned_cols=123 Identities=15% Similarity=-0.017 Sum_probs=86.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC----CCCceeEEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF----PAFSFDIVHC 270 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf----pd~sFDlV~~ 270 (595)
..+|||+|||+|.++..++..+. ..++++|+++.+++.|+++ ++ ++.+..+|+..+.. .+++||+|++
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 34899999999999999998753 3788999999999988765 54 57888888755421 2578999999
Q ss_pred cCCCccc--------ccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHH-HHHHHHHcCcE
Q 007645 271 SRCLIPF--------TAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWAD-LQAVARALCYE 327 (595)
Q Consensus 271 s~vL~h~--------~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~-l~~la~~~~w~ 327 (595)
....... ..+...++.++.++|+|||.+++++...... ...|.. +.+.+...+.+
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--~~~~~~~v~~~~~~~~~~ 359 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD--LQMFKDMIIAAGAKAGKF 359 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC--HHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC--HHHHHHHHHHHHHHcCCe
Confidence 6432111 1234578999999999999999987643332 122333 44455554443
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.1e-07 Score=92.86 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=65.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.+.+.+....+. +|||+|||+|.++..|++++ ..++++|+++.+++.++++. .++.+..+|+..+++
T Consensus 16 ~~~~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~ 90 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 90 (244)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhCCCCCCC--EEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCc
Confidence 45667777777655444 89999999999999999986 47889999999999999874 367889999999888
Q ss_pred CC-CceeEEEEcC
Q 007645 261 PA-FSFDIVHCSR 272 (595)
Q Consensus 261 pd-~sFDlV~~s~ 272 (595)
++ ..| .|+++.
T Consensus 91 ~~~~~~-~vv~nl 102 (244)
T 1qam_A 91 PKNQSY-KIFGNI 102 (244)
T ss_dssp CSSCCC-EEEEEC
T ss_pred ccCCCe-EEEEeC
Confidence 74 456 455554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.1e-07 Score=93.77 Aligned_cols=90 Identities=12% Similarity=0.130 Sum_probs=73.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
.+|||+|||+|.++.. ++. ...++++|+++.+++.|+++ ++ ++.+..+|+..+. ++||+|++....
T Consensus 197 ~~VLDlg~G~G~~~l~-a~~---~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~- 268 (336)
T 2yx1_A 197 DVVVDMFAGVGPFSIA-CKN---AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK- 268 (336)
T ss_dssp CEEEETTCTTSHHHHH-TTT---SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT-
T ss_pred CEEEEccCccCHHHHh-ccC---CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH-
Confidence 4899999999999999 773 34788999999999998875 44 5788888887765 789999986322
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....++.++.++|+|||.+++.+.
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 223689999999999999998764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-07 Score=97.41 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=72.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCcc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h 276 (595)
..+|||+|||+|.++..|++.+ ..+.++|+++.+++.|+++ ++.+.+..+|+..+.. .+||+|++......
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~--~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSV--KGFDTVIVDPPRAG 365 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCC--TTCSEEEECCCTTC
T ss_pred CCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCc--cCCCEEEEcCCccc
Confidence 3489999999999999999874 3788999999999998765 5557888888877642 28999998654322
Q ss_pred cccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 277 FTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 277 ~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. ...++..+ +.|+|||.++++..
T Consensus 366 ~---~~~~~~~l-~~l~p~givyvsc~ 388 (425)
T 2jjq_A 366 L---HPRLVKRL-NREKPGVIVYVSCN 388 (425)
T ss_dssp S---CHHHHHHH-HHHCCSEEEEEESC
T ss_pred h---HHHHHHHH-HhcCCCcEEEEECC
Confidence 1 23455555 45999999999863
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=94.75 Aligned_cols=131 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
...+++.+.+.+....+ .+|||+|||+|.++..|++.+ ..+.++|+++.+++.|+++ ++ ++.+...|+..
T Consensus 271 ~e~l~~~~~~~l~~~~~--~~VLDlgcG~G~~~~~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~ 345 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPE--DRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 345 (433)
T ss_dssp HHHHHHHHHHHHTCCTT--CEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred HHHHHHHHHHhhcCCCC--CEEEECCCCCCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence 34456666666654443 389999999999999999873 4788999999999998865 44 58888888766
Q ss_pred ----CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 258 ----LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 258 ----LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+++++++||+|++.--... ...++..+. .++|++.++++..+. ...+-...+.+.+|++..
T Consensus 346 ~l~~~~~~~~~fD~Vv~dPPr~g----~~~~~~~l~-~~~p~~ivyvsc~p~-------tlard~~~l~~~Gy~~~~ 410 (433)
T 1uwv_A 346 DVTKQPWAKNGFDKVLLDPARAG----AAGVMQQII-KLEPIRIVYVSCNPA-------TLARDSEALLKAGYTIAR 410 (433)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHH-HHCCSEEEEEESCHH-------HHHHHHHHHHHTTCEEEE
T ss_pred HhhhhhhhcCCCCEEEECCCCcc----HHHHHHHHH-hcCCCeEEEEECChH-------HHHhhHHHHHHCCcEEEE
Confidence 4566789999998754322 124455544 378999999876311 122222333445787765
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-09 Score=104.06 Aligned_cols=110 Identities=10% Similarity=0.074 Sum_probs=79.2
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfpd 262 (595)
.++.+.+.+....+ .+|||+|||+|.++..|++++ ..++++|+++.+++.|+++. .++.+..+|...+++++
T Consensus 17 ~~~~i~~~~~~~~~--~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 17 VLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHhcCCCCC--CEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCccc
Confidence 34556666665444 489999999999999999885 47899999999998887653 34778888988888874
Q ss_pred -CceeEEEEcCCCc-----------ccccCHHHHH----HHHHhhcCCCcEEEEEc
Q 007645 263 -FSFDIVHCSRCLI-----------PFTAYNATYL----IEVDRLLRPGGYLVISG 302 (595)
Q Consensus 263 -~sFDlV~~s~vL~-----------h~~~d~~~~L----~Ei~RvLRPGG~lvls~ 302 (595)
++| .|+++.... |+. ....++ ..+.|+|+|||.+.+..
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~-~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFESR-ASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHCC-CEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCCC-CCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 677753321 111 122233 66889999999887754
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=5.3e-07 Score=92.78 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=75.3
Q ss_pred cceEEEECCCC------cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEE-EEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGV------ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFV-AMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGt------G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~-~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+ |+ ..++++-.....++++|+++. + .++.+ .++|+..++++ ++||+|+|+..
T Consensus 64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~~v~~~i~gD~~~~~~~-~~fD~Vvsn~~ 132 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------SDADSTLIGDCATVHTA-NKWDLIISDMY 132 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------CSSSEEEESCGGGCCCS-SCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------CCCEEEEECccccCCcc-CcccEEEEcCC
Confidence 34899999944 66 333333111247889999987 1 24667 88998888765 78999999743
Q ss_pred Ccccc-----------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 274 LIPFT-----------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 274 L~h~~-----------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
. ++. .....++.++.|+|||||.|++......+ ...+.+++++.+|..+.
T Consensus 133 ~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~------~~~l~~~l~~~GF~~v~ 193 (290)
T 2xyq_A 133 D-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW------NADLYKLMGHFSWWTAF 193 (290)
T ss_dssp C-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC------CHHHHHHHTTEEEEEEE
T ss_pred c-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC------HHHHHHHHHHcCCcEEE
Confidence 2 110 11247899999999999999997642211 23566777777776543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-07 Score=99.14 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=95.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcC------------CceEEEEeecCcHHHHHHHHHc----CC--
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSEN------------ILTLSFAPRDSHKAQIQFALER----GI-- 246 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~g------------v~~~~v~~vD~s~~~l~~A~er----g~-- 246 (595)
..++.+.+.+....+ .+|||.|||+|.++..+++.- .....+.|+|+++.+++.|+.+ +.
T Consensus 158 ~v~~~mv~~l~~~~~--~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~ 235 (445)
T 2okc_A 158 PLIQAMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT 235 (445)
T ss_dssp HHHHHHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCCCC--CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 455666666654443 389999999999998877641 0224688999999999998764 55
Q ss_pred -CeEEEEcccccCCCCCCceeEEEEcCCCccccc-C---------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCC
Q 007645 247 -PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-Y---------------NATYLIEVDRLLRPGGYLVISGPPVQWPK 309 (595)
Q Consensus 247 -~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-d---------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~ 309 (595)
...+.++|+...+.. ..||+|+++..+.+... + ...++..+.+.|||||+++++.|.....
T Consensus 236 ~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~- 313 (445)
T 2okc_A 236 DRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLF- 313 (445)
T ss_dssp SCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHH-
T ss_pred CCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccc-
Confidence 567788887666544 48999999876654321 0 1378999999999999999988732111
Q ss_pred CchhHHHHHH-HHHHcCcEEEEe
Q 007645 310 QDKEWADLQA-VARALCYELIAV 331 (595)
Q Consensus 310 ~~~~w~~l~~-la~~~~w~~v~~ 331 (595)
.......+.+ +++...++.+..
T Consensus 314 ~~~~~~~iR~~L~~~~~l~~ii~ 336 (445)
T 2okc_A 314 EAGAGETIRKRLLQDFNLHTILR 336 (445)
T ss_dssp CSTHHHHHHHHHHHHEEEEEEEE
T ss_pred cCcHHHHHHHHHHhcCcEEEEEe
Confidence 1111234444 566655555443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-06 Score=90.93 Aligned_cols=86 Identities=10% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.+.+.+....+. +|||||||+|.++..|++++ ..++++|+++.+++.++++. .++.+..+|+..+++
T Consensus 36 ~~i~~~Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANLTKDD--VVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCc
Confidence 45667777777766554 89999999999999999874 37888999999999998763 578999999999998
Q ss_pred CCCceeEEEEcCCC
Q 007645 261 PAFSFDIVHCSRCL 274 (595)
Q Consensus 261 pd~sFDlV~~s~vL 274 (595)
++.+||.|+++..+
T Consensus 111 ~~~~fD~Iv~NlPy 124 (295)
T 3gru_A 111 NKLDFNKVVANLPY 124 (295)
T ss_dssp GGSCCSEEEEECCG
T ss_pred ccCCccEEEEeCcc
Confidence 88889999988654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.6e-07 Score=92.09 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=68.2
Q ss_pred eeeEEecccchhHHHhhhc-CCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 442 IRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~-~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
-..|||+|||.|+++..|. ..+. +|+-.|-. ..+..+-++ |+..-..-.+..+..+|.+||+|.+..+|.+
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~ 141 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH 141 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence 3589999999999998886 3343 45555543 666666554 4322222122223345689999999999887
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.. .-....+|-|+-|+|||||.+++.+
T Consensus 142 ~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 142 FG-------HERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TC-------TTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cC-------hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 62 2356789999999999999999963
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-06 Score=91.32 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=84.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc-------------------------------------eE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL-------------------------------------TL 226 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-------------------------------------~~ 226 (595)
+.+...+........+ .+|||.+||+|.++..++..+.. ..
T Consensus 181 e~lAa~ll~~~~~~~~--~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAG--RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHHHTSCCCTT--SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHhhCCCCC--CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 3445555555554444 48999999999999887765211 14
Q ss_pred EEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcccc---cCHHHHHHHHHhhcCC--C
Q 007645 227 SFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT---AYNATYLIEVDRLLRP--G 295 (595)
Q Consensus 227 ~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~---~d~~~~L~Ei~RvLRP--G 295 (595)
.+.++|+++.+++.|+++ ++ .+.+.+.|+.+++.+ .+||+|+|+--+..-. ++...+..++.++||+ |
T Consensus 259 ~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g 337 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKN 337 (385)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCC
Confidence 689999999999999876 55 478899998888765 5899999987653222 1234567777778877 8
Q ss_pred cEEEEEcC
Q 007645 296 GYLVISGP 303 (595)
Q Consensus 296 G~lvls~p 303 (595)
|.+++.++
T Consensus 338 ~~~~iit~ 345 (385)
T 3ldu_A 338 WSYYLITS 345 (385)
T ss_dssp CEEEEEES
T ss_pred CEEEEEEC
Confidence 88888775
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.4e-06 Score=80.27 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=94.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHH------------hhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchh
Q 007645 412 YDVFEADSRRWRRRVAYYKNT------------LNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLS 479 (595)
Q Consensus 412 ~~~f~~d~~~w~~~v~~y~~~------------l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~ 479 (595)
.+.|..+...|......|... +........-.+|||+|||.|.++..|. ..|..+-+.+. .+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-~~v~~~D~s~~----~~~ 100 (215)
T 2zfu_A 26 QRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR-NPVHCFDLASL----DPR 100 (215)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-SCEEEEESSCS----STT
T ss_pred HHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-ccEEEEeCCCC----Cce
Confidence 455777777777666655431 1111111233579999999999999884 44444433333 111
Q ss_pred HHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChH---HHHH
Q 007645 480 VIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE---VIDK 556 (595)
Q Consensus 480 ~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~---~~~~ 556 (595)
+ .. + |. +.++.-+.+||+|.+..++. + -....+|-|+-|+|+|||.+++.+-.. ..++
T Consensus 101 ~--~~---~---d~-~~~~~~~~~fD~v~~~~~l~-~---------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 161 (215)
T 2zfu_A 101 V--TV---C---DM-AQVPLEDESVDVAVFCLSLM-G---------TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRT 161 (215)
T ss_dssp E--EE---S---CT-TSCSCCTTCEEEEEEESCCC-S---------SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHH
T ss_pred E--EE---e---cc-ccCCCCCCCEeEEEEehhcc-c---------cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHH
Confidence 1 11 1 11 11222137999999988773 2 245789999999999999999986443 3567
Q ss_pred HHHhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 557 VSRIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 557 ~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
+.+++...-++....+...+ .--+++++|.
T Consensus 162 ~~~~l~~~Gf~~~~~~~~~~---~~~~~~~~k~ 191 (215)
T 2zfu_A 162 FLRAVTKLGFKIVSKDLTNS---HFFLFDFQKT 191 (215)
T ss_dssp HHHHHHHTTEEEEEEECCST---TCEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEecCCC---eEEEEEEEec
Confidence 78888888887766543322 2357778875
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-06 Score=87.48 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCC
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEP 496 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~ 496 (595)
..|...+....+.+...+..+ ..|||+|||.|.++..|..... +|+-.|-. ..+..+-++- +--+..|.. .
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~ 104 (263)
T 3pfg_A 31 KDYHREAADLAALVRRHSPKA--ASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNPDAVLHHGDMR-D 104 (263)
T ss_dssp CCHHHHHHHHHHHHHHHCTTC--CEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCTTSEEEECCTT-T
T ss_pred CCHHHHHHHHHHHHHhhCCCC--CcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCCCCEEEECChH-H
Confidence 455555555555554444433 6899999999999999987642 45555544 6666666552 111112222 2
Q ss_pred CCCCCCccchhhccC-ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 497 FSTYPRTYDLIHVSG-IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 497 f~typrtyDl~H~~~-~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
++. +.+||+|.+.. ++.+.. +.-....+|-++-|+|+|||.+++.
T Consensus 105 ~~~-~~~fD~v~~~~~~l~~~~------~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 105 FSL-GRRFSAVTCMFSSIGHLA------GQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CCC-SCCEEEEEECTTGGGGSC------HHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCc-cCCcCEEEEcCchhhhcC------CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 332 68999999987 777553 2234567899999999999999995
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=84.31 Aligned_cols=133 Identities=15% Similarity=0.198 Sum_probs=89.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhh----cccCCCCCCCC-CccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVY----HDWCEPFSTYP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~----~~wce~f~typ-rtyDl~H~~~~~s~~ 516 (595)
.+|||+|||.|.++.+|..... +|+-.|-. ..+..+-+++.+... .+..+. +..+ .+||+|.+..++.
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~v~~~~~l~-- 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGI---EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEA-KVPVGKDYDLICANFALL-- 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTT-CSCCCCCEEEEEEESCCC--
T ss_pred CEEEEeCCCCCHHHHHHHHCCC---EEEEEcCCHHHHHHHHHhcccccchhhHHhhccc-ccccCCCccEEEECchhh--
Confidence 7899999999999999988754 45555544 677777777533222 222111 2223 5699999988877
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh--------------------------------HHHHHHHHhHhcc
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------------------------------EVIDKVSRIANTV 564 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~--------------------------------~~~~~~~~~~~~~ 564 (595)
. .+...+|-|+-|+|+|||++++.+.. .-.+++.++++.-
T Consensus 128 ~--------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 199 (227)
T 3e8s_A 128 H--------QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMA 199 (227)
T ss_dssp S--------SCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT
T ss_pred h--------hhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHc
Confidence 2 35668999999999999999996420 1357888888888
Q ss_pred CceeEEeccCCCCC---CCceEEEEEec
Q 007645 565 RWTAAVHDKEPGSN---GREKILVATKS 589 (595)
Q Consensus 565 ~W~~~~~~~~~~~~---~~~~~l~~~K~ 589 (595)
-+++........+. ...-+++++|+
T Consensus 200 Gf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 200 GLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp TEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred CCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 88876543221111 12456677764
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=90.41 Aligned_cols=117 Identities=11% Similarity=0.017 Sum_probs=82.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc-------------------------------------eE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL-------------------------------------TL 226 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-------------------------------------~~ 226 (595)
+.+...+........+ .+|||.+||+|.++..++..... ..
T Consensus 187 e~lAa~ll~l~~~~~~--~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPD--RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHHSCCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHhCCCCC--CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 3444555555554443 48999999999998877654211 13
Q ss_pred EEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcccc---cCHHHHHHHHHhhcCC--C
Q 007645 227 SFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT---AYNATYLIEVDRLLRP--G 295 (595)
Q Consensus 227 ~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~---~d~~~~L~Ei~RvLRP--G 295 (595)
.+.++|+++.+++.|+++ |+ .+.+.+.|+.+++.+ .+||+|+++--+..-. ++...+..++.++||+ |
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g 343 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPT 343 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCC
Confidence 589999999999999876 54 378999999888865 5899999986542211 1223456666667766 9
Q ss_pred cEEEEEcC
Q 007645 296 GYLVISGP 303 (595)
Q Consensus 296 G~lvls~p 303 (595)
|.+++.++
T Consensus 344 ~~~~iit~ 351 (393)
T 3k0b_A 344 WSVYVLTS 351 (393)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEEC
Confidence 99888875
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.7e-07 Score=91.07 Aligned_cols=106 Identities=9% Similarity=0.068 Sum_probs=71.2
Q ss_pred CeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
.-..|||+|||.|+++..|... +. +|+-.|-. ..+..+-++ |+-+-.+-.+..+..++.+||+|.+..+|.
T Consensus 72 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~ 148 (302)
T 3hem_A 72 PGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFE 148 (302)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGG
T ss_pred CcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHH
Confidence 3468999999999999999765 52 45555544 666665554 432211111111122279999999999998
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+..+|......-....+|-|+-|+|||||.+++.+
T Consensus 149 ~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 183 (302)
T 3hem_A 149 HFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 183 (302)
T ss_dssp GTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEE
T ss_pred hcCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 87533221123456789999999999999999963
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.22 E-value=2.9e-06 Score=81.77 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=94.9
Q ss_pred hhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc---
Q 007645 415 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--- 486 (595)
Q Consensus 415 f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--- 486 (595)
|+.-......+.+...+.+.. ..-..|||+|||.|.++.+|.+..- .-+|+-.|-. ..+..+-++ |+
T Consensus 7 ~~~~~~~~~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~ 81 (219)
T 3jwg_A 7 TEKKLNLNQQRLGTVVAVLKS----VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEM 81 (219)
T ss_dssp -----CHHHHHHHHHHHHHHH----TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHH
T ss_pred CCcCCcchHHHHHHHHHHHhh----cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccc
Confidence 333344555666555554431 2236899999999999999976420 1234444433 455554443 11
Q ss_pred -----hhhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChH---------
Q 007645 487 -----IGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE--------- 552 (595)
Q Consensus 487 -----ig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~--------- 552 (595)
-=+..|. +..+.-+.+||+|-+..++.+.. .-.+..+|-|+-|+|||||.+|.....+
T Consensus 82 ~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~ 153 (219)
T 3jwg_A 82 QRKRISLFQSSL-VYRDKRFSGYDAATVIEVIEHLD-------ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLF 153 (219)
T ss_dssp HHTTEEEEECCS-SSCCGGGTTCSEEEEESCGGGCC-------HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-
T ss_pred cCcceEEEeCcc-cccccccCCCCEEEEHHHHHhCC-------HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccC
Confidence 1111222 11221237999999999988653 1234678999999999999888753221
Q ss_pred -------------HHHHHH----HhHhccCceeEEe---ccCCCCCCCceEEEEEec
Q 007645 553 -------------VIDKVS----RIANTVRWTAAVH---DKEPGSNGREKILVATKS 589 (595)
Q Consensus 553 -------------~~~~~~----~~~~~~~W~~~~~---~~~~~~~~~~~~l~~~K~ 589 (595)
.-++++ +++..--+++... +..+.-....+|.|++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 154 EGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp ----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred cccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence 122333 7777777887666 222333346789999986
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=87.20 Aligned_cols=117 Identities=9% Similarity=0.008 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc-------------------------------------eE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL-------------------------------------TL 226 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-------------------------------------~~ 226 (595)
+.+...+..+.....+ ..+||.+||+|.++...+..... ..
T Consensus 180 e~LAaall~l~~~~~~--~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPD--KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHhCCCCC--CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3444555555554443 48999999999998877654211 13
Q ss_pred EEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCCCcccc---cCHHHHHHHHHhhcCC--C
Q 007645 227 SFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT---AYNATYLIEVDRLLRP--G 295 (595)
Q Consensus 227 ~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~---~d~~~~L~Ei~RvLRP--G 295 (595)
.+.++|+++.+++.|+++ |+ .+.+.+.|+.+++.+ .+||+|+++--+..-. .+...+..++.+.||+ |
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g 336 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKT 336 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTT
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCC
Confidence 589999999999999876 54 378899999888865 4899999986542222 1234666777777776 9
Q ss_pred cEEEEEcC
Q 007645 296 GYLVISGP 303 (595)
Q Consensus 296 G~lvls~p 303 (595)
|.+++.++
T Consensus 337 ~~~~iit~ 344 (384)
T 3ldg_A 337 WSQFILTN 344 (384)
T ss_dssp SEEEEEES
T ss_pred cEEEEEEC
Confidence 99988876
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-06 Score=85.31 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.+.+.+....+. +|||||||+|.++..|++++ ..++++|+++.+++.++++. .++.+..+|+..+++
T Consensus 15 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTD--TLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCH
Confidence 34566777777665544 89999999999999999985 37889999999999998873 468899999988876
Q ss_pred CC----CceeEEEEcC
Q 007645 261 PA----FSFDIVHCSR 272 (595)
Q Consensus 261 pd----~sFDlV~~s~ 272 (595)
++ +.|| |+++.
T Consensus 90 ~~~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGNL 104 (255)
T ss_dssp GGSCCSSCEE-EEEEC
T ss_pred HHhccCCCeE-EEecC
Confidence 53 5688 66654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-06 Score=88.85 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=69.7
Q ss_pred cceEEEECCCCcHHHHHHhhc----------------CCceEEEEeecCc-----------HHHHHHHHH-cC--CCeEE
Q 007645 201 LRTALDMGCGVASFGGSMLSE----------------NILTLSFAPRDSH-----------KAQIQFALE-RG--IPAFV 250 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~----------------gv~~~~v~~vD~s-----------~~~l~~A~e-rg--~~~~~ 250 (595)
.-+|+|+||++|..+..+.+. ......+...|+- +...+.+++ .| .+..|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999888877655 1234667777765 333333333 23 23455
Q ss_pred EEccc---ccCCCCCCceeEEEEcCCCcccccCHH---------------------------------------HHHHHH
Q 007645 251 AMLGT---RRLPFPAFSFDIVHCSRCLIPFTAYNA---------------------------------------TYLIEV 288 (595)
Q Consensus 251 ~~~d~---~~LPfpd~sFDlV~~s~vL~h~~~d~~---------------------------------------~~L~Ei 288 (595)
+.+.. ..-.||+++||+|+++.+| ||..+.. .+|+..
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55432 3346899999999999999 8863321 125556
Q ss_pred HhhcCCCcEEEEEcCC
Q 007645 289 DRLLRPGGYLVISGPP 304 (595)
Q Consensus 289 ~RvLRPGG~lvls~p~ 304 (595)
.+.|+|||+++++...
T Consensus 212 a~eL~pGG~mvl~~~g 227 (384)
T 2efj_A 212 SEELISRGRMLLTFIC 227 (384)
T ss_dssp HHHEEEEEEEEEEEEC
T ss_pred HHHhccCCeEEEEEec
Confidence 8999999999998763
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.9e-06 Score=86.50 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=65.2
Q ss_pred cceEEEECCCCcHHHHHHhhc--------------CCceEEEEeecCcHHHHHHHHH-----------------cCCCeE
Q 007645 201 LRTALDMGCGVASFGGSMLSE--------------NILTLSFAPRDSHKAQIQFALE-----------------RGIPAF 249 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~--------------gv~~~~v~~vD~s~~~l~~A~e-----------------rg~~~~ 249 (595)
..+|+|+|||+|..+..+.+. ......+.-.|+-.+.....-+ .+.+..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999888876322 1123455555644433211100 000112
Q ss_pred EE--Ecc-cccCCCCCCceeEEEEcCCCccccc--------------------------------------CHHHHHHHH
Q 007645 250 VA--MLG-TRRLPFPAFSFDIVHCSRCLIPFTA--------------------------------------YNATYLIEV 288 (595)
Q Consensus 250 ~~--~~d-~~~LPfpd~sFDlV~~s~vL~h~~~--------------------------------------d~~~~L~Ei 288 (595)
+. +.+ ...-.||+++||+|+|+.+| ||.. |...+|+..
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222 23335889999999999999 8863 223468889
Q ss_pred HhhcCCCcEEEEEcC
Q 007645 289 DRLLRPGGYLVISGP 303 (595)
Q Consensus 289 ~RvLRPGG~lvls~p 303 (595)
.+.|+|||.++++..
T Consensus 212 a~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHhCCCCEEEEEEe
Confidence 999999999999876
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-06 Score=83.02 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=75.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccc--hh-hhcccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IG-VYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig-~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-+ .|+ +- ...|..+ ++. +.+||+|.+..++.
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~-~~~~D~v~~~~~l~ 108 (199)
T 2xvm_A 34 GKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN-LTF-DRQYDFILSTVVLM 108 (199)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG-CCC-CCCEEEEEEESCGG
T ss_pred CeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh-CCC-CCCceEEEEcchhh
Confidence 5899999999999999977643 44545543 44444333 233 11 1222222 222 68999999998887
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC--------------hHHHHHHHHhHhccCceeEEec
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------------PEVIDKVSRIANTVRWTAAVHD 572 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~--------------~~~~~~~~~~~~~~~W~~~~~~ 572 (595)
+. ..-....+|-++-|+|+|||.+++-+. .--.++++++... |+.....
T Consensus 109 ~~-------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 109 FL-------EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp GS-------CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred hC-------CHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 54 223567899999999999999877421 0124567777776 8876653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.5e-06 Score=84.84 Aligned_cols=108 Identities=8% Similarity=-0.106 Sum_probs=73.8
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCCCCC---Cce
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLPFPA---FSF 265 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LPfpd---~sF 265 (595)
+....+. +|||+|||+|..+..|++.--....++++|+++.+++.++++ |+ ++.+...|...++... ++|
T Consensus 98 l~~~~g~--~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~f 175 (309)
T 2b9e_A 98 LDPPPGS--HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 175 (309)
T ss_dssp HCCCTTC--EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred hCCCCCC--EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCC
Confidence 3334444 899999999999999987511224788999999999988765 54 5788888887765432 579
Q ss_pred eEEEEc------CCCcc-----c----c-cCH-------HHHHHHHHhhcCCCcEEEEEcCC
Q 007645 266 DIVHCS------RCLIP-----F----T-AYN-------ATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 266 DlV~~s------~vL~h-----~----~-~d~-------~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
|.|++. .++.. | . ++. ..+|..+.++|+ ||++++++-.
T Consensus 176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 999972 11111 1 1 111 245777888887 9999998753
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.4e-05 Score=84.54 Aligned_cols=105 Identities=8% Similarity=0.096 Sum_probs=73.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
...+.+.+.+... + .+|||+|||+|.++..|++.. ..+.++|+++.+++.|+++ ++ ++.+..+|+..+.
T Consensus 201 ~l~~~~~~~~~~~-~--~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~ 274 (369)
T 3bt7_A 201 QMLEWALDVTKGS-K--GDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFT 274 (369)
T ss_dssp HHHHHHHHHTTTC-C--SEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHH
T ss_pred HHHHHHHHHhhcC-C--CEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHH
Confidence 3445555555433 2 479999999999999998753 3788999999999988765 44 5788888765431
Q ss_pred --CCC--------------CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 --FPA--------------FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 --fpd--------------~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+ .+||+|++.--.. .+..++.+.|+++|.++++.
T Consensus 275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 275 QAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp HHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEE
T ss_pred HHHhhccccccccccccccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEE
Confidence 121 3799999753221 13456777788888888875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-06 Score=88.44 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=67.7
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
-.+|||+|||.|.++..|... .. +|+-.|-. ..+..+-++ |+-....-.+..+..+|.+||+|.+..+|.+
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~ 167 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH 167 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred cCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence 358999999999999988754 33 44545543 666665554 4422122122233345789999999998876
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.. .-....+|-|+-|+|+|||.+++.+
T Consensus 168 ~~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 194 (318)
T 2fk8_A 168 FG-------HENYDDFFKRCFNIMPADGRMTVQS 194 (318)
T ss_dssp TC-------GGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred cC-------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 52 2356789999999999999999863
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.2e-06 Score=86.37 Aligned_cols=147 Identities=15% Similarity=0.171 Sum_probs=91.8
Q ss_pred HHHHhhhccCCCCeeeEEecccchhHHHhhhc--CCCeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCC
Q 007645 429 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPF 497 (595)
Q Consensus 429 y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~--~~~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f 497 (595)
+.+.+...+..+ ..|||+|||.|.++.+|. ..+- .+|+-.|-. ..+..+-++ |+-. +..|..+ +
T Consensus 108 ~~~~l~~~l~~~--~~vLDiGcG~G~~~~~la~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 182 (305)
T 3ocj_A 108 FRRALQRHLRPG--CVVASVPCGWMSELLALDYSACPG--VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK-L 182 (305)
T ss_dssp HHHHHHHHCCTT--CEEEETTCTTCHHHHTSCCTTCTT--CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG-C
T ss_pred HHHHHHhhCCCC--CEEEEecCCCCHHHHHHHHhcCCC--CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc-C
Confidence 334333334444 579999999999999983 3332 234444433 455544433 3321 1122222 2
Q ss_pred CCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh--------------------------
Q 007645 498 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------------------- 551 (595)
Q Consensus 498 ~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-------------------------- 551 (595)
+ +|.+||+|.+..++.++. +.-....+|-|+-|+|||||.+++.+-.
T Consensus 183 ~-~~~~fD~v~~~~~~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 255 (305)
T 3ocj_A 183 D-TREGYDLLTSNGLNIYEP------DDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQL 255 (305)
T ss_dssp C-CCSCEEEEECCSSGGGCC------CHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHH
T ss_pred C-ccCCeEEEEECChhhhcC------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhh
Confidence 1 458999999988887664 2223335799999999999999997611
Q ss_pred -------------HHHHHHHHhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 552 -------------EVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 552 -------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
...++++++++.--++....... ....-.+++++|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~--~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 256 VFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDD--RARLFPTVIARKP 304 (305)
T ss_dssp HHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECC--TTSSSCEEEEECC
T ss_pred HHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcc--cCceeeEEEEecC
Confidence 12667888888888887655432 2234468889986
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.4e-05 Score=85.20 Aligned_cols=301 Identities=17% Similarity=0.182 Sum_probs=151.2
Q ss_pred eecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeE
Q 007645 170 FTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAF 249 (595)
Q Consensus 170 ~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~ 249 (595)
|.-||... |...+++|+ .+.+... ..+||+++-+.|..+..+... . .+..+.-|....+..+.+|....
T Consensus 22 ~~~~~~~~-~~~~~~~~l---~~~~~~~---~~~~l~~n~~~g~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~ 90 (381)
T 3dmg_A 22 FIKPGARG-YRDPVHDLL---QKTVEPF---GERALDLNPGVGWGSLPLEGR-M---AVERLETSRAAFRCLTASGLQAR 90 (381)
T ss_dssp EECTTCSS-SSCHHHHHH---HTTCCCC---SSEEEESSCTTSTTTGGGBTT-B---EEEEEECBHHHHHHHHHTTCCCE
T ss_pred eecCCCCC-CCChHHHHH---HHHHHHh---CCcEEEecCCCCccccccCCC-C---ceEEEeCcHHHHHHHHHcCCCcc
Confidence 34444433 334445443 3344332 237999999999877766533 1 22223334444444555677653
Q ss_pred EEEcccccCCCCCCceeEEEEcCCCccccc-----CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHH-H
Q 007645 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTA-----YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVAR-A 323 (595)
Q Consensus 250 ~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~-----d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~-~ 323 (595)
. ... ...+...||+|+.. ++. .....|.++.+.|+|||.+++.+. .....+.+...++ .
T Consensus 91 ~-~~~---~~~~~~~~d~v~~~-----~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~------~~~g~~~~~~~~~~~ 155 (381)
T 3dmg_A 91 L-ALP---WEAAAGAYDLVVLA-----LPAGRGTAYVQASLVAAARALRMGGRLYLAGD------KNKGFERYFKEARAL 155 (381)
T ss_dssp E-CCG---GGSCTTCEEEEEEE-----CCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEE------GGGTHHHHHHHHHHH
T ss_pred c-cCC---ccCCcCCCCEEEEE-----CCcchhHHHHHHHHHHHHHhCCCCCEEEEEEc------cHHHHHHHHHHHHhh
Confidence 3 111 11234679999853 331 235778889999999999999874 1223445444443 4
Q ss_pred cCcEEEEeecceeEeeccCCcccccccCCCCCCCCCCCCCCCCcccccccccccCCccccccccCCCCCCCCcccCCCCc
Q 007645 324 LCYELIAVDGNTVIWKKPVGESCLSNQNEFGLELCDESDDPNYAWYFKLKKCVSGTSSVKGEYAVGTIPKWPQRLTKAPS 403 (595)
Q Consensus 324 ~~w~~v~~~~~~~iw~K~~~~~c~~~~~~~~~p~C~~~~~~~~~wy~~l~~c~~~~~~~~~~~~~~~~~~wp~rl~~~p~ 403 (595)
+.+....+... ...|.........| .....| ......+. -.
T Consensus 156 ~~~~~~~~~~~--------~~r~~~~~~~~~~p------~~~~~w-~~~~~~~~------------------------g~ 196 (381)
T 3dmg_A 156 LGYGVVVRREG--------PYRVALLEKEKEAP------PLPSLW-RAFSARIL------------------------GA 196 (381)
T ss_dssp HSCEEEEEEET--------TEEEEEEECCSCCC------CCCCCC-EEEEEEET------------------------TE
T ss_pred hcccccccccc--------CcEEEEEEccCCCC------CCcccc-ceeeEEec------------------------Cc
Confidence 56654443321 11121110000011 011112 11111110 00
Q ss_pred cccccccChhhhh-----hhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-Cc
Q 007645 404 RALVMKNGYDVFE-----ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-ST 477 (595)
Q Consensus 404 ~~~~~~~~~~~f~-----~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~ 477 (595)
.+ .....+..|. ..++...+.+..+.. . ....=.+|+|+|||.|.++.+|..... .|+-.|.. ..
T Consensus 197 ~~-~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~---~--~~~~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~a 267 (381)
T 3dmg_A 197 EY-TFHHLPGVFSAGKVDPASLLLLEALQERLG---P--EGVRGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLAS 267 (381)
T ss_dssp EE-EEEECTTCTTTTSCCHHHHHHHHHHHHHHC---T--TTTTTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHH
T ss_pred eE-EEEeCCCceeCCCCCHHHHHHHHHHHHhhc---c--cCCCCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHH
Confidence 00 0111222333 233333333332211 0 111225899999999999999977653 44545543 44
Q ss_pred hhHHhh----ccc-hhhhcccCCCCCC-CC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 478 LSVIYD----RGL-IGVYHDWCEPFST-YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 478 l~~i~e----RGl-ig~~~~wce~f~t-yp-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
+..+-+ .|+ +-.++ +..+.. .+ .+||+|-++-.|..-. ....-....++-++-|+|+|||.+++.-+
T Consensus 268 l~~A~~n~~~~~~~v~~~~--~D~~~~~~~~~~fD~Ii~npp~~~~~----~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 268 VLSLQKGLEANALKAQALH--SDVDEALTEEARFDIIVTNPPFHVGG----AVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp HHHHHHHHHHTTCCCEEEE--CSTTTTSCTTCCEEEEEECCCCCTTC----SSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEE--cchhhccccCCCeEEEEECCchhhcc----cccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 443332 222 11121 112221 23 6999999988776321 01122345788999999999999999643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.7e-06 Score=80.87 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=85.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCCCCCCCCccchhhccCccccccCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNP 519 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~f~typrtyDl~H~~~~~s~~~~~ 519 (595)
..|||+|||.|.++..|..... +|+-.|-. ..+..+-++. +--+..|.. .++.-+.+||+|.+..++.++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~~--- 115 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASLGH---QIEGLEPATRLVELARQTHPSVTFHHGTIT-DLSDSPKRWAGLLAWYSLIHM--- 115 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHTTC---CEEEECCCHHHHHHHHHHCTTSEEECCCGG-GGGGSCCCEEEEEEESSSTTC---
T ss_pred CeEEEecCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHhCCCCeEEeCccc-ccccCCCCeEEEEehhhHhcC---
Confidence 5799999999999999977643 44445544 5666666653 111111221 122223899999999888765
Q ss_pred CCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------------HHHHHHHHhHhccCceeEEeccCCC
Q 007645 520 GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVHDKEPG 576 (595)
Q Consensus 520 ~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~~~W~~~~~~~~~~ 576 (595)
..-....+|-|+-|+|+|||.+++.+.. .-.+++++++...-|++.......+
T Consensus 116 ----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 116 ----GPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp ----CTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred ----CHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 2346778999999999999999997411 1267888899999999877755544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.1e-06 Score=83.84 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH---cCCCeEEEEccccc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE---RGIPAFVAMLGTRR 257 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e---rg~~~~~~~~d~~~ 257 (595)
+.+.+++ ++.+......+ .+|||+|||+|.|+.+++++. .+..+.++|++..+...+.. .+.++.....+++.
T Consensus 58 RaA~KL~-ei~ek~~l~~~--~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv 133 (277)
T 3evf_A 58 RGTAKLR-WFHERGYVKLE--GRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDI 133 (277)
T ss_dssp THHHHHH-HHHHTTSSCCC--EEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCT
T ss_pred cHHHHHH-HHHHhCCCCCC--CEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccccCcCCCCeEEEecccee
Confidence 3344444 44444444443 389999999999999887762 23355566665322100111 12244555555555
Q ss_pred CCCCCCceeEEEEcCCCc---ccccCHH--HHHHHHHhhcCCC-cEEEEEc
Q 007645 258 LPFPAFSFDIVHCSRCLI---PFTAYNA--TYLIEVDRLLRPG-GYLVISG 302 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~---h~~~d~~--~~L~Ei~RvLRPG-G~lvls~ 302 (595)
..++.+.||+|+|..+.. ++.+... .+|..+.++|+|| |.|++..
T Consensus 134 ~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV 184 (277)
T ss_dssp TTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred hhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 667788999999976553 2332211 3468889999999 9999976
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.09 E-value=3.8e-06 Score=88.81 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=72.9
Q ss_pred CcceEEEECCCCcHHHHHHhhc---------------CCceEEEEeecCcHHHHHHHHHcCC------CeEEEEcc---c
Q 007645 200 TLRTALDMGCGVASFGGSMLSE---------------NILTLSFAPRDSHKAQIQFALERGI------PAFVAMLG---T 255 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~---------------gv~~~~v~~vD~s~~~l~~A~erg~------~~~~~~~d---~ 255 (595)
..-+|+|+||++|..+..+.+. ......+...|...+......+.-. +..|..+. .
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4457999999999777766554 2445677778877666655543321 22444432 3
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCH---------------------------------HHHHHHHHhhcCCCcEEEEEc
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYN---------------------------------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~---------------------------------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
....||++++|+|+|+.+| ||..+. ..+|+...+.|+|||.++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3457899999999999999 886321 234888899999999999987
Q ss_pred C
Q 007645 303 P 303 (595)
Q Consensus 303 p 303 (595)
.
T Consensus 210 ~ 210 (359)
T 1m6e_X 210 L 210 (359)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-06 Score=82.56 Aligned_cols=92 Identities=21% Similarity=0.349 Sum_probs=63.7
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc---cchhhhcccCCCCCCCCCccchhhccCccccccCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR---GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNP 519 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR---Glig~~~~wce~f~typrtyDl~H~~~~~s~~~~~ 519 (595)
.|||+|||.|.++..|.+.-- +|+-.|-. ..+..+-++ ++--...|..+.+ .+.+||+|++.+++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~-- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQ--LPRRYDNIVLTHVLEHID-- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCC--CSSCEEEEEEESCGGGCS--
T ss_pred cEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcC--cCCcccEEEEhhHHHhhc--
Confidence 599999999999999976532 34444433 555555544 2211112222222 248999999999988764
Q ss_pred CCCCCCCChhhhHHhhc-ccccCCcEEEEeC
Q 007645 520 GSNKNSCSLVDLMVEMD-RMLRPEGTVVVRD 549 (595)
Q Consensus 520 ~~~~~~c~~~~~llEmd-RiLRP~G~~i~rd 549 (595)
+...+|-|+- |+|+|||.+++.+
T Consensus 118 -------~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 118 -------DPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp -------SHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred -------CHHHHHHHHHHHhcCCCCEEEEEc
Confidence 3468999999 9999999999974
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.4e-06 Score=82.09 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=73.6
Q ss_pred HHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc----hhhhcccCCCCCCCCCccc
Q 007645 431 NTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IGVYHDWCEPFSTYPRTYD 505 (595)
Q Consensus 431 ~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig~~~~wce~f~typrtyD 505 (595)
..+...+....-.+|||+|||.|.++..|.... -+|+-.|-. ..+..+-++.- +-.++.=.+.++ -+.+||
T Consensus 41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~fD 116 (216)
T 3ofk_A 41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS-TAELFD 116 (216)
T ss_dssp HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC-CSCCEE
T ss_pred HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC-CCCCcc
Confidence 333334555667899999999999999998763 366666654 56665555431 111211112222 248999
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+|.+..++.+.. +.-.+..+|-|+-|+|+|||.+++.+
T Consensus 117 ~v~~~~~l~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 117 LIVVAEVLYYLE------DMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp EEEEESCGGGSS------SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEccHHHhCC------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 999998888664 22334567999999999999999953
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.6e-07 Score=87.84 Aligned_cols=94 Identities=14% Similarity=0.219 Sum_probs=66.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhh-cccCCCCCCCC-CccchhhccCccccccCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVY-HDWCEPFSTYP-RTYDLIHVSGIESLIKNP 519 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~-~~wce~f~typ-rtyDl~H~~~~~s~~~~~ 519 (595)
.+|||+|||.|.|+.+|..... +|+-.|-. ..+..+-++ +-.+ .|-.+....+| .+||+|.+..++.+..
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~-- 115 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEEGI---ESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLD-- 115 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHHTC---CEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSC--
T ss_pred CeEEEEeCCCCHHHHHHHhCCC---cEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCC--
Confidence 6899999999999999876543 34444543 667776666 2111 11111111344 8999999999888652
Q ss_pred CCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 520 GSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 520 ~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.-.+..+|-|+-|+|+|||.+++.
T Consensus 116 -----~~~~~~~l~~~~~~LkpgG~l~~~ 139 (240)
T 3dli_A 116 -----PERLFELLSLCYSKMKYSSYIVIE 139 (240)
T ss_dssp -----GGGHHHHHHHHHHHBCTTCCEEEE
T ss_pred -----cHHHHHHHHHHHHHcCCCcEEEEE
Confidence 235678999999999999999996
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=6.1e-06 Score=84.02 Aligned_cols=85 Identities=7% Similarity=0.088 Sum_probs=68.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CCeEEEEcccccCCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~LPfp 261 (595)
...++.|.+.+.... . +|||||||+|.++..|++++ ..++++|+++.+++.++++. .++.+..+|+..++++
T Consensus 33 ~~i~~~Iv~~~~~~~--~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~ 106 (271)
T 3fut_A 33 EAHLRRIVEAARPFT--G-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE 106 (271)
T ss_dssp HHHHHHHHHHHCCCC--S-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred HHHHHHHHHhcCCCC--C-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence 355667777766544 3 79999999999999999986 36888999999999998874 3588999999888876
Q ss_pred CC-ceeEEEEcCCC
Q 007645 262 AF-SFDIVHCSRCL 274 (595)
Q Consensus 262 d~-sFDlV~~s~vL 274 (595)
+. .+|.|+++.-.
T Consensus 107 ~~~~~~~iv~NlPy 120 (271)
T 3fut_A 107 EVPQGSLLVANLPY 120 (271)
T ss_dssp GSCTTEEEEEEECS
T ss_pred hccCccEEEecCcc
Confidence 53 68999988644
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-06 Score=82.75 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=67.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccCCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPG 520 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~ 520 (595)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++|+..+-.-.+.....+| .+||+|.+..++.+..
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~--- 121 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD---RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP--- 121 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC---
T ss_pred CeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC---
Confidence 4899999999999999976632 44555543 66666666664222111112222234 8999999999888663
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.-.+..+|-|+-|+|+|||.+++.+
T Consensus 122 ----~~~~~~~l~~~~~~L~pgG~l~~~~ 146 (218)
T 3ou2_A 122 ----DDRFEAFWESVRSAVAPGGVVEFVD 146 (218)
T ss_dssp ----HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 1235789999999999999999974
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-06 Score=93.43 Aligned_cols=147 Identities=14% Similarity=0.098 Sum_probs=103.2
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhh
Q 007645 412 YDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVY 490 (595)
Q Consensus 412 ~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~ 490 (595)
...|...+..|......+.+.+...+....=..|||+|||.|.++..|.+... +|+-.|-. +.+..+-++|+-...
T Consensus 78 y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~---~v~gvD~s~~~~~~a~~~~~~~~~ 154 (416)
T 4e2x_A 78 YPYHSSGSSVMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV---RHLGFEPSSGVAAKAREKGIRVRT 154 (416)
T ss_dssp CCCCGGGCHHHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC---EEEEECCCHHHHHHHHTTTCCEEC
T ss_pred ccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC---cEEEECCCHHHHHHHHHcCCCcce
Confidence 33455666788888888777665555544456899999999999999987654 56666655 788888888653322
Q ss_pred cccCC----CCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh--------------
Q 007645 491 HDWCE----PFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------- 551 (595)
Q Consensus 491 ~~wce----~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-------------- 551 (595)
..+.. .++ ++ .+||+|.+.++|.++. +...+|-|+-|+|+|||.+++....
T Consensus 155 ~~~~~~~~~~l~-~~~~~fD~I~~~~vl~h~~---------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 224 (416)
T 4e2x_A 155 DFFEKATADDVR-RTEGPANVIYAANTLCHIP---------YVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIF 224 (416)
T ss_dssp SCCSHHHHHHHH-HHHCCEEEEEEESCGGGCT---------THHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCS
T ss_pred eeechhhHhhcc-cCCCCEEEEEECChHHhcC---------CHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhh
Confidence 11110 011 33 8999999999998763 5788999999999999999997321
Q ss_pred ------HHHHHHHHhHhccCceeEEe
Q 007645 552 ------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 552 ------~~~~~~~~~~~~~~W~~~~~ 571 (595)
.-.+.+++++++--+++...
T Consensus 225 ~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 225 DEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp TTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred hhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 01356777777777766544
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-06 Score=87.54 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=62.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccCCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPG 520 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~ 520 (595)
.+|||+|||.|.++..|...-- +|+-.|-. ..|..+-++.=|-..+.=.|.++ +| .+||+|.+..+| +|
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~---~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~-~~~~sfD~v~~~~~~-h~---- 111 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE---RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTG-LPPASVDVAIAAQAM-HW---- 111 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS---EEEEEESCHHHHHTCCCCTTEEEEECCTTCCC-CCSSCEEEEEECSCC-TT----
T ss_pred CCEEEEcCCCCHHHHHHHHhCC---EEEEEeCcHHhhhhhhhcCCceeehhhhhhhc-ccCCcccEEEEeeeh-hH----
Confidence 4799999999999999977532 34444433 45554443321222222223333 44 899999999888 55
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+.+..+-|+-|+|||||.+++-
T Consensus 112 -----~~~~~~~~e~~rvLkpgG~l~~~ 134 (257)
T 4hg2_A 112 -----FDLDRFWAELRRVARPGAVFAAV 134 (257)
T ss_dssp -----CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----hhHHHHHHHHHHHcCCCCEEEEE
Confidence 34677999999999999999874
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=8.7e-06 Score=86.67 Aligned_cols=95 Identities=14% Similarity=0.078 Sum_probs=71.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-------------------CCC-eEEEEcccccCCC-
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-------------------GIP-AFVAMLGTRRLPF- 260 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-------------------g~~-~~~~~~d~~~LPf- 260 (595)
.+|||+|||+|.++..++.+. ....++++|+++.+++.++++ ++. +.+...|+..+..
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~-~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALET-PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHS-SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEECCCchhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 489999999999999999872 123688999999999988754 444 6777777654421
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
..+.||+|++.- . . ....++..+.+.|||||.++++.
T Consensus 128 ~~~~fD~I~lDP-~---~-~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLDP-F---G-SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEECC-S---S-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeCC-C---C-CHHHHHHHHHHhcCCCCEEEEEe
Confidence 135799999542 1 1 34678999999999999988864
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-06 Score=85.80 Aligned_cols=94 Identities=21% Similarity=0.294 Sum_probs=65.9
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchh---h-hcccCCCCCCCC-Cccchhhcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIG---V-YHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig---~-~~~wce~f~typ-rtyDl~H~~ 510 (595)
-.+|||+|||.|.++..|... +. +|+-.|-. ..+..+-+| |+-. . ..|.. .++ +| .+||+|.+.
T Consensus 83 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~ 157 (297)
T 2o57_A 83 QAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIP-CEDNSYDFIWSQ 157 (297)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCS-SCTTCEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcc-cCC-CCCCCEeEEEec
Confidence 358999999999999998764 43 45555543 555555443 4321 1 12222 222 33 799999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++.++. + ...+|-|+-|+|||||.+++.+
T Consensus 158 ~~l~~~~------~---~~~~l~~~~~~LkpgG~l~~~~ 187 (297)
T 2o57_A 158 DAFLHSP------D---KLKVFQECARVLKPRGVMAITD 187 (297)
T ss_dssp SCGGGCS------C---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhhcC------C---HHHHHHHHHHHcCCCeEEEEEE
Confidence 9988764 2 6789999999999999999974
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=7.6e-06 Score=76.71 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=80.7
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc--hhhhcccCCCCCCCC-Cccchhh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--IGVYHDWCEPFSTYP-RTYDLIH 508 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~~wce~f~typ-rtyDl~H 508 (595)
+..+ ..|||+|||.|.++..|.+.. -.|+-.|-. ..+..+-++ |+ +-..++-.+.+..++ .+||+|.
T Consensus 20 ~~~~--~~vLDiGcG~G~~~~~la~~~---~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~ 94 (185)
T 3mti_A 20 LDDE--SIVVDATMGNGNDTAFLAGLS---KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAI 94 (185)
T ss_dssp CCTT--CEEEESCCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEE
T ss_pred CCCC--CEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEE
Confidence 4444 479999999999999998763 344555543 555544333 44 223333333433344 7899996
Q ss_pred cc-CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC------hHHHHHHHHhHhccC---ceeEEeccCCCCC
Q 007645 509 VS-GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------PEVIDKVSRIANTVR---WTAAVHDKEPGSN 578 (595)
Q Consensus 509 ~~-~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~------~~~~~~~~~~~~~~~---W~~~~~~~~~~~~ 578 (595)
++ +.+..-. .......-.....|-|+-|+|||||.+++..- .+..+.+.+.+..+. |.+.....-+...
T Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 173 (185)
T 3mti_A 95 FNLGYLPSAD-KSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQIN 173 (185)
T ss_dssp EEEC------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEEEESSCSS
T ss_pred EeCCCCCCcc-hhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEehhhccCC
Confidence 55 2211100 00000111223577899999999999998532 223445555555554 7765554444333
Q ss_pred CCceEEEEEe
Q 007645 579 GREKILVATK 588 (595)
Q Consensus 579 ~~~~~l~~~K 588 (595)
....+++..|
T Consensus 174 ~~~~~~~i~~ 183 (185)
T 3mti_A 174 TPPFLVMLEK 183 (185)
T ss_dssp CCCEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 4455666555
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.9e-06 Score=91.38 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=83.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc---CC--------------ceEEEEeecCcHHHHHHHHHc---
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE---NI--------------LTLSFAPRDSHKAQIQFALER--- 244 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~---gv--------------~~~~v~~vD~s~~~l~~A~er--- 244 (595)
..++.+.+.+....+ .+|||.+||+|.|+..+++. .. ....+.|+|+++.+++.|+.+
T Consensus 156 ~iv~~mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l 233 (541)
T 2ar0_A 156 PLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 233 (541)
T ss_dssp HHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence 345555666554443 48999999999998877654 11 123689999999999999865
Q ss_pred -CCC------eEEEEcccccCC-CCCCceeEEEEcCCCccccc------------C-HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 245 -GIP------AFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFTA------------Y-NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 245 -g~~------~~~~~~d~~~LP-fpd~sFDlV~~s~vL~h~~~------------d-~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.. ..+..+|+...+ .+...||+|+++-.+..... + .-.++..+.+.|||||+++++.|
T Consensus 234 ~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 234 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 443 567777754432 34578999999876543211 1 23789999999999999999987
Q ss_pred C
Q 007645 304 P 304 (595)
Q Consensus 304 ~ 304 (595)
.
T Consensus 314 ~ 314 (541)
T 2ar0_A 314 D 314 (541)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=77.39 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=63.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hhh-hcccCCCCCCCCCccchhhccC-ccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGV-YHDWCEPFSTYPRTYDLIHVSG-IES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~-~~~wce~f~typrtyDl~H~~~-~~s 514 (595)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ |+ +-. ..|.. .++ +|.+||+|.+.. ++.
T Consensus 39 ~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS-NLN-INRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG-GCC-CSCCEEEEEECTTGGG
T ss_pred CeEEEeCCCCCHHHHHHHHCCC---cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc-cCC-ccCCceEEEEcCcccc
Confidence 5899999999999999987643 44555543 555554443 21 111 11211 121 347999999988 887
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+.. +.-....+|-|+-|+|+|||.+++
T Consensus 114 ~~~------~~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 114 YII------DSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp GCC------SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccC------CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 653 223466899999999999999998
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=84.14 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=73.7
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC---eEEEEcccccC-C-CCCCceeEEEEcC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP---AFVAMLGTRRL-P-FPAFSFDIVHCSR 272 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~---~~~~~~d~~~L-P-fpd~sFDlV~~s~ 272 (595)
.+|||++||+|.++..++.+.--+..++++|+++.+++.++++ ++. +.+...|+..+ . ...+.||+|++.-
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lDP 133 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDP 133 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEECC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEECC
Confidence 4899999999999999998522235788999999999988865 553 67777776443 1 1246799999864
Q ss_pred CCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 273 CLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 273 vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ .....++..+.+.|+|||.++++..
T Consensus 134 ----~-g~~~~~l~~a~~~Lk~gGll~~t~t 159 (392)
T 3axs_A 134 ----F-GTPVPFIESVALSMKRGGILSLTAT 159 (392)
T ss_dssp ----S-SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----C-cCHHHHHHHHHHHhCCCCEEEEEec
Confidence 1 1335689999999999998888653
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.98 E-value=7.1e-06 Score=78.08 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=66.0
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCC-CccchhhccCcc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
+|||+|||.|.++..|...+- .+|+-.|-. ..+..+-++ |+-. ...|.. .++ +| .+||+|.+..++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH-NIP-IEDNYADLIVSRGSV 121 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSE--EEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTT-BCS-SCTTCEEEEEEESCG
T ss_pred EEEEECCCCCHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHH-HCC-CCcccccEEEECchH
Confidence 899999999999999977632 355555543 556555554 4321 122222 222 34 899999999988
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++. +...+|-|+-|+|+|||.+++.+
T Consensus 122 ~~~~---------~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 122 FFWE---------DVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp GGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcc---------CHHHHHHHHHHhCCCCCEEEEEe
Confidence 7653 45679999999999999999974
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-06 Score=82.29 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=78.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchh----hhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIG----VYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig----~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.+|||+|||.|.++.+|..... +|+-.|-. ..+..+-+++... +..|. +.++.-+.+||+|.+..++.+..
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRTGY---KAVGVDISEVMIQKGKERGEGPDLSFIKGDL-SSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHTTTCBTTEEEEECBT-TBCSSCTTCEEEEEEESCTTSSS
T ss_pred CeEEEEcCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhcccCCceEEEcch-hcCCCCCCCccEEEEcChHhhcc
Confidence 4899999999999999987743 45555544 6677777664211 11121 12222138999999998888653
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------------------HHHHHHHHhHhccCceeEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------------------~~~~~~~~~~~~~~W~~~~~ 571 (595)
+...+|-|+-|+|+|||.+++.+.. ....++++++..--++....
T Consensus 131 ---------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 131 ---------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp ---------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ---------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 4467999999999999999997410 11246777777777776543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.97 E-value=8.6e-06 Score=83.20 Aligned_cols=87 Identities=13% Similarity=0.111 Sum_probs=65.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCc-eEEEEeecCcHHHHHHHHHc-CCCeEEEEcccccCCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENIL-TLSFAPRDSHKAQIQFALER-GIPAFVAMLGTRRLPFP 261 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~-~~~v~~vD~s~~~l~~A~er-g~~~~~~~~d~~~LPfp 261 (595)
...++.+.+.+....+. +|||||||+|.++..|++++.. ...++++|+++.+++.++++ ..++.+..+|+..++++
T Consensus 28 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34566777777665544 8999999999999999987432 12388899999999999887 44688999999888865
Q ss_pred CC------ceeEEEEcC
Q 007645 262 AF------SFDIVHCSR 272 (595)
Q Consensus 262 d~------sFDlV~~s~ 272 (595)
+- ..+.|+++.
T Consensus 106 ~~~~~~~~~~~~vv~Nl 122 (279)
T 3uzu_A 106 SIARPGDEPSLRIIGNL 122 (279)
T ss_dssp GGSCSSSSCCEEEEEEC
T ss_pred HhcccccCCceEEEEcc
Confidence 32 234566653
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.1e-07 Score=90.50 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=68.0
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----chhhh-------cccCCCCC--CCC-Cccch
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIGVY-------HDWCEPFS--TYP-RTYDL 506 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~-------~~wce~f~--typ-rtyDl 506 (595)
-.+|||+|||.|.++..|.+... +|+-.|-. ..+..+-++. .-..+ .|+.+ ++ -+| .+||+
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~fD~ 133 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT-LDKDVPAGDGFDA 133 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG-HHHHSCCTTCEEE
T ss_pred CCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh-CccccccCCCeEE
Confidence 36899999999999999987754 66777655 6676665432 11111 11111 11 033 89999
Q ss_pred hhcc-CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 507 IHVS-GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 507 ~H~~-~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|++. .++.+..+ ...+.-....+|-|+-|+|+|||++++..
T Consensus 134 V~~~g~~l~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 134 VICLGNSFAHLPD--SKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEECTTCGGGSCC--SSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEcChHHhhcCc--cccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998 67776540 00112346789999999999999999974
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.9e-05 Score=77.86 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=65.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-CCCeEEEEcccccCCCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-GIPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-g~~~~~~~~d~~~LPfpd 262 (595)
...++.+.+.+....+. +|||||||+|.++..|++++ ...++++|+++.+++.++++ ..++.+..+|+..+++++
T Consensus 17 ~~i~~~iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGN--TVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCS 92 (249)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence 45677777777765544 89999999999999999984 24788999999999999887 235788899998888764
Q ss_pred Cc-eeEEEEcC
Q 007645 263 FS-FDIVHCSR 272 (595)
Q Consensus 263 ~s-FDlV~~s~ 272 (595)
.. ...|+++.
T Consensus 93 ~~~~~~vv~Nl 103 (249)
T 3ftd_A 93 LGKELKVVGNL 103 (249)
T ss_dssp SCSSEEEEEEC
T ss_pred ccCCcEEEEEC
Confidence 21 22555554
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.2e-06 Score=84.13 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=80.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----chh-hhcccCCCCCCCC-Cccchhhc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIG-VYHDWCEPFSTYP-RTYDLIHV 509 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig-~~~~wce~f~typ-rtyDl~H~ 509 (595)
+....-.+|||+|||.|.++..|...- .-+|+-.|-. ..+..+-++- -+- ...|..+ ++ +| .+||+|.+
T Consensus 89 l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~-~~~~~fD~v~~ 164 (254)
T 1xtp_A 89 LPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMET-AT-LPPNTYDLIVI 164 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGG-CC-CCSSCEEEEEE
T ss_pred hcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHH-CC-CCCCCeEEEEE
Confidence 333445789999999999999886542 1134444433 5555555442 111 1223222 22 33 79999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------------HHHHHHHHhHhccCceeEEe
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~~~W~~~~~ 571 (595)
..++.++. .-....+|-|+-|+|||||.+++.+.. .-.++++++++.--++....
T Consensus 165 ~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 165 QWTAIYLT-------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp ESCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred cchhhhCC-------HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 99887652 123568999999999999999997631 12367777777777776544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=72.93 Aligned_cols=135 Identities=14% Similarity=0.091 Sum_probs=82.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-hhh-hcccCCCCCCCC-Cccchhhcc-Ccccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IGV-YHDWCEPFSTYP-RTYDLIHVS-GIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig~-~~~wce~f~typ-rtyDl~H~~-~~~s~~~ 517 (595)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++.- +-. ..|..+ ++ +| .+||+|.++ .++.+.
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~-~~-~~~~~~D~i~~~~~~~~~~- 121 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFPEARWVVGDLSV-DQ-ISETDFDLIVSAGNVMGFL- 121 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSEEEECCTTT-SC-CCCCCEEEEEECCCCGGGS-
T ss_pred CeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCCCCcEEEccccc-CC-CCCCceeEEEECCcHHhhc-
Confidence 5899999999999999977643 44444443 44444444320 111 122222 12 33 789999988 565543
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh---HHHHHHHHhHhccCceeEEeccC--CCC---CCCceEEEEEec
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---EVIDKVSRIANTVRWTAAVHDKE--PGS---NGREKILVATKS 589 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~---~~~~~~~~~~~~~~W~~~~~~~~--~~~---~~~~~~l~~~K~ 589 (595)
..-....+|-++-|+|+|||.+++.... ...+++.+++...-+++...... ..+ ...--++|++|+
T Consensus 122 ------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~v~~k~ 195 (195)
T 3cgg_A 122 ------AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESWDLKPFVQGSEFLVAVFTKK 195 (195)
T ss_dssp ------CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESSTTCCBCCTTCSEEEEEEEEC
T ss_pred ------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecccccCcCCCCCcEEEEEEecC
Confidence 1123467899999999999999996322 23567777777777776554221 111 223346777774
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-06 Score=84.47 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc----cchh--hh-
Q 007645 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GLIG--VY- 490 (595)
Q Consensus 421 ~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~- 490 (595)
.+......+.+.+........=.+|||+|||.|.++..|... .. +|+-.|-. ..+..+-++ |+-. ..
T Consensus 17 ~~~~~~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~ 93 (276)
T 3mgg_A 17 RLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDA---EITSIDISPESLEKARENTEKNGIKNVKFLQ 93 (276)
T ss_dssp ------CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred hHHHHHHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence 333333444444443332233468999999999999998654 22 33333433 455544443 3311 11
Q ss_pred cccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 491 HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 491 ~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.|.. .++.-+.+||+|++..++.+.. +...+|-|+-|+|||||++++.+
T Consensus 94 ~d~~-~~~~~~~~fD~v~~~~~l~~~~---------~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 94 ANIF-SLPFEDSSFDHIFVCFVLEHLQ---------SPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp CCGG-GCCSCTTCEEEEEEESCGGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-cCCCCCCCeeEEEEechhhhcC---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 1222 2222238999999999988663 34689999999999999999964
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.8e-06 Score=82.26 Aligned_cols=95 Identities=23% Similarity=0.330 Sum_probs=64.8
Q ss_pred CeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchhh----hcccCCCCCCCC-Cccchhhc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIGV----YHDWCEPFSTYP-RTYDLIHV 509 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~----~~~wce~f~typ-rtyDl~H~ 509 (595)
.-.+|||+|||.|.++..|... . .+|+-.|-. ..+..+-++ |+-.- ..|..+ ++ +| .+||+|.+
T Consensus 61 ~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~fD~v~~ 135 (273)
T 3bus_A 61 SGDRVLDVGCGIGKPAVRLATARD---VRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD-LP-FEDASFDAVWA 135 (273)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHSC---CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-SCTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc-CC-CCCCCccEEEE
Confidence 3468999999999999988653 3 244444443 555554443 44221 122222 22 34 79999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..++.+.. +...+|-|+-|+|+|||.+++.+
T Consensus 136 ~~~l~~~~---------~~~~~l~~~~~~L~pgG~l~i~~ 166 (273)
T 3bus_A 136 LESLHHMP---------DRGRALREMARVLRPGGTVAIAD 166 (273)
T ss_dssp ESCTTTSS---------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred echhhhCC---------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 99888653 34789999999999999999974
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.89 E-value=5.6e-06 Score=79.41 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=67.9
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccC
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKN 518 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~ 518 (595)
.-.+|||+|||.|.++.+|...+ .+|+-.|-. ..+..+-++.---...|..+....+| .+||+|.+..++.+..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~- 107 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENG---TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFGDVLEHLF- 107 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTT---CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEESCGGGSS-
T ss_pred CCCcEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEECChhhhcC-
Confidence 34689999999999999998876 355555544 55555555432111223222112344 8999999999888663
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+...+|-|+-|+|+|||.+++..
T Consensus 108 --------~~~~~l~~~~~~L~~gG~l~~~~ 130 (230)
T 3cc8_A 108 --------DPWAVIEKVKPYIKQNGVILASI 130 (230)
T ss_dssp --------CHHHHHHHTGGGEEEEEEEEEEE
T ss_pred --------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689999999999999999963
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=5e-05 Score=73.94 Aligned_cols=119 Identities=17% Similarity=0.091 Sum_probs=80.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCC--CCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTY--PRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~ty--prtyDl~H~~~~~s~ 515 (595)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ |+..-+.-.+.-+..+ +.+||+|.+..++.+
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 4899999999999999987543 34555543 555555444 2222222222222222 269999999988876
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-----------HHHHHHHHhHhccCceeEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-----------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-----------~~~~~~~~~~~~~~W~~~~~ 571 (595)
+ ..-....+|-|+-|+|+|||++++.+.. --.+++++++..--|+....
T Consensus 145 ~-------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 145 I-------EPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp S-------CGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred C-------CHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 5 2345678999999999999999985321 12578888888888887554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=76.90 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=83.6
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc---chhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG---LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG---lig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
-..|||+|||.|.++..|..... +|+-.|-. ..+..+-++- +--...|..+ ++ ++.+||+|.+..++.+..
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR---TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS-FE-VPTSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC---EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS-CC-CCSCCSEEEEESCGGGSC
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC---eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh-cC-CCCCeEEEEECcchhcCC
Confidence 36899999999999999987643 45555544 5555555542 2111222221 21 238999999999887653
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCC----hH---------------------------HHHHHHHhHhccCc
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----PE---------------------------VIDKVSRIANTVRW 566 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~----~~---------------------------~~~~~~~~~~~~~W 566 (595)
+ -....+|-|+-|+|+|||.+++.+. .. ..++++++++.--+
T Consensus 121 ------~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 193 (220)
T 3hnr_A 121 ------D-DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGF 193 (220)
T ss_dssp ------H-HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTE
T ss_pred ------h-HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCC
Confidence 1 1113489999999999999999741 11 12567777777778
Q ss_pred eeEEeccCCCCCCCceEEEEEec
Q 007645 567 TAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 567 ~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
++...... .-.=++.++|+
T Consensus 194 ~v~~~~~~----~~~w~~~~~~~ 212 (220)
T 3hnr_A 194 HVTFTRLN----HFVWVMEATKQ 212 (220)
T ss_dssp EEEEEECS----SSEEEEEEEEC
T ss_pred EEEEeecc----ceEEEEeehhh
Confidence 76665322 12345555554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-05 Score=74.08 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=76.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.+|||+|||.|.++.+|...+. .+|+-.|-. ..+..+-++ |+-.+---.+..+...+.+||+|.++..+..
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-- 137 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-- 137 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH--
T ss_pred CEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH--
Confidence 5899999999999999977653 244445543 555555444 4422111112222333589999998766542
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCceeEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
+..+|-++-|+|+|||.+++.+ .....+.+.+++...-++....
T Consensus 138 ----------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~ 182 (205)
T 3grz_A 138 ----------LLDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENSFQIDLK 182 (205)
T ss_dssp ----------HHHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTTEEEEEE
T ss_pred ----------HHHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcCCceEEe
Confidence 3568999999999999999974 2334666777777777766544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=4.9e-05 Score=85.82 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=66.7
Q ss_pred cceEEEECCCCcHH---HHHHhhcCCceEEEEeecCcHHHHHHHH----HcCC--CeEEEEcccccCCCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASF---GGSMLSENILTLSFAPRDSHKAQIQFAL----ERGI--PAFVAMLGTRRLPFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~---a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~--~~~~~~~d~~~LPfpd~sFDlV~~s 271 (595)
...|||||||+|.+ +...++++...+.+.+++-++.+. .|+ +++. .+.++.++++++..| +.+|+|+|-
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVSE 435 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVSE 435 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence 45799999999977 444444444556788888887543 333 2333 478889999888766 689999984
Q ss_pred CCCccc-ccCHHHHHHHHHhhcCCCcEEE
Q 007645 272 RCLIPF-TAYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 272 ~vL~h~-~~d~~~~L~Ei~RvLRPGG~lv 299 (595)
..-.-. .+.....|...+|.|||||.++
T Consensus 436 wMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 322111 1333467888899999999874
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.86 E-value=7.9e-06 Score=80.95 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=65.7
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh---hhcccCCCCCCCC-CccchhhccC
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~wce~f~typ-rtyDl~H~~~ 511 (595)
.-.+|||+|||.|.++..|...-- .|+-.|-. ..+..+-++ |+-. ...|. +.++ +| .+||+|.+..
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~-~~l~-~~~~~fD~V~~~~ 111 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMP-FTDERFHIVTCRI 111 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCC-SCTTCEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH-HhCC-CCCCCEEEEEEhh
Confidence 456899999999999999976532 55555543 555554443 4321 12222 2222 44 8999999998
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
++-++. +...+|-|+-|+|||||.+++.
T Consensus 112 ~l~~~~---------d~~~~l~~~~r~LkpgG~l~~~ 139 (260)
T 1vl5_A 112 AAHHFP---------NPASFVSEAYRVLKKGGQLLLV 139 (260)
T ss_dssp CGGGCS---------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHhcC---------CHHHHHHHHHHHcCCCCEEEEE
Confidence 887663 4568999999999999999996
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.8e-06 Score=76.71 Aligned_cols=150 Identities=12% Similarity=0.016 Sum_probs=89.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc----cc---hhhhcccCCCCC-CCCCccc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL---IGVYHDWCEPFS-TYPRTYD 505 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~~~wce~f~-typrtyD 505 (595)
+..+ .+|||+|||.|.++.+|.+. +-- +|+-.|-. ..+..+-++ |+ +-.++.=.+.+. ..+.+||
T Consensus 20 ~~~~--~~vLDlGcG~G~~~~~l~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD 95 (197)
T 3eey_A 20 VKEG--DTVVDATCGNGNDTAFLASLVGENG--RVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK 95 (197)
T ss_dssp CCTT--CEEEESCCTTSHHHHHHHHHHCTTC--EEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE
T ss_pred CCCC--CEEEEcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce
Confidence 4444 48999999999999888654 211 44555544 555554443 33 111111112233 2348999
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC------ChHHHHHHHHhHhccC---ceeEEeccCCC
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVR---WTAAVHDKEPG 576 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd------~~~~~~~~~~~~~~~~---W~~~~~~~~~~ 576 (595)
+|-++..+-...+.......-....+|-|+-|+|||||.+++.+ ..+..+.+.+.+..+. |++.....-+.
T Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~ 175 (197)
T 3eey_A 96 AVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRTDFINQ 175 (197)
T ss_dssp EEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEEEETTC
T ss_pred EEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEEEeccC
Confidence 99987655211100000001122368999999999999999873 2224555666665554 88877766666
Q ss_pred CCCCceEEEEEecc
Q 007645 577 SNGREKILVATKSL 590 (595)
Q Consensus 577 ~~~~~~~l~~~K~~ 590 (595)
...+..++|.+|..
T Consensus 176 ~~~pp~~~~~~~~~ 189 (197)
T 3eey_A 176 ANCPPILVCIEKIS 189 (197)
T ss_dssp CSCCCEEEEEEECC
T ss_pred ccCCCeEEEEEEcc
Confidence 66677888888864
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=5e-05 Score=87.03 Aligned_cols=118 Identities=17% Similarity=0.089 Sum_probs=79.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcC------C----------------------------------
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSEN------I---------------------------------- 223 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~g------v---------------------------------- 223 (595)
..+...+........+ .++||.+||+|.++..++... .
T Consensus 176 e~LAa~ll~~~~~~~~--~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPG--TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp HHHHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCC--CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 3445555555554443 489999999999988766531 0
Q ss_pred -ceEEEEeecCcHHHHHHHHHc----CCC--eEEEEcccccC--CCCCCceeEEEEcCCCcccc-c--CHHHH---HHHH
Q 007645 224 -LTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRRL--PFPAFSFDIVHCSRCLIPFT-A--YNATY---LIEV 288 (595)
Q Consensus 224 -~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~L--Pfpd~sFDlV~~s~vL~h~~-~--d~~~~---L~Ei 288 (595)
....+.++|+++.+++.|+++ |+. +.+.+.|+..+ |..+++||+|+++--+..-. . +...+ +.++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 014789999999999999876 554 68889998777 44445899999985442211 1 12233 4455
Q ss_pred HhhcCCCcEEEEEcC
Q 007645 289 DRLLRPGGYLVISGP 303 (595)
Q Consensus 289 ~RvLRPGG~lvls~p 303 (595)
.+.+.|||.+++.++
T Consensus 334 lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 334 MKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHCTTCEEEEEES
T ss_pred HHhhCCCCeEEEEeC
Confidence 555668999999876
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1e-05 Score=82.00 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=61.0
Q ss_pred eeeEEecccchhHHHhh----hcC--CCeEEEEeccCCCC-CchhHHhhc-----cchhhhcccC----CCCC-----CC
Q 007645 442 IRNIMDMNAFFGGFAAA----LTS--DPVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWC----EPFS-----TY 500 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~----l~~--~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~wc----e~f~-----ty 500 (595)
=..|||+|||.|.++.. |.. ..+- ..++-.|-. +-|..+-+| |+-.+--.|. +.+. .+
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 35799999999986543 322 2332 233444433 555555444 3322111111 1121 12
Q ss_pred -CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 501 -PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 501 -prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.+||+|++..++-++. +....|-||-|+|||||.+++.
T Consensus 132 ~~~~fD~V~~~~~l~~~~---------d~~~~l~~~~r~LkpgG~l~i~ 171 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVK---------DIPATLKFFHSLLGTNAKMLII 171 (292)
T ss_dssp CCCCEEEEEEESCGGGCS---------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCceeEEEEeeeeeecC---------CHHHHHHHHHHHcCCCcEEEEE
Confidence 38999999999998764 4678999999999999999985
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5.1e-06 Score=81.83 Aligned_cols=98 Identities=15% Similarity=0.160 Sum_probs=67.2
Q ss_pred CeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhccc-----hhhhcccCCCCCCCCCccchhhccCcc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDRGL-----IGVYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eRGl-----ig~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.-.+|||+|||.|.++..|... .. +|+-.|-. ..+..+-++.- --...|..+ ++.-+.+||+|++..++
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~-~~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGNNKIIFEANDILT-KEFPENNFDLIYSRDAI 130 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT-CCCCTTCEEEEEEESCG
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc-CCCCCCcEEEEeHHHHH
Confidence 3468999999999999998764 32 44445543 66666666531 112223332 22223899999999888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++ ..-....+|-|+-|+|||||.+++.+
T Consensus 131 ~~~-------~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (266)
T 3ujc_A 131 LAL-------SLENKNKLFQKCYKWLKPTGTLLITD 159 (266)
T ss_dssp GGS-------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Hhc-------ChHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 865 12345689999999999999999974
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=97.83 E-value=8.5e-06 Score=75.87 Aligned_cols=116 Identities=16% Similarity=0.166 Sum_probs=72.1
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cch-----hhhcccCCCCCCCCCccchhhccC
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI-----GVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli-----g~~~~wce~f~typrtyDl~H~~~ 511 (595)
-..|||+|||.|.++.+|.... -+|+-.|-. ..+..+-++ |+- -...|..+.+. +.+||+|.++.
T Consensus 53 ~~~vLdiG~G~G~~~~~~~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~ 127 (194)
T 1dus_A 53 DDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--DRKYNKIITNP 127 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--TSCEEEEEECC
T ss_pred CCeEEEeCCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--cCCceEEEECC
Confidence 3589999999999999987762 244444543 455544443 332 12234444333 47999999877
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~ 570 (595)
.+.. ..-....+|-++-|+|+|||.+++.+.. ....++.+.++..-+++..
T Consensus 128 ~~~~--------~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 179 (194)
T 1dus_A 128 PIRA--------GKEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVET 179 (194)
T ss_dssp CSTT--------CHHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEE
T ss_pred Cccc--------chhHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHHhcceEE
Confidence 6542 1134567999999999999999997433 2333344444444333333
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.6e-05 Score=78.68 Aligned_cols=72 Identities=17% Similarity=0.068 Sum_probs=56.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcH-------HHHHHHHHc----CC--CeEEEEcccccC-C-CCC--Cc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHK-------AQIQFALER----GI--PAFVAMLGTRRL-P-FPA--FS 264 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~-------~~l~~A~er----g~--~~~~~~~d~~~L-P-fpd--~s 264 (595)
.+|||+|||+|.++..|+..+. .++++|+++ .+++.|+++ ++ .+.+..+|...+ + +++ ++
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~ 161 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK 161 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred CeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence 4899999999999999999753 678899999 889888764 22 378888887653 3 444 78
Q ss_pred eeEEEEcCCCcc
Q 007645 265 FDIVHCSRCLIP 276 (595)
Q Consensus 265 FDlV~~s~vL~h 276 (595)
||+|++...+.+
T Consensus 162 fD~V~~dP~~~~ 173 (258)
T 2r6z_A 162 PDIVYLDPMYPE 173 (258)
T ss_dssp CSEEEECCCC--
T ss_pred ccEEEECCCCCC
Confidence 999999877754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.5e-05 Score=80.05 Aligned_cols=116 Identities=12% Similarity=0.164 Sum_probs=75.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hh-hhcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|||+|||.|.++.+|..... +|+-.|-. ..+..+-++ |+ +- ...|..+ ++. +.+||+|.+..+|.+
T Consensus 122 ~~vLD~GcG~G~~~~~l~~~g~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 122 CKVLDLGCGQGRNSLYLSLLGY---DVTSWDHNENSIAFLNETKEKENLNISTALYDINA-ANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG-CCC-CSCEEEEEECSSGGG
T ss_pred CcEEEECCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccc-ccc-cCCccEEEEccchhh
Confidence 5799999999999999987743 55555544 445443333 33 11 1112221 222 689999999998875
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC--------------hHHHHHHHHhHhccCceeEEec
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------------PEVIDKVSRIANTVRWTAAVHD 572 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~--------------~~~~~~~~~~~~~~~W~~~~~~ 572 (595)
. +.-.+..+|-++-|+|+|||.+++-.. .-.-++++++... |++...+
T Consensus 197 ~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~ 258 (286)
T 3m70_A 197 L-------NRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEYN 258 (286)
T ss_dssp S-------CGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEEE
Confidence 5 334566899999999999999777311 0113456666666 8876653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=97.82 E-value=8.2e-06 Score=80.27 Aligned_cols=93 Identities=13% Similarity=0.180 Sum_probs=62.2
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchh----hhcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~wce~f~typrtyDl~H~~~~ 512 (595)
.+|||+|||.|.++.+|... .. +|+-.|-. ..+..+-+ .|+-. ...|+.+ ++. +.+||+|.+.++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~fD~V~~~~~ 112 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YVA-NEKCDVAACVGA 112 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CCC-SSCEEEEEEESC
T ss_pred CEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CCc-CCCCCEEEECCC
Confidence 58999999999999888653 22 33444433 44554433 34321 1222222 222 689999999887
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+-++. +...+|-|+-|+|||||.+++.+
T Consensus 113 ~~~~~---------~~~~~l~~~~r~LkpgG~l~~~~ 140 (256)
T 1nkv_A 113 TWIAG---------GFAGAEELLAQSLKPGGIMLIGE 140 (256)
T ss_dssp GGGTS---------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred hHhcC---------CHHHHHHHHHHHcCCCeEEEEec
Confidence 76542 46789999999999999999974
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.82 E-value=4e-05 Score=85.30 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=81.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcC------C--------ceEEEEeecCcHHHHHHHHHc----C
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSEN------I--------LTLSFAPRDSHKAQIQFALER----G 245 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~g------v--------~~~~v~~vD~s~~~l~~A~er----g 245 (595)
...++.+.+++.... .+|||.+||+|.|...+++.- . ....+.|+|+++.+++.|+.+ +
T Consensus 231 ~~Vv~lmv~ll~p~~---~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~g 307 (544)
T 3khk_A 231 KSIVTLIVEMLEPYK---GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRG 307 (544)
T ss_dssp HHHHHHHHHHHCCCS---EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCC---CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhC
Confidence 344556666654432 289999999999988765420 0 135899999999999998864 5
Q ss_pred CCeEE--EEcccccCC-CCCCceeEEEEcCCCcc--ccc--------------------------CHHHHHHHHHhhcCC
Q 007645 246 IPAFV--AMLGTRRLP-FPAFSFDIVHCSRCLIP--FTA--------------------------YNATYLIEVDRLLRP 294 (595)
Q Consensus 246 ~~~~~--~~~d~~~LP-fpd~sFDlV~~s~vL~h--~~~--------------------------d~~~~L~Ei~RvLRP 294 (595)
+...+ ..+|+...+ +++..||+|+++--+.. |.. ..-.++..+.+.|+|
T Consensus 308 i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~ 387 (544)
T 3khk_A 308 IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP 387 (544)
T ss_dssp CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE
T ss_pred CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc
Confidence 54444 555544333 55689999999766542 210 011688999999999
Q ss_pred CcEEEEEcCC
Q 007645 295 GGYLVISGPP 304 (595)
Q Consensus 295 GG~lvls~p~ 304 (595)
||+++++.|.
T Consensus 388 gGr~aiVlP~ 397 (544)
T 3khk_A 388 TGSMALLLAN 397 (544)
T ss_dssp EEEEEEEEET
T ss_pred CceEEEEecc
Confidence 9999999874
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=81.80 Aligned_cols=84 Identities=11% Similarity=0.066 Sum_probs=59.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccccCC--
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTRRLP-- 259 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~~LP-- 259 (595)
.++.+.+.+....+. +|||+|||+|.++..++++.. ...++++|.++.+++.|+++. .++.+.+.+...++
T Consensus 14 Ll~e~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 14 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL 90 (301)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 344555555554444 899999999999999998732 357899999999999998863 35667777766554
Q ss_pred CC---CCceeEEEEcC
Q 007645 260 FP---AFSFDIVHCSR 272 (595)
Q Consensus 260 fp---d~sFDlV~~s~ 272 (595)
+. .++||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 11 14677777543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=78.74 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhh-cccCCCC
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVY-HDWCEPF 497 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~-~~wce~f 497 (595)
..|+.......+.+...+. .-.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++..--.. .|. +.+
T Consensus 35 ~~~~~~~~~~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~d~-~~~ 108 (260)
T 2avn_A 35 PKWKLYHRLIGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKA-EDL 108 (260)
T ss_dssp HHHHHHHHHHHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCT-TSC
T ss_pred cchhHHHHHHHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC---eEEEEeCCHHHHHHHHhhcCCCEEECcH-HHC
Confidence 4554333333444444444 336899999999999999987743 45555544 566666666431011 111 122
Q ss_pred CCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 498 STYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 498 ~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+ +| .+||+|-+...+.++. -+...+|-|+-|+|+|||.+++..
T Consensus 109 ~-~~~~~fD~v~~~~~~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~ 152 (260)
T 2avn_A 109 P-FPSGAFEAVLALGDVLSYV--------ENKDKAFSEIRRVLVPDGLLIATV 152 (260)
T ss_dssp C-SCTTCEEEEEECSSHHHHC--------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCCCCEEEEEEcchhhhcc--------ccHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 33 7999999887766663 127889999999999999999974
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.5e-05 Score=79.41 Aligned_cols=92 Identities=22% Similarity=0.199 Sum_probs=62.1
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhh-hcccCCCCCCCC-CccchhhccCccccccC
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGV-YHDWCEPFSTYP-RTYDLIHVSGIESLIKN 518 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~-~~~wce~f~typ-rtyDl~H~~~~~s~~~~ 518 (595)
-.+|||+|||.|.++..|.+... +|+-.|-. ..+..+-++.-+-. ..|. +.++ +| .+||+||+..++.++
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l~~~-- 107 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVVHPQVEWFTGYA-ENLA-LPDKSVDGVISILAIHHF-- 107 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCCCTTEEEECCCT-TSCC-SCTTCBSEEEEESCGGGC--
T ss_pred CCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHhccCCEEEECch-hhCC-CCCCCEeEEEEcchHhhc--
Confidence 47899999999999999987543 33334432 33333333321111 1222 3333 44 899999999998765
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-+...+|-|+-|+|| ||++++.
T Consensus 108 -------~~~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 108 -------SHLEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp -------SSHHHHHHHHHHHBC-SSCEEEE
T ss_pred -------cCHHHHHHHHHHHhC-CcEEEEE
Confidence 356789999999999 9977775
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.80 E-value=8e-06 Score=75.33 Aligned_cols=126 Identities=14% Similarity=0.111 Sum_probs=83.7
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCCCCCCC-CccchhhccCcccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIK 517 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~f~typ-rtyDl~H~~~~~s~~~ 517 (595)
-.+|||+|||.|.++.+|...- - +|+-.|-. ..+..+-++. +--...| ..+| .+||+|.+..++.+..
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~--~-~v~~vD~s~~~~~~a~~~~~~v~~~~~d-----~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFA--T-KLYCIDINVIALKEVKEKFDSVITLSDP-----KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTE--E-EEEEECSCHHHHHHHHHHCTTSEEESSG-----GGSCTTCEEEEEEESCSTTCS
T ss_pred CCeEEEECCCCCHHHHHHHhhc--C-eEEEEeCCHHHHHHHHHhCCCcEEEeCC-----CCCCCCceEEEEEccchhccc
Confidence 3789999999999999998764 1 66666654 6676666661 1111222 2234 7999999999888652
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-------------HHHHHHHHhHhccCceeEEeccCCCCCCCceEE
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------EVIDKVSRIANTVRWTAAVHDKEPGSNGREKIL 584 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-------------~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l 584 (595)
+...+|-|+-|+|+|||.+++.+-. --.++++++++ -|+...... .+ ...-.+
T Consensus 90 ---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~~-~~--~~~~~l 155 (170)
T 3i9f_A 90 ---------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRFN-PT--PYHFGL 155 (170)
T ss_dssp ---------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEEC-SS--TTEEEE
T ss_pred ---------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEccC-CC--CceEEE
Confidence 4678999999999999999997321 11456667666 666544321 11 133556
Q ss_pred EEEec
Q 007645 585 VATKS 589 (595)
Q Consensus 585 ~~~K~ 589 (595)
++.|+
T Consensus 156 ~~~~~ 160 (170)
T 3i9f_A 156 VLKRK 160 (170)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 66654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-05 Score=74.13 Aligned_cols=128 Identities=13% Similarity=0.130 Sum_probs=76.8
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccch--hhh-cccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLI--GVY-HDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGli--g~~-~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|... |- .+|+-.|-. ..+..+-+ .|+- -.+ .|+.+ +. -+.+||+|.+..+
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~D~i~~~~~- 141 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPE--AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE-FP-SEPPFDGVISRAF- 141 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT-SC-CCSCEEEEECSCS-
T ss_pred CeEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh-CC-ccCCcCEEEEecc-
Confidence 47999999999998888642 21 133444433 44444333 2442 122 22222 11 1278999986432
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEec--cCCCCCCCceEEEEEec
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHD--KEPGSNGREKILVATKS 589 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~--~~~~~~~~~~~l~~~K~ 589 (595)
.....++-++-|+|+|||++++......-++++.+.+ .|+..... .-+...+...+++++|+
T Consensus 142 ------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~k~ 205 (207)
T 1jsx_A 142 ------------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGERHLVVIKAN 205 (207)
T ss_dssp ------------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEEEEEEEEEC
T ss_pred ------------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCceEEEEEEec
Confidence 2356799999999999999999865555567777766 67654321 12223345677777764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=9.1e-06 Score=79.80 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=65.2
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cch--hh-hcccCCCCCCCCCccchhhccCcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI--GV-YHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli--g~-~~~wce~f~typrtyDl~H~~~~~ 513 (595)
-.+|||+|||.|.++.+|...-- +|+-.|-. ..+..+-++ |+- -. ..|. +.++.-+.+||+|.+..++
T Consensus 22 ~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~v~~~~~l 97 (239)
T 1xxl_A 22 EHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA-ESLPFPDDSFDIITCRYAA 97 (239)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT-TBCCSCTTCEEEEEEESCG
T ss_pred CCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc-ccCCCCCCcEEEEEECCch
Confidence 36899999999999999876532 45555543 455544332 331 11 2222 3333223899999999888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++. +...+|-|+-|+|||||.+++.+
T Consensus 98 ~~~~---------~~~~~l~~~~~~LkpgG~l~~~~ 124 (239)
T 1xxl_A 98 HHFS---------DVRKAVREVARVLKQDGRFLLVD 124 (239)
T ss_dssp GGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcc---------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7663 46789999999999999999963
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.4e-06 Score=79.07 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCC
Q 007645 420 RRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEP 496 (595)
Q Consensus 420 ~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~ 496 (595)
..|....+.+.+.+...+.. -..|||+|||.|.++..|.+.-- +|+-.|-. ..+..+-++. +--...|.. .
T Consensus 21 ~~~~~~~~~~~~~l~~~~~~--~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~-~ 94 (239)
T 3bxo_A 21 KDYAAEASDIADLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLPDATLHQGDMR-D 94 (239)
T ss_dssp CCHHHHHHHHHHHHHHHCTT--CCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCTTCEEEECCTT-T
T ss_pred hhHHHHHHHHHHHHHHhcCC--CCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCCCCEEEECCHH-H
Confidence 55666666666655544433 36899999999999999865421 44445543 5566555552 111112222 2
Q ss_pred CCCCCCccchhhc-cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 497 FSTYPRTYDLIHV-SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 497 f~typrtyDl~H~-~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
++ .+.+||+|.| .+++.+.. +.-....+|-++-|+|+|||.+++.+
T Consensus 95 ~~-~~~~~D~v~~~~~~~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (239)
T 3bxo_A 95 FR-LGRKFSAVVSMFSSVGYLK------TTEELGAAVASFAEHLEPGGVVVVEP 141 (239)
T ss_dssp CC-CSSCEEEEEECTTGGGGCC------SHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cc-cCCCCcEEEEcCchHhhcC------CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 22 2689999995 44666542 22345689999999999999999974
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.1e-06 Score=78.57 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=79.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-cchhhhcccCCCCCCCCCccchhhccCccccccCCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPG 520 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-Glig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~ 520 (595)
..|||+|||.|.++..|.+... +|+-.|-. ..+..+-++ ++--...|.. .++ .+.+||+|.+..++.+.
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~d~~-~~~-~~~~fD~v~~~~~l~~~---- 115 (211)
T 3e23_A 45 AKILELGCGAGYQAEAMLAAGF---DVDATDGSPELAAEASRRLGRPVRTMLFH-QLD-AIDAYDAVWAHACLLHV---- 115 (211)
T ss_dssp CEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHTSCCEECCGG-GCC-CCSCEEEEEECSCGGGS----
T ss_pred CcEEEECCCCCHHHHHHHHcCC---eEEEECCCHHHHHHHHHhcCCceEEeeec-cCC-CCCcEEEEEecCchhhc----
Confidence 5899999999999999987643 45555544 566666665 3322222222 223 34899999999888754
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEeCCh---------------HHHHHHHHhHhccC-ceeEEe
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDKVSRIANTVR-WTAAVH 571 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~---------------~~~~~~~~~~~~~~-W~~~~~ 571 (595)
..-....+|-|+-|+|+|||.+++.... --.+.++++++.-- ++....
T Consensus 116 ---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 116 ---PRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred ---CHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 2225567999999999999999996211 13567777777766 775544
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=2.7e-05 Score=74.35 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=62.8
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCCCCCCC-CccchhhccCcccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIK 517 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~f~typ-rtyDl~H~~~~~s~~~ 517 (595)
-.+|||+|||.|.++..| .. -+|+-.|-. ..+..+-++. +--...|. +.++ +| .+||+|.+..++.+..
T Consensus 37 ~~~vLdiG~G~G~~~~~l-~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l~~~~ 109 (211)
T 2gs9_A 37 GESLLEVGAGTGYWLRRL-PY----PQKVGVEPSEAMLAVGRRRAPEATWVRAWG-EALP-FPGESFDVVLLFTTLEFVE 109 (211)
T ss_dssp CSEEEEETCTTCHHHHHC-CC----SEEEEECCCHHHHHHHHHHCTTSEEECCCT-TSCC-SCSSCEEEEEEESCTTTCS
T ss_pred CCeEEEECCCCCHhHHhC-CC----CeEEEEeCCHHHHHHHHHhCCCcEEEEccc-ccCC-CCCCcEEEEEEcChhhhcC
Confidence 358999999999999998 32 034444544 5555555552 11111121 2222 33 7999999998887542
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+...+|-|+-|+|+|||.+++.+
T Consensus 110 ---------~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 110 ---------DVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp ---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------CHHHHHHHHHHHcCCCCEEEEEe
Confidence 56789999999999999999974
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00091 Score=70.89 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=63.5
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHh----hccchh---hhcccCCCCCCCC-CccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIY----DRGLIG---VYHDWCEPFSTYP-RTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~----eRGlig---~~~~wce~f~typ-rtyDl~H~~~~ 512 (595)
..|+|+|||.|.|+.+|... |- ..|+-.|.. ..+..+- +.|+-. +--.+...+...| .+||+|-++-.
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~--~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQ--AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP 301 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCC
T ss_pred CeEEEEeCcchHHHHHHHHHCCC--CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCC
Confidence 68999999999999988654 11 123333332 3333222 233321 1012223333445 79999999887
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC--ChHHHHHHHHhHh
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRIAN 562 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd--~~~~~~~~~~~~~ 562 (595)
|.... .-.+-....+|-++-|+|+|||.+++.. ....-..++++..
T Consensus 302 fh~~~----~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg 349 (375)
T 4dcm_A 302 FHQQH----ALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG 349 (375)
T ss_dssp C-----------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred cccCc----ccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence 75321 0112223368899999999999999952 3333344444433
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.76 E-value=2e-05 Score=78.98 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=64.6
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCCCCCCCCccchhhccCccccccC
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
-.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++. +--...|. +.++ ++.+||+|++..++.+..
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~- 131 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNYPHLHFDVADA-RNFR-VDKPLDAVFSNAMLHWVK- 131 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCTTSCEEECCT-TTCC-CSSCEEEEEEESCGGGCS-
T ss_pred CCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhCCCCEEEECCh-hhCC-cCCCcCEEEEcchhhhCc-
Confidence 36899999999999999977433 34444433 5555555542 11111222 2233 468999999998887542
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+...+|-|+-|+|||||.+++.
T Consensus 132 --------d~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 132 --------EPEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp --------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred --------CHHHHHHHHHHhcCCCcEEEEE
Confidence 4668999999999999999996
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=80.72 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cch---hhhcccCCCCCCC-CCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI---GVYHDWCEPFSTY-PRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli---g~~~~wce~f~ty-prtyDl~H~~~~~ 513 (595)
..|||+|||.|.++..|..... +|+-.|-. ..+..+-++ |+- -.++.=.+.++.+ +.+||+|.+..++
T Consensus 70 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 146 (285)
T 4htf_A 70 LRVLDAGGGEGQTAIKMAERGH---QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL 146 (285)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred CEEEEeCCcchHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence 5799999999999999987743 44445543 555555443 432 1222111233323 3899999999998
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+.. +...+|-|+-|+|||||.+++.+
T Consensus 147 ~~~~---------~~~~~l~~~~~~LkpgG~l~~~~ 173 (285)
T 4htf_A 147 EWVA---------DPRSVLQTLWSVLRPGGVLSLMF 173 (285)
T ss_dssp GGCS---------CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hccc---------CHHHHHHHHHHHcCCCeEEEEEE
Confidence 8663 34789999999999999999974
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.9e-05 Score=75.92 Aligned_cols=116 Identities=18% Similarity=0.261 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----c--chhhhccc
Q 007645 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----G--LIGVYHDW 493 (595)
Q Consensus 421 ~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----G--lig~~~~w 493 (595)
.+..+.....+.+...+.. -.+|||+|||.|.++..|....- +|+-.|-. ..+..+-++ | +--+..|.
T Consensus 20 ~~~~~~~~~~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~ 94 (227)
T 1ve3_A 20 EYRSRIETLEPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA 94 (227)
T ss_dssp HHHHHHHHHHHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT
T ss_pred HHHHHHHHHHHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCceEEECch
Confidence 4445555555555444444 35899999999999998866533 45555543 455544443 1 11122232
Q ss_pred CCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 494 CEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 494 ce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.+ ++ +| .+||+|.+..++..+. .-+...+|-++-|+|+|||.+++.+.
T Consensus 95 ~~-~~-~~~~~~D~v~~~~~~~~~~-------~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 95 RK-LS-FEDKTFDYVIFIDSIVHFE-------PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp TS-CC-SCTTCEEEEEEESCGGGCC-------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hc-CC-CCCCcEEEEEEcCchHhCC-------HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 22 22 33 7999999998854432 22456799999999999999999754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.4e-05 Score=79.03 Aligned_cols=98 Identities=10% Similarity=0.070 Sum_probs=64.7
Q ss_pred CCeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----c--chhhhcccCCCCCCCCCccchhhc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----G--LIGVYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----G--lig~~~~wce~f~typrtyDl~H~ 509 (595)
..-.+|||+|||.|.++..|.+. .. +|+-.|-. ..+..+-++ | +-=...|.. .++ +|.+||+||+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~ 95 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT-EIE-LNDKYDIAIC 95 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT-TCC-CSSCEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh-hcC-cCCCeeEEEE
Confidence 34478999999999999999765 22 22333322 444433332 2 111122322 232 4689999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
..++.+.. +...+|-|+-|+|+|||++++.+..
T Consensus 96 ~~~l~~~~---------~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 96 HAFLLHMT---------TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp ESCGGGCS---------SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CChhhcCC---------CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99888653 4468999999999999999987543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=1.6e-05 Score=78.40 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=76.1
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--------------------------------c-
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--------------------------------L- 486 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--------------------------------l- 486 (595)
.-.+|||+|||.|.++..|..... -+|+-.|-. ..+..+-++- |
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 347899999999999988876544 345555543 4444443221 0
Q ss_pred --h-h-hhcccCCCCCCCC---CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh--------
Q 007645 487 --I-G-VYHDWCEPFSTYP---RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------- 551 (595)
Q Consensus 487 --i-g-~~~~wce~f~typ---rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-------- 551 (595)
+ - ...|..+.-+.-+ .+||+|.+..++.... .+.-....+|-|+-|+|+|||.+|+.+..
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~-----~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 208 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC-----PDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIG 208 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc-----CChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcC
Confidence 1 1 1122222111112 7999999998887432 11124567899999999999999997411
Q ss_pred --------HHHHHHHHhHhccCceeEEe
Q 007645 552 --------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 552 --------~~~~~~~~~~~~~~W~~~~~ 571 (595)
--.+.+.+++...-++....
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 236 (265)
T 2i62_A 209 EQKFSSLPLGWETVRDAVEEAGYTIEQF 236 (265)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CccccccccCHHHHHHHHHHCCCEEEEE
Confidence 01346777777666765544
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00024 Score=73.05 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=82.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----------CCCeEEEEcc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----------GIPAFVAMLG 254 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----------g~~~~~~~~d 254 (595)
.|-+.+....-...+..++||=||.|.|..+..+++.. .+..++.+|+++..++.|++. ...+.+...|
T Consensus 68 ~YhE~l~h~~l~~~p~pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~D 146 (294)
T 3o4f_A 68 IYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDD 146 (294)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEech
Confidence 34444443322233446699999999999999999873 234777789999999999864 2457888888
Q ss_pred cccC-CCCCCceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 255 TRRL-PFPAFSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 255 ~~~L-Pfpd~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.... .-..++||+|+.-.. ..... ....+++.+.+.|+|||.++....
T Consensus 147 g~~~l~~~~~~yDvIi~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 147 GVNFVNQTSQTFDVIISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp TTTTTSCSSCCEEEEEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred HHHHHhhccccCCEEEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 6543 345678999997431 11110 124789999999999999998654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.4e-05 Score=78.77 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=68.6
Q ss_pred hccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc----hhhhcccCCCCCCCCCccchhhc
Q 007645 435 VKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL----IGVYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 435 ~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl----ig~~~~wce~f~typrtyDl~H~ 509 (595)
..+....=.+|||+|||.|.++.+|.....- +|+-.|-. ..+..+-++.- --...|. +.++.-+.+||+|.+
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~ 114 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTTSPVVCYEQKAI-EDIAIEPDAYNVVLS 114 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCCCTTEEEEECCG-GGCCCCTTCEEEEEE
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhccCCeEEEEcch-hhCCCCCCCeEEEEE
Confidence 3444434478999999999999999766431 44455543 55655555531 1111121 122322389999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
..++.++. +...+|-|+-|+|+|||.+++.
T Consensus 115 ~~~l~~~~---------~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 115 SLALHYIA---------SFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp ESCGGGCS---------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred chhhhhhh---------hHHHHHHHHHHHcCCCcEEEEE
Confidence 99887653 4678999999999999999996
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.4e-05 Score=69.34 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=72.6
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cch---hhhcccCCCCCCCCCccchhhccCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLI---GVYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Gli---g~~~~wce~f~typrtyDl~H~~~~ 512 (595)
-..|+|+|||.|.++..|... |- ..|+-.|-. ..+..+-++ |+- -+..|..+.++..+.+||+|.+...
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 103 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQ--TTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGG 103 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSS--EEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCC--CeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCc
Confidence 368999999999999988665 22 234444443 455555443 432 1223333444443478999997766
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCceeE
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~~~ 569 (595)
+.+ ..+|-++-|+|+|||.+++.+. .+-...+.++.+...+++.
T Consensus 104 ~~~-------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 104 LTA-------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTIS 148 (178)
T ss_dssp TTC-------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEE
T ss_pred ccH-------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeE
Confidence 642 5589999999999999999753 3445556666655555543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.6e-05 Score=78.27 Aligned_cols=93 Identities=17% Similarity=0.241 Sum_probs=65.2
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc--c----chhhhcccCCCCCCCC-CccchhhccCcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--G----LIGVYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR--G----lig~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
-.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ + +--...|. +.++ +| .+||+|++..++
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA-RAIP-LPDESVHGVIVVHLW 114 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT-TSCC-SCTTCEEEEEEESCG
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHhhccCCceEEEEccc-ccCC-CCCCCeeEEEECCch
Confidence 46899999999999999987643 45555544 556655554 1 11122232 2233 34 799999999888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+.. +...+|-|+-|+|||||.+++.
T Consensus 115 ~~~~---------~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 115 HLVP---------DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGCT---------THHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcC---------CHHHHHHHHHHHCCCCcEEEEE
Confidence 7542 4678999999999999999985
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=75.18 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=82.5
Q ss_pred HHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-----chhhhcccCCCCCCCC-
Q 007645 429 YKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYP- 501 (595)
Q Consensus 429 y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~wce~f~typ- 501 (595)
+.+.+...+..+ .+|||+|||.|.++..|.....- +|+-.|-. ..+..+-++. +--...|..+ + .+|
T Consensus 32 ~~~~l~~~~~~~--~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~-~-~~~~ 105 (215)
T 2pxx_A 32 FRALLEPELRPE--DRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRK-L-DFPS 105 (215)
T ss_dssp HHHHHGGGCCTT--CCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTS-C-CSCS
T ss_pred HHHHHHHhcCCC--CeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhc-C-CCCC
Confidence 334444444433 57999999999999998765321 33334433 4444444331 1111223222 2 233
Q ss_pred CccchhhccCccccccCCCCC------CCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhH--hccCceeEEecc
Q 007645 502 RTYDLIHVSGIESLIKNPGSN------KNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIA--NTVRWTAAVHDK 573 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~------~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~--~~~~W~~~~~~~ 573 (595)
.+||+|-+..++......... .+.-....+|-|+-|+|+|||.+++.+...-- ..+.+. ....|+......
T Consensus 106 ~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (215)
T 2pxx_A 106 ASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPH-FRTRHYAQAYYGWSLRHATY 184 (215)
T ss_dssp SCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHH-HHHHHHCCGGGCEEEEEEEE
T ss_pred CcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcH-HHHHHHhccccCcEEEEEEe
Confidence 799999998888644200000 00124568999999999999999998654211 122232 345687665533
Q ss_pred CCCCCCCceEEEEEe
Q 007645 574 EPGSNGREKILVATK 588 (595)
Q Consensus 574 ~~~~~~~~~~l~~~K 588 (595)
+++. .-.+.+++|
T Consensus 185 ~~~~--~~~~~~~~~ 197 (215)
T 2pxx_A 185 GSGF--HFHLYLMHK 197 (215)
T ss_dssp SGGG--CEEEEEEEE
T ss_pred cCcc--eEEEEEEEe
Confidence 3222 223455554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.2e-05 Score=80.11 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=65.4
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCCCccchhhccCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~H~~~~ 512 (595)
-.+|||+|||.|.++..|...+- .+|+-.|-. ..+..+-++ |+-. +..|+ +.++.-+.+||+|.+.++
T Consensus 47 ~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~i~~~~~ 123 (267)
T 3kkz_A 47 KSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM-DDLPFRNEELDLIWSEGA 123 (267)
T ss_dssp TCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCCCCTTCEEEEEESSC
T ss_pred CCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh-hhCCCCCCCEEEEEEcCC
Confidence 36899999999999999987743 133444433 555555444 4322 12233 233322379999999988
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.+. +...+|-++-|+|||||.+++.+
T Consensus 124 ~~~~----------~~~~~l~~~~~~LkpgG~l~~~~ 150 (267)
T 3kkz_A 124 IYNI----------GFERGLNEWRKYLKKGGYLAVSE 150 (267)
T ss_dssp GGGT----------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ceec----------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 8642 46789999999999999999974
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.2e-05 Score=77.40 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=82.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chh----hhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIG----VYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig----~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
+.|||+|||.|+|+..|..... -.|+-.|-. ++|.....+- ++. -+.... ....| .+||++-++-.|.
T Consensus 87 ~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~--~~~l~~~~fD~v~~d~sf~ 162 (291)
T 3hp7_A 87 MITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAE--PVDFTEGLPSFASIDVSFI 162 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCC--GGGCTTCCCSEEEECCSSS
T ss_pred cEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHHHHHHhCcccceecccCceecc--hhhCCCCCCCEEEEEeeHh
Confidence 6899999999999988876542 134445543 7776644321 110 011111 12234 4699999887775
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe---------C-------------ChHHHHHHHHhHhccCceeEEec
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---------D-------------SPEVIDKVSRIANTVRWTAAVHD 572 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r---------d-------------~~~~~~~~~~~~~~~~W~~~~~~ 572 (595)
. +..+|-|+-|+|+|||.+++- + ....++++.+.+...-|.+....
T Consensus 163 s------------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~ 230 (291)
T 3hp7_A 163 S------------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLD 230 (291)
T ss_dssp C------------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred h------------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 2 367999999999999999874 1 01367788888888889876553
Q ss_pred c--CCCCCCCceEEEEEe
Q 007645 573 K--EPGSNGREKILVATK 588 (595)
Q Consensus 573 ~--~~~~~~~~~~l~~~K 588 (595)
. ..|+.+....|+|-+
T Consensus 231 ~spi~g~~gn~e~l~~~~ 248 (291)
T 3hp7_A 231 FSPIQGGHGNIEFLAHLE 248 (291)
T ss_dssp ECSSCCGGGCCCEEEEEE
T ss_pred ECCCCCCCcCHHHHHHhh
Confidence 3 235555545555543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=97.71 E-value=2.1e-05 Score=77.06 Aligned_cols=120 Identities=18% Similarity=0.210 Sum_probs=77.1
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc------hhh-hcccCCCCCCCCCccchhhccCcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL------IGV-YHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl------ig~-~~~wce~f~typrtyDl~H~~~~~ 513 (595)
-.+|||+|||.|.++.+|...-. -+|+-.|-. ..+..+-++.- +-. ..|. +.++.-+.+||+|.+..++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l 156 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL-QDFTPEPDSYDVIWIQWVI 156 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG-GGCCCCSSCEEEEEEESCG
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh-hhcCCCCCCEEEEEEcchh
Confidence 46899999999999999876531 234444433 44444444321 111 1121 1222223589999999888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh---------------HHHHHHHHhHhccCceeEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~---------------~~~~~~~~~~~~~~W~~~~~ 571 (595)
.++. + -.+..+|-|+-|+|+|||.+++.+.. .-.+++++++...-++....
T Consensus 157 ~~~~------~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 157 GHLT------D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GGSC------H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hhCC------H-HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 7653 1 12457899999999999999996521 12567788887777876554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.71 E-value=5e-05 Score=73.58 Aligned_cols=142 Identities=11% Similarity=0.031 Sum_probs=85.5
Q ss_pred eeEEecccc-hhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccc-hhhh-cccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAF-FGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL-IGVY-HDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~-~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-ig~~-~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
.+|||+||| .|.++.+|.... .-+|+-.|-. ..+..+-+ .|+ +-++ .|+ +.+..+| .+||+|-++-.|
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~npp~ 133 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAPPY 133 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECCCC
Confidence 689999999 999998886542 1244444543 44444433 243 2222 221 1244455 899999988666
Q ss_pred ccccCCCC----------CCCCCChhhhHHhhcccccCCcEEEE--eCChHHHHHHHHhHhccCceeEEeccCCCCCCCc
Q 007645 514 SLIKNPGS----------NKNSCSLVDLMVEMDRMLRPEGTVVV--RDSPEVIDKVSRIANTVRWTAAVHDKEPGSNGRE 581 (595)
Q Consensus 514 s~~~~~~~----------~~~~c~~~~~llEmdRiLRP~G~~i~--rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~ 581 (595)
....+... ......+..+|-++-|+|+|||.+++ ....+..+++.+.++...|++.......|.. .-
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~g~~-~~ 212 (230)
T 3evz_A 134 YDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFKVGTR-WR 212 (230)
T ss_dssp C---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEECCCC--CE
T ss_pred cCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEecCCCe-EE
Confidence 43321000 00111136789999999999999998 3455667888888888889877764443332 24
Q ss_pred eEEEEEe
Q 007645 582 KILVATK 588 (595)
Q Consensus 582 ~~l~~~K 588 (595)
.+++.+|
T Consensus 213 ~~l~f~~ 219 (230)
T 3evz_A 213 HSLIFFK 219 (230)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 4666665
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=97.70 E-value=4e-06 Score=79.63 Aligned_cols=112 Identities=15% Similarity=0.096 Sum_probs=72.0
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hhhhcccCCCCCCCC-CccchhhccCccccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGVYHDWCEPFSTYP-RTYDLIHVSGIESLI 516 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~~~wce~f~typ-rtyDl~H~~~~~s~~ 516 (595)
+|||+|||.|.++.+|.+... +|+-.|-. ..+..+-++ |+ +-.+..=.+.++ +| .+||+|.+. +.++
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~--~~~~ 105 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFD-IVADAWEGIVSI--FCHL 105 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBS-CCTTTCSEEEEE--CCCC
T ss_pred CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcC-CCcCCccEEEEE--hhcC
Confidence 899999999999999988753 56666654 555555554 32 111111111222 33 799999974 3322
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC----h-------------HHHHHHHHhHhccCceeEE
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----P-------------EVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~----~-------------~~~~~~~~~~~~~~W~~~~ 570 (595)
..-....+|-++-|+|+|||.+++.+. . --.++++++++ -|++..
T Consensus 106 -------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 106 -------PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp -------CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred -------CHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 223466899999999999999999731 1 12466777776 566544
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.3e-05 Score=77.04 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=64.2
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~H~~~~ 512 (595)
..|||+|||.|.++..|... +. +|+-.|-. ..+..+-++ |+-. +..|. +.++.-+.+||+|++.++
T Consensus 48 ~~vLDiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~ 123 (257)
T 3f4k_A 48 AKIADIGCGTGGQTLFLADYVKG---QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM-DNLPFQNEELDLIWSEGA 123 (257)
T ss_dssp CEEEEETCTTSHHHHHHHHHCCS---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCSSCTTCEEEEEEESC
T ss_pred CeEEEeCCCCCHHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh-hhCCCCCCCEEEEEecCh
Confidence 48999999999999988654 22 44444543 555554443 4322 22233 333322389999999988
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.+. +...+|-|+-|+|||||.+++.+
T Consensus 124 l~~~----------~~~~~l~~~~~~L~pgG~l~~~~ 150 (257)
T 3f4k_A 124 IYNI----------GFERGMNEWSKYLKKGGFIAVSE 150 (257)
T ss_dssp SCCC----------CHHHHHHHHHTTEEEEEEEEEEE
T ss_pred Hhhc----------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 7632 46789999999999999999975
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.70 E-value=2e-05 Score=76.20 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=75.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCC-CCchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccCCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPG 520 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~-~~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~ 520 (595)
.+|||+|||.|.++..|... +-.|. +..+..+-++++--...|. +.++ ++ .+||+|.+..++.+..
T Consensus 49 ~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l~~~~--- 116 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKRGVFVLKGTA-ENLP-LKDESFDFALMVTTICFVD--- 116 (219)
T ss_dssp SCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHTTCEEEECBT-TBCC-SCTTCEEEEEEESCGGGSS---
T ss_pred CcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhcCCEEEEccc-ccCC-CCCCCeeEEEEcchHhhcc---
Confidence 58999999999999999886 22232 2556666666432222222 2232 33 6999999998887553
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEeCCh------------------------HHHHHHHHhHhccCceeEE
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------------------EVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------------------------~~~~~~~~~~~~~~W~~~~ 570 (595)
+...+|-++-|+|+|||.+++.+.. -..+++++++...-++...
T Consensus 117 ------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 117 ------DPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp ------CHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ------CHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 3568999999999999999996311 1245677777777776544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.70 E-value=3e-05 Score=74.31 Aligned_cols=131 Identities=14% Similarity=0.091 Sum_probs=83.3
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc----cchh---hhcccCCCCCCCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~wce~f~typ-rtyDl~H~~~ 511 (595)
..|||+|||.|.++.+|... |- -.|+-.|-. ..+..+-++ |+-. ...|.. .++ +| .+||+|.+..
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~-~~~-~~~~~fD~v~~~~ 114 (219)
T 3dh0_A 39 MTVLDVGTGAGFYLPYLSKMVGEK--GKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEEN-KIP-LPDNTVDFIFMAF 114 (219)
T ss_dssp CEEEESSCTTCTTHHHHHHHHTTT--CEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTT-BCS-SCSSCEEEEEEES
T ss_pred CEEEEEecCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccc-cCC-CCCCCeeEEEeeh
Confidence 58999999999999988543 11 133334433 445544443 3211 112221 222 33 7899999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-------------HHHHHHHHhHhccCceeEEeccCCCCC
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------------EVIDKVSRIANTVRWTAAVHDKEPGSN 578 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-------------~~~~~~~~~~~~~~W~~~~~~~~~~~~ 578 (595)
++.++. +...+|-|+-|+|+|||.+++.+-. .-.++++++++.--++......- +
T Consensus 115 ~l~~~~---------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~-~-- 182 (219)
T 3dh0_A 115 TFHELS---------EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVVEV-G-- 182 (219)
T ss_dssp CGGGCS---------SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEEEE-T--
T ss_pred hhhhcC---------CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEEee-C--
Confidence 988663 3578999999999999999997411 12577888888888886543211 1
Q ss_pred CCceEEEEEec
Q 007645 579 GREKILVATKS 589 (595)
Q Consensus 579 ~~~~~l~~~K~ 589 (595)
....+++++|+
T Consensus 183 ~~~~~~~~~k~ 193 (219)
T 3dh0_A 183 KYCFGVYAMIV 193 (219)
T ss_dssp TTEEEEEEECC
T ss_pred CceEEEEEEec
Confidence 13456777775
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.6e-05 Score=77.23 Aligned_cols=93 Identities=16% Similarity=0.236 Sum_probs=63.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----c-hh-hhcccCCCCCCCCCccchhhccC-ccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L-IG-VYHDWCEPFSTYPRTYDLIHVSG-IES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l-ig-~~~~wce~f~typrtyDl~H~~~-~~s 514 (595)
.+|||+|||.|.++..|... .+|+-.|-. ..+..+-++. . +- ...|..+ + ..|.+||+|-+.. ++.
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-~-~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE-L-ELPEPVDAITILCDSLN 108 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG-C-CCSSCEEEEEECTTGGG
T ss_pred CeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh-c-CCCCCcCEEEEeCCchh
Confidence 68999999999999999887 356656544 5555554442 1 11 1112111 1 2358999999875 666
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+.. +.-....+|-++-|+|+|||.+++
T Consensus 109 ~~~------~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 109 YLQ------TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp GCC------SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hcC------CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 543 334566789999999999999998
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.4e-05 Score=77.63 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=62.3
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhccc-hhhhcccCCCCCC--CCCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGVYHDWCEPFST--YPRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~wce~f~t--yprtyDl~H~~~~~s~~ 516 (595)
..|||+|||.|.++.+|... .. +|+-.|-. ..+..+-++-- .+-..-.+..+.. ++.+||+|.+..++.++
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 122 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL 122 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred CeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence 68999999999999988654 22 33444433 55555544410 0111112222222 23899999999888765
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. .-....+|-|+-|+|+|||.+++.|
T Consensus 123 ~-------~~~~~~~l~~~~~~LkpgG~l~~~~ 148 (234)
T 3dtn_A 123 E-------DEDKKELYKRSYSILKESGIFINAD 148 (234)
T ss_dssp C-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 1122358999999999999999975
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=80.19 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=62.7
Q ss_pred CeeeEEecccchhHHHhhhc---CCCeEEEEeccCCCC-CchhHHhhc-----cchhhhcccC---CCCCCCC------C
Q 007645 441 AIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWC---EPFSTYP------R 502 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~---~~~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~wc---e~f~typ------r 502 (595)
.-.+|||+|||.|.++..|. .... +|+-.|-. ..+..+-++ |...-.+-.+ +.++.-. .
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 112 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFE---QIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQ 112 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCS---EEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCC
Confidence 45789999999999999998 4333 34444443 566655554 3222111111 1222111 6
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+||+|++..++.+ - +...+|-|+-|+|||||.+++
T Consensus 113 ~fD~V~~~~~l~~---------~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 113 KIDMITAVECAHW---------F-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CEEEEEEESCGGG---------S-CHHHHHHHHHHHEEEEEEEEE
T ss_pred CeeEEeHhhHHHH---------h-CHHHHHHHHHHhcCCCcEEEE
Confidence 9999999887763 2 678899999999999999998
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.66 E-value=1.6e-05 Score=77.21 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=65.0
Q ss_pred CeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----chhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----lig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
.-.+|||+|||.|.++..|.....- +|+-.|-. ..+..+-++. +--...|.. .++.-+.+||+|.+..++.+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~-~~~~~~~~fD~v~~~~~l~~ 119 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPDTGITYERADLD-KLHLPQDSFDLAYSSLALHY 119 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCSSSEEEEECCGG-GCCCCTTCEEEEEEESCGGG
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhcccCCceEEEcChh-hccCCCCCceEEEEeccccc
Confidence 3468999999999999999776431 33334433 5555555543 111122222 22322379999999988775
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.. +...+|-|+-|+|+|||.+++..
T Consensus 120 ~~---------~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 120 VE---------DVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp CS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc---------hHHHHHHHHHHhcCcCcEEEEEe
Confidence 42 46789999999999999999964
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=97.66 E-value=2.8e-05 Score=74.81 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchh----hh
Q 007645 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIG----VY 490 (595)
Q Consensus 421 ~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~ 490 (595)
...++++.-.+.+. .. .-..|||+|||.|.|+.+|... +. .+|+-.|-. ..+..+-++ |+-. -+
T Consensus 13 ~~~~~~~~l~~~l~--~~--~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v 86 (217)
T 3jwh_A 13 LNQQRMNGVVAALK--QS--NARRVIDLGCGQGNLLKILLKDSFF--EQITGVDVSYRSLEIAQERLDRLRLPRNQWERL 86 (217)
T ss_dssp HHHHHHHHHHHHHH--HT--TCCEEEEETCTTCHHHHHHHHCTTC--SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTE
T ss_pred HHHHHHHHHHHHHH--hc--CCCEEEEeCCCCCHHHHHHHhhCCC--CEEEEEECCHHHHHHHHHHHHHhcCCcccCcce
Confidence 44445444444333 12 2358999999999999999764 21 133444433 555555444 2210 11
Q ss_pred cccCCCC--CCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 491 HDWCEPF--STYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 491 ~~wce~f--~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
.-.+..+ ...+ .+||+|-+..++.++. .-.+..+|-|+-|+|+|||.+++.+..
T Consensus 87 ~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 87 QLIQGALTYQDKRFHGYDAATVIEVIEHLD-------LSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp EEEECCTTSCCGGGCSCSEEEEESCGGGCC-------HHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred EEEeCCcccccccCCCcCEEeeHHHHHcCC-------HHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 1111112 2222 6999999999888653 224567899999999999988886544
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00018 Score=80.09 Aligned_cols=120 Identities=16% Similarity=0.109 Sum_probs=83.5
Q ss_pred HHHHHHHhhcccc--CCCcceEEEECCCCcHHHHHHhhcC--CceEEEEeecCcHHHHHHHHHc----CC---CeEEEEc
Q 007645 185 KYIDKLKQYIPIT--GGTLRTALDMGCGVASFGGSMLSEN--ILTLSFAPRDSHKAQIQFALER----GI---PAFVAML 253 (595)
Q Consensus 185 ~yi~~L~~~l~~~--~g~~r~VLDIGCGtG~~a~~La~~g--v~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~ 253 (595)
..++.+.+++... .....+|||.+||+|.|...+++.- .....+.|+|+++.+.+.|+.+ |+ +..+..+
T Consensus 204 ~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 204 PVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred HHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEec
Confidence 3455555555421 1234589999999999988776651 1235899999999999998764 55 3567788
Q ss_pred ccccC--C-CCCCceeEEEEcCCCcc-cc------c--------------C-HHHHHHHHHhhcC-CCcEEEEEcCC
Q 007645 254 GTRRL--P-FPAFSFDIVHCSRCLIP-FT------A--------------Y-NATYLIEVDRLLR-PGGYLVISGPP 304 (595)
Q Consensus 254 d~~~L--P-fpd~sFDlV~~s~vL~h-~~------~--------------d-~~~~L~Ei~RvLR-PGG~lvls~p~ 304 (595)
|+... | .....||+|+++--+.. |. . + .-.++..+.+.|+ |||++.++.|.
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred ceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 86655 4 45678999999754421 10 0 0 1247899999999 99999999874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.5e-05 Score=76.69 Aligned_cols=85 Identities=11% Similarity=0.000 Sum_probs=61.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d~~~LPfp 261 (595)
..++.+.+.+....+. +|||||||+|.++. +.. +. ...++++|+++.+++.++++.. ++.+..+|+..++++
T Consensus 8 ~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 8 FVIDSIVSAINPQKGQ--AMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHHHHHCCCTTC--CEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred HHHHHHHHhcCCCCcC--EEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence 4566677766655544 89999999999999 654 32 1128889999999999998743 578888998888765
Q ss_pred C-----CceeEEEEcCCC
Q 007645 262 A-----FSFDIVHCSRCL 274 (595)
Q Consensus 262 d-----~sFDlV~~s~vL 274 (595)
+ +..|.|+++...
T Consensus 83 ~~~~~~~~~~~vvsNlPY 100 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNLPY 100 (252)
T ss_dssp HHHHHHTSCEEEEEECCT
T ss_pred HhhcccCCceEEEECCCC
Confidence 3 234778877543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.5e-05 Score=76.75 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=64.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-------hhhhcccCCCCCCCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-------IGVYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-------ig~~~~wce~f~typrtyDl~H~~ 510 (595)
..|||+|||.|.++.+|..... +|+-.|-. ..+..+-++ |+ +-....=.+.++.-+.+||+|-+.
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASKGY---SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CeEEEECCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 4799999999999999987743 45555543 555555442 32 111111112222223799999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++.+.. +.-....+|-|+-|+|||||.+++.+
T Consensus 109 ~~l~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 109 AFLTSVP------DPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp SCGGGCC------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhhcCC------CHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 8888664 22223379999999999999999974
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.9e-05 Score=77.89 Aligned_cols=100 Identities=13% Similarity=0.115 Sum_probs=65.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----c--hhhhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L--IGVYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l--ig~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
..|||+|||.|.++.+|.+... -+|+-.+-+ ..+..+-+++ . .=+..||-+-...+| .+||.|..+...+
T Consensus 62 ~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~ 139 (236)
T 3orh_A 62 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 139 (236)
T ss_dssp EEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeec
Confidence 5799999999999999987653 244445544 6666665543 1 011233333333445 7899998776665
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+. .++.-..+.++=|+-|+|||||.+++-
T Consensus 140 ~~~----~~~~~~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 140 SEE----TWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp BGG----GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccc----hhhhcchhhhhhhhhheeCCCCEEEEE
Confidence 442 123334557888999999999999984
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.63 E-value=2.6e-05 Score=73.96 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=74.2
Q ss_pred eeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc----cc--hhhhcccCCCCCC---CCCccchhhc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GL--IGVYHDWCEPFST---YPRTYDLIHV 509 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Gl--ig~~~~wce~f~t---yprtyDl~H~ 509 (595)
=..|||+|||.|.++.+|... .. +|+-.|-. ..+..+-++ |+ -=+..|..+.+.. .+.+||+|-+
T Consensus 31 ~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 107 (215)
T 4dzr_A 31 GTRVIDVGTGSGCIAVSIALACPGV---SVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS 107 (215)
T ss_dssp TEEEEEEESSBCHHHHHHHHHCTTE---EEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred CCEEEEecCCHhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence 368999999999999888654 21 23333321 222222211 21 1122333333321 2378999998
Q ss_pred cCccccccCCCC---C----CCCCC----------hhhhHHhhcccccCCcE-EEEeCChHHHHHHHHhHh--ccCceeE
Q 007645 510 SGIESLIKNPGS---N----KNSCS----------LVDLMVEMDRMLRPEGT-VVVRDSPEVIDKVSRIAN--TVRWTAA 569 (595)
Q Consensus 510 ~~~~s~~~~~~~---~----~~~c~----------~~~~llEmdRiLRP~G~-~i~rd~~~~~~~~~~~~~--~~~W~~~ 569 (595)
+--|....+... . ..... +..++-++-|+|+|||. +++.-.....+.+.+++. .-.|...
T Consensus 108 npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~ 187 (215)
T 4dzr_A 108 NPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFRV 187 (215)
T ss_dssp CCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEEC
T ss_pred CCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCceE
Confidence 755532210000 0 00111 16788999999999999 777544444566777766 5555432
Q ss_pred EeccCCCCCCCceEEEEEec
Q 007645 570 VHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 570 ~~~~~~~~~~~~~~l~~~K~ 589 (595)
..-. ...+.+++++++|.
T Consensus 188 ~~~~--~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 188 RKVK--DLRGIDRVIAVTRE 205 (215)
T ss_dssp CEEE--CTTSCEEEEEEEEC
T ss_pred EEEE--ecCCCEEEEEEEEc
Confidence 2211 12235788888874
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.61 E-value=4.8e-05 Score=74.70 Aligned_cols=95 Identities=15% Similarity=0.099 Sum_probs=63.5
Q ss_pred CeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
.-.+|||+|||.|.++..|.+. .. +|+-.|-. ..+..+-++. +--...|. +.++ -+.+||+|++..++.+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADRLPNTNFGKADL-ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHHSTTSEEEECCT-TTCC-CSSCEEEEEEESCGGG
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHhCCCcEEEECCh-hhcC-ccCCcCEEEEeCchhh
Confidence 3468999999999999888653 21 22333333 5555555552 11111121 2333 3489999999888875
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.. +...+|-|+-|+|+|||.+++..
T Consensus 108 ~~---------~~~~~l~~~~~~L~pgG~l~~~~ 132 (259)
T 2p35_A 108 VP---------DHLAVLSQLMDQLESGGVLAVQM 132 (259)
T ss_dssp ST---------THHHHHHHHGGGEEEEEEEEEEE
T ss_pred CC---------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 42 46789999999999999999974
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=82.86 Aligned_cols=130 Identities=14% Similarity=0.076 Sum_probs=81.1
Q ss_pred cceEEEECCCCcHHHHHHhhcC--CceEEEEeecCcHHHHHHH--HHc--------CCCe-EEEEcccccC-CCCCCcee
Q 007645 201 LRTALDMGCGVASFGGSMLSEN--ILTLSFAPRDSHKAQIQFA--LER--------GIPA-FVAMLGTRRL-PFPAFSFD 266 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~g--v~~~~v~~vD~s~~~l~~A--~er--------g~~~-~~~~~d~~~L-Pfpd~sFD 266 (595)
..+|||.|||+|.++..++++. .....+.++|+++.+++.| +.+ +... .+...+.... +...+.||
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFD 401 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVS 401 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEE
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCC
Confidence 4589999999999999988762 2234688999999999988 322 2222 3333333332 23457899
Q ss_pred EEEEcCCCcc-ccc--------------------------C-HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHH
Q 007645 267 IVHCSRCLIP-FTA--------------------------Y-NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQ 318 (595)
Q Consensus 267 lV~~s~vL~h-~~~--------------------------d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~ 318 (595)
+|+++--+.. +.. + ...++..+.+.|+|||++++..|.............++
T Consensus 402 VVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kkLR 481 (878)
T 3s1s_A 402 VVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKAFR 481 (878)
T ss_dssp EEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHHHH
T ss_pred EEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHHHH
Confidence 9999876532 110 0 12467889999999999999988432211111234455
Q ss_pred H-HHHHcCcEEEE
Q 007645 319 A-VARALCYELIA 330 (595)
Q Consensus 319 ~-la~~~~w~~v~ 330 (595)
+ +++......+.
T Consensus 482 k~LLe~~~I~aII 494 (878)
T 3s1s_A 482 EFLVGNFGLEHIF 494 (878)
T ss_dssp HHHTTTTCEEEEE
T ss_pred HHHHhCCCeEEEE
Confidence 5 34444444443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.5e-05 Score=76.46 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=70.9
Q ss_pred cHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH---cCCCeEEEEcccccC
Q 007645 182 GADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE---RGIPAFVAMLGTRRL 258 (595)
Q Consensus 182 ~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e---rg~~~~~~~~d~~~L 258 (595)
.+-+++ +|.+......+ .+|||+|||+|.|+.+++++. .+.++.++|++..+...+.. .+.++.....++.-.
T Consensus 75 AAfKL~-ei~eK~~Lk~~--~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~ 150 (282)
T 3gcz_A 75 GSAKLR-WMEERGYVKPT--GIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVF 150 (282)
T ss_dssp HHHHHH-HHHHTTSCCCC--EEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGG
T ss_pred HHHHHH-HHHHhcCCCCC--CEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccccccCCCceEEeeCCcchh
Confidence 344444 44444444443 489999999999999988653 34567788886543222211 122333333333333
Q ss_pred CCCCCceeEEEEcCCCc---ccccCHH--HHHHHHHhhcCCC--cEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLI---PFTAYNA--TYLIEVDRLLRPG--GYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~---h~~~d~~--~~L~Ei~RvLRPG--G~lvls~ 302 (595)
.++.+.+|+|+|-.+.. ++.+... .+|.-+.++|+|| |.|++-.
T Consensus 151 ~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 151 NMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp GSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred hcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 45678899999977663 0111111 3466667899999 9999976
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=68.00 Aligned_cols=132 Identities=11% Similarity=0.024 Sum_probs=82.5
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccCccccccCCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGS 521 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~ 521 (595)
.|||+|||.|.++.+|...- +|+-.|-. ..+.. ...+--+..|..++ ++ .+||+|-++-.|....++..
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~--~~~~~~~~~d~~~~---~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES--HRGGNLVRADLLCS---INQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT--CSSSCEEECSTTTT---BCGGGCSEEEECCCCBTTCCCTT
T ss_pred eEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc--ccCCeEEECChhhh---cccCCCCEEEECCCCccCCcccc
Confidence 89999999999999998875 66666644 44443 22222223333333 34 89999999877764331110
Q ss_pred CCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCceeEEeccCCCCCCCceEEEEE
Q 007645 522 NKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKILVAT 587 (595)
Q Consensus 522 ~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~ 587 (595)
.........++-++=|.| |||.+++.. .....+++.++++..-|+.......... .|++++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~~~--~e~~~~~~ 160 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRKIL--GETVYIIK 160 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEECS--SSEEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeeccC--CceEEEEE
Confidence 011223345677777777 999999964 3345678888888888887655333332 45555544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.57 E-value=3.9e-05 Score=86.96 Aligned_cols=98 Identities=17% Similarity=0.100 Sum_probs=66.3
Q ss_pred cceEEEECCCCcHHHHHH---hh-cC--------CceEEEEeecCcHHHHHHHHH---cCC--CeEEEEcccccCCCC--
Q 007645 201 LRTALDMGCGVASFGGSM---LS-EN--------ILTLSFAPRDSHKAQIQFALE---RGI--PAFVAMLGTRRLPFP-- 261 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~L---a~-~g--------v~~~~v~~vD~s~~~l~~A~e---rg~--~~~~~~~d~~~LPfp-- 261 (595)
...|||||||+|.+.... ++ .+ .....+.++|-++.++...+. ++. .+.++..+++.+..|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~ 489 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK 489 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence 347999999999875321 11 12 134588899999866544332 343 478888888887663
Q ss_pred ---CCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEE
Q 007645 262 ---AFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 262 ---d~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lv 299 (595)
.+.+|+|+|-..- .+. +-....|..+.|.|||||.++
T Consensus 490 ~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 490 DRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred cCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEEE
Confidence 4789999985542 222 223468888899999999764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0002 Score=70.90 Aligned_cols=130 Identities=17% Similarity=0.205 Sum_probs=76.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-hh-----hhcccC-CCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-IG-----VYHDWC-EPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-ig-----~~~~wc-e~f~typrtyDl~H~~~~~s 514 (595)
..|||+|||.|+|+..|.....- .|+-.|-. +.|..+..+.- ++ -+...+ +.+.. .-||.+-++-+|+
T Consensus 39 ~~VLDiGcGtG~~t~~la~~g~~--~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~~~D~v~~ 114 (232)
T 3opn_A 39 KTCLDIGSSTGGFTDVMLQNGAK--LVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ--GRPSFTSIDVSFI 114 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCS--EEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--CCCSEEEECCSSS
T ss_pred CEEEEEccCCCHHHHHHHhcCCC--EEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--CCCCEEEEEEEhh
Confidence 57999999999999998776531 44555543 66666554321 00 011111 22222 0134444343443
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC------------------h----HHHHHHHHhHhccCceeEEec
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------------P----EVIDKVSRIANTVRWTAAVHD 572 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~------------------~----~~~~~~~~~~~~~~W~~~~~~ 572 (595)
.+..+|-|+-|+|+|||.+++--+ . ...+++.+++...-|++...+
T Consensus 115 ------------~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~ 182 (232)
T 3opn_A 115 ------------SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT 182 (232)
T ss_dssp ------------CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred ------------hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence 246799999999999999987511 1 245677788888888876654
Q ss_pred cCC--CCCCC-ceEEEEEe
Q 007645 573 KEP--GSNGR-EKILVATK 588 (595)
Q Consensus 573 ~~~--~~~~~-~~~l~~~K 588 (595)
... ++.+. |-++.++|
T Consensus 183 ~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 183 FSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp ECSSCBTTTBCCEEEEEEE
T ss_pred EccCCCCCCCHHHHHHHhh
Confidence 332 33333 44555555
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=97.54 E-value=7.2e-05 Score=72.66 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-Cc----hhHHhhc-cchhhhcccCCC--CCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-ST----LSVIYDR-GLIGVYHDWCEP--FSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~----l~~i~eR-Glig~~~~wce~--f~typrtyDl~H~~~~ 512 (595)
.+|||+|||.|.++..|.+. .- .|+-.|-. .- +..+-.+ ++.-+..|-.+. +..++.+||+|-++-
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~---~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~- 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEG---IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI- 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTS---EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC-
T ss_pred CEEEEECCcCCHHHHHHHHHcCCC---EEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEec-
Confidence 47999999999998877542 11 23333332 21 2222222 122222333332 122357999998761
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. ..-....+|-|+-|+|||||.+++.
T Consensus 135 -~---------~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 135 -A---------QKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp -C---------STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -c---------ChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 1112334588999999999999986
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00011 Score=72.34 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=79.1
Q ss_pred eeEEecccchhHHHhhhc--CCCeEEEEeccCCCC-CchhHHhh----ccc--hhhhcccCCCCC---CCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFS---TYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~--~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~wce~f~---typrtyDl~H~~ 510 (595)
.+|||+|||.|.++..|. .... .|+-.|-. ..+.++-+ .|+ +-+++.=.+.++ ..+.+||+|.+.
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHL---HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 589999999998887775 3332 23444433 34443332 244 222221111222 124789999975
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC---hHHHHHHHHhHhccCceeEEecc--CCCCCCCceEEE
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS---PEVIDKVSRIANTVRWTAAVHDK--EPGSNGREKILV 585 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~---~~~~~~~~~~~~~~~W~~~~~~~--~~~~~~~~~~l~ 585 (595)
.+ .....++-++-|+|+|||.+++-+. .+.+.++.+.++...++...... -+...+.-.+++
T Consensus 149 ~~-------------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~ 215 (240)
T 1xdz_A 149 AV-------------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMV 215 (240)
T ss_dssp CC-------------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred cc-------------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEEEEecCCCCCceEEEE
Confidence 52 3467799999999999999998643 34456666667777776543321 122223445677
Q ss_pred EEeccCC
Q 007645 586 ATKSLWK 592 (595)
Q Consensus 586 ~~K~~w~ 592 (595)
++|.=.+
T Consensus 216 ~~k~~~~ 222 (240)
T 1xdz_A 216 IRKIKNT 222 (240)
T ss_dssp EEECSCC
T ss_pred EEecCCC
Confidence 7776433
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00017 Score=71.74 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=79.5
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cch---hhh-cccCCCCCCCC-CccchhhccC
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLI---GVY-HDWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gli---g~~-~~wce~f~typ-rtyDl~H~~~ 511 (595)
=.+|||+|||.|.++..|....-. +|+-.|-. ..+..+-++ |+- -++ .|..+....+| .+||+|-++-
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np 127 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP 127 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred CCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence 358999999999999998776432 55555544 444443332 432 112 23332222343 8999999876
Q ss_pred ccccc-----cCC------CCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEE
Q 007645 512 IESLI-----KNP------GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 512 ~~s~~-----~~~------~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~ 570 (595)
.|... ..+ ......+.++.++-++-|+|||||.+++--..+...++...+....|....
T Consensus 128 Py~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 128 PYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp CC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHHHHHHHHHTTEEEEE
T ss_pred CCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHHHHHHHHHCCCceEE
Confidence 55322 000 001123567789999999999999999976666777888888877887643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0001 Score=66.96 Aligned_cols=131 Identities=16% Similarity=0.185 Sum_probs=72.4
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCC-------CC-Cccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFST-------YP-RTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~t-------yp-rtyDl~H~ 509 (595)
.+|||+|||.|.++.+|... .|..+-+.| -. . + + .+--...|..+ ++. +| .+||+|.+
T Consensus 24 ~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~-~-~----~-~~~~~~~d~~~-~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 24 MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD-P-I----V-GVDFLQGDFRD-ELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC-C-C----T-TEEEEESCTTS-HHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc-c-c----C-cEEEEEccccc-chhhhhhhccCCCCceeEEEE
Confidence 48999999999999988543 344443333 11 1 1 1 11111112221 110 33 78999998
Q ss_pred cCccccccCCCCCCCC--CC------hhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCceeEEe--ccCCCCC
Q 007645 510 SGIESLIKNPGSNKNS--CS------LVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWTAAVH--DKEPGSN 578 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~--c~------~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~~~~~--~~~~~~~ 578 (595)
+..+.... .. -. ...+|-++-|+|+|||.+++.... .-...+.+.... .|+.... .......
T Consensus 95 ~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 167 (180)
T 1ej0_A 95 DMAPNMSG------TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPDSSRAR 167 (180)
T ss_dssp CCCCCCCS------CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCTTSCTT
T ss_pred CCCccccC------CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH-hhhhEEeecCCccccc
Confidence 87765321 10 00 157899999999999999996321 122333333333 3654332 2223344
Q ss_pred CCceEEEEEec
Q 007645 579 GREKILVATKS 589 (595)
Q Consensus 579 ~~~~~l~~~K~ 589 (595)
..|..+++++.
T Consensus 168 ~~~~~~~~~~~ 178 (180)
T 1ej0_A 168 SREVYIVATGR 178 (180)
T ss_dssp CCEEEEEEEEE
T ss_pred CceEEEEEccC
Confidence 56778887763
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.52 E-value=7e-05 Score=75.64 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=66.7
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH-------HHHc----C---CCeEEEEcc
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF-------ALER----G---IPAFVAMLG 254 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~-------A~er----g---~~~~~~~~d 254 (595)
.+.+.+....+...+|||+|||+|..+..++.++. .++++|.++.+.+. +.++ + .++.+...|
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~---~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D 153 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECC
Confidence 44555555544224899999999999999999854 58888999975433 3222 1 246788888
Q ss_pred ccc-CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCc
Q 007645 255 TRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGG 296 (595)
Q Consensus 255 ~~~-LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG 296 (595)
... ++....+||+|++...+.+ . ....++++..++||+.+
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~-~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPH-K-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC-C-CC-----HHHHHHHHHS
T ss_pred HHHHHHhCcccCCEEEEcCCCCC-c-ccchHHHHHHHHHHHhh
Confidence 655 3422347999999887744 2 22356777778887755
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=97.51 E-value=5.8e-05 Score=74.03 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=62.0
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hh-hhcccCCCCCCCCCccchhhccCccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IG-VYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig-~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
-.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ |+ +- +..|..+ ++ .+.+||+|.+.....
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~v~~~~~~~ 116 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE-IA-FKNEFDAVTMFFSTI 116 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG-CC-CCSCEEEEEECSSGG
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhh-cc-cCCCccEEEEcCCch
Confidence 46899999999999999977653 55556544 555554433 32 11 1122222 22 357899998753322
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+. +.-....+|-++-|+|+|||.+|+.
T Consensus 117 ~~~------~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 117 MYF------DEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp GGS------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC------CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 222 2224567899999999999999985
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=8.4e-05 Score=76.68 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=67.1
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcC--CCeEEEEeccCCCCCchhHHh----hccchh----hhcccCCCCCCCCCccc
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTLSVIY----DRGLIG----VYHDWCEPFSTYPRTYD 505 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~~~l~~i~----eRGlig----~~~~wce~f~typrtyD 505 (595)
.+......+|+|+|||.|.++.+|.+ ..+-+ +-.|-+..+..+- +.|+-+ +-+|.. ...|..||
T Consensus 164 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~p~~~D 237 (332)
T 3i53_A 164 KYDWAALGHVVDVGGGSGGLLSALLTAHEDLSG---TVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF---DPLPAGAG 237 (332)
T ss_dssp SSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---SCCCCSCS
T ss_pred hCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeE---EEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC---CCCCCCCc
Confidence 34556678999999999999998864 22222 1123333444333 234422 223333 34556899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
+|.+.+++.+|. .-....+|-++=|.|+|||+++|.|.
T Consensus 238 ~v~~~~vlh~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e~ 275 (332)
T 3i53_A 238 GYVLSAVLHDWD-------DLSAVAILRRCAEAAGSGGVVLVIEA 275 (332)
T ss_dssp EEEEESCGGGSC-------HHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEEEehhhccCC-------HHHHHHHHHHHHHhcCCCCEEEEEee
Confidence 999999998774 11245799999999999999999753
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00013 Score=69.52 Aligned_cols=144 Identities=15% Similarity=0.129 Sum_probs=86.1
Q ss_pred cccChhhhhhhhhhHHHHHHHH-HHHhhhccCCCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhc
Q 007645 408 MKNGYDVFEADSRRWRRRVAYY-KNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDR 484 (595)
Q Consensus 408 ~~~~~~~f~~d~~~w~~~v~~y-~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eR 484 (595)
.|+..+.|..+...=++.+... ...+. +.. -.+|||+|||.|.++..|...- - -+|+-.|-. ..+..+-++
T Consensus 10 ~g~~d~~f~~~g~~~~~~i~~~~l~~l~--~~~--~~~vLDiG~G~G~~~~~la~~~~~--~~v~~vD~s~~~~~~a~~~ 83 (204)
T 3e05_A 10 GIDDDEFATAKKLITKQEVRAVTLSKLR--LQD--DLVMWDIGAGSASVSIEASNLMPN--GRIFALERNPQYLGFIRDN 83 (204)
T ss_dssp CCCGGGSCCCTTTSCCHHHHHHHHHHTT--CCT--TCEEEEETCTTCHHHHHHHHHCTT--SEEEEEECCHHHHHHHHHH
T ss_pred CCCCcHHhccCCcCChHHHHHHHHHHcC--CCC--CCEEEEECCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHH
Confidence 4556667776555433444322 12222 233 3689999999999998886542 1 123344433 455554443
Q ss_pred ----cc--hh-hhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHH
Q 007645 485 ----GL--IG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDK 556 (595)
Q Consensus 485 ----Gl--ig-~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~ 556 (595)
|+ +- +..|..+.+... .+||+|-++..+. ....+|-|+-|+|+|||.+++.. ..+..++
T Consensus 84 ~~~~~~~~v~~~~~d~~~~~~~~-~~~D~i~~~~~~~------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 150 (204)
T 3e05_A 84 LKKFVARNVTLVEAFAPEGLDDL-PDPDRVFIGGSGG------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTK 150 (204)
T ss_dssp HHHHTCTTEEEEECCTTTTCTTS-CCCSEEEESCCTT------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHH
T ss_pred HHHhCCCcEEEEeCChhhhhhcC-CCCCEEEECCCCc------------CHHHHHHHHHHhcCCCeEEEEEecccccHHH
Confidence 33 11 112332333222 5799987554332 45679999999999999999984 3456777
Q ss_pred HHHhHhccCceeEE
Q 007645 557 VSRIANTVRWTAAV 570 (595)
Q Consensus 557 ~~~~~~~~~W~~~~ 570 (595)
+.++++...|+...
T Consensus 151 ~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 151 AVEFLEDHGYMVEV 164 (204)
T ss_dssp HHHHHHHTTCEEEE
T ss_pred HHHHHHHCCCceeE
Confidence 77887777775443
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=97.47 E-value=4.4e-05 Score=80.20 Aligned_cols=99 Identities=10% Similarity=0.199 Sum_probs=64.5
Q ss_pred CeeeEEecccchhHHHhhhcC--CCeEEEEeccCCCCCchhHHhhc----cchh----hhcccCCCCCCCCCccchhhcc
Q 007645 441 AIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~H~~ 510 (595)
..+.|+|+|||.|.++.+|.+ ..+ .++-.|-+..+..+-++ |+-+ +-+|.-+.-..+|.+||+|.+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~ 255 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEV---EVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTC---EEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCC---EEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEe
Confidence 468999999999999999965 232 23333334444444333 4322 1223221100367899999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++-+|. + -....+|-++-|.|+|||.++|.|
T Consensus 256 ~vlh~~~------~-~~~~~~l~~~~~~L~pgG~l~i~e 287 (363)
T 3dp7_A 256 QFLDCFS------E-EEVISILTRVAQSIGKDSKVYIME 287 (363)
T ss_dssp SCSTTSC------H-HHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred chhhhCC------H-HHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9988774 1 133468999999999999999864
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=4.3e-05 Score=74.79 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=61.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----c-hh-hhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L-IG-VYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l-ig-~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
..|||+|||.|.++..|.....- +|+-.|-. ..+..+-++. . +- +..|+.+....+| .+||+|.++ .|+
T Consensus 62 ~~vLDiGcGtG~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d-~~~ 138 (236)
T 1zx0_A 62 GRVLEVGFGMAIAASKVQEAPID--EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYD-TYP 138 (236)
T ss_dssp EEEEEECCTTSHHHHHHHTSCEE--EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEEC-CCC
T ss_pred CeEEEEeccCCHHHHHHHhcCCC--eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEEC-Ccc
Confidence 57999999999999999775532 55555554 6666555543 1 11 1112221112234 799999873 122
Q ss_pred -cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 -LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 -~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
...+ -+.-..+.+|-|+-|+|||||.+++-+
T Consensus 139 ~~~~~----~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 139 LSEET----WHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CBGGG----TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cchhh----hhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 1210 111223467999999999999999865
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5e-05 Score=76.47 Aligned_cols=102 Identities=8% Similarity=0.123 Sum_probs=64.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-Cccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~ 507 (595)
++.+ -+|||+|||.|.++.+|... += .+|+-.|-. .-|..+-+| |+..-+.-.|.-+..+| ..||+|
T Consensus 68 ~~~~--~~vLDlGcGtG~~~~~la~~~~~~~--~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v 143 (261)
T 4gek_A 68 VQPG--TQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMV 143 (261)
T ss_dssp CCTT--CEEEEETCTTTHHHHHHHHTCCSSS--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEE
T ss_pred CCCC--CEEEEEeCCCCHHHHHHHHhcCCCC--CEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccc
Confidence 3444 37999999999998888542 21 133444433 555554443 44322222233444555 679999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
-+..++.+.. .-....+|-||-|+|||||.+|+.|
T Consensus 144 ~~~~~l~~~~-------~~~~~~~l~~i~~~LkpGG~lii~e 178 (261)
T 4gek_A 144 VLNFTLQFLE-------PSERQALLDKIYQGLNPGGALVLSE 178 (261)
T ss_dssp EEESCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeeeeeeecC-------chhHhHHHHHHHHHcCCCcEEEEEe
Confidence 9877765432 1123468999999999999999975
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00015 Score=74.54 Aligned_cols=100 Identities=21% Similarity=0.206 Sum_probs=65.5
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHHhhc----cc----hhhhcccCCCCCCCCCccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDR----GL----IGVYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i~eR----Gl----ig~~~~wce~f~typrtyDl~ 507 (595)
+.... .+|+|+|||.|.++.+|... |-. .++-.|-+..+..+-++ |+ --+-+|..+ .+|..||+|
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 237 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSA--RGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ---EVPSNGDIY 237 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTC--EEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTT---CCCSSCSEE
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCC---CCCCCCCEE
Confidence 34445 89999999999999998643 211 22223333444443332 32 112334333 367889999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+..++.+|. .-....+|-++-|.|+|||.++|.|
T Consensus 238 ~~~~vl~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e 272 (334)
T 2ip2_A 238 LLSRIIGDLD-------EAASLRLLGNCREAMAGDGRVVVIE 272 (334)
T ss_dssp EEESCGGGCC-------HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred EEchhccCCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999998773 1123579999999999999999974
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00012 Score=70.31 Aligned_cols=118 Identities=8% Similarity=0.061 Sum_probs=74.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-c--------------hhhhcccCCCCCCCC----C
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-L--------------IGVYHDWCEPFSTYP----R 502 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-l--------------ig~~~~wce~f~typ----r 502 (595)
..|||+|||.|.++..|.+... +|+-.|-. .-|..+-+|- + ..-..-.|.-+...| .
T Consensus 24 ~~vLD~GCG~G~~~~~la~~g~---~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 100 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG 100 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred CEEEEeCCCCcHhHHHHHHCCC---eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence 4799999999999999977542 56666644 6666666551 1 011111222333344 5
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcE--EEEeCCh----------HHHHHHHHhHhccCceeEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGT--VVVRDSP----------EVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~--~i~rd~~----------~~~~~~~~~~~~~~W~~~~ 570 (595)
+||+|-+..+|.+.. ......++-||-|+|||||. ++.-+.. --.++++++... .|++..
T Consensus 101 ~fD~v~~~~~l~~l~-------~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~ 172 (203)
T 1pjz_A 101 HCAAFYDRAAMIALP-------ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTK 172 (203)
T ss_dssp SEEEEEEESCGGGSC-------HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEE
T ss_pred CEEEEEECcchhhCC-------HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEE
Confidence 899999887776542 22344688999999999998 3332211 124678887777 787655
Q ss_pred e
Q 007645 571 H 571 (595)
Q Consensus 571 ~ 571 (595)
.
T Consensus 173 ~ 173 (203)
T 1pjz_A 173 V 173 (203)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00014 Score=76.99 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhH----Hhhccch---hhhcccCCCC
Q 007645 425 RVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV----IYDRGLI---GVYHDWCEPF 497 (595)
Q Consensus 425 ~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~----i~eRGli---g~~~~wce~f 497 (595)
+...|.+.+...+....=.+|||+|||.|.++..|.+... -.|+-.|..+.+.. +-+.|+- -+++.=.+.+
T Consensus 47 r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 124 (376)
T 3r0q_C 47 RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDI 124 (376)
T ss_dssp HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhc
Confidence 4455666554333333336899999999999888876532 13333333333333 3334442 2222112222
Q ss_pred CCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 498 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 498 ~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. +|..||+|.+..+..... ..-.+..+|-+++|+|+|||.+|+.
T Consensus 125 ~-~~~~~D~Iv~~~~~~~l~------~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 125 S-LPEKVDVIISEWMGYFLL------RESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp C-CSSCEEEEEECCCBTTBT------TTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred C-cCCcceEEEEcChhhccc------chHHHHHHHHHHHhhCCCCeEEEEe
Confidence 2 458999999865333221 2234667899999999999999875
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00013 Score=78.38 Aligned_cols=67 Identities=10% Similarity=0.017 Sum_probs=54.4
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc------CC-CeEEEEcccccC-CC-CCCceeEEEEc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER------GI-PAFVAMLGTRRL-PF-PAFSFDIVHCS 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er------g~-~~~~~~~d~~~L-Pf-pd~sFDlV~~s 271 (595)
.+|||+|||+|..+..|+..+ ..++++|+++.+++.|+++ +. ++.+.++|+... +. ++++||+|++.
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 489999999999999998875 3788999999999999876 54 478888887663 32 34689999985
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=5.8e-05 Score=79.05 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=62.1
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhH----Hhhccchh---hhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV----IYDRGLIG---VYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~----i~eRGlig---~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
.+|||+|||.|.++..|.+.+.. .|+-.|....+.. +-+.|+-. .++.-.+.+ .+| .+||+|.+..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~--~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV-ELPVEKVDIIISEWMGY 144 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-CCSSSCEEEEEECCCBB
T ss_pred CEEEEEeccchHHHHHHHHCCCC--EEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHc-cCCCCceEEEEEccccc
Confidence 57999999999999998776431 2233333223333 33345532 222222223 355 8999999876554
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
... ..-.+..+|-+++|+|+|||.+|..
T Consensus 145 ~l~------~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLF------YESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBT------BTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccc------CchhHHHHHHHHHHhCCCCCEEccc
Confidence 332 3356778999999999999999743
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=4.9e-05 Score=77.71 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=63.9
Q ss_pred CCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchhh----hcccCCCCCCCC-Cccchhh
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGV----YHDWCEPFSTYP-RTYDLIH 508 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~----~~~wce~f~typ-rtyDl~H 508 (595)
..-..|||+|||.|.++..|... .. .|+-.|-. ..+..+-+ .|+-+- ..|. +.++ +| .+||+|.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~-~~~~~fD~V~ 190 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM-LDTP-FDKGAVTASW 190 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-TSCC-CCTTCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh-hcCC-CCCCCEeEEE
Confidence 33468999999999999998764 32 34444433 55554444 343221 1122 1222 44 8999999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+..++.+. +...+|-|+-|+|||||.+++.
T Consensus 191 ~~~~l~~~----------~~~~~l~~~~~~LkpgG~l~~~ 220 (312)
T 3vc1_A 191 NNESTMYV----------DLHDLFSEHSRFLKVGGRYVTI 220 (312)
T ss_dssp EESCGGGS----------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCchhhC----------CHHHHHHHHHHHcCCCcEEEEE
Confidence 98887643 2888999999999999999986
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=9.3e-05 Score=74.92 Aligned_cols=113 Identities=11% Similarity=0.127 Sum_probs=73.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCC--CCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTY--PRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~ty--prtyDl~H~~~~~s~ 515 (595)
..|||+|||.|+|+.++...--- .|+-.|-. ..+..+-++ |+-....-.|.-...+ +.+||+|.++..+.
T Consensus 127 ~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~~- 203 (278)
T 2frn_A 127 ELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVR- 203 (278)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCSS-
T ss_pred CEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCchh-
Confidence 57999999999999888543211 34444543 445444332 5433121122222222 47999997654332
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-------hHHHHHHHHhHhccCceeEE
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-------PEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-------~~~~~~~~~~~~~~~W~~~~ 570 (595)
...++-++-|+|+|||.+++.+. .+..+++.+.+....|++..
T Consensus 204 ------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 204 ------------THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ------------GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred ------------HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 24588899999999999999543 35678888999999998876
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00011 Score=76.58 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=63.4
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcC--CCeEEEEeccCCCCCchh--HHhhccchh----hhcccCCCCCCCCCccchh
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKSSTLS--VIYDRGLIG----VYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~~~l~--~i~eRGlig----~~~~wce~f~typrtyDl~ 507 (595)
.+......+|+|+|||.|.++.+|.+ ..+-+ +-.|-+..+. .+-+.|+-+ +-+|. |...| +||+|
T Consensus 179 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~---~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~---~~~~p-~~D~v 251 (348)
T 3lst_A 179 AGDFPATGTVADVGGGRGGFLLTVLREHPGLQG---VLLDRAEVVARHRLDAPDVAGRWKVVEGDF---LREVP-HADVH 251 (348)
T ss_dssp HSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEE---EEEECHHHHTTCCCCCGGGTTSEEEEECCT---TTCCC-CCSEE
T ss_pred hCCccCCceEEEECCccCHHHHHHHHHCCCCEE---EEecCHHHhhcccccccCCCCCeEEEecCC---CCCCC-CCcEE
Confidence 34556678999999999999999865 23322 2122211111 011123322 22333 24456 99999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+..++-+|. .-....+|-|+-|+|||||.++|.|
T Consensus 252 ~~~~vlh~~~-------d~~~~~~L~~~~~~LkpgG~l~i~e 286 (348)
T 3lst_A 252 VLKRILHNWG-------DEDSVRILTNCRRVMPAHGRVLVID 286 (348)
T ss_dssp EEESCGGGSC-------HHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred EEehhccCCC-------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999998774 1122479999999999999999964
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=4.1e-05 Score=77.64 Aligned_cols=94 Identities=16% Similarity=0.188 Sum_probs=61.8
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----c-----hh-hhcccCCCCCCCCCccchhhccCc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----L-----IG-VYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----l-----ig-~~~~wce~f~typrtyDl~H~~~~ 512 (595)
.|||+|||.|.++..|..... +|+-.|-. ..+..+-+|- + +- +..|.. .++ ++.+||+|.+...
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~v~~~~~ 159 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW---EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS-AFA-LDKRFGTVVISSG 159 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC---CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT-BCC-CSCCEEEEEECHH
T ss_pred cEEEEeccCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh-cCC-cCCCcCEEEECCc
Confidence 899999999999999988742 45555543 5565555441 1 11 122222 233 2689999986533
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.-++. +.-....+|-|+-|+|||||.+++.
T Consensus 160 ~~~~~------~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 160 SINEL------DEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp HHTTS------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccC------CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 33232 2233578999999999999999996
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=97.40 E-value=4.7e-05 Score=80.62 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=64.6
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc---------c-c----hh-hhcccCCCCC-----C
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR---------G-L----IG-VYHDWCEPFS-----T 499 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR---------G-l----ig-~~~~wce~f~-----t 499 (595)
..|||+|||.|.++..|... +-. .|+-.|-. ..+..+-++ | + +- ...|..+ +. .
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~-l~~~~~~~ 161 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHG--KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIEN-LATAEPEG 161 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTC--EEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTC-GGGCBSCC
T ss_pred CEEEEecCccCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHH-hhhcccCC
Confidence 57999999999998888553 211 34444543 566666555 4 1 11 1123222 21 3
Q ss_pred CC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 500 YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 500 yp-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+| .+||+|+++.++.+.. +...+|-|+-|+|||||++++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~---------d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLST---------NKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp CCTTCEEEEEEESCGGGCS---------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEEEEccchhcCC---------CHHHHHHHHHHHcCCCCEEEEEE
Confidence 44 7999999999988653 35789999999999999999974
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=7e-05 Score=76.49 Aligned_cols=101 Identities=9% Similarity=0.006 Sum_probs=63.7
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccc-------------hhhhcccCCCCC---CC---C
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGL-------------IGVYHDWCEPFS---TY---P 501 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGl-------------ig~~~~wce~f~---ty---p 501 (595)
-.+|||+|||.|.++..|...+.. +|+-.|-. ..+..+-+|-- +-.++.=++.++ .+ +
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCEEEEECCCCcHHHHHHHhcCCC--EEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 358999999999999999865532 45555544 55555544420 111111122222 13 3
Q ss_pred CccchhhccCccccc-cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 502 RTYDLIHVSGIESLI-KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 502 rtyDl~H~~~~~s~~-~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.+||+|-+..++... . +.-....+|-|+-|+|+|||.+++...
T Consensus 113 ~~fD~V~~~~~l~~~~~------~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFE------SYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGG------SHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEEecchhhccC------CHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 599999988766432 1 112345799999999999999999743
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0002 Score=67.66 Aligned_cols=136 Identities=12% Similarity=0.158 Sum_probs=68.0
Q ss_pred eeEEecccchhHHHhhhcCC------CeEEEEeccCCCCCchhHHhhccchhhhcccCCCCC------------------
Q 007645 443 RNIMDMNAFFGGFAAALTSD------PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFS------------------ 498 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~------~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~------------------ 498 (595)
.+|||+|||.|+++.+|.+. .|..+-+.|......+.+ +-.|..+ ..
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~--------~~~d~~~-~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYF--------IQGEIGK-DNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEE--------EECCTTT-TSSCCC-----------CHH
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceE--------EEccccc-hhhhhhccccccccccchhh
Confidence 57999999999999888543 245444444211111111 1112211 11
Q ss_pred ------CCC-CccchhhccCccccccC--CCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCce-
Q 007645 499 ------TYP-RTYDLIHVSGIESLIKN--PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWT- 567 (595)
Q Consensus 499 ------typ-rtyDl~H~~~~~s~~~~--~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~- 567 (595)
.+| .+||+|-++..+..... +......-....+|-|+-|+|+|||.+++.... +-...+...+... |.
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~~-f~~ 173 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGM-FQL 173 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHTT-EEE
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHHH-Hhe
Confidence 034 68999998765432100 000000000123788899999999999985211 1123333433333 33
Q ss_pred eEEe-ccCCCCCCCceEEEEEe
Q 007645 568 AAVH-DKEPGSNGREKILVATK 588 (595)
Q Consensus 568 ~~~~-~~~~~~~~~~~~l~~~K 588 (595)
+... +.-..+...|..+|+++
T Consensus 174 v~~~~~~~~r~~s~e~y~v~~~ 195 (201)
T 2plw_A 174 VHTTKPKASRNESREIYLVCKN 195 (201)
T ss_dssp EEECCCC-----CCEEEEEEEE
T ss_pred EEEECCcccCCcCceEEEEEec
Confidence 3332 22233345678888876
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=97.37 E-value=7.4e-05 Score=77.52 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=60.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhHHh----hccchh---hhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIY----DRGLIG---VYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~i~----eRGlig---~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
.+|||+|||.|.++..+...+.- .|+-.|....+..+- +.|+-. +++.-.+.++ .| ..||+|.+..+..
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~~--~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~~~ 116 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGY 116 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBT
T ss_pred CEEEEecCccHHHHHHHHHCCCC--EEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCchh
Confidence 48999999999998888765431 233333332333332 235422 2222222222 45 7899999876544
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
... ..-.+..+|-+++|+|+|||.+|.
T Consensus 117 ~l~------~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 117 FLL------YESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBS------TTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hcc------cHHHHHHHHHHHHhhcCCCeEEEE
Confidence 332 334567899999999999999983
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.37 E-value=4.4e-05 Score=72.48 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=60.2
Q ss_pred eeEEecccchhHHH-hhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hhhh-cccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFA-AALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGVY-HDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~fa-a~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
.+|||+|||.|.++ +.+..... +|+-.|-. ..+..+-++ |. +-.. .|. +.++ +| .+||+|.+..++
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~-~~~~-~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENNFKLNISKGDI-RKLP-FKDESMSFVYSYGTI 99 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT-TSCC-SCTTCEEEEEECSCG
T ss_pred CEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCceEEEECch-hhCC-CCCCceeEEEEcChH
Confidence 58999999999884 44444332 44555544 444444333 21 1111 122 1222 43 799999998877
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++ ..-....+|-|+-|+|+|||.+++.+
T Consensus 100 ~~~-------~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 100 FHM-------RKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp GGS-------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhC-------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 644 12346689999999999999999974
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00053 Score=70.24 Aligned_cols=116 Identities=13% Similarity=0.083 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH---cCCCeEEEEccccc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE---RGIPAFVAMLGTRR 257 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e---rg~~~~~~~~d~~~ 257 (595)
+.+..+++...+ ... ....+|||+||++|.|+..++++. .+..+.++|+...+...+.. .+.+......++.-
T Consensus 65 Raa~KL~ei~ek--~l~-~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di 140 (300)
T 3eld_A 65 RGAAKIRWLHER--GYL-RITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNV 140 (300)
T ss_dssp TTHHHHHHHHHH--TSC-CCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCT
T ss_pred hHHHHHHHHHHh--CCC-CCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEeccccccccccccccCCceEEeecCcee
Confidence 444555444433 222 235599999999999999999862 34467788876432110000 01122222222222
Q ss_pred CCCCCCceeEEEEcCCCcccccCH-------HHHHHHHHhhcCCC-cEEEEEc
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYN-------ATYLIEVDRLLRPG-GYLVISG 302 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~-------~~~L~Ei~RvLRPG-G~lvls~ 302 (595)
..+..+.+|+|+|..+.. .... ..+|.-+.++|+|| |.|++-.
T Consensus 141 ~~l~~~~~DlVlsD~APn--sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 141 FTMPTEPSDTLLCDIGES--SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp TTSCCCCCSEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred eecCCCCcCEEeecCcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 334567899999976553 2111 13466668899999 9999976
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0001 Score=74.06 Aligned_cols=140 Identities=14% Similarity=0.198 Sum_probs=82.7
Q ss_pred eeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHHhhc----cc--h-hhhcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|.. .|- .+|+-.|-. ..+.++-++ |+ + -...|+.+.++ +.+||+|-++-.+
T Consensus 111 ~~vLDlG~GsG~~~~~la~~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~--~~~fD~Iv~npPy 186 (276)
T 2b3t_A 111 CRILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA--GQQFAMIVSNPPY 186 (276)
T ss_dssp CEEEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT--TCCEEEEEECCCC
T ss_pred CEEEEecCCccHHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcc--cCCccEEEECCCC
Confidence 4799999999999998863 222 244555544 555554443 33 1 12234444332 4789999987544
Q ss_pred ccccC----CCC--CCCC----------CChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCCC
Q 007645 514 SLIKN----PGS--NKNS----------CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGS 577 (595)
Q Consensus 514 s~~~~----~~~--~~~~----------c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 577 (595)
....+ +.. .... -.+..++-++-|+|+|||++++.......++++++++..-|+..... ..-
T Consensus 187 ~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf~~v~~~--~d~ 264 (276)
T 2b3t_A 187 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETC--RDY 264 (276)
T ss_dssp BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEE--ECT
T ss_pred CCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCcEEEEE--ecC
Confidence 32210 000 0000 12356888999999999999997655556677777766666532111 123
Q ss_pred CCCceEEEEEe
Q 007645 578 NGREKILVATK 588 (595)
Q Consensus 578 ~~~~~~l~~~K 588 (595)
.+.+++++++|
T Consensus 265 ~g~~r~~~~~~ 275 (276)
T 2b3t_A 265 GDNERVTLGRY 275 (276)
T ss_dssp TSSEEEEEEEC
T ss_pred CCCCcEEEEEE
Confidence 34678888775
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=97.35 E-value=8.2e-05 Score=75.26 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=64.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccch-hhhcccCCC-C---CCCCCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLI-GVYHDWCEP-F---STYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGli-g~~~~wce~-f---~typrtyDl~H~~~~~s~~ 516 (595)
..|||+|||.|.++..|....- .|+-.|.. .-|..+-++--- .+-.+|.+. + ...+.+||+|-++.++.++
T Consensus 47 ~~VLDlGcGtG~~a~~La~~g~---~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~ 123 (261)
T 3iv6_A 47 STVAVIGASTRFLIEKALERGA---SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLINRF 123 (261)
T ss_dssp CEEEEECTTCHHHHHHHHHTTC---EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS
T ss_pred CEEEEEeCcchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhhHhC
Confidence 5899999999999999976542 45555544 566655554210 122233221 1 1224689999999888765
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. .-....+|-+|-|+| |||.++++
T Consensus 124 ~-------~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 124 T-------TEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp C-------HHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred C-------HHHHHHHHHHHHHhC-cCcEEEEE
Confidence 2 234567899999999 99999997
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=75.88 Aligned_cols=100 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhh----ccchh----hhcccCCCCCCCCCccchh
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLIG----VYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGlig----~~~~wce~f~typrtyDl~ 507 (595)
....-..|+|+|||.|.++.+|.+. .+ .++-.|-+..+..+-+ .|+-+ +-+|..+ ..|..||+|
T Consensus 179 ~~~~~~~vlDvG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 252 (374)
T 1qzz_A 179 DWSAVRHVLDVGGGNGGMLAAIALRAPHL---RGTLVELAGPAERARRRFADAGLADRVTVAEGDFFK---PLPVTADVV 252 (374)
T ss_dssp CCTTCCEEEEETCTTSHHHHHHHHHCTTC---EEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSCCEEEE
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHHCCCC---EEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---cCCCCCCEE
Confidence 3445679999999999999998643 22 1222222333333332 34321 2233333 356569999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.+..++-+|. .-....+|-++-|+|+|||.++|.|.
T Consensus 253 ~~~~vl~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 253 LLSFVLLNWS-------DEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEESCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEeccccCCC-------HHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9999987663 11224799999999999999998765
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00031 Score=69.35 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=64.0
Q ss_pred eeEEecccchhHHHhhhcCC--------CeEEEEeccCCCCCchhHHhh--ccchhhhcccCCC--CCCCC-Cccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--------PVWVMNVVPARKSSTLSVIYD--RGLIGVYHDWCEP--FSTYP-RTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--------~vwvmnv~p~~~~~~l~~i~e--RGlig~~~~wce~--f~typ-rtyDl~H~ 509 (595)
.+|||+|||.|..++.|.+. .|..+-+.|.- +..+-. ..+-=+..|..+. ++..+ .+||+|+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~----l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR----CQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTT----CCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHH----HHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence 58999999999999988542 24444433332 111111 1111122233332 22222 26999996
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcc-cccCCcEEEEeCChHH-----HHHHHHhHhcc--Ccee
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDR-MLRPEGTVVVRDSPEV-----IDKVSRIANTV--RWTA 568 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdR-iLRP~G~~i~rd~~~~-----~~~~~~~~~~~--~W~~ 568 (595)
+.. + -....+|-|+-| +|||||.+++.|-..+ -..+.++++.. .++.
T Consensus 159 d~~----~--------~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~ 213 (236)
T 2bm8_A 159 DNA----H--------ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSM 213 (236)
T ss_dssp ESS----C--------SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEE
T ss_pred CCc----h--------HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEE
Confidence 543 2 256678999998 9999999999763211 12566666665 4654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0002 Score=65.85 Aligned_cols=109 Identities=9% Similarity=0.100 Sum_probs=73.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc--h-hhhcccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I-GVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i-g~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
.+|||+|||.|.++..|..... +|+-.|-. ..+..+-++ |+ + -...|+.+.++. .+||+|.++.+
T Consensus 37 ~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~--~~~D~i~~~~~-- 109 (183)
T 2yxd_A 37 DVVVDVGCGSGGMTVEIAKRCK---FVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK--LEFNKAFIGGT-- 109 (183)
T ss_dssp CEEEEESCCCSHHHHHHHTTSS---EEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG--CCCSEEEECSC--
T ss_pred CEEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC--CCCcEEEECCc--
Confidence 5899999999999999987322 34444433 444444433 33 1 112233332222 68999997765
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCceeEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
.....+|-++-|+ |||.+++.+ ..+-..++.+.++...|++...
T Consensus 110 -----------~~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 110 -----------KNIEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp -----------SCHHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----------ccHHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcCCeEEEE
Confidence 2456788899998 999999986 6666778888888888887765
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00016 Score=75.62 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=66.2
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhHHhh----ccc---hhhhcccCCCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIYD----RGL---IGVYHDWCEPFST 499 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~i~e----RGl---ig~~~~wce~f~t 499 (595)
..|.+.+...+....=..|||+|||.|.++..+...+.- .|+-.|....+..+-+ .|+ |-+++.=-+.+ .
T Consensus 36 ~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~--~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~ 112 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEV-S 112 (348)
T ss_dssp HHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTC-C
T ss_pred HHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCC--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhC-C
Confidence 335544433332222358999999999999888765431 2222332223333322 244 22222111222 2
Q ss_pred CCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 500 YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 500 yprtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.|..||+|-+..++.++. .-.+...+.++-|+|+|||.+++.
T Consensus 113 ~~~~~D~Ivs~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 113 LPEQVDIIISEPMGYMLF-------NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp CSSCEEEEEECCCBTTBT-------TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred CCCceeEEEEeCchhcCC-------hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 457899999988877553 234567888999999999999864
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00015 Score=72.29 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=72.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hhhhc-ccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGVYH-DWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~~-~wce~f~typrtyDl~H~~~~~s~ 515 (595)
.+|||+|||.|.++.++.+... +|+-.|-. ..+..+-++ |+ +-.++ |..+.++ +.+||+|.++.++..
T Consensus 122 ~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~~~ 196 (254)
T 2nxc_A 122 DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALP--FGPFDLLVANLYAEL 196 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGG--GCCEEEEEEECCHHH
T ss_pred CEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCc--CCCCCEEEECCcHHH
Confidence 5899999999999988866543 55555543 555555443 33 11111 2222221 268999997654432
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCceeEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~~~~~ 571 (595)
+..++-++-|+|+|||.+++.+- ....+.+.+.++..-++....
T Consensus 197 ------------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~ 241 (254)
T 2nxc_A 197 ------------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp ------------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred ------------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCCCEEEEE
Confidence 45689999999999999999742 234667777777777776544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00024 Score=72.86 Aligned_cols=99 Identities=22% Similarity=0.313 Sum_probs=63.4
Q ss_pred CCeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHHhhc----cchh----hhcccCCCCCCCCCccchhhcc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~H~~ 510 (595)
..-.+|+|+|||.|.++.+|.+. |-. .++-.|-+..+..+-++ |+-+ +-+|..+. .+|..||+|.+.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNA--EIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEV--DYGNDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTC--EEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTS--CCCSCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCC--eEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccC--CCCCCCcEEEEc
Confidence 44578999999999999998654 211 23333333333333332 4322 12232221 356669999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.++.++. .-....+|-++-|+|+|||++++.|
T Consensus 240 ~~l~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e 271 (335)
T 2r3s_A 240 NFLHHFD-------VATCEQLLRKIKTALAVEGKVIVFD 271 (335)
T ss_dssp SCGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chhccCC-------HHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 9888763 1234579999999999999988853
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=70.22 Aligned_cols=128 Identities=13% Similarity=0.267 Sum_probs=76.0
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccch---h-hhcccCCCCC-CCCCccchhhcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLI---G-VYHDWCEPFS-TYPRTYDLIHVS 510 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGli---g-~~~~wce~f~-typrtyDl~H~~ 510 (595)
-++|||+|||.|.++.+|... + .-.|+-.|-. ..+..+-+ .|+- - +..|..+..+ ..+.+||+|.++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISD--DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCT--TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 368999999999999999762 1 1234444433 44444332 2431 1 1223333333 335899999855
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-----------------hHHHHHHHH----hHhccCceeE
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----------------PEVIDKVSR----IANTVRWTAA 569 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-----------------~~~~~~~~~----~~~~~~W~~~ 569 (595)
.-. -....++-++-|+|||||.+++.+- ......+++ +...-++...
T Consensus 150 ~~~------------~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 217 (232)
T 3ntv_A 150 AAK------------AQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTN 217 (232)
T ss_dssp TTS------------SSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CcH------------HHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEE
Confidence 322 3355688899999999999999311 112233333 3444567766
Q ss_pred EeccCCCCCCCceEEEEEec
Q 007645 570 VHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 570 ~~~~~~~~~~~~~~l~~~K~ 589 (595)
.... .+.+.|++|+
T Consensus 218 ~lp~------~dG~~i~~k~ 231 (232)
T 3ntv_A 218 FLNI------DDGLAISIKG 231 (232)
T ss_dssp EECS------TTCEEEEEEC
T ss_pred EEEc------CCceEEEEEC
Confidence 6521 3568888874
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00067 Score=68.36 Aligned_cols=121 Identities=13% Similarity=0.099 Sum_probs=73.1
Q ss_pred CcceEEEECCCCcHHHHHHhhc-------CCc----eEEEEeecCcH---HHHHHH-----------HHc----------
Q 007645 200 TLRTALDMGCGVASFGGSMLSE-------NIL----TLSFAPRDSHK---AQIQFA-----------LER---------- 244 (595)
Q Consensus 200 ~~r~VLDIGCGtG~~a~~La~~-------gv~----~~~v~~vD~s~---~~l~~A-----------~er---------- 244 (595)
...+|||||+|+|..+..+++. +.. ...++.+|..+ +.++.| ++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3458999999999877765542 221 35666666554 444422 221
Q ss_pred ---------CCCeEEEEccccc-CCCCC----CceeEEEEcCCCcccc-cC--HHHHHHHHHhhcCCCcEEEEEcCCCCC
Q 007645 245 ---------GIPAFVAMLGTRR-LPFPA----FSFDIVHCSRCLIPFT-AY--NATYLIEVDRLLRPGGYLVISGPPVQW 307 (595)
Q Consensus 245 ---------g~~~~~~~~d~~~-LPfpd----~sFDlV~~s~vL~h~~-~d--~~~~L~Ei~RvLRPGG~lvls~p~~~~ 307 (595)
..++.+..+|+.. ++.-+ ..||+|+.-. +..-. ++ ...++.++.|+|||||+|+..+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~tysa---- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLATFTS---- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEESCC----
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEEEeC----
Confidence 0234566677544 44322 2799999742 21110 01 25789999999999999986321
Q ss_pred CCCchhHHHHHHHHHHcCcEEEEe
Q 007645 308 PKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 308 ~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
. ..+.+.+...+|++...
T Consensus 215 --a----~~vrr~L~~aGF~v~~~ 232 (257)
T 2qy6_A 215 --A----GFVRRGLQEAGFTMQKR 232 (257)
T ss_dssp --B----HHHHHHHHHHTEEEEEE
T ss_pred --C----HHHHHHHHHCCCEEEeC
Confidence 1 14566666678987654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00023 Score=68.55 Aligned_cols=141 Identities=11% Similarity=0.031 Sum_probs=80.4
Q ss_pred cccChhhhhhhhhhHHHHHHHH-HHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-
Q 007645 408 MKNGYDVFEADSRRWRRRVAYY-KNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR- 484 (595)
Q Consensus 408 ~~~~~~~f~~d~~~w~~~v~~y-~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR- 484 (595)
+|+..+.|..+...-+..+... ...+. +..+ ..|||+|||.|.++..|.... ..|+-.|-. ..+..+-++
T Consensus 25 ~g~~d~~f~~~~~~~~~~~~~~~l~~l~--~~~~--~~vLDlGcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~ 97 (204)
T 3njr_A 25 PGRPESAFAHDGQITKSPMRALTLAALA--PRRG--ELLWDIGGGSGSVSVEWCLAG---GRAITIEPRADRIENIQKNI 97 (204)
T ss_dssp SCCCGGGSCCSSCCCCHHHHHHHHHHHC--CCTT--CEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH
T ss_pred CCCCHHHhhcCCCCCcHHHHHHHHHhcC--CCCC--CEEEEecCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHH
Confidence 3455556644443333344332 12222 3333 689999999999998887653 244444543 555544433
Q ss_pred ---cchhhh----cccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHH
Q 007645 485 ---GLIGVY----HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDK 556 (595)
Q Consensus 485 ---Glig~~----~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~ 556 (595)
|+-+-+ .|..+.+... ..||+|-++.. ...+ ++-|+-|+|||||.+++.. ..+-..+
T Consensus 98 ~~~g~~~~v~~~~~d~~~~~~~~-~~~D~v~~~~~-------------~~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~ 162 (204)
T 3njr_A 98 DTYGLSPRMRAVQGTAPAALADL-PLPEAVFIGGG-------------GSQA-LYDRLWEWLAPGTRIVANAVTLESETL 162 (204)
T ss_dssp HHTTCTTTEEEEESCTTGGGTTS-CCCSEEEECSC-------------CCHH-HHHHHHHHSCTTCEEEEEECSHHHHHH
T ss_pred HHcCCCCCEEEEeCchhhhcccC-CCCCEEEECCc-------------ccHH-HHHHHHHhcCCCcEEEEEecCcccHHH
Confidence 443111 1222212222 36888864331 2455 8999999999999999974 4455666
Q ss_pred HHHhHhccCceeEE
Q 007645 557 VSRIANTVRWTAAV 570 (595)
Q Consensus 557 ~~~~~~~~~W~~~~ 570 (595)
+.++++...+++..
T Consensus 163 ~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 163 LTQLHARHGGQLLR 176 (204)
T ss_dssp HHHHHHHHCSEEEE
T ss_pred HHHHHHhCCCcEEE
Confidence 66666666665443
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00015 Score=67.24 Aligned_cols=112 Identities=17% Similarity=0.230 Sum_probs=71.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc---hh-hhcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IG-VYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig-~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++..|...- -+|+-.|.. ..+..+-++ |+ +- ...|..+.++.. .+||+|-++..+
T Consensus 35 ~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~D~v~~~~~~ 110 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-PDIDIAVVGGSG 110 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS-CCEEEEEESCCT
T ss_pred CEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC-CCCCEEEECCch
Confidence 589999999999998887754 344444443 444444332 32 11 112222222211 479999877654
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCceeEE
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~~~~ 570 (595)
. .+..+|-++-|+|+|||.+++.+ ..+...++.+++....|++..
T Consensus 111 ~------------~~~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 111 G------------ELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp T------------CHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCEE
T ss_pred H------------HHHHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCCceEE
Confidence 3 24679999999999999999975 345567777777766665443
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=97.27 E-value=7e-05 Score=75.51 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=53.6
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC----------------hHHHHHHHHhHhccC
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------------PEVIDKVSRIANTVR 565 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~----------------~~~~~~~~~~~~~~~ 565 (595)
.+||+|-+..++.... .+--+...+|-|+-|+|||||++++.+. .--.+++++++..--
T Consensus 173 ~~fD~V~~~~~l~~~~-----~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 247 (289)
T 2g72_A 173 LPADALVSAFCLEAVS-----PDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSG 247 (289)
T ss_dssp SSEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTT
T ss_pred CCCCEEEehhhhhhhc-----CCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcC
Confidence 6899999999887642 0112467899999999999999998521 012566777776666
Q ss_pred ceeEEecc-------CCC-CCCCceEEEEEeccCC
Q 007645 566 WTAAVHDK-------EPG-SNGREKILVATKSLWK 592 (595)
Q Consensus 566 W~~~~~~~-------~~~-~~~~~~~l~~~K~~w~ 592 (595)
++...... +.. +....-++++.|+-|.
T Consensus 248 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
T 2g72_A 248 YKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKVGL 282 (289)
T ss_dssp EEEEEEEEEECCGGGCCTTBCCCEEEEEEEEECC-
T ss_pred CeEEEeeEeeccccccccccCcceEEEEEEecccc
Confidence 65433211 111 1222345667776654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=74.13 Aligned_cols=129 Identities=11% Similarity=0.034 Sum_probs=75.9
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-CccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~H~~~~~s~ 515 (595)
..|||+|||.|+++|.++.+ +- -.|+-.|-. ..+..+-++ |+ .-+.-.|.-...+| .+||+|.....-
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~g--a~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~~FDvV~~~a~~-- 198 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLEFDVLMVAALA-- 198 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTTC--CEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGCCCSEEEECTTC--
T ss_pred CEEEEECCCccHHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCCCcCEEEECCCc--
Confidence 68999999999988765322 11 234444433 555555443 55 22222233333355 899999754331
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHH---H-H-HHhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVID---K-V-SRIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~---~-~-~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
-..+.++-|+-|+|||||.+++++....-. . + ..+.+ .|+.....+..+ ...+.|++++|.
T Consensus 199 ----------~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~~~~~--gf~~~~~~~p~~-~v~N~vv~a~k~ 264 (298)
T 3fpf_A 199 ----------EPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSDDDIT--GFRRAGVVLPSG-KVNNTSVLVFKC 264 (298)
T ss_dssp ----------SCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCTGGGT--TEEEEEEECCCT-TCCCEEEEEEEC
T ss_pred ----------cCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCChhhhh--hhhheeEECCCC-CcCcEEEEEEcc
Confidence 234579999999999999999997432100 0 0 11223 566655544433 334678888874
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=5e-05 Score=76.05 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=63.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc---hhhh-cccCCCCCC-CCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL---IGVY-HDWCEPFST-YPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl---ig~~-~~wce~f~t-yprtyDl~H~~~~ 512 (595)
..|||+|||.|.++..|...+. -+|+-.|-. ..+..+-++ |+ +-.. .|.. .++. -+.+||+|.+..+
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~~~~~~~fD~v~~~~~ 142 (298)
T 1ri5_A 66 DSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-GRHMDLGKEFDVISSQFS 142 (298)
T ss_dssp CEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTT-TSCCCCSSCEEEEEEESC
T ss_pred CeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcc-ccccCCCCCcCEEEECch
Confidence 5899999999999988876542 134444443 445544443 22 1112 1222 1221 2479999999887
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.+.. .+.-....+|-|+-|+|+|||.+++..
T Consensus 143 l~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (298)
T 1ri5_A 143 FHYAF-----STSESLDIAQRNIARHLRPGGYFIMTV 174 (298)
T ss_dssp GGGGG-----SSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hhhhc-----CCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74310 022345679999999999999999975
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.25 E-value=8.8e-05 Score=72.52 Aligned_cols=97 Identities=12% Similarity=-0.082 Sum_probs=61.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCC------CC--CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFST------YP--RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~t------yp--rtyDl~H~~~~~ 513 (595)
..|||+|||.|.++..|...-- +|+-.|-. ..+..+-++--..-..-.+.-+.. ++ ..||+|.+..++
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~ 134 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGF 134 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSS
T ss_pred CeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcchh
Confidence 5699999999999998865322 45555544 555555544210011111111111 11 248999999888
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+. ..-....+|-|+-|+|+|||++++.+
T Consensus 135 ~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~ 163 (245)
T 3ggd_A 135 HHI-------PVEKRELLGQSLRILLGKQGAMYLIE 163 (245)
T ss_dssp TTS-------CGGGHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hcC-------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 755 22356789999999999999988864
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.24 E-value=7.7e-05 Score=72.56 Aligned_cols=106 Identities=10% Similarity=0.089 Sum_probs=67.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc--chhhhcccCCCCCCC-CCccchhhccCccccccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG--LIGVYHDWCEPFSTY-PRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG--lig~~~~wce~f~ty-prtyDl~H~~~~~s~~~~ 518 (595)
..|||+|||.|.++..|..... +|+-.|-. ..+..+-++. +-=+..|+.+.++.- +.+||+|.+.
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-------- 118 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-------- 118 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE--------
T ss_pred CeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC--------
Confidence 5799999999999999987743 55555654 6676666662 111234444444422 3799999854
Q ss_pred CCCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCc
Q 007645 519 PGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRW 566 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W 566 (595)
-....+|-|+-|+|||||.++.-........+.+.+...-+
T Consensus 119 -------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf 159 (226)
T 3m33_A 119 -------RGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAAVGW 159 (226)
T ss_dssp -------SCCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHHTTC
T ss_pred -------CCHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHHCCC
Confidence 12446889999999999999943222122344444444333
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00046 Score=68.37 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=76.4
Q ss_pred eeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCC--Cccchh
Q 007645 442 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYP--RTYDLI 507 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typ--rtyDl~ 507 (595)
-++|||+|||.|.++.+|... .. .|+-.|-. ..+..+-++ |+-. ...|..+.++..+ .+||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 378999999999999998764 21 23334433 445544433 4421 1122222223333 389999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh------------HHHHHHHH----hHhccCceeEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAAVH 571 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------------~~~~~~~~----~~~~~~W~~~~~ 571 (595)
.++.-.. ....+|-++-|+|||||.+|+.+-. .....+++ +...-+|+....
T Consensus 141 ~~d~~~~------------~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (248)
T 3tfw_A 141 FIDADKP------------NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL 208 (248)
T ss_dssp EECSCGG------------GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred EECCchH------------HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence 8655322 2345788889999999999986322 12233333 334456666543
Q ss_pred ccCCCCCCCceEEEEEec
Q 007645 572 DKEPGSNGREKILVATKS 589 (595)
Q Consensus 572 ~~~~~~~~~~~~l~~~K~ 589 (595)
- .-+....+.++|++|+
T Consensus 209 ~-~~g~~~~DG~~i~~~~ 225 (248)
T 3tfw_A 209 Q-TVGTKGWDGFTLAWVN 225 (248)
T ss_dssp E-ECSTTCSEEEEEEEEC
T ss_pred e-cCCCCCCCeeEEEEEe
Confidence 1 1122335788888875
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00063 Score=72.25 Aligned_cols=116 Identities=13% Similarity=-0.005 Sum_probs=78.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-------------CeEE
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-------------PAFV 250 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-------------~~~~ 250 (595)
..|.+.+.... ......++||=||.|.|..++++++... ..++.+|+++..++.|++... .+.+
T Consensus 190 ~~Y~e~l~h~~-l~~~~pkrVLIIGgGdG~~~revlkh~~--~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~v 266 (381)
T 3c6k_A 190 LAYTRAIMGSG-KEDYTGKDVLILGGGDGGILCEIVKLKP--KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQV 266 (381)
T ss_dssp HHHHHHHTTTT-CCCCTTCEEEEEECTTCHHHHHHHTTCC--SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEE
T ss_pred HHHHHHHHHHH-hhcCCCCeEEEECCCcHHHHHHHHhcCC--ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceee
Confidence 34655554433 3333457999999999999999998754 467788999999999987521 2456
Q ss_pred EEcccccC----CCCCCceeEEEEcCCCcccccC---------HHHHHHHHHhhcCCCcEEEEEc
Q 007645 251 AMLGTRRL----PFPAFSFDIVHCSRCLIPFTAY---------NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 251 ~~~d~~~L----Pfpd~sFDlV~~s~vL~h~~~d---------~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...|+... .-..+.||+|+.-..-.....+ ...+++.+.++|+|||.++...
T Consensus 267 ii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 267 LIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 66664321 1234679999974211000001 1367888999999999999864
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00026 Score=68.02 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=74.4
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccc--hhh-hcccCCCCCC-CC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGL--IGV-YHDWCEPFST-YP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~-~~~wce~f~t-yp-rtyDl~H~~~ 511 (595)
..|+|+|||.|.|+.+|... |- .+|+-.|-. ..+..+-+ .|+ +-. ..|..+ ++. +| .+||+|.++.
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPD--INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSD-LTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTT--SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSC-GGGTSCTTCCSEEEEES
T ss_pred CeEEEEccCcCHHHHHHHHHCCC--CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCCCCCCEEEEEC
Confidence 46999999999999888543 11 244555543 55554443 233 112 223322 321 43 7899999763
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~~~ 571 (595)
.. .|.....+..+-....+|-++-|+|+|||.+++. |..+..+.+.+++....|+....
T Consensus 120 ~~-~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 120 SD-PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp CC-CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CC-CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCCCeeeec
Confidence 21 1210000011223457999999999999999997 56566777777776666765443
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00042 Score=64.16 Aligned_cols=81 Identities=14% Similarity=0.132 Sum_probs=56.6
Q ss_pred ceEEEECCCCc-HHHHHHhh-cCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCC--CceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVA-SFGGSMLS-ENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPA--FSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG-~~a~~La~-~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd--~sFDlV~~s~vL~h~ 277 (595)
.+|||||||.| ..+..|++ .|+ ++.++|+++..++ +++.|+.+ |..+ ..||+|.+.+.-
T Consensus 37 ~rVlEVG~G~g~~vA~~La~~~g~---~V~atDInp~Av~----------~v~dDiF~-P~~~~Y~~~DLIYsirPP--- 99 (153)
T 2k4m_A 37 TRVVEVGAGRFLYVSDYIRKHSKV---DLVLTDIKPSHGG----------IVRDDITS-PRMEIYRGAALIYSIRPP--- 99 (153)
T ss_dssp SEEEEETCTTCCHHHHHHHHHSCC---EEEEECSSCSSTT----------EECCCSSS-CCHHHHTTEEEEEEESCC---
T ss_pred CcEEEEccCCChHHHHHHHHhCCC---eEEEEECCccccc----------eEEccCCC-CcccccCCcCEEEEcCCC---
Confidence 48999999999 69999997 665 6778899886655 66666655 3332 489999987643
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+....+.++.+.+ |.-+++..
T Consensus 100 -~El~~~i~~lA~~v--~adliI~p 121 (153)
T 2k4m_A 100 -AEIHSSLMRVADAV--GARLIIKP 121 (153)
T ss_dssp -TTTHHHHHHHHHHH--TCEEEEEC
T ss_pred -HHHHHHHHHHHHHc--CCCEEEEc
Confidence 34555666666544 45566643
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0024 Score=62.14 Aligned_cols=119 Identities=8% Similarity=-0.033 Sum_probs=74.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC----CeEEEEccccc---------------C
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI----PAFVAMLGTRR---------------L 258 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~----~~~~~~~d~~~---------------L 258 (595)
++|||+||| ..+..|++. . ...++.+|.++...+.|++. |. ++.+..+++.. +
T Consensus 32 ~~VLEiGtG--ySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l 107 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY 107 (202)
T ss_dssp SEEEEESCS--HHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred CEEEEECch--HHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence 489999985 566666664 2 35788889999999988754 54 35666666432 2
Q ss_pred C--------C-CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 259 P--------F-PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 259 P--------f-pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
+ . ..++||+|+.-.-. ....+..+.+.|||||++++-.. . +. ..|..++++++ .+
T Consensus 108 ~~~~~~i~~~~~~~~fDlIfIDg~k------~~~~~~~~l~~l~~GG~Iv~DNv-~-~r---~~y~~v~~~~~-----~~ 171 (202)
T 3cvo_A 108 PDYPLAVWRTEGFRHPDVVLVDGRF------RVGCALATAFSITRPVTLLFDDY-S-QR---RWQHQVEEFLG-----AP 171 (202)
T ss_dssp THHHHGGGGCTTCCCCSEEEECSSS------HHHHHHHHHHHCSSCEEEEETTG-G-GC---SSGGGGHHHHC-----CC
T ss_pred HHHhhhhhccccCCCCCEEEEeCCC------chhHHHHHHHhcCCCeEEEEeCC-c-CC---cchHHHHHHHh-----HH
Confidence 2 1 23789999976532 23566667899999999966210 1 11 12334444443 23
Q ss_pred EeecceeEeec
Q 007645 330 AVDGNTVIWKK 340 (595)
Q Consensus 330 ~~~~~~~iw~K 340 (595)
...+.+++++.
T Consensus 172 ~~~~~~a~f~~ 182 (202)
T 3cvo_A 172 LMIGRLAAFQV 182 (202)
T ss_dssp EEETTEEEEEE
T ss_pred hhcCceEEEEe
Confidence 34456777765
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00019 Score=75.43 Aligned_cols=138 Identities=12% Similarity=0.150 Sum_probs=84.1
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHh----hccchh----hhcccCCCCCCCCCccc
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIY----DRGLIG----VYHDWCEPFSTYPRTYD 505 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~----eRGlig----~~~~wce~f~typrtyD 505 (595)
.+......+|+|+|||.|.++.+|.+. .+- ++-.|-+..+..+- +.|+-+ +-+|.. ..+|..||
T Consensus 197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~---~~~p~~~D 270 (369)
T 3gwz_A 197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGLR---GTLLERPPVAEEARELLTGRGLADRCEILPGDFF---ETIPDGAD 270 (369)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCE---EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT---TCCCSSCS
T ss_pred hCCCccCcEEEEeCCCccHHHHHHHHHCCCCe---EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC---CCCCCCce
Confidence 345566799999999999999999653 221 22222233333332 234322 223333 34566899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh------------------------HHHHHHHHhH
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------------------EVIDKVSRIA 561 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------------------------~~~~~~~~~~ 561 (595)
+|-+..++..|. .-....+|-++=|.|+|||.++|.|.. ...++.++++
T Consensus 271 ~v~~~~vlh~~~-------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll 343 (369)
T 3gwz_A 271 VYLIKHVLHDWD-------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALL 343 (369)
T ss_dssp EEEEESCGGGSC-------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHH
T ss_pred EEEhhhhhccCC-------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHH
Confidence 999999997664 112235999999999999999995311 0134566677
Q ss_pred hccCceeEEeccCCCCCCCceEEEEEe
Q 007645 562 NTVRWTAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 562 ~~~~W~~~~~~~~~~~~~~~~~l~~~K 588 (595)
+.--++....... ......++.++|
T Consensus 344 ~~aGf~~~~~~~~--~~~~~svie~~~ 368 (369)
T 3gwz_A 344 EKSGLRVERSLPC--GAGPVRIVEIRR 368 (369)
T ss_dssp HTTTEEEEEEEEC--SSSSEEEEEEEE
T ss_pred HHCCCeEEEEEEC--CCCCcEEEEEEe
Confidence 7777776544221 112345666766
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=75.12 Aligned_cols=138 Identities=13% Similarity=0.181 Sum_probs=83.5
Q ss_pred cCCCC-eeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhh----ccchh----hhcccCCCCCCCCCccc
Q 007645 437 LGTPA-IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLIG----VYHDWCEPFSTYPRTYD 505 (595)
Q Consensus 437 ~~~~~-~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGlig----~~~~wce~f~typrtyD 505 (595)
+.... -+.|+|+|||.|.++.+|.+. .+-+.. .|-+..+..+-+ .|+-. +-+|.-+.-...|..||
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 250 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQI---WDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD 250 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEE---EECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEE---EECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence 33344 789999999999999998643 222222 233334443332 24422 22232221111467899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC--------h--H-----------------HHHHHH
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS--------P--E-----------------VIDKVS 558 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~--------~--~-----------------~~~~~~ 558 (595)
+|.+.+++.+|. .-....+|-++-|.|+|||.++|.|. . . ..++++
T Consensus 251 ~v~~~~vlh~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 323 (352)
T 3mcz_A 251 VVMLNDCLHYFD-------AREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIA 323 (352)
T ss_dssp EEEEESCGGGSC-------HHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHH
T ss_pred EEEEecccccCC-------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHH
Confidence 999999998774 12346799999999999999999641 1 0 023355
Q ss_pred HhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 559 RIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 559 ~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
++++.--++..... .+...+++++|+
T Consensus 324 ~ll~~aGf~~~~~~-----~g~~~l~~a~kp 349 (352)
T 3mcz_A 324 GVVRDAGLAVGERS-----IGRYTLLIGQRS 349 (352)
T ss_dssp HHHHHTTCEEEEEE-----ETTEEEEEEECC
T ss_pred HHHHHCCCceeeec-----cCceEEEEEecC
Confidence 55555556554421 234678888886
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=70.01 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=72.7
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchh---h-hcccCCCCCCCC----Cccch
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG---V-YHDWCEPFSTYP----RTYDL 506 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig---~-~~~wce~f~typ----rtyDl 506 (595)
.+|||+|||.|.++.+|... .. .|+-.|-. ..+..+-++ |+-. . ..|..+.++..+ .+||+
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 60 RNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred CEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 68999999999999988664 22 33444432 444443322 4422 1 112112111121 56999
Q ss_pred hhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh------------HHHHHHHH----hHhccCceeEE
Q 007645 507 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAAV 570 (595)
Q Consensus 507 ~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------------~~~~~~~~----~~~~~~W~~~~ 570 (595)
|.++.... ....+|-++-|+|||||.+++.+-. .....+++ +...=+|+...
T Consensus 137 v~~d~~~~------------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 204 (223)
T 3duw_A 137 IFIDADKQ------------NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATA 204 (223)
T ss_dssp EEECSCGG------------GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred EEEcCCcH------------HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEE
Confidence 98665433 2346888999999999999986321 11223333 33344566655
Q ss_pred eccCCCCCCCceEEEEEec
Q 007645 571 HDKEPGSNGREKILVATKS 589 (595)
Q Consensus 571 ~~~~~~~~~~~~~l~~~K~ 589 (595)
...- +..+.+.+++++|+
T Consensus 205 ~p~~-~~~~~dG~~~~~~~ 222 (223)
T 3duw_A 205 LQTV-GSKGYDGFIMAVVK 222 (223)
T ss_dssp EEEE-ETTEEEEEEEEEEC
T ss_pred Eecc-CCCCCCeeEEEEEe
Confidence 4220 12234677777763
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=4.6e-05 Score=81.65 Aligned_cols=125 Identities=10% Similarity=0.188 Sum_probs=76.1
Q ss_pred HHHHHHHHhhhccCCCCeeeEEecccc------hhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhccchhhhccc
Q 007645 425 RVAYYKNTLNVKLGTPAIRNIMDMNAF------FGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDW 493 (595)
Q Consensus 425 ~v~~y~~~l~~~~~~~~~RnvmDm~~~------~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~w 493 (595)
....|.+.|.+.... -.+|||+||| .||.+..|... .|.-+-+-|.- . .....+-=+..|-
T Consensus 202 y~~~Ye~lL~~l~~~--~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m----~--~~~~rI~fv~GDa 273 (419)
T 3sso_A 202 FTPHYDRHFRDYRNQ--QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS----H--VDELRIRTIQGDQ 273 (419)
T ss_dssp CHHHHHHHHGGGTTS--CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG----G--GCBTTEEEEECCT
T ss_pred HHHHHHHHHHhhcCC--CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH----h--hcCCCcEEEEecc
Confidence 346677767654333 3799999999 67766666432 24444443331 1 1011111011121
Q ss_pred CCCCCCC------CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC------------------
Q 007645 494 CEPFSTY------PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------------------ 549 (595)
Q Consensus 494 ce~f~ty------prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd------------------ 549 (595)
+.++.- ..+||+|.+++. ++. ......|-|+=|+|||||.+|+.|
T Consensus 274 -~dlpf~~~l~~~d~sFDlVisdgs--H~~--------~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~ 342 (419)
T 3sso_A 274 -NDAEFLDRIARRYGPFDIVIDDGS--HIN--------AHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQEC 342 (419)
T ss_dssp -TCHHHHHHHHHHHCCEEEEEECSC--CCH--------HHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCC
T ss_pred -cccchhhhhhcccCCccEEEECCc--ccc--------hhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcc
Confidence 111111 278999998653 322 345678999999999999999963
Q ss_pred ChHHHHHHHHhHhccCcee
Q 007645 550 SPEVIDKVSRIANTVRWTA 568 (595)
Q Consensus 550 ~~~~~~~~~~~~~~~~W~~ 568 (595)
...+++.++++...+.|.-
T Consensus 343 ~~tii~~lk~l~D~l~~~~ 361 (419)
T 3sso_A 343 SGTSLGLLKSLIDAIQHQE 361 (419)
T ss_dssp TTSHHHHHHHHHHHHTGGG
T ss_pred hhHHHHHHHHHHHHhcccc
Confidence 2467899999999999864
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=97.18 E-value=6.6e-05 Score=72.79 Aligned_cols=132 Identities=10% Similarity=0.093 Sum_probs=76.4
Q ss_pred eeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhh----ccchh----hhcccCCCCCCCC-----Ccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYP-----RTY 504 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~wce~f~typ-----rty 504 (595)
-++|||+|||.|.++..|... .. .|+-.|-. ..+.++-+ .|+-. +..|..+.++..+ .+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 468999999999999988662 22 33334433 44444333 24321 1223223333444 689
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-----hHHHHHHHHhHhccCceeEEec-cCCCCC
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWTAAVHD-KEPGSN 578 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-----~~~~~~~~~~~~~~~W~~~~~~-~~~~~~ 578 (595)
|+|.++.....+. ....++-++ |+|||||.+++.|- .++++.+++ .=.++..... ......
T Consensus 136 D~V~~d~~~~~~~---------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~ 202 (221)
T 3u81_A 136 DMVFLDHWKDRYL---------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTHYSSYLEYMK 202 (221)
T ss_dssp SEEEECSCGGGHH---------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH---CTTEEEEEEEEEETTTT
T ss_pred EEEEEcCCcccch---------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh---CCCceEEEcccccccCC
Confidence 9998776655442 223466678 99999999999753 345555544 3346555442 112222
Q ss_pred CCceEEEEEec
Q 007645 579 GREKILVATKS 589 (595)
Q Consensus 579 ~~~~~l~~~K~ 589 (595)
..+.+.|++++
T Consensus 203 ~~dG~~~~~~~ 213 (221)
T 3u81_A 203 VVDGLEKAIYQ 213 (221)
T ss_dssp EEEEEEEEEEC
T ss_pred CCCceEEEEEe
Confidence 45677777764
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00029 Score=71.18 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=69.0
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCC--CC-CchhH-Hhhccchhh--hcccCCCCCCCCCccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPAR--KS-STLSV-IYDRGLIGV--YHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~--~~-~~l~~-i~eRGlig~--~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..|||+|||.|+|+..|... .|.-+-+.|.. ++ +.+.. .+.-++.-+ -.|-. .++ +.+||+|-++..+.
T Consensus 76 ~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~-~l~--~~~fD~V~sd~~~~- 151 (265)
T 2oxt_A 76 GRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIH-TLP--VERTDVIMCDVGES- 151 (265)
T ss_dssp EEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTT-TSC--CCCCSEEEECCCCC-
T ss_pred CEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHh-HCC--CCCCcEEEEeCccc-
Confidence 68999999999999888664 56655555531 00 10000 000011101 11211 122 48999999875522
Q ss_pred ccCCCCCCCCCCh-----hhhHHhhcccccCCc--EEEEe----CChHHHHHHHHhHhccCceeEEeccCCCCCCCceEE
Q 007645 516 IKNPGSNKNSCSL-----VDLMVEMDRMLRPEG--TVVVR----DSPEVIDKVSRIANTVRWTAAVHDKEPGSNGREKIL 584 (595)
Q Consensus 516 ~~~~~~~~~~c~~-----~~~llEmdRiLRP~G--~~i~r----d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l 584 (595)
. ..-.+ ..+|-++.|+|+||| .|++. +..++++.++.+...+. .+.+...-+-....|..+
T Consensus 152 -~------~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f~-~v~~~k~~sR~~s~E~y~ 223 (265)
T 2oxt_A 152 -S------PKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWG-GGLVRNPYSRNSTHEMYF 223 (265)
T ss_dssp -C------SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHC-CEEECCTTSCTTCCCEEE
T ss_pred -C------CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHcC-CEEEEEecccCCCccEEE
Confidence 1 00001 126788999999999 99885 44434444544443322 233332222233456666
Q ss_pred EEE
Q 007645 585 VAT 587 (595)
Q Consensus 585 ~~~ 587 (595)
|+.
T Consensus 224 v~~ 226 (265)
T 2oxt_A 224 TSR 226 (265)
T ss_dssp ESS
T ss_pred Eec
Confidence 654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=74.55 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=62.9
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhHHh----hccc---hhhhcccCCCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSVIY----DRGL---IGVYHDWCEPFST 499 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~i~----eRGl---ig~~~~wce~f~t 499 (595)
..|.+.+...+....=..|||+|||.|.++..+...+. -.|+-.|....+..+- +.|+ |-+++.=.+.+ .
T Consensus 50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~-~ 126 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-H 126 (340)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTS-C
T ss_pred HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHh-c
Confidence 44544443332222235899999999999988876542 1223333222333332 2343 22222112222 2
Q ss_pred CC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEE
Q 007645 500 YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV 546 (595)
Q Consensus 500 yp-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i 546 (595)
+| .+||+|-+..+..... ..-.+..+|-++.|+|+|||.+|
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~------~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLL------FESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBT------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchhhcc------CHHHHHHHHHHHHhhcCCCcEEE
Confidence 45 7999999876422221 22345678999999999999998
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=97.15 E-value=9.3e-05 Score=73.93 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=61.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc------------------cc-----------------
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------------------GL----------------- 486 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR------------------Gl----------------- 486 (595)
.+|||+|||.|.++..+..... -+|+-.|-. +-|..+-++ ++
T Consensus 57 ~~vLDiGCG~G~~~~~~~~~~~--~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (263)
T 2a14_A 57 DTLIDIGSGPTIYQVLAACDSF--QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 134 (263)
T ss_dssp EEEEESSCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred ceEEEeCCCccHHHHHHHHhhh--cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence 6799999999988877665543 245555433 333332211 00
Q ss_pred h--hhhcccCC--CCCCC-CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 487 I--GVYHDWCE--PFSTY-PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 487 i--g~~~~wce--~f~ty-prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
| -...|-.+ +|... ..+||+|-+..++.+.. .+.-++..+|-||-|+|||||.+|+++
T Consensus 135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-----CSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hheEEeccccCCCCCCccccCCCCEeeehHHHHHhc-----CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0 01112222 33322 25899999999987542 122244578999999999999999984
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00016 Score=72.49 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=75.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-c-------------------hhhhcccCCCCCCCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-L-------------------IGVYHDWCEPFSTYP 501 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-l-------------------ig~~~~wce~f~typ 501 (595)
..|||+|||.|.++..|.+... +|+-.|-. .-|..+.++- + -.-+.-.|.-+...|
T Consensus 70 ~~vLD~GCG~G~~~~~La~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 70 LRVFFPLCGKAIEMKWFADRGH---TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CeEEEeCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 4799999999999999987653 56666654 5555554431 1 011111222333322
Q ss_pred ----CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe----C-----Ch---HHHHHHHHhHhccC
Q 007645 502 ----RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----D-----SP---EVIDKVSRIANTVR 565 (595)
Q Consensus 502 ----rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r----d-----~~---~~~~~~~~~~~~~~ 565 (595)
.+||+|-+..+|.... ......++-||-|+|||||.+++- + .+ -.-++++.+... .
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~-------~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~ 218 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAIN-------PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-K 218 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSC-------GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-T
T ss_pred cccCCCEEEEEEhhhhhhCC-------HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-C
Confidence 6899999888877542 234557899999999999998642 1 00 124677777766 4
Q ss_pred ceeEEe
Q 007645 566 WTAAVH 571 (595)
Q Consensus 566 W~~~~~ 571 (595)
|++...
T Consensus 219 f~v~~~ 224 (252)
T 2gb4_A 219 CSMQCL 224 (252)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 877554
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=4e-05 Score=77.94 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=34.2
Q ss_pred CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 501 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 501 prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.+||+|.|..++...+ ..-....+..+|-++-|+|||||++|+..
T Consensus 175 ~~~fD~I~~~~vl~~ih---l~~~~~~~~~~l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 175 TPEYDVVLCLSLTKWVH---LNWGDEGLKRMFRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp CCCEEEEEEESCHHHHH---HHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcCEEEEChHHHHhh---hcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 48999999998875431 00012356679999999999999999963
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0013 Score=62.81 Aligned_cols=136 Identities=11% Similarity=0.120 Sum_probs=67.7
Q ss_pred eeEEecccchhHHHhhhcCCC--eEEEEeccCCCCCchhHHhhccchhhhcccCCCCCC-------CC----Cccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSDP--VWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFST-------YP----RTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~--vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~t-------yp----rtyDl~H~ 509 (595)
.+|||+|||.|+|+..|.... |.-+-+.|..... |+--+-.|..+. .+ ++ .+||+|-+
T Consensus 27 ~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~~~--------~v~~~~~D~~~~-~~~~~~~~~~~~~~~~~~D~Vls 97 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIA--------GVRFIRCDIFKE-TIFDDIDRALREEGIEKVDDVVS 97 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCCCT--------TCEEEECCTTSS-SHHHHHHHHHHHHTCSSEEEEEE
T ss_pred CEEEEEeecCCHHHHHHHHcCCcEEEEeccccccCC--------CeEEEEccccCH-HHHHHHHHHhhcccCCcceEEec
Confidence 689999999999999998764 3444443432111 111112222211 10 11 37999987
Q ss_pred cCcccccc--CCCCCCCCCChhhhHHhhcccccCCcEEEEeC--ChHHHHHHHHhHhccCce-eEEe-ccCCCCCCCceE
Q 007645 510 SGIESLIK--NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD--SPEVIDKVSRIANTVRWT-AAVH-DKEPGSNGREKI 583 (595)
Q Consensus 510 ~~~~s~~~--~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd--~~~~~~~~~~~~~~~~W~-~~~~-~~~~~~~~~~~~ 583 (595)
+......- ........-..+.+|-++-|+|||||.+++.- ... ...+.+.++.. ++ +.+. ..-+-+...|..
T Consensus 98 d~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~-~~~~~~~l~~~-F~~v~~~kP~asR~~s~E~y 175 (191)
T 3dou_A 98 DAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM-TNDFIAIWRKN-FSSYKISKPPASRGSSSEIY 175 (191)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH-HHHHHHHHGGG-EEEEEEECC------CCEEE
T ss_pred CCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC-HHHHHHHHHHh-cCEEEEECCCCccCCCceEE
Confidence 65322000 00000000112457788899999999999752 222 23444444433 33 2232 223334457888
Q ss_pred EEEEec
Q 007645 584 LVATKS 589 (595)
Q Consensus 584 l~~~K~ 589 (595)
+||++.
T Consensus 176 ~v~~~~ 181 (191)
T 3dou_A 176 IMFFGF 181 (191)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 888753
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00045 Score=66.84 Aligned_cols=123 Identities=7% Similarity=0.085 Sum_probs=71.7
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccch--hh-hcccCCCCCC-CC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLI--GV-YHDWCEPFST-YP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGli--g~-~~~wce~f~t-yp-rtyDl~H~~~ 511 (595)
..|||+|||.|.|+.+|... |- .+|+-.|-. .-+..+-+ .|+- -. ..|..+ ++. +| .+||.|++..
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~--~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~-l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPD--INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADT-LTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGG-HHHHCCTTSCCEEEEES
T ss_pred ceEEEEecCCCHHHHHHHHHCCC--CCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHH-HHhhcCcCCcCEEEEEC
Confidence 46999999999999988543 21 245555544 55554443 2441 11 122222 221 33 7899887532
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~ 569 (595)
. ..|........|-....+|-|+-|+|+|||.+++. |..+..+.+.+++....|+..
T Consensus 117 ~-~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g~~~~ 174 (213)
T 2fca_A 117 S-DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 174 (213)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred C-CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCccc
Confidence 1 11210000112333467899999999999999986 566666676666655556543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00033 Score=73.04 Aligned_cols=100 Identities=13% Similarity=0.203 Sum_probs=64.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhhc----cchh----hhcccCCCCCCCCCccch
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDL 506 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~wce~f~typrtyDl 506 (595)
+....-.+|+|+|||.|.++.+|.+. .+- ++-.|-+..+..+-++ |+-+ +-+|..+. .+| .+|+
T Consensus 186 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~D~ 259 (359)
T 1x19_A 186 AKLDGVKKMIDVGGGIGDISAAMLKHFPELD---STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYP-EADA 259 (359)
T ss_dssp CCCTTCCEEEEESCTTCHHHHHHHHHCTTCE---EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCC-CCSE
T ss_pred cCCCCCCEEEEECCcccHHHHHHHHHCCCCe---EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCC-CCCE
Confidence 44455689999999999999998653 221 2222333444444333 5433 12232221 233 3499
Q ss_pred hhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 507 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 507 ~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|.+..++-+|. .-....+|-++-|+|+|||.++|.|
T Consensus 260 v~~~~vlh~~~-------d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 260 VLFCRILYSAN-------EQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp EEEESCGGGSC-------HHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred EEEechhccCC-------HHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99999988773 1225678999999999999998865
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00018 Score=73.88 Aligned_cols=100 Identities=8% Similarity=0.069 Sum_probs=62.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc------------hhhhcccC--CCCC-CCC-
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL------------IGVYHDWC--EPFS-TYP- 501 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl------------ig~~~~wc--e~f~-typ- 501 (595)
..|||+|||.|+....+...... +|+=.|-. .-|..+-+| |+ .+..+.-+ +.+. .+|
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~--~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIA--LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CeEEEEecCCcHhHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 57999999999877666554433 45556654 666666555 21 11111101 2111 234
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.+||+|-|..++-..- +.-....+|-||-|+|||||++|+...
T Consensus 128 ~~FD~V~~~~~lhy~~------~~~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSF------HPRHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp SCEEEEEEESCGGGTC------STTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECchHHHhC------CHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 8999998776553211 111346899999999999999999743
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00024 Score=68.45 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=71.8
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchh---hh-cccCCCCCCCC-----Cccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG---VY-HDWCEPFSTYP-----RTYD 505 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~-~~wce~f~typ-----rtyD 505 (595)
.+|||+|||.|.++.+|... .. .|+-.|-. ..+..+-++ |+-. .+ .|..+.++..+ .+||
T Consensus 66 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 66 KKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred CEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 58999999999999998764 22 23333332 334333222 4321 11 12222222222 6899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh------------HHHHHHHH----hHhccCceeE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAA 569 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------------~~~~~~~~----~~~~~~W~~~ 569 (595)
+|..+... -....++-++=|+|||||++++.|-. .....+++ +...-+|+..
T Consensus 143 ~v~~~~~~------------~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 210 (225)
T 3tr6_A 143 LIYIDADK------------ANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMI 210 (225)
T ss_dssp EEEECSCG------------GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred EEEECCCH------------HHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEE
Confidence 99854432 23445788888999999999996422 11223333 3344457666
Q ss_pred EeccCCCCCCCceEEEEEec
Q 007645 570 VHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 570 ~~~~~~~~~~~~~~l~~~K~ 589 (595)
... . .+.+++++|+
T Consensus 211 ~lp-----~-~dG~~~~~k~ 224 (225)
T 3tr6_A 211 LIP-----I-GDGLTLARKK 224 (225)
T ss_dssp EEC-----S-TTCEEEEEEC
T ss_pred EEE-----c-CCccEEEEEC
Confidence 652 1 3567888875
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00028 Score=69.64 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=64.2
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc------------cchhh---hcccCCCCCC-CC-Cc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------------GLIGV---YHDWCEPFST-YP-RT 503 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------------Glig~---~~~wce~f~t-yp-rt 503 (595)
..|||+|||.|+|+.+|... |- .+|+-.|-. .-+..+-++ |+-.+ ..|..+.++. ++ .+
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~ 128 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPE--DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ 128 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTT--SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred CEEEEEcCCCCHHHHHHHHhCCC--CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence 58999999999999888542 11 234444433 444443322 44221 1222221221 33 67
Q ss_pred cchhhccCccc-cccCCCCCCCCCChhhhHHhhcccccCCcEEEE-eCChHHHHHHHHhHhcc
Q 007645 504 YDLIHVSGIES-LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV-RDSPEVIDKVSRIANTV 564 (595)
Q Consensus 504 yDl~H~~~~~s-~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~-rd~~~~~~~~~~~~~~~ 564 (595)
+|.|... |. .|........|--...+|-|+-|+|+|||.+++ .|..+..+.+.+.+..-
T Consensus 129 ~d~v~~~--~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~ 189 (246)
T 2vdv_E 129 LSKMFFC--FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEEH 189 (246)
T ss_dssp EEEEEEE--SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHHS
T ss_pred cCEEEEE--CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHhC
Confidence 7776522 21 110000011222235799999999999999988 47776666666554443
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00094 Score=66.19 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=57.4
Q ss_pred eeEEecccchhHHHhhhcCC--C-eEEEEeccCCC----CCchhHHhhc----cchh---h-hcc-cCCCCCCCC-Cccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--P-VWVMNVVPARK----SSTLSVIYDR----GLIG---V-YHD-WCEPFSTYP-RTYD 505 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~-vwvmnv~p~~~----~~~l~~i~eR----Glig---~-~~~-wce~f~typ-rtyD 505 (595)
..|||+|||.|.++..|.+. | .-|.-|=+... +..+..+-+| |+-. . ..| ....-..+| .+||
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD 124 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFD 124 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTCCCS
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCCCEE
Confidence 58999999999999988653 2 33333333321 2355554333 3311 1 111 111111234 7999
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+|++.+++.+.. +...++-.+.++++|||.+++.
T Consensus 125 ~v~~~~~l~~~~---------~~~~~~~~~~~l~~~gG~l~~~ 158 (275)
T 3bkx_A 125 RVVLAHSLWYFA---------SANALALLFKNMAAVCDHVDVA 158 (275)
T ss_dssp EEEEESCGGGSS---------CHHHHHHHHHHHTTTCSEEEEE
T ss_pred EEEEccchhhCC---------CHHHHHHHHHHHhCCCCEEEEE
Confidence 999999987654 1234555556666779999996
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00062 Score=67.85 Aligned_cols=137 Identities=14% Similarity=0.081 Sum_probs=79.7
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccc--hhhhcccCCCCC---CCCCccchhhcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFS---TYPRTYDLIHVS 510 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~wce~f~---typrtyDl~H~~ 510 (595)
-.+|+|+|||.|.++..|... |- ..|+-.|.. ..+.++-+ -|+ +-++|.--|.+. .+..+||+|-+.
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPE--LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTT--CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 468999999999887766432 21 123334433 44443332 254 222222222222 244799999864
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC---ChHHHHHHHHhHhccCceeEEec-c-CCCCCCCceEEE
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD---SPEVIDKVSRIANTVRWTAAVHD-K-EPGSNGREKILV 585 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd---~~~~~~~~~~~~~~~~W~~~~~~-~-~~~~~~~~~~l~ 585 (595)
.+ .++..++-++-|+|+|||.+++-. ..+.+..+++.++.+-++..... . -++....-.+++
T Consensus 159 a~-------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~~~p~~~~~R~l~~ 225 (249)
T 3g89_A 159 AV-------------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLALQLPLSGEARHLVV 225 (249)
T ss_dssp SS-------------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEEECTTTCCEEEEEE
T ss_pred Cc-------------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEeeCCCCCCcEEEEE
Confidence 32 345678889999999999988743 34556667777777777754332 1 222223345666
Q ss_pred EEeccCCC
Q 007645 586 ATKSLWKL 593 (595)
Q Consensus 586 ~~K~~w~~ 593 (595)
.+|.=.++
T Consensus 226 ~~k~~~t~ 233 (249)
T 3g89_A 226 LEKTAPTP 233 (249)
T ss_dssp EEECSCCC
T ss_pred EEeCCCCC
Confidence 77754443
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0018 Score=68.43 Aligned_cols=115 Identities=15% Similarity=0.102 Sum_probs=79.1
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-------CCeEEEEcccccCC-CC
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-------IPAFVAMLGTRRLP-FP 261 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-------~~~~~~~~d~~~LP-fp 261 (595)
+...+|. +|||+.+|.|.=+..|++.+. ...++++|+++..++..+++ + .++.+...|...++ ..
T Consensus 144 L~~~pg~--~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~ 220 (359)
T 4fzv_A 144 LGLQPGD--IVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE 220 (359)
T ss_dssp HCCCTTE--EEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS
T ss_pred hCCCCCC--EEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhc
Confidence 3444444 999999999999999988753 34688999999887766543 2 24666777766653 34
Q ss_pred CCceeEEEE----cCC----Cc-------cccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCc
Q 007645 262 AFSFDIVHC----SRC----LI-------PFTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQD 311 (595)
Q Consensus 262 d~sFDlV~~----s~v----L~-------h~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~ 311 (595)
.+.||.|++ +.. +. .+.. -...+|..+.+.|||||+++.++-...-.+++
T Consensus 221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE 293 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNE 293 (359)
T ss_dssp TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTH
T ss_pred cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCH
Confidence 578999995 321 10 1110 01267888999999999999999765555444
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00078 Score=69.44 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=53.5
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhHHh-h-ccchh--hhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSVIY-D-RGLIG--VYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~i~-e-RGlig--~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
..|||+|||.|+|+..|... .|.-+-+-...++..+..+- + .|.-+ .... ...+..-+.+||+|.|+..++.-+
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~D~~~l~~~~fD~V~sd~~~~~g~ 162 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSG-VDVFFIPPERCDTLLCDIGESSPN 162 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECS-CCTTTSCCCCCSEEEECCCCCCSS
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEec-cccccCCcCCCCEEEECCccccCc
Confidence 68999999999999988775 34333331110111111000 0 11111 1110 012221137899999887664100
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
..-+.-....+|-++-|+|||||.|++.
T Consensus 163 ---~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 163 ---PTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ---chhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 0000000114788899999999999995
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00017 Score=67.98 Aligned_cols=122 Identities=15% Similarity=0.087 Sum_probs=68.8
Q ss_pred hhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc--h
Q 007645 415 FEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL--I 487 (595)
Q Consensus 415 f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl--i 487 (595)
+...++...+.+-.+..... ...+ ..|||+|||.|.++.++.+.+.- .|+-.|-. ..+..+-++ |+ +
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~--~~~~--~~vLDlgcG~G~~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v 95 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARR--DLTG--LAVLDLYAGSGALGLEALSRGAA--SVLFVESDQRSAAVIARNIEALGLSGA 95 (189)
T ss_dssp C---CHHHHHHHHHHHHHHS--CCTT--CEEEEETCTTCHHHHHHHHTTCS--EEEEEECCHHHHHHHHHHHHHHTCSCE
T ss_pred CccCcHHHHHHHHHHHHhcc--CCCC--CEEEEeCCCcCHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 34444556665555443211 0122 57999999999999876655431 23444433 444443332 33 1
Q ss_pred hhh-cccCCCCCCC-CCccchhhccCccccccCCCCCCCCCChhhhHHhhcc--cccCCcEEEEeCC
Q 007645 488 GVY-HDWCEPFSTY-PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDR--MLRPEGTVVVRDS 550 (595)
Q Consensus 488 g~~-~~wce~f~ty-prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdR--iLRP~G~~i~rd~ 550 (595)
-++ .|..+....+ +.+||+|-++..|... .-....++-++-| +|+|||.+++...
T Consensus 96 ~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~--------~~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 96 TLRRGAVAAVVAAGTTSPVDLVLADPPYNVD--------SADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp EEEESCHHHHHHHCCSSCCSEEEECCCTTSC--------HHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred EEEEccHHHHHhhccCCCccEEEECCCCCcc--------hhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 111 1111111113 3799999987665531 1346678999988 9999999999743
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0059 Score=64.58 Aligned_cols=85 Identities=12% Similarity=0.014 Sum_probs=59.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
+.+|||+||++|.|+..|++++. .|+++|..+ ++-.......+.+.+.|...+..+.+.||+|+|-.+. +
T Consensus 212 G~~vlDLGAaPGGWT~~l~~rg~---~V~aVD~~~--l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~-----~ 281 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKRNM---WVYSVDNGP--MAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE-----K 281 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC---EEEEECSSC--CCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS-----C
T ss_pred CCEEEEeCcCCCHHHHHHHHCCC---EEEEEEhhh--cChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC-----C
Confidence 45999999999999999999965 566777643 1111223346788888888777777889999997654 4
Q ss_pred HHHHHHHHHhhcCCC
Q 007645 281 NATYLIEVDRLLRPG 295 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPG 295 (595)
+...+.-+.+.|..|
T Consensus 282 p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 282 PAKVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHhHHHHHHHHhcc
Confidence 455555555555443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00039 Score=67.24 Aligned_cols=129 Identities=13% Similarity=0.223 Sum_probs=68.0
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhh----c-cchhhhcccCCC--CCCCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYD----R-GLIGVYHDWCEP--FSTYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~e----R-Glig~~~~wce~--f~typrtyDl~H~~ 510 (595)
.+|||+|||.|.++..|.+. .|..+-+.| ..+..+.+ + ++--+..|-.+. +...+.+||+|-++
T Consensus 75 ~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~----~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSP----RVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCH----HHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCH----HHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 48999999999999888643 343333222 21211111 1 221122232221 12234689999854
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------HH-HHHHHHhHhccCceeEEe-ccCCCCC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------EV-IDKVSRIANTVRWTAAVH-DKEPGSN 578 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------~~-~~~~~~~~~~~~W~~~~~-~~~~~~~ 578 (595)
... .-....+|-++-|+|+|||.+++.-.. .+ -++++++... ++.... +.++..
T Consensus 151 ~~~-----------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--f~~~~~~~~~~~~- 216 (227)
T 1g8a_A 151 VAQ-----------PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEY--FEVIERLNLEPYE- 216 (227)
T ss_dssp CCS-----------TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTT--SEEEEEEECTTTS-
T ss_pred CCC-----------HhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHHHHhh--ceeeeEeccCccc-
Confidence 331 112234599999999999999984110 11 2456666333 776433 332221
Q ss_pred CCceEEEEEec
Q 007645 579 GREKILVATKS 589 (595)
Q Consensus 579 ~~~~~l~~~K~ 589 (595)
...-+++++|+
T Consensus 217 ~~~~~~~~~~~ 227 (227)
T 1g8a_A 217 KDHALFVVRKT 227 (227)
T ss_dssp SSEEEEEEECC
T ss_pred CCCEEEEEEeC
Confidence 22346777763
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0002 Score=69.93 Aligned_cols=118 Identities=13% Similarity=0.167 Sum_probs=65.4
Q ss_pred eeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHh----hccchhh---hcccCCCCCC-CC-Cccchhhc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIY----DRGLIGV---YHDWCEPFST-YP-RTYDLIHV 509 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~----eRGlig~---~~~wce~f~t-yp-rtyDl~H~ 509 (595)
=..|||+|||.|.++.+|... .. +|+-.|-. ..+..+. +.|+-.+ -+|-.+.++. +| .+||+|++
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~---~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~ 111 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQ---DFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCC---eEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence 357999999999999988532 22 34444443 4444433 3344211 1121111121 33 89999986
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhc
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANT 563 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~ 563 (595)
.... .|........|---..+|-|+-|+|||||.+++. |.....+.+..++.+
T Consensus 112 ~~~~-p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~ 165 (218)
T 3dxy_A 112 FFPD-PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSS 165 (218)
T ss_dssp ESCC-CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHT
T ss_pred eCCC-CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 4221 2220000011122235899999999999999987 555556666665543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00039 Score=72.25 Aligned_cols=100 Identities=24% Similarity=0.328 Sum_probs=64.0
Q ss_pred CCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhh----ccch----hhhcccCCCCCCCCCccchh
Q 007645 438 GTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD----RGLI----GVYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 438 ~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~e----RGli----g~~~~wce~f~typrtyDl~ 507 (595)
....-.+|+|+|||.|.++.+|... .+-+ +-.|-+..+..+-+ .|+- =+-+|..+ ..|..||+|
T Consensus 180 ~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~---~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~D~v 253 (360)
T 1tw3_A 180 DWTNVRHVLDVGGGKGGFAAAIARRAPHVSA---TVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFE---PLPRKADAI 253 (360)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEE---EEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTS---CCSSCEEEE
T ss_pred CCccCcEEEEeCCcCcHHHHHHHHhCCCCEE---EEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCC---CCCCCccEE
Confidence 3445578999999999999988543 2222 22222334443333 2332 12234433 356669999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
-+..++.+|. .-....+|-++-|+|+|||.+++.|.
T Consensus 254 ~~~~vl~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e~ 289 (360)
T 1tw3_A 254 ILSFVLLNWP-------DHDAVRILTRCAEALEPGGRILIHER 289 (360)
T ss_dssp EEESCGGGSC-------HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcccccCCC-------HHHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 9999887663 11224689999999999999998753
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.89 E-value=8.7e-05 Score=68.84 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=59.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchh----hhcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG----VYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig----~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|||+|||.|.++.+|...+. -+|+-.|-. ..+..+-+ .|+-. +..|+.+.++..+..||+|.++..|
T Consensus 33 ~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~~ 110 (177)
T 2esr_A 33 GRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 110 (177)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCCC
Confidence 4899999999999998877653 244555543 44444332 23321 1123322223345679999987665
Q ss_pred ccccCCCCCCCCCChhhhHHhhc--ccccCCcEEEEeCC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMD--RMLRPEGTVVVRDS 550 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmd--RiLRP~G~~i~rd~ 550 (595)
.. ...+.++-++- |+|+|||.+++...
T Consensus 111 ~~----------~~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 111 AK----------ETIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HH----------HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred Cc----------chHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 31 12344555555 99999999999743
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00051 Score=66.91 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=69.6
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhc-cchhhhcccCCC--CCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEP--FSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~wce~--f~typrtyDl~H~~~~~s 514 (595)
..|||+|||.|.|+..|.+. .|..+-+.|..-...+..+-++ ++--+..|..+. ++..+.+||+|.++.. .
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~-~ 157 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVA-Q 157 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEECCC-C
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEcCC-C
Confidence 48999999999999988653 2333322211000112223222 222222233221 1212368999986433 1
Q ss_pred cccCCCCCCCCCC-hhhhHHhhcccccCCcEEEEeCChH----------HHHHHHHhHhccCceeEE-eccCCCCCCCce
Q 007645 515 LIKNPGSNKNSCS-LVDLMVEMDRMLRPEGTVVVRDSPE----------VIDKVSRIANTVRWTAAV-HDKEPGSNGREK 582 (595)
Q Consensus 515 ~~~~~~~~~~~c~-~~~~llEmdRiLRP~G~~i~rd~~~----------~~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~ 582 (595)
.. ...++.|+-|+|+|||.+++.-... ++.+..+++...-|+... .+.+..+. .--
T Consensus 158 -----------~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~-~~~ 225 (233)
T 2ipx_A 158 -----------PDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYER-DHA 225 (233)
T ss_dssp -----------TTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECTTTSS-SEE
T ss_pred -----------ccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecCCccC-CcE
Confidence 11 1345778999999999999963221 122224556666777654 33333322 234
Q ss_pred EEEEEe
Q 007645 583 ILVATK 588 (595)
Q Consensus 583 ~l~~~K 588 (595)
+++++|
T Consensus 226 ~v~~~~ 231 (233)
T 2ipx_A 226 VVVGVY 231 (233)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555555
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00099 Score=65.78 Aligned_cols=124 Identities=14% Similarity=0.100 Sum_probs=67.1
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----------ccch--hhh-cccCCCCCC-CC-Cccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----------RGLI--GVY-HDWCEPFST-YP-RTYD 505 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----------RGli--g~~-~~wce~f~t-yp-rtyD 505 (595)
..|||+|||.|.|+..|... |- .+|+-.|-. .-|..+-+ .|+- -.+ .|.-+.++. +| .+||
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~--~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPD--TLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTT--SEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 57999999999999998653 21 133434433 33333321 1321 111 222111221 33 7999
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccC-ceeE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVR-WTAA 569 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~-W~~~ 569 (595)
+|..... ..|......+.|.....+|-|+-|+|+|||.+++. |.....+.+.+.+..-- |+..
T Consensus 126 ~v~~~~~-dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~~~f~~~ 190 (235)
T 3ckk_A 126 KMFFLFP-DPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERV 190 (235)
T ss_dssp EEEEESC-C-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTEEEE
T ss_pred EEEEeCC-CchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHCCCcccc
Confidence 9864211 12210001234445568999999999999999985 77766676666554432 5443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0031 Score=62.88 Aligned_cols=124 Identities=10% Similarity=0.097 Sum_probs=70.2
Q ss_pred CeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh-------ccch---hhhc-ccCCCCC-----CC-C
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD-------RGLI---GVYH-DWCEPFS-----TY-P 501 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e-------RGli---g~~~-~wce~f~-----ty-p 501 (595)
.-.+|||+|||.|.++..|... |- .+|+-.|-. ..+..+-+ .|+- -+++ |..+..+ .+ +
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEK--AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTT--EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 3468999999999998877543 11 234444433 33333322 2331 1222 2222111 13 3
Q ss_pred CccchhhccCcccccc---CC------CCCCCCCChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCce
Q 007645 502 RTYDLIHVSGIESLIK---NP------GSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWT 567 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~---~~------~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~ 567 (595)
.+||+|-++--|.... .+ ......+.++.++-++-|+|+|||.+++--..+.+.++.+.+..- |.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~-~~ 187 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSR-FG 187 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTTT-EE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHhc-CC
Confidence 7899999885443210 00 001234678899999999999999998865555666676666653 65
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00054 Score=68.03 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=51.9
Q ss_pred eeEEecccchhHHHhhhcCC-----CeEEEEeccCCCCCchhHHhhc-cchhhhcccCCCC--CCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPF--STYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~~~l~~i~eR-Glig~~~~wce~f--~typrtyDl~H~~~~~s 514 (595)
..|||+|||.|++++.|.+. .|..+-+-|.--..-+..+-+| .+.-+..|=.++. ...+..||+|.++-.+
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~- 156 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ- 156 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC-
T ss_pred CEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC-
Confidence 57999999999999887542 3444333221100112233333 2333333433221 1123579998755322
Q ss_pred cccCCCCCCCCCChhhhHH-hhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMV-EMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~ll-EmdRiLRP~G~~i~r 548 (595)
.....+|+ .+.|.|+|||.+++.
T Consensus 157 -----------~~~~~il~~~~~~~LkpGG~lvis 180 (232)
T 3id6_C 157 -----------PDQTDIAIYNAKFFLKVNGDMLLV 180 (232)
T ss_dssp -----------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----------hhHHHHHHHHHHHhCCCCeEEEEE
Confidence 23334555 566799999999986
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00067 Score=67.26 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=55.6
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhccc-h-hhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-I-GVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-i-g~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
..|||+|||.|.++..|... .. +|+-.|-. ..+..+-+++- + -...|. +.++.-+.+||+|.+....
T Consensus 87 ~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~~---- 158 (269)
T 1p91_A 87 TAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYAP---- 158 (269)
T ss_dssp CEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESCC----
T ss_pred CEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCCh----
Confidence 57999999999999888664 22 33334433 56666666651 0 011121 1222112789999964331
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..|-|+-|+|||||.+++.+
T Consensus 159 ------------~~l~~~~~~L~pgG~l~~~~ 178 (269)
T 1p91_A 159 ------------CKAEELARVVKPGGWVITAT 178 (269)
T ss_dssp ------------CCHHHHHHHEEEEEEEEEEE
T ss_pred ------------hhHHHHHHhcCCCcEEEEEE
Confidence 25889999999999999874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00029 Score=68.21 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=57.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-----chhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-----LIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-----lig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
.+|||+|||.|.++..|...- -+|+-.|-. ..+..+-++. +--+..|..+.+. -+.+||+|.++.++.+.
T Consensus 72 ~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~ 147 (231)
T 1vbf_A 72 QKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYE-EEKPYDRVVVWATAPTL 147 (231)
T ss_dssp CEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCG-GGCCEEEEEESSBBSSC
T ss_pred CEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccc-cCCCccEEEECCcHHHH
Confidence 489999999999999987643 244444433 5555554441 1112223333222 12689999988877643
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
. -|+-|+|+|||.+++...
T Consensus 148 ~---------------~~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 148 L---------------CKPYEQLKEGGIMILPIG 166 (231)
T ss_dssp C---------------HHHHHTEEEEEEEEEEEC
T ss_pred H---------------HHHHHHcCCCcEEEEEEc
Confidence 2 378899999999999754
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.002 Score=63.73 Aligned_cols=130 Identities=9% Similarity=0.166 Sum_probs=72.3
Q ss_pred eeeEEecccchhHHHhhhcC-----CCeEEEEeccCCCCCchhHHhhccchh---hh-cccCCCCCCC-----CCccchh
Q 007645 442 IRNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRGLIG---VY-HDWCEPFSTY-----PRTYDLI 507 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~-----~~vwvmnv~p~~~~~~l~~i~eRGlig---~~-~~wce~f~ty-----prtyDl~ 507 (595)
-++|||+|||.|.++.+|.. -.|..+-+-|.-....-..+-..|+-. ++ .|-.+.++.. +.+||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 36899999999999888854 134444444432221122222334421 11 1111212222 4789999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh------------HHHHHHHH----hHhccCceeEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------------EVIDKVSR----IANTVRWTAAVH 571 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------------~~~~~~~~----~~~~~~W~~~~~ 571 (595)
.++..... ...+|-++-|+|||||.+++.|-. .....+++ +...=++++.+.
T Consensus 141 ~~d~~~~~------------~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (242)
T 3r3h_A 141 FIDADKTN------------YLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLL 208 (242)
T ss_dssp EEESCGGG------------HHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred EEcCChHH------------hHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEE
Confidence 86654332 335777889999999999985321 11223333 334445666655
Q ss_pred ccCCCCCCCceEEEEEec
Q 007645 572 DKEPGSNGREKILVATKS 589 (595)
Q Consensus 572 ~~~~~~~~~~~~l~~~K~ 589 (595)
.. .+.++|++|+
T Consensus 209 p~------~dG~~~~~k~ 220 (242)
T 3r3h_A 209 AI------ADGMFLVQPI 220 (242)
T ss_dssp SS------SSCEEEEEEC
T ss_pred Ec------cCceEEEEEc
Confidence 22 3568888774
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00031 Score=66.92 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=57.4
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh---hhcccCCCCCCCCCccchhhccCcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
-..|||+|||.|.+++.|.... -+|+-.|-. ..+..+-++ |+-. ...|..+.+. -..+||+|.++..+
T Consensus 78 ~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~~~~~ 153 (210)
T 3lbf_A 78 QSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ-ARAPFDAIIVTAAP 153 (210)
T ss_dssp TCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG-GGCCEEEEEESSBC
T ss_pred CCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc-cCCCccEEEEccch
Confidence 3689999999999999987652 234444433 455544443 3321 1122222211 13689999998877
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
..+. + ++-|+|+|||.+++.-.
T Consensus 154 ~~~~------~---------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 154 PEIP------T---------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp SSCC------T---------HHHHTEEEEEEEEEEEC
T ss_pred hhhh------H---------HHHHhcccCcEEEEEEc
Confidence 6543 1 67899999999999643
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00088 Score=70.45 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCCeeeEEecccchhHHHhhhcCC--C--eEEEEeccCCCCCchhHHhhc-cchhhhcccCCCCCCCCCccchhhccCcc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSD--P--VWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~--~--vwvmnv~p~~~~~~l~~i~eR-Glig~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
....+.|+|+|||.|.++.+|.+. . +.+.-+ | ..+..+-++ ++-=+-+|.-+ .+|.. |+|.+..++
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~---~~p~~-D~v~~~~vl 271 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P----HVIQDAPAFSGVEHLGGDMFD---GVPKG-DAIFIKWIC 271 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTT---CCCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H----HHHHhhhhcCCCEEEecCCCC---CCCCC-CEEEEechh
Confidence 456789999999999999999542 2 333332 2 111111111 12112234333 45554 999999999
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
-+|. .-....+|-++=|.|+|||.++|.|
T Consensus 272 h~~~-------~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 272 HDWS-------DEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp GGBC-------HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hcCC-------HHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8774 1133468999999999999999964
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00086 Score=64.11 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=55.4
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhh----ccchh---hh-cccCCCCCCCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYD----RGLIG---VY-HDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~-~~wce~f~typrtyDl~H~~ 510 (595)
++|||+|||.|.++.+|... .. .|+-.|-. ..+..+-+ .|+-. ++ .|..+.++..+. ||+|.++
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 58999999999999988654 21 22233322 33333322 24321 11 122222233456 9999765
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. .......++-++-|+|||||.+++.+
T Consensus 134 ~------------~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 134 C------------DVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T------------TTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C------------ChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 22345678999999999999999954
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0015 Score=61.29 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=52.4
Q ss_pred eeEEecccchhHHHhhhcCC-------------CeEEEEeccCCCCCchhHHhhccchhhhcccCCC-C-----CCCC-C
Q 007645 443 RNIMDMNAFFGGFAAALTSD-------------PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEP-F-----STYP-R 502 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-------------~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~-f-----~typ-r 502 (595)
.+|||+|||.|.++.+|... .|..+-+.|......+.++ .. .|..+. + ..+| .
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~~~-~~------~d~~~~~~~~~~~~~~~~~ 96 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL-CP------ADVTDPRTSQRILEVLPGR 96 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCEEE-CS------CCTTSHHHHHHHHHHSGGG
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCeEE-Ee------ccCCCHHHHHHHHHhcCCC
Confidence 58999999999999888543 2444444332111111111 01 111000 0 0123 5
Q ss_pred ccchhhccCcccccc--CCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 503 TYDLIHVSGIESLIK--NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 503 tyDl~H~~~~~s~~~--~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+||+|-++..+...- .............+|-|+-|+|||||.+++.
T Consensus 97 ~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 97 RADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 899998765433100 0000000001136788999999999999997
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=8.7e-05 Score=72.49 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=59.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh---hh-cccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VY-HDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~-~~wce~f~typrtyDl~H~~~~~ 513 (595)
..|||+|||.|+++.+|.... -.|+-.|-. ..+..+-++ |+-. .+ .|..+ +. -+.+||+|.++..|
T Consensus 80 ~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLL-LA-SFLKADVVFLSPPW 154 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH-HG-GGCCCSEEEECCCC
T ss_pred CEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHH-hc-ccCCCCEEEECCCc
Confidence 579999999999999997764 344545543 444443322 3311 11 12211 11 13799999998887
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.... .....+.|+-|+|+|||.+|+..
T Consensus 155 ~~~~---------~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPD---------YATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGG---------GGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcc---------hhhhHHHHHHhhcCCcceeHHHH
Confidence 7543 22236779999999999988763
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00068 Score=74.23 Aligned_cols=94 Identities=13% Similarity=0.203 Sum_probs=59.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCCCchhH----Hhhccchh---hh-cccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKSSTLSV----IYDRGLIG---VY-HDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~~~l~~----i~eRGlig---~~-~~wce~f~typrtyDl~H~~~~~s 514 (595)
..|||+|||.|.++..|...+.. .|+-.|....+.. +.+.|+-. ++ .|+-+ + .+|..||+|-+..++.
T Consensus 160 ~~VLDiGcGtG~la~~la~~~~~--~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~-~-~~~~~fD~Ivs~~~~~ 235 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQAGAR--KIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEE-V-SLPEQVDIIISEPMGY 235 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHTTCS--EEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTT-C-CCSSCEEEEECCCCHH
T ss_pred CEEEEecCcccHHHHHHHHcCCC--EEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhh-C-ccCCCeEEEEEeCchH
Confidence 58999999999999888765531 2333333223332 33335522 22 23322 1 3467899999877765
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
++. .-.+...|.++-|+|+|||.+++
T Consensus 236 ~~~-------~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 236 MLF-------NERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHT-------CHHHHHHHHHGGGGEEEEEEEES
T ss_pred hcC-------cHHHHHHHHHHHHhcCCCCEEEE
Confidence 542 12455678899999999999985
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0012 Score=67.07 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=52.4
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCC--CC-Cch-------hHHh--hccchhhhcccCCCCCCCCCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPAR--KS-STL-------SVIY--DRGLIGVYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~--~~-~~l-------~~i~--eRGlig~~~~wce~f~typrtyDl~H~ 509 (595)
..|||+|||.|+|+..|... .|.-+-+-|.. +. +.+ ++.+ +.| |- +.++ +.+||+|-+
T Consensus 84 ~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~------D~-~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 84 GTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKV------DV-TKME--PFQADTVLC 154 (276)
T ss_dssp EEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSC------CG-GGCC--CCCCSEEEE
T ss_pred CEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccC------cH-hhCC--CCCcCEEEE
Confidence 68999999999999888664 45555555531 00 000 1111 111 11 1133 489999987
Q ss_pred cCccccccCCCCCCCCCCh-----hhhHHhhcccccCCc--EEEEe
Q 007645 510 SGIESLIKNPGSNKNSCSL-----VDLMVEMDRMLRPEG--TVVVR 548 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~-----~~~llEmdRiLRP~G--~~i~r 548 (595)
+..+.. ..-.+ ..+|-|+.|+|+||| .|++.
T Consensus 155 d~~~~~--------~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~ 192 (276)
T 2wa2_A 155 DIGESN--------PTAAVEASRTLTVLNVISRWLEYNQGCGFCVK 192 (276)
T ss_dssp CCCCCC--------SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred CCCcCC--------CchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence 655220 00001 126788999999999 88885
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0021 Score=64.35 Aligned_cols=109 Identities=11% Similarity=0.082 Sum_probs=67.4
Q ss_pred eeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc-----cch---hhhcccCCCCCCCCCccchhhcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR-----GLI---GVYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR-----Gli---g~~~~wce~f~typrtyDl~H~~ 510 (595)
-.+|||+|||.|+++..|... |- ..|+-.|-. ..+..+-++ |+- -...|..+.++ +.+||+|-++
T Consensus 111 ~~~VLD~G~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~--~~~fD~Vi~~ 186 (275)
T 1yb2_A 111 GMDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS--DQMYDAVIAD 186 (275)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC--SCCEEEEEEC
T ss_pred cCEEEEecCCCCHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCc--CCCccEEEEc
Confidence 358999999999999988653 21 133334443 555554443 421 11234333332 2689998751
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChH-HHHHHHHhHhccCcee
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE-VIDKVSRIANTVRWTA 568 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~-~~~~~~~~~~~~~W~~ 568 (595)
. -....+|-++-|+|+|||.+++.+... ..+++.+.+...-|..
T Consensus 187 -----~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 187 -----I---------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHH 231 (275)
T ss_dssp -----C---------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEE
T ss_pred -----C---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeE
Confidence 1 123468999999999999999986543 4566666555555543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0021 Score=62.47 Aligned_cols=106 Identities=9% Similarity=0.022 Sum_probs=67.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
.+|+|+|||.|.++.+|.+. ..+|+-.|-. ..+..+-++ |+-. ...|..+.+. -+..||+|-++.
T Consensus 93 ~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~-- 166 (248)
T 2yvl_A 93 KRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV-PEGIFHAAFVDV-- 166 (248)
T ss_dssp CEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC-CTTCBSEEEECS--
T ss_pred CEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc-CCCcccEEEECC--
Confidence 48999999999999988765 2355556644 566665554 3311 1223333220 126899987421
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCce
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWT 567 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~ 567 (595)
-....+|-++-|+|||||.+++... .+.+.++.+.+... |.
T Consensus 167 ------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~ 208 (248)
T 2yvl_A 167 ------------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FG 208 (248)
T ss_dssp ------------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EE
T ss_pred ------------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CC
Confidence 1334688999999999999999765 44566666655544 44
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00068 Score=65.89 Aligned_cols=93 Identities=14% Similarity=0.264 Sum_probs=58.7
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCC--CCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTY--PRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~ty--prtyDl~H~~ 510 (595)
.+|+|+|||.|.++..|... |- -+|+-.|-. ..+..+-++ |+-. ...|..+..+.. +.+||+|-++
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 133 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPE--ATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID 133 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTT--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred CEEEEecCCCcHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence 58999999999999888543 10 234444543 555555444 4321 122322222222 4689999865
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.... ....+|-++-|+|||||.+++.+
T Consensus 134 ~~~~------------~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 134 AAKG------------QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp GGGS------------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred CCHH------------HHHHHHHHHHHHcCCCeEEEEEc
Confidence 4432 34568899999999999999974
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00017 Score=65.88 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=55.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc-hhhh-cccCCCCCCCC---CccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL-IGVY-HDWCEPFSTYP---RTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl-ig~~-~~wce~f~typ---rtyDl~H~~~~ 512 (595)
.+|||+|||.|.++.+|..... +|+-.|-. ..+..+-++ |+ +-.+ .|..+..+..+ .+||+|.++..
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~ 119 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCC
Confidence 4799999999999988865432 24555544 444443332 22 1111 11111111111 27999998876
Q ss_pred cccccCCCCCCCCCChhhhHHhhc--ccccCCcEEEEeCC
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMD--RMLRPEGTVVVRDS 550 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmd--RiLRP~G~~i~rd~ 550 (595)
|. . ..+.++-++- |+|+|||.+++...
T Consensus 120 ~~--~---------~~~~~~~~~~~~~~L~~gG~~~~~~~ 148 (171)
T 1ws6_A 120 YA--M---------DLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp TT--S---------CTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred Cc--h---------hHHHHHHHHHhhcccCCCcEEEEEeC
Confidence 64 1 2234555555 99999999999743
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=68.92 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCCeeeEEecccchhHHHhhhcCC--C--eEEEEeccCCCCCchhHHhhc-cchhhhcccCCCCCCCCCccchhhccCcc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSD--P--VWVMNVVPARKSSTLSVIYDR-GLIGVYHDWCEPFSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~--~--vwvmnv~p~~~~~~l~~i~eR-Glig~~~~wce~f~typrtyDl~H~~~~~ 513 (595)
....+.|+|+|||.|.++.+|.+. . +.+.-+ | ..+..+-++ ++-=+-+|.-+ .+|.. |+|.+..++
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~---~~p~~-D~v~~~~vl 269 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P----HVISEAPQFPGVTHVGGDMFK---EVPSG-DTILMKWIL 269 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H----HHHTTCCCCTTEEEEECCTTT---CCCCC-SEEEEESCG
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H----HHHHhhhhcCCeEEEeCCcCC---CCCCC-CEEEehHHh
Confidence 456789999999999999999642 2 333322 2 111111111 12222334333 35544 999999998
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
-+|. .-....+|-++=|.|+|||.++|.|
T Consensus 270 h~~~-------d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 270 HDWS-------DQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp GGSC-------HHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCC-------HHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 8774 1234568999999999999999964
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00075 Score=70.84 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=60.9
Q ss_pred CCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhh-ccchhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~e-RGlig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
......|+|+|||.|.++.+|.+. .+-+. -.|-+..+..+-+ .++--+.+|..+ .+|. ||+|.+..++-+
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~---~~D~~~~~~~a~~~~~v~~~~~d~~~---~~~~-~D~v~~~~~lh~ 279 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGI---NFDLPQVIENAPPLSGIEHVGGDMFA---SVPQ-GDAMILKAVCHN 279 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEE---EEECHHHHTTCCCCTTEEEEECCTTT---CCCC-EEEEEEESSGGG
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEE---EeChHHHHHhhhhcCCCEEEeCCccc---CCCC-CCEEEEeccccc
Confidence 345689999999999999999643 23222 1121111211111 122222334433 3455 999999999987
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|. + -....+|-++-|+|||||.++|.|
T Consensus 280 ~~------d-~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 280 WS------D-EKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp SC------H-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC------H-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 74 1 122379999999999999999863
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=65.09 Aligned_cols=126 Identities=14% Similarity=0.223 Sum_probs=72.1
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchh---hh-c----------------ccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG---VY-H----------------DWC 494 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~-~----------------~wc 494 (595)
.+|||+|||.|.++..|... .. +|+-.|-. ..+..+-++ |+-. .. . .|-
T Consensus 62 ~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 62 KRIIEIGTFTGYSSLCFASALPEDG---KILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp SEEEEECCTTCHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred CEEEEEeCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 58999999999999888543 11 22333322 333333222 3211 00 0 122
Q ss_pred CCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC------------hHHHHHHH---
Q 007645 495 EPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------PEVIDKVS--- 558 (595)
Q Consensus 495 e~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~------------~~~~~~~~--- 558 (595)
..|++ + .+||+|.++.... ....++-++-|+|||||.+++.+- ......++
T Consensus 139 ~~f~~-~~~~fD~I~~~~~~~------------~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T 2hnk_A 139 SDFAF-GPSSIDLFFLDADKE------------NYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFN 205 (239)
T ss_dssp TTTCC-STTCEEEEEECSCGG------------GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHH
T ss_pred ccccC-CCCCcCEEEEeCCHH------------HHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHH
Confidence 22222 2 6799998654322 234678899999999999999751 12222333
Q ss_pred -HhHhccCceeEEeccCCCCCCCceEEEEEecc
Q 007645 559 -RIANTVRWTAAVHDKEPGSNGREKILVATKSL 590 (595)
Q Consensus 559 -~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~~ 590 (595)
.+...-++.+..... .+.+.+++|++
T Consensus 206 ~~~~~~~~~~~~~~p~------~~g~~~~~~~~ 232 (239)
T 2hnk_A 206 ELVYNDSLVDVSLVPI------ADGVSLVRKRL 232 (239)
T ss_dssp HHHHHCTTEEEEEECS------TTCEEEEEECC
T ss_pred HHHhhCCCeEEEEEEc------CCceEeeeehh
Confidence 344555677666632 24588888875
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.002 Score=63.27 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=67.4
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCCCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~H~~ 510 (595)
.+|+|+|||.|.++.+|... .. .|+-.|-. ..+..+-++ |+-. ...|..+.|.. .+||+|-++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~D~v~~~ 169 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVGPEG---RVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE--ENVDHVILD 169 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC--CSEEEEEEC
T ss_pred CEEEEecCCchHHHHHHHHHhCCCe---EEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC--CCcCEEEEC
Confidence 57999999999999998654 22 23333443 555555444 5433 33455555432 689998742
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVR 565 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~ 565 (595)
--....+|-++-|+|+|||.+++.. ..+...++.+.++...
T Consensus 170 --------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 170 --------------LPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK 211 (255)
T ss_dssp --------------SSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred --------------CCCHHHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 1123468999999999999999874 4455666666655554
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0015 Score=63.64 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=49.9
Q ss_pred eeEEecccchhHHHhhhcCC-C---eEEEEeccCCCCCchhHHhhc-----cchhhhcccCCCC--CCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-P---VWVMNVVPARKSSTLSVIYDR-----GLIGVYHDWCEPF--STYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~---vwvmnv~p~~~~~~l~~i~eR-----Glig~~~~wce~f--~typrtyDl~H~~~ 511 (595)
.+|||+|||.|.++..|.+. + |..+-+.| ..+..+-++ .+.-+..|..++. ..++.+||+|-.+
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAP----RIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCH----HHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC-
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCH----HHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe-
Confidence 57999999999999888653 2 33333322 222222211 1111112222210 1123689997511
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.. ..-....+|-++-|+|+|||.+++
T Consensus 151 ----~~------~~~~~~~~l~~~~~~LkpgG~l~i 176 (230)
T 1fbn_A 151 ----VA------QPNQAEILIKNAKWFLKKGGYGMI 176 (230)
T ss_dssp ----CC------STTHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cC------ChhHHHHHHHHHHHhCCCCcEEEE
Confidence 11 111235679999999999999999
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00064 Score=65.08 Aligned_cols=97 Identities=10% Similarity=0.050 Sum_probs=58.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cc----hhhh-cccCCCCCCC-CCc-cchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GL----IGVY-HDWCEPFSTY-PRT-YDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig~~-~~wce~f~ty-prt-yDl~H~~ 510 (595)
..|||+|||.|.|+..+..... -.|+-.|-. ..+..+-++ |+ +-++ .|..+..... +.+ ||+|-++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 4799999999999987554432 234455544 445444332 33 1111 1211111222 367 9999877
Q ss_pred CccccccCCCCCCCCCChhhhHHhh--cccccCCcEEEEeCCh
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRDSP 551 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEm--dRiLRP~G~~i~rd~~ 551 (595)
..|. . -....++-++ -|+|+|||.+++....
T Consensus 133 ~~~~--~--------~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 133 PPFH--F--------NLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CCSS--S--------CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CCCC--C--------ccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 6643 1 2355677777 7899999999997554
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=64.07 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=64.8
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc-----cc--h-hhhcccCCCCCCCC-Cccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR-----GL--I-GVYHDWCEPFSTYP-RTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR-----Gl--i-g~~~~wce~f~typ-rtyDl~H~ 509 (595)
.+|||+|||.|.++.+|... .. +|+-.|-. ..+..+-++ |. + -...|..+. .+| .+||+|-+
T Consensus 98 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~~~D~v~~ 172 (258)
T 2pwy_A 98 MRVLEAGTGSGGLTLFLARAVGEKG---LVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEAAYDGVAL 172 (258)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTTCEEEEEE
T ss_pred CEEEEECCCcCHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCCCcCEEEE
Confidence 58999999999999988653 22 33334433 455554444 41 1 112233332 134 68999875
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-HHHHHHHHhHhccCce
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-EVIDKVSRIANTVRWT 567 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-~~~~~~~~~~~~~~W~ 567 (595)
+ . -....+|-++-|+|+|||.+++.... +.+.++.+.+....|.
T Consensus 173 ~-----~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 173 D-----L---------MEPWKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFR 217 (258)
T ss_dssp E-----S---------SCGGGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEE
T ss_pred C-----C---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 2 1 12346899999999999999997654 3455555555444444
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.015 Score=59.36 Aligned_cols=133 Identities=11% Similarity=0.053 Sum_probs=78.0
Q ss_pred cceEEEECCCCcHHHHHHhhc----CCceEEEEeecCcHH--------------------------HHHHHHHc----CC
Q 007645 201 LRTALDMGCGVASFGGSMLSE----NILTLSFAPRDSHKA--------------------------QIQFALER----GI 246 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~----gv~~~~v~~vD~s~~--------------------------~l~~A~er----g~ 246 (595)
...|||+|+..|..+..|+.. +.....+.++|..+. .++.++++ |+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 348999999999888776542 111234555553210 12333332 43
Q ss_pred ---CeEEEEccc-ccCC-CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchh-HHHHHHH
Q 007645 247 ---PAFVAMLGT-RRLP-FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKE-WADLQAV 320 (595)
Q Consensus 247 ---~~~~~~~d~-~~LP-fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~-w~~l~~l 320 (595)
.+.++.+++ +.+| +++++||+|+.-.-. -+.....|..+.+.|+|||++++-.. .| +.. -+.+.++
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~---y~~~~~~Le~~~p~L~pGGiIv~DD~--~~---~~G~~~Av~Ef 258 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL---YESTWDTLTNLYPKVSVGGYVIVDDY--MM---CPPCKDAVDEY 258 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS---HHHHHHHHHHHGGGEEEEEEEEESSC--TT---CHHHHHHHHHH
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc---cccHHHHHHHHHhhcCCCEEEEEcCC--CC---CHHHHHHHHHH
Confidence 478888775 3454 446789999976532 11234679999999999999988653 22 122 2335556
Q ss_pred HHHcCcEEEEe--ecceeEeecc
Q 007645 321 ARALCYELIAV--DGNTVIWKKP 341 (595)
Q Consensus 321 a~~~~w~~v~~--~~~~~iw~K~ 341 (595)
.++.+++.... .....+|+|+
T Consensus 259 ~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 259 RAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHTTCCSCCEECSSSCEEEECC
T ss_pred HHhcCCceEEEEecCEEEEEEeC
Confidence 66666543333 2234567764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0011 Score=64.91 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=51.9
Q ss_pred eeEEecccchhHHHhhhc--CCCeEEEEeccCCCC-Cch-hHH---h----hccchhhhcccCCCCCCCC----Cccchh
Q 007645 443 RNIMDMNAFFGGFAAALT--SDPVWVMNVVPARKS-STL-SVI---Y----DRGLIGVYHDWCEPFSTYP----RTYDLI 507 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~--~~~vwvmnv~p~~~~-~~l-~~i---~----eRGlig~~~~wce~f~typ----rtyDl~ 507 (595)
..|||+|||.|.++.+|. .... +|+-.|-. ..+ .++ - ++|+-.+-- -+.....+| ..+|.+
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~---~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~-~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNT---FYIGIDPVKENLFDISKKIIKKPSKGGLSNVVF-VIAAAESLPFELKNIADSI 101 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTE---EEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEE-ECCBTTBCCGGGTTCEEEE
T ss_pred CEEEEEeccCcHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEE-EEcCHHHhhhhccCeEEEE
Confidence 689999999999999987 3332 44445544 443 222 2 345432211 111112224 334444
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+....+.... ...+-....+|-||-|+|||||.+++
T Consensus 102 ~~~~~~~~~~----~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 102 SILFPWGTLL----EYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp EEESCCHHHH----HHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred EEeCCCcHHh----hhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 4321111000 00112234689999999999999999
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=59.89 Aligned_cols=115 Identities=14% Similarity=0.060 Sum_probs=68.7
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHcCCC-eEEEEc-cc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALERGIP-AFVAML-GT 255 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~erg~~-~~~~~~-d~ 255 (595)
+++..+. .+.+......+. +|||+||++|.|+.+.+.+. .+..|.++|+...-.+. .++.+-+ +.+... |+
T Consensus 78 R~~~KL~-ei~~~~~l~~~~--~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv 153 (321)
T 3lkz_A 78 RGTAKLR-WLVERRFLEPVG--KVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDV 153 (321)
T ss_dssp THHHHHH-HHHHTTSCCCCE--EEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCT
T ss_pred hHHHHHH-HHHHhcCCCCCC--EEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCH
Confidence 3444444 444444455444 99999999999999887763 23478888886541100 0001111 444444 55
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCH----H---HHHHHHHhhcCCC-cEEEEEcC
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYN----A---TYLIEVDRLLRPG-GYLVISGP 303 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~----~---~~L~Ei~RvLRPG-G~lvls~p 303 (595)
..++- ..+|+|+|--. +.-. ++ . .+|.-+.+.|++| |-|++-.-
T Consensus 154 ~~l~~--~~~D~ivcDig-eSs~-~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 154 FYRPS--ECCDTLLCDIG-ESSS-SAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp TSSCC--CCCSEEEECCC-CCCS-CHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred hhCCC--CCCCEEEEECc-cCCC-ChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 55553 56999999654 2222 22 1 3556667889998 89988653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00086 Score=65.62 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=71.0
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhhh----cccCCCCCCCC-----Cccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGVY----HDWCEPFSTYP-----RTYD 505 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~~----~~wce~f~typ-----rtyD 505 (595)
++|||+|||.|.++.+|... .. .|+-.|-. ..+.++-++ |+-..+ .|..+.+...| .+||
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDG---QIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 58999999999999888653 11 22223322 344433322 432111 11111112222 6899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC------------hHHHHHHHHh----HhccCceeE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------PEVIDKVSRI----ANTVRWTAA 569 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~------------~~~~~~~~~~----~~~~~W~~~ 569 (595)
+|.++... -....++-++-|+|||||.+++.+- ......++++ ...-+++..
T Consensus 151 ~V~~d~~~------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (232)
T 3cbg_A 151 LIFIDADK------------RNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRIS 218 (232)
T ss_dssp EEEECSCG------------GGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEE
T ss_pred EEEECCCH------------HHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEE
Confidence 99765432 2345678889999999999999531 1222333333 444567666
Q ss_pred EeccCCCCCCCceEEEEEec
Q 007645 570 VHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 570 ~~~~~~~~~~~~~~l~~~K~ 589 (595)
.... .+.+.+++|+
T Consensus 219 ~lp~------~dG~~~~~~~ 232 (232)
T 3cbg_A 219 VIPL------GDGMTLALKK 232 (232)
T ss_dssp EECS------BTCEEEEEEC
T ss_pred EEEc------CCeEEEEEeC
Confidence 6522 3468888874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0011 Score=63.96 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=52.6
Q ss_pred eeEEecccchhHHHhhhcCC--C-eEEEEeccCCCC-CchhHHhhc----cc--------hhhhcccCCCCCCCCCccch
Q 007645 443 RNIMDMNAFFGGFAAALTSD--P-VWVMNVVPARKS-STLSVIYDR----GL--------IGVYHDWCEPFSTYPRTYDL 506 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~-vwvmnv~p~~~~-~~l~~i~eR----Gl--------ig~~~~wce~f~typrtyDl 506 (595)
..|||+|||.|.+++.|... + . +|+-.|-. ..+..+-++ |+ --+..|..+.+. -+.+||+
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~ 154 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVGCTG---KVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYDA 154 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHHhCCCc---EEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcCE
Confidence 48999999999999888642 1 1 23333332 334433322 11 111223322211 1368999
Q ss_pred hhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 507 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 507 ~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|+++..+. .++-++-|+|+|||.+++.-
T Consensus 155 i~~~~~~~---------------~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 155 IHVGAAAP---------------VVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp EEECSBBS---------------SCCHHHHHTEEEEEEEEEEE
T ss_pred EEECCchH---------------HHHHHHHHhcCCCcEEEEEE
Confidence 99766553 24568889999999999963
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00068 Score=70.54 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=60.6
Q ss_pred CeeeEEecccchhHHHhhhcCC-C---eEEEEeccCCCCCchhHHhh-ccchhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-P---VWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~---vwvmnv~p~~~~~~l~~i~e-RGlig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
....|+|+|||.|.++.+|.+. | +.+.-+ |. .+..+-+ .++-=+.+|..+ ..|. ||+|.+..++-+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~d~~~---~~p~-~D~v~~~~~lh~ 258 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQ----VVENLSGSNNLTYVGGDMFT---SIPN-ADAVLLKYILHN 258 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HH----HHTTCCCBTTEEEEECCTTT---CCCC-CSEEEEESCGGG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HH----HHhhcccCCCcEEEeccccC---CCCC-ccEEEeehhhcc
Confidence 4579999999999999999643 2 444433 21 1211111 122222334333 3454 999999999987
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccC---CcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRP---EGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP---~G~~i~rd 549 (595)
|. + -....+|-|+-|+||| ||.++|.|
T Consensus 259 ~~------d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 288 (352)
T 1fp2_A 259 WT------D-KDCLRILKKCKEAVTNDGKRGKVTIID 288 (352)
T ss_dssp SC------H-HHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CC------H-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 74 1 1233799999999999 99999864
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.016 Score=64.23 Aligned_cols=119 Identities=15% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc----CC--------ceEEEEeecCcHHHHHHHHHc----CCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE----NI--------LTLSFAPRDSHKAQIQFALER----GIP 247 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~----gv--------~~~~v~~vD~s~~~l~~A~er----g~~ 247 (595)
...++.+.+++....+. +|+|-.||+|+|.....+. .. ....+.|.|+++.+...|+-+ |..
T Consensus 203 ~~Vv~lmv~l~~p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~ 280 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE 280 (530)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhccCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence 45667777777665554 8999999999998765542 11 123688999999999888754 543
Q ss_pred -eEEEEcccccCCC----CCCceeEEEEcCCCcccc--------------cCH-HHHHHHHHhhcC-------CCcEEEE
Q 007645 248 -AFVAMLGTRRLPF----PAFSFDIVHCSRCLIPFT--------------AYN-ATYLIEVDRLLR-------PGGYLVI 300 (595)
Q Consensus 248 -~~~~~~d~~~LPf----pd~sFDlV~~s~vL~h~~--------------~d~-~~~L~Ei~RvLR-------PGG~lvl 300 (595)
..+...|+-..|. +...||+|+++--+..-. .+. -.++..+.+.|| |||++.+
T Consensus 281 ~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 281 YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 4566666554442 235799999987663110 011 145677777776 7999999
Q ss_pred EcCC
Q 007645 301 SGPP 304 (595)
Q Consensus 301 s~p~ 304 (595)
+.|.
T Consensus 361 VlP~ 364 (530)
T 3ufb_A 361 VVPN 364 (530)
T ss_dssp EEEH
T ss_pred Eecc
Confidence 9883
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=67.22 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=60.3
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhh----ccchhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYD----RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
.+|+|+|||.|.++.+|... |-+ +|+-.|.. .-+..+-+ .|+-..+ -+...++.-+.+||+|-++..|..-
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~-~~~d~~~~~~~~fD~Iv~~~~~~~g 274 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKI--RLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEVKGRFDMIISNPPFHDG 274 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTC--BCEEEESBHHHHHHHHHHHHHTTCCCEE-EECSTTTTCCSCEEEEEECCCCCSS
T ss_pred CeEEEecCccCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHhCCCCEE-EEccccccccCCeeEEEECCCcccC
Confidence 47999999999999988543 211 23333433 33333332 2332212 1223333235899999998887531
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
. ..+.-....+|-|+-|+|+|||.+++-.
T Consensus 275 ~----~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 303 (343)
T 2pjd_A 275 M----QTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (343)
T ss_dssp S----HHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred c----cCCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 0 0011234678999999999999999863
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0087 Score=69.29 Aligned_cols=116 Identities=12% Similarity=0.168 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----------cc--h
Q 007645 421 RWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----------GL--I 487 (595)
Q Consensus 421 ~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----------Gl--i 487 (595)
....+++...+.+.. . .-..|||+|||.|.++.+|...---.-.|+-.|-. ..|..+-+| |+ |
T Consensus 705 L~eqRle~LLelL~~--~--~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nV 780 (950)
T 3htx_A 705 LSKQRVEYALKHIRE--S--SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780 (950)
T ss_dssp HHHHHHHHHHHHHHH--S--CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEE
T ss_pred HHHHHHHHHHHHhcc--c--CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCce
Confidence 344455544444431 1 23689999999999999997753101133444433 555555442 43 1
Q ss_pred hhhcccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 488 GVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 488 g~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-.++.=-+.++.-..+||+|.+..++.++. .=....++-||-|+|||| .+|+.
T Consensus 781 efiqGDa~dLp~~d~sFDlVV~~eVLeHL~-------dp~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHME-------EDQACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp EEEESCTTSCCTTSCSCCEEEEESCGGGSC-------HHHHHHHHHHHHHTTCCS-EEEEE
T ss_pred EEEECchHhCCcccCCeeEEEEeCchhhCC-------hHHHHHHHHHHHHHcCCC-EEEEE
Confidence 112111122333348999999999998764 112335788999999999 77775
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0033 Score=61.80 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=32.2
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
.+||+|-++-.|........+...-....++-++-|+|+|||++++.+..
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS 216 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence 48999998866653320000000122347888999999999999996554
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0049 Score=60.11 Aligned_cols=127 Identities=14% Similarity=0.092 Sum_probs=71.1
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHh----hccch-hhh----cccCCCCCCC-CCccchhh
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIY----DRGLI-GVY----HDWCEPFSTY-PRTYDLIH 508 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~----eRGli-g~~----~~wce~f~ty-prtyDl~H 508 (595)
.+|||+|||.|.++.+|... .- .|+-.|-. ..+.++- +.|+- .-+ .|-.+..+.. +.+||+|-
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~ 134 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNT---TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVF 134 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTS---EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEE
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEE
Confidence 38999999999998887541 21 22233322 3333322 22332 111 1111222334 37899997
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC------------hHHHHHHHHhHhccCce----eEEec
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------PEVIDKVSRIANTVRWT----AAVHD 572 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~------------~~~~~~~~~~~~~~~W~----~~~~~ 572 (595)
++.... ....++-++-|+|||||.+++.|- ......++++.+.++++ +.+.
T Consensus 135 ~d~~~~------------~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l- 201 (221)
T 3dr5_A 135 GQVSPM------------DLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARL- 201 (221)
T ss_dssp ECCCTT------------THHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEE-
T ss_pred EcCcHH------------HHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEe-
Confidence 553322 344578889999999999998521 12233455555555554 3333
Q ss_pred cCCCCCCCceEEEEEecc
Q 007645 573 KEPGSNGREKILVATKSL 590 (595)
Q Consensus 573 ~~~~~~~~~~~l~~~K~~ 590 (595)
| ..+.++|++|.+
T Consensus 202 ----p-~gdGl~~~~~~~ 214 (221)
T 3dr5_A 202 ----P-LGAGLTVVTKAL 214 (221)
T ss_dssp ----S-STTCEEEEEECC
T ss_pred ----e-ccchHHHHHHHH
Confidence 1 245788898875
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.00087 Score=62.14 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=55.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccch---hh-hcccCCCCCCC---CCccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI---GV-YHDWCEPFSTY---PRTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli---g~-~~~wce~f~ty---prtyDl~H~~ 510 (595)
.+|||+|||.|.++.++...+. -+|+-.|-. ..+..+-+ .|+- -+ ..|+.+..... +.+||+|-++
T Consensus 46 ~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 46 GMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 5899999999999987765542 133444433 33333222 2321 11 12222211111 4689999987
Q ss_pred CccccccCCCCCCCCCChhhhHHhh--cccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEm--dRiLRP~G~~i~rd 549 (595)
..|.. -....++-++ -|+|+|||.+++..
T Consensus 124 ~~~~~----------~~~~~~~~~l~~~~~L~~gG~l~~~~ 154 (187)
T 2fhp_A 124 PPYAK----------QEIVSQLEKMLERQLLTNEAVIVCET 154 (187)
T ss_dssp CCGGG----------CCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred CCCCc----------hhHHHHHHHHHHhcccCCCCEEEEEe
Confidence 76541 1234555555 99999999999973
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.011 Score=59.48 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=63.7
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCc--eEEEEeecCcHHHHHHHHH-cCCCe-EEEEc-c
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NIL--TLSFAPRDSHKAQIQFALE-RGIPA-FVAML-G 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~--~~~v~~vD~s~~~l~~A~e-rg~~~-~~~~~-d 254 (595)
..+..-+.+|.+..-..+ ..+|||+||+.|+|+.+.+++ ++. ...+.++|.+.. ..... .|.++ .+.++ |
T Consensus 56 SRAayKL~EIdeK~likp--g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~--P~~~~~~Gv~~i~~~~G~D 131 (269)
T 2px2_A 56 SRGTAKLRWLVERRFVQP--IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE--PMLMQSYGWNIVTMKSGVD 131 (269)
T ss_dssp STHHHHHHHHHHTTSCCC--CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCC--CCCCCSTTGGGEEEECSCC
T ss_pred cHHHHHHHHHHHcCCCCC--CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccC--CCcccCCCceEEEeeccCC
Confidence 334333455555543344 449999999999999999886 221 112334442100 00000 12222 33334 6
Q ss_pred cccCCCCCCceeEEEEcCCCc--ccccCHH---HHHHHHHhhcCCCc-EEEEEc
Q 007645 255 TRRLPFPAFSFDIVHCSRCLI--PFTAYNA---TYLIEVDRLLRPGG-YLVISG 302 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~--h~~~d~~---~~L~Ei~RvLRPGG-~lvls~ 302 (595)
...+ +...+|+|+|-.+-. +..-|.. .+|.-+.++|+||| .|++-.
T Consensus 132 f~~~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKV 183 (269)
T 2px2_A 132 VFYK--PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKI 183 (269)
T ss_dssp GGGS--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred ccCC--CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 6654 346799999954332 1111112 24555668999999 898866
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0023 Score=59.26 Aligned_cols=84 Identities=14% Similarity=0.245 Sum_probs=53.7
Q ss_pred CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChH----------HHHHHHHhHhccCceeEEe
Q 007645 502 RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE----------VIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 502 rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~----------~~~~~~~~~~~~~W~~~~~ 571 (595)
.+||+|.+..++.+.. -+...+|-|+-|+|||||.+++.+... -.+++.++++.--+ +.+.
T Consensus 62 ~~fD~V~~~~~l~~~~--------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~~~ 132 (176)
T 2ld4_A 62 SSFDIILSGLVPGSTT--------LHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VEVK 132 (176)
T ss_dssp SCEEEEEECCSTTCCC--------CCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EEEE
T ss_pred CCEeEEEECChhhhcc--------cCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cEee
Confidence 8999999988776541 235789999999999999999963211 14556665554444 3333
Q ss_pred ccCCCCCC------------------CceEEEEEeccCCCC
Q 007645 572 DKEPGSNG------------------REKILVATKSLWKLP 594 (595)
Q Consensus 572 ~~~~~~~~------------------~~~~l~~~K~~w~~~ 594 (595)
+....+.. .--+++++|+-|...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~Kp~~~~g 173 (176)
T 2ld4_A 133 ELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVG 173 (176)
T ss_dssp EEEEECCCHHHHHHHHHHTCCCCSSEEEEEEEEECCCSSCC
T ss_pred cCcccCCCHHHHHHHHHHhcccCCceEEEEEeccCCccccc
Confidence 22110111 134788999988653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.002 Score=65.51 Aligned_cols=135 Identities=14% Similarity=0.216 Sum_probs=80.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCCCcc---chhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPRTY---DLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typrty---Dl~H~~ 510 (595)
.+|+|+|||.|.++.+|...|- .+|+-.|-. ..|.++-++ |+-. +..||.+.+ +.+| |+|-++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~---~~~f~~~D~Ivsn 199 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSD--AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF---KEKFASIEMILSN 199 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSS--CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG---GGGTTTCCEEEEC
T ss_pred CEEEEEeCchhHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc---ccccCCCCEEEEc
Confidence 4799999999999999866532 234444543 555554432 4421 234555433 3578 999877
Q ss_pred CccccccC---------CC-CCCCCCChhhhHHhhc-ccccCCcEEEEeCChHHHHHHHHhHhccCceeEEeccCCCCCC
Q 007645 511 GIESLIKN---------PG-SNKNSCSLVDLMVEMD-RMLRPEGTVVVRDSPEVIDKVSRIANTVRWTAAVHDKEPGSNG 579 (595)
Q Consensus 511 ~~~s~~~~---------~~-~~~~~c~~~~~llEmd-RiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~ 579 (595)
--+....+ |. +.-..++-.+++-++= |.|+|||++++--..+.-+.+.++.... ....| -.+
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q~~~v~~~~~~~---~~~~D----~~g 272 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQVEELKKIVSDT---VFLKD----SAG 272 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCHHHHTTTSTTC---EEEEC----TTS
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHHhC---Ceecc----cCC
Confidence 33332110 00 0001122336788898 9999999999975555566777776665 22232 224
Q ss_pred CceEEEEEec
Q 007645 580 REKILVATKS 589 (595)
Q Consensus 580 ~~~~l~~~K~ 589 (595)
.+++++++++
T Consensus 273 ~~R~~~~~~k 282 (284)
T 1nv8_A 273 KYRFLLLNRR 282 (284)
T ss_dssp SEEEEEEECC
T ss_pred CceEEEEEEc
Confidence 6788888775
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.005 Score=62.31 Aligned_cols=139 Identities=14% Similarity=0.065 Sum_probs=73.8
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc-----cc-----------hhhh-cccCCCCCCCCCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR-----GL-----------IGVY-HDWCEPFSTYPRT 503 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR-----Gl-----------ig~~-~~wce~f~typrt 503 (595)
-++|||+|||.|+++..|.+.+. .+|+-+|-. .-+.++-++ |+ +-++ .|-.+.... +.+
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~ 152 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRG 152 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCC
T ss_pred CCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cCC
Confidence 36899999999999999987653 233333322 333333222 22 0011 111000111 578
Q ss_pred cchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCceeEEec--cCCC
Q 007645 504 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHD--KEPG 576 (595)
Q Consensus 504 yDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~~~~~~--~~~~ 576 (595)
||+|-++... ++. ....-....++-++-|+|+|||.+++.. ..+.+..+.+.++..--.+.... ...+
T Consensus 153 fD~Ii~d~~~-~~~----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~v~~~~~~vP~~ 227 (281)
T 1mjf_A 153 FDVIIADSTD-PVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDRVYYYSFPVIGY 227 (281)
T ss_dssp EEEEEEECCC-CC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSEEEEEEECCTTS
T ss_pred eeEEEECCCC-CCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCceEEEEEecCCC
Confidence 9999976432 221 0011112567889999999999999962 33444555444443322333221 1222
Q ss_pred CCCCceEEEEEec
Q 007645 577 SNGREKILVATKS 589 (595)
Q Consensus 577 ~~~~~~~l~~~K~ 589 (595)
.+...++++.|.
T Consensus 228 -~g~~~~~~as~~ 239 (281)
T 1mjf_A 228 -ASPWAFLVGVKG 239 (281)
T ss_dssp -SSSEEEEEEEES
T ss_pred -CceEEEEEeeCC
Confidence 334567888876
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=61.51 Aligned_cols=126 Identities=18% Similarity=0.123 Sum_probs=70.7
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhhh----cccCCCCCCCC-----Cccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGVY----HDWCEPFSTYP-----RTYD 505 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~~----~~wce~f~typ-----rtyD 505 (595)
++|||+|||.|.++.+|... .. .|+-.|-. ..+..+-++ |+-.-+ .|..+.+...+ .+||
T Consensus 71 ~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 71 KKALDLGTFTGYSALALALALPADG---RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 58999999999999888653 21 22333322 334433322 431111 11111111111 6899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC------------hHHHHHHHH----hHhccCceeE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS------------PEVIDKVSR----IANTVRWTAA 569 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~------------~~~~~~~~~----~~~~~~W~~~ 569 (595)
+|.++.. .-....++-++=|+|||||.+++.+- ......+++ +...=++++.
T Consensus 148 ~v~~d~~------------~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 215 (229)
T 2avd_A 148 VAVVDAD------------KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS 215 (229)
T ss_dssp EEEECSC------------STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred EEEECCC------------HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEE
Confidence 9986543 23345688899999999999999531 122333333 3444556666
Q ss_pred EeccCCCCCCCceEEEEEec
Q 007645 570 VHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 570 ~~~~~~~~~~~~~~l~~~K~ 589 (595)
.... .+.++|++|.
T Consensus 216 ~lp~------~dGl~~~~k~ 229 (229)
T 2avd_A 216 LLPL------GDGLTLAFKI 229 (229)
T ss_dssp EECS------TTCEEEEEEC
T ss_pred EEec------CCceEEEEEC
Confidence 6522 3568888873
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0048 Score=61.69 Aligned_cols=106 Identities=14% Similarity=0.147 Sum_probs=67.5
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCC-Cccchhhcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYP-RTYDLIHVS 510 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typ-rtyDl~H~~ 510 (595)
.+|||+|||.|.++.+|... |- .+|+-.|-. ..+..+-++ |+-. ...|..+. +| .+||+|-++
T Consensus 114 ~~VLDiG~G~G~~~~~la~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~D~V~~~ 188 (277)
T 1o54_A 114 DRIIDTGVGSGAMCAVLARAVGSS--GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---FDEKDVDALFLD 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHTTTT--CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---CSCCSEEEEEEC
T ss_pred CEEEEECCcCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---ccCCccCEEEEC
Confidence 48999999999999888653 11 134445543 555555444 4311 22344443 34 689998742
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCce
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWT 567 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~ 567 (595)
- -....+|-++-|+|+|||.+++.+. .+.+.++.+.+....|.
T Consensus 189 ~--------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 189 V--------------PDPWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFI 232 (277)
T ss_dssp C--------------SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEE
T ss_pred C--------------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCc
Confidence 1 1224688999999999999999765 34556666666555565
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0016 Score=62.11 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=55.0
Q ss_pred eeEEecccchhHHHhhhcCCC---eEEEEeccCCCC-CchhHHhhc----cchh---hhcccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDP---VWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~---vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~wce~f~typrtyDl~H~~~ 511 (595)
.+|||+|||.|.+++.|...- . +|+-.|-. ..+..+-++ |+-. ...|..+.+. -+.+||+|.+..
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~v~~~~ 154 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVGEDG---LVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE-PLAPYDRIYTTA 154 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG-GGCCEEEEEESS
T ss_pred CEEEEECCCccHHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-CCCCeeEEEECC
Confidence 589999999999998885421 1 23333332 445444443 3211 1122222222 126899999887
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP 551 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~ 551 (595)
.+.+.. -++-|+|||||.+++.-..
T Consensus 155 ~~~~~~---------------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 155 AGPKIP---------------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp BBSSCC---------------HHHHHTEEEEEEEEEEESS
T ss_pred chHHHH---------------HHHHHHcCCCcEEEEEECC
Confidence 776432 2788999999999987443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0047 Score=61.35 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=59.6
Q ss_pred cCCCCeeeEEecccchhHHHhhhcC-----CCeEEEEeccCCCCCchhHHhhcc-chhhhcccCCCCCCCC---Cccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRG-LIGVYHDWCEPFSTYP---RTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~-----~~vwvmnv~p~~~~~~l~~i~eRG-lig~~~~wce~f~typ---rtyDl~ 507 (595)
++.| -.|||+|||.|.|+..|.+ -.|....+.|.-...-...+-+|+ +.-+..|-+.+ ..|| .++|+|
T Consensus 75 ikpG--~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p-~~~~~~~~~vDvV 151 (233)
T 4df3_A 75 VKEG--DRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFP-EKYRHLVEGVDGL 151 (233)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCG-GGGTTTCCCEEEE
T ss_pred CCCC--CEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCc-cccccccceEEEE
Confidence 4556 4899999999999999964 236666555432211222333444 33334343332 1222 678877
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.++-.+ .=....+|.|+-|+|+|||.++|.
T Consensus 152 f~d~~~-----------~~~~~~~l~~~~r~LKpGG~lvI~ 181 (233)
T 4df3_A 152 YADVAQ-----------PEQAAIVVRNARFFLRDGGYMLMA 181 (233)
T ss_dssp EECCCC-----------TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEeccC-----------ChhHHHHHHHHHHhccCCCEEEEE
Confidence 643111 123456889999999999999986
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0034 Score=64.81 Aligned_cols=90 Identities=11% Similarity=0.087 Sum_probs=50.0
Q ss_pred eeEEecccchhHHHhhhcCC--C-eEEEEeccCCCC-CchhHHhhcc--------------c---hh-hhcccCCCCCCC
Q 007645 443 RNIMDMNAFFGGFAAALTSD--P-VWVMNVVPARKS-STLSVIYDRG--------------L---IG-VYHDWCEPFSTY 500 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~-vwvmnv~p~~~~-~~l~~i~eRG--------------l---ig-~~~~wce~f~ty 500 (595)
.+|||+|||.|.++.+|... + . .|+-.|-. ..+..+-++. + +- ...|..+....+
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~ 183 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI 183 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTC---EEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCc---eEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence 58999999999999988652 2 2 12222322 3333333321 0 11 122333322233
Q ss_pred C-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 501 P-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 501 p-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
| .+||+|.++. ... ..+|-++-|+|||||.+++..
T Consensus 184 ~~~~fD~V~~~~-~~~-------------~~~l~~~~~~LkpgG~lv~~~ 219 (336)
T 2b25_A 184 KSLTFDAVALDM-LNP-------------HVTLPVFYPHLKHGGVCAVYV 219 (336)
T ss_dssp ----EEEEEECS-SST-------------TTTHHHHGGGEEEEEEEEEEE
T ss_pred CCCCeeEEEECC-CCH-------------HHHHHHHHHhcCCCcEEEEEe
Confidence 4 5899998632 121 227889999999999999864
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0017 Score=62.88 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=52.2
Q ss_pred eeEEecccchhHHHhhhcCC-Ce----EEEEeccCCCC-CchhHHhhc----c--------chhhhcccCCCCCCCCCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PV----WVMNVVPARKS-STLSVIYDR----G--------LIGVYHDWCEPFSTYPRTY 504 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~v----wvmnv~p~~~~-~~l~~i~eR----G--------lig~~~~wce~f~typrty 504 (595)
..|||+|||.|.+++.|... +. +.-.|+-.|-. ..+..+-++ | +--...|..+.++. ..+|
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~f 164 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPY 164 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSE
T ss_pred CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc-CCCc
Confidence 47999999999999988652 10 00022222322 333333322 2 11112233332221 2689
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|+|++...+.. ++-++-|+|+|||.+++.-
T Consensus 165 D~I~~~~~~~~---------------~~~~~~~~LkpgG~lvi~~ 194 (227)
T 1r18_A 165 NAIHVGAAAPD---------------TPTELINQLASGGRLIVPV 194 (227)
T ss_dssp EEEEECSCBSS---------------CCHHHHHTEEEEEEEEEEE
T ss_pred cEEEECCchHH---------------HHHHHHHHhcCCCEEEEEE
Confidence 99997666542 4468889999999999863
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.016 Score=59.06 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=42.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE 243 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e 243 (595)
+++.+.+.+....+. .+||.+||.|..+..|++++ ..+.++|.++.+++.|++
T Consensus 10 Ll~e~le~L~~~~gg--~~VD~T~G~GGHS~~il~~~---g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 10 LYQEALDLLAVRPGG--VYVDATLGGAGHARGILERG---GRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp THHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCC--EEEEeCCCCcHHHHHHHHCC---CEEEEEeCCHHHHHHHHh
Confidence 344555566555544 89999999999999999983 378899999999999987
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0025 Score=64.17 Aligned_cols=108 Identities=15% Similarity=0.218 Sum_probs=62.3
Q ss_pred eeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchhHHhh----ccc---hhhhcccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYD----RGL---IGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~~i~e----RGl---ig~~~~wce~f~typrtyDl~H~~~ 511 (595)
.+|+|+|||.|+|+..|... .|..+-+.| .-+..+-+ .|+ .-+..|..+ ++ .+.+||+|-++.
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~----~av~~a~~n~~~n~l~~~~~~~~d~~~-~~-~~~~~D~Vi~d~ 194 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP----TAYHYLCENIKLNKLNNVIPILADNRD-VE-LKDVADRVIMGY 194 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH----HHHHHHHHHHHHTTCSSEEEEESCGGG-CC-CTTCEEEEEECC
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCEEEEECChHH-cC-ccCCceEEEECC
Confidence 58999999999999888653 233332222 22322221 232 111112222 21 256899986443
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh-------HHHHHHHHhHhccCceeE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP-------EVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~-------~~~~~~~~~~~~~~W~~~ 569 (595)
.. ....+|.++-|.|+|||.+++.+.. ...+.++.+.+.+.+++.
T Consensus 195 p~-------------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (272)
T 3a27_A 195 VH-------------KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKLI 246 (272)
T ss_dssp CS-------------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEEE
T ss_pred cc-------------cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCeeE
Confidence 22 4566899999999999999997443 233445555555555544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.009 Score=60.31 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=75.5
Q ss_pred CeeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc------cc----hhhh-cccCCCCCCCCCccchh
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL----IGVY-HDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig~~-~~wce~f~typrtyDl~ 507 (595)
.-++|||+|||.|+++..+.+. ++-. |+-++-. .-+.++-+. |+ +-++ .|-.+.....+.+||+|
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~--v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKK--ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSE--EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCce--EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 4589999999999999999876 4422 2222221 233322221 11 0111 11111011225789999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCceeEEec--cCCCCCCC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHD--KEPGSNGR 580 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~~~~~~--~~~~~~~~ 580 (595)
-++... .+. ....-....++-++-|+|+|||.+++.. ..+.+..+.+.+++.=-.+.... ....+.+.
T Consensus 153 i~d~~~-~~~----~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~~~g~ 227 (275)
T 1iy9_A 153 MVDSTE-PVG----PAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGL 227 (275)
T ss_dssp EESCSS-CCS----CCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGC
T ss_pred EECCCC-CCC----cchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeEEEEEecCcccCcc
Confidence 975432 221 1111223568889999999999999973 23344455444444422333321 12222234
Q ss_pred ceEEEEEecc
Q 007645 581 EKILVATKSL 590 (595)
Q Consensus 581 ~~~l~~~K~~ 590 (595)
..++++.|++
T Consensus 228 w~~~~ask~~ 237 (275)
T 1iy9_A 228 WTFTIGSKKY 237 (275)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEeeCCC
Confidence 5677888763
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0062 Score=60.33 Aligned_cols=93 Identities=11% Similarity=0.131 Sum_probs=53.5
Q ss_pred eeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHh----hccchh---hh-cccCCCCCCC------CCc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIY----DRGLIG---VY-HDWCEPFSTY------PRT 503 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~----eRGlig---~~-~~wce~f~ty------prt 503 (595)
-++|||+|||.|.++..|... .. .|+-.|-. ..+.++- +.|+-. ++ .|..+..+.. +.+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 156 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence 368999999999998877532 21 22223322 3333322 224311 11 1111111222 478
Q ss_pred cchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 504 YDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 504 yDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
||+|-++... -....++-++-|+|||||.+++.+
T Consensus 157 fD~V~~d~~~------------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDADK------------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSCS------------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCch------------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999755321 234568888999999999999863
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0021 Score=64.87 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=59.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCC-C-CchhHHhhc---------cc-------h-hhhcccCCCCCCC---
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARK-S-STLSVIYDR---------GL-------I-GVYHDWCEPFSTY--- 500 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~-~-~~l~~i~eR---------Gl-------i-g~~~~wce~f~ty--- 500 (595)
++|||+|||.|.++.+|..... -.|+-+|- . ..+..+-++ |+ + -...+|.+.....
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC 158 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence 5899999999999888866532 13444444 2 444433222 22 1 1224677654332
Q ss_pred --CCccchhhccCccccccCCCCCCCCCChhhhHHhhccccc---C--CcEEEE
Q 007645 501 --PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLR---P--EGTVVV 547 (595)
Q Consensus 501 --prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLR---P--~G~~i~ 547 (595)
+.+||+|-+..++-+. -....+|-++.|+|+ | ||.+++
T Consensus 159 ~~~~~fD~Ii~~dvl~~~---------~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 159 TGLQRFQVVLLADLLSFH---------QAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp HSCSSBSEEEEESCCSCG---------GGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred ccCCCCCEEEEeCcccCh---------HHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 3789999876665432 346789999999999 9 995443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0034 Score=65.40 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=66.9
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh-hhcccCCCCCCC-------CCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG-VYHDWCEPFSTY-------PRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig-~~~~wce~f~ty-------prtyDl~H~ 509 (595)
..|||++||.|+|+.++..... .|+-+|.. ..|..+-++ |+-. -..-.|.-...+ ..+||+|=+
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~ 231 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 231 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence 4799999999999998876543 55666654 445444332 3311 011111111111 358999876
Q ss_pred cCc-cccccCCCCC--CCCCChhhhHHhhcccccCCcEEEEeC-------ChHHHHHHHHhHhccCceeE
Q 007645 510 SGI-ESLIKNPGSN--KNSCSLVDLMVEMDRMLRPEGTVVVRD-------SPEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 510 ~~~-~s~~~~~~~~--~~~c~~~~~llEmdRiLRP~G~~i~rd-------~~~~~~~~~~~~~~~~W~~~ 569 (595)
+-- |..-. ..+ ...-....+|-++-|+|+|||++++.. ...+.+.+++.+.....++.
T Consensus 232 dPP~~~~~~--~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 232 DPPKFGRGT--HGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp CCCSEEECT--TCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred CCccccCCc--hHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 543 22100 000 000124578889999999999977742 22334445555556655554
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0021 Score=67.03 Aligned_cols=93 Identities=15% Similarity=0.249 Sum_probs=59.4
Q ss_pred CeeeEEecccchhHHHhhhcCC-C---eEEEEeccCCCCCchhHHhh-ccchhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 441 AIRNIMDMNAFFGGFAAALTSD-P---VWVMNVVPARKSSTLSVIYD-RGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 441 ~~RnvmDm~~~~g~faa~l~~~-~---vwvmnv~p~~~~~~l~~i~e-RGlig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
...+|+|+|||.|.++.+|.+. | +.+.-+ | ..+..+-+ .++--+-+|..+ ..| .||+|.+..++-+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~d~~~---~~~-~~D~v~~~~vlh~ 263 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P----QVVGNLTGNENLNFVGGDMFK---SIP-SADAVLLKWVLHD 263 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H----HHHSSCCCCSSEEEEECCTTT---CCC-CCSEEEEESCGGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H----HHHhhcccCCCcEEEeCccCC---CCC-CceEEEEcccccC
Confidence 4579999999999999999643 2 333332 2 11111111 122222334433 345 4999999999987
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccC---CcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRP---EGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP---~G~~i~rd 549 (595)
|. + =....+|-++-|+|+| ||.++|-|
T Consensus 264 ~~------d-~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 264 WN------D-EQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp SC------H-HHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred CC------H-HHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 74 1 1233799999999999 99999853
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0051 Score=65.21 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=64.6
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccc-hhhhcccCCC-C---CCC---CCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL-IGVYHDWCEP-F---STY---PRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl-ig~~~~wce~-f---~ty---prtyDl~H~ 509 (595)
.+|||++||.|+|+.++..... -.|+-.|.. ..+..+-+ .|+ -+-..-.+.- + ... ..+||+|.+
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~ 299 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999998876531 123333332 33333222 133 1111111111 1 111 358999998
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh------HHHHHHHHhHhccC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP------EVIDKVSRIANTVR 565 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~------~~~~~~~~~~~~~~ 565 (595)
+--+.................++.++=|+|+|||.+++.... +..+.+++.+....
T Consensus 300 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g 361 (396)
T 3c0k_A 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAG 361 (396)
T ss_dssp CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcC
Confidence 743321100000112245568899999999999999996332 33444554544443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0071 Score=60.96 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=60.9
Q ss_pred CCeeeEEecccch---hHHHhhhcC-CCeEEEEeccCCCC-CchhHHhhc----cchh-hhcccCCC-----C----CCC
Q 007645 440 PAIRNIMDMNAFF---GGFAAALTS-DPVWVMNVVPARKS-STLSVIYDR----GLIG-VYHDWCEP-----F----STY 500 (595)
Q Consensus 440 ~~~RnvmDm~~~~---g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~eR----Glig-~~~~wce~-----f----~ty 500 (595)
..++.|||+|||. |.++..+.. .|= ..|+=.|-. ..|..+-++ +-+- +-.|..+. . .++
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~--~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 153 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPD--ARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMI 153 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTT--CEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHC
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCC--CEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccC
Confidence 3579999999999 988765532 111 133434432 444433322 1010 11111110 0 123
Q ss_pred C-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 501 P-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 501 p-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
| .+||+|=+..++-++. +. ....+|-|+-|+|+|||++++.+
T Consensus 154 d~~~~d~v~~~~vlh~~~------d~-~~~~~l~~~~~~L~pGG~l~i~~ 196 (274)
T 2qe6_A 154 DFSRPAAIMLVGMLHYLS------PD-VVDRVVGAYRDALAPGSYLFMTS 196 (274)
T ss_dssp CTTSCCEEEETTTGGGSC------TT-THHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCCEEEEEechhhhCC------cH-HHHHHHHHHHHhCCCCcEEEEEE
Confidence 4 4789998888877664 33 57789999999999999999974
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.007 Score=61.76 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=73.1
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc------cc----hhh-hcccCCCCCCCCCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL----IGV-YHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig~-~~~wce~f~typrtyDl~H~ 509 (595)
++|||+|||.|+++..|.+. ++. +|+-+|-. .-+.++-++ |+ +-+ ..|..+.....+.+||+|-+
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVE--KAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCS--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCC--EEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 78999999999999999876 432 33333332 333333221 11 001 11111111223578999987
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCceeEEec--cCCCCCCCce
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAVHD--KEPGSNGREK 582 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~~~~~~--~~~~~~~~~~ 582 (595)
+. +..+..+ ...-....++-++-|+|+|||.+++.- ..+....+.+.+++.--.+.... ....+.+...
T Consensus 170 d~-~~~~~~~---~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~~~~~~vp~~p~g~~~ 245 (296)
T 1inl_A 170 DS-TDPTAGQ---GGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLGFMTTYPSGMWS 245 (296)
T ss_dssp EC--------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEEECTTSTTSEEE
T ss_pred cC-CCcccCc---hhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCCceEEEEeecCccCCCceE
Confidence 53 2221100 011122578889999999999999972 22333343333333322333321 1222334556
Q ss_pred EEEEEecc
Q 007645 583 ILVATKSL 590 (595)
Q Consensus 583 ~l~~~K~~ 590 (595)
++++.|++
T Consensus 246 f~~as~~~ 253 (296)
T 1inl_A 246 YTFASKGI 253 (296)
T ss_dssp EEEEESSC
T ss_pred EEEecCCC
Confidence 78888864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0019 Score=62.33 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=52.4
Q ss_pred eeEEecccchhHHHhhhcCC------CeEEEEeccCCCC-CchhHHhhc----cc----hh----hhcccCCCCC---CC
Q 007645 443 RNIMDMNAFFGGFAAALTSD------PVWVMNVVPARKS-STLSVIYDR----GL----IG----VYHDWCEPFS---TY 500 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~------~vwvmnv~p~~~~-~~l~~i~eR----Gl----ig----~~~~wce~f~---ty 500 (595)
.+|||+|||.|.+++.|... |-. +|+-.|-. ..+..+-++ |+ .. ...|..+.+. .-
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNS--YVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTC--EEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCC--EEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 58999999999999888542 110 22333322 334433333 31 11 1112222110 11
Q ss_pred CCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 501 PRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 501 prtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+.+||+|++...+. .++-++-|+|+|||.+++.-
T Consensus 160 ~~~fD~I~~~~~~~---------------~~~~~~~~~LkpgG~lv~~~ 193 (227)
T 2pbf_A 160 LGLFDAIHVGASAS---------------ELPEILVDLLAENGKLIIPI 193 (227)
T ss_dssp HCCEEEEEECSBBS---------------SCCHHHHHHEEEEEEEEEEE
T ss_pred CCCcCEEEECCchH---------------HHHHHHHHhcCCCcEEEEEE
Confidence 26899999766554 25678889999999999863
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0026 Score=60.78 Aligned_cols=97 Identities=10% Similarity=-0.009 Sum_probs=56.5
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccc--hhhh-cccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGVY-HDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~-~~wce~f~typrtyDl~H~~~~~s 514 (595)
.+|||+|||.|.++..+..... -.|+-.|-. ..+..+-+ .|+ +-++ .|..+..+.-+.+||+|=++..|.
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 5799999999999987554432 145555544 44444432 232 1111 122221222236899998765543
Q ss_pred cccCCCCCCCCCChhhhHHhh--cccccCCcEEEEeCCh
Q 007645 515 LIKNPGSNKNSCSLVDLMVEM--DRMLRPEGTVVVRDSP 551 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEm--dRiLRP~G~~i~rd~~ 551 (595)
. -....++-++ -|+|+|||.+++....
T Consensus 134 ~----------~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 134 R----------GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp T----------TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C----------CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 1 1344566666 4579999999997544
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.014 Score=59.38 Aligned_cols=55 Identities=16% Similarity=0.005 Sum_probs=43.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
..+++.+.+... ..+ .+|||++||+|+++..++..|. .+.++|+++.+++.|++|
T Consensus 222 ~~l~~~~i~~~~-~~~--~~vlD~f~GsGt~~~~a~~~g~---~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 222 LELAERLVRMFS-FVG--DVVLDPFAGTGTTLIAAARWGR---RALGVELVPRYAQLAKER 276 (297)
T ss_dssp HHHHHHHHHHHC-CTT--CEEEETTCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCC--CEEEECCCCCCHHHHHHHHcCC---eEEEEeCCHHHHHHHHHH
Confidence 455666666554 333 4899999999999999988864 678899999999999877
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0023 Score=62.32 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=52.2
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh---hhcccCCCCCCCC-C-ccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFSTYP-R-TYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~wce~f~typ-r-tyDl~H~~~~ 512 (595)
.+|||+|||.|.+++.|...-- .+|+-.|-. ..+..+-++ |+-. ...|. ...+| . .||+|.++..
T Consensus 93 ~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii~~~~ 167 (235)
T 1jg1_A 93 MNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG---SKGFPPKAPYDVIIVTAG 167 (235)
T ss_dssp CCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEECSB
T ss_pred CEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc---ccCCCCCCCccEEEECCc
Confidence 5899999999999998865210 123333322 444444332 3211 11222 22334 3 4999997776
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+..+ .-++-|+|+|||.+++.-
T Consensus 168 ~~~~---------------~~~~~~~L~pgG~lvi~~ 189 (235)
T 1jg1_A 168 APKI---------------PEPLIEQLKIGGKLIIPV 189 (235)
T ss_dssp BSSC---------------CHHHHHTEEEEEEEEEEE
T ss_pred HHHH---------------HHHHHHhcCCCcEEEEEE
Confidence 6533 237789999999999864
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0032 Score=60.23 Aligned_cols=121 Identities=16% Similarity=0.129 Sum_probs=63.9
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHH--------hhccchhh--hcccCCCCCCCCCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVI--------YDRGLIGV--YHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i--------~eRGlig~--~~~wce~f~typrtyDl~H~ 509 (595)
..|||+|||.|.++..|... .. +|+-.|-. ..|..+ -.+|+-.+ .+.=.+.++.-..+ |.+..
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~---~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSR---LVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTE---EEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CEEEEecCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence 57999999999999999664 22 34444433 434421 13443221 11111223321244 66651
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC------------------Ch-HHHHHHHHhHhccCceeEE
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD------------------SP-EVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd------------------~~-~~~~~~~~~~~~~~W~~~~ 570 (595)
.-.+.... ..+.-+...+|-||-|+|||||.+++.- .. ...+.+++++..--|++..
T Consensus 105 ~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 105 LMPWGSLL----RGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp ESCCHHHH----HHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEE
T ss_pred Eccchhhh----hhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCcee
Confidence 11111000 0000011578999999999999999952 11 2233466777777776644
Q ss_pred e
Q 007645 571 H 571 (595)
Q Consensus 571 ~ 571 (595)
.
T Consensus 181 ~ 181 (218)
T 3mq2_A 181 C 181 (218)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0055 Score=62.77 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=74.2
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc------cc----hh-hhcccCCCCCC-CCCccchh
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR------GL----IG-VYHDWCEPFST-YPRTYDLI 507 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR------Gl----ig-~~~~wce~f~t-yprtyDl~ 507 (595)
-++|||+|||.|+++..|.+. ++- +|+-+|-. .-+.++-++ ++ +- +..|..+.... -+.+||+|
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~--~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTVE--HCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTCC--EEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 478999999999999999876 332 22323322 333333221 11 00 11111111111 14789999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-----hHHHHHHHHhHhccCce-eEEec--cCCCCCC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-----PEVIDKVSRIANTVRWT-AAVHD--KEPGSNG 579 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-----~~~~~~~~~~~~~~~W~-~~~~~--~~~~~~~ 579 (595)
-++....... ...-.-..++-++-|+|+|||.+++... ......+.+.++..-+. +.... ....+.+
T Consensus 174 i~d~~~~~~~-----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g 248 (304)
T 3bwc_A 174 IIDTTDPAGP-----ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCG 248 (304)
T ss_dssp EEECC--------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTS
T ss_pred EECCCCcccc-----chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCc
Confidence 9864332110 1111125688899999999999999632 23455566655555443 22221 1222334
Q ss_pred CceEEEEEec
Q 007645 580 REKILVATKS 589 (595)
Q Consensus 580 ~~~~l~~~K~ 589 (595)
.-..+++.|.
T Consensus 249 ~w~f~~as~~ 258 (304)
T 3bwc_A 249 SIGTLVCSKK 258 (304)
T ss_dssp CCEEEEEESS
T ss_pred ceEEEEEeCC
Confidence 4567788875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0073 Score=60.02 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=62.6
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc-----c-chh----hhcccCCCCCCC-CCccchhh
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR-----G-LIG----VYHDWCEPFSTY-PRTYDLIH 508 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR-----G-lig----~~~~wce~f~ty-prtyDl~H 508 (595)
.+|||+|||.|.++.+|... |- .+|+-.|-. ..+..+-++ | +.. ...|..+. .+ +.+||+|-
T Consensus 101 ~~vLdiG~G~G~~~~~l~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~~~~~D~v~ 176 (280)
T 1i9g_A 101 ARVLEAGAGSGALTLSLLRAVGPA--GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELPDGSVDRAV 176 (280)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTT--SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCCTTCEEEEE
T ss_pred CEEEEEcccccHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCCCCceeEEE
Confidence 47999999999999988653 21 134444443 455544443 3 211 12233322 13 36899987
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhc-cCce
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANT-VRWT 567 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~-~~W~ 567 (595)
++. -....+|-++-|+|+|||.+++... .+.+.++...+.. ..|.
T Consensus 177 ~~~--------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~ 223 (280)
T 1i9g_A 177 LDM--------------LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT 223 (280)
T ss_dssp EES--------------SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred ECC--------------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence 521 1233689999999999999999643 3344444443333 4443
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0077 Score=59.11 Aligned_cols=94 Identities=11% Similarity=0.141 Sum_probs=53.9
Q ss_pred eeeEEecccchhHHHhhhcCC-C-eEEEEeccCCCC-CchhHHh----hccchh---h-hcccCCCCCCC------CCcc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-P-VWVMNVVPARKS-STLSVIY----DRGLIG---V-YHDWCEPFSTY------PRTY 504 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~-vwvmnv~p~~~~-~~l~~i~----eRGlig---~-~~~wce~f~ty------prty 504 (595)
-++|||+|||.|..+..|... | - -.|+-.|-. ..+.++- +.|+-. + ..|..+.++.. +.+|
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDD--GKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 368999999999998887532 1 1 122223322 3333332 234421 1 11222212222 4789
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|+|-++.-- -....++-++-|+|||||.+++.+
T Consensus 149 D~I~~d~~~------------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 149 DFGFVDADK------------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp EEEEECSCG------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CEEEECCch------------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 999765322 134567888889999999999964
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0037 Score=64.37 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=56.3
Q ss_pred eeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhc----cchh--hh-cccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDR----GLIG--VY-HDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~-~~wce~f~typrtyDl~H~~~~ 512 (595)
..|||+|||.|+++.+|... +- -.|+-.|-. ..+..+-++ |+-. +. +|. +.++.++.+||+|-++-.
T Consensus 120 ~~VLDlg~G~G~~t~~la~~~~~~--~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 120 EIVADMAAAPGGKTSYLAQLMRND--GVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS-LHIGELNVEFDKILLDAP 196 (315)
T ss_dssp CEEEECCSSCSHHHHHHHHHTTTC--SEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG-GGGGGGCCCEEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh-hhcccccccCCEEEEeCC
Confidence 47999999999999888642 10 123344443 445544443 4411 11 121 122224568999987533
Q ss_pred ccc----ccCCCCCCCC--CC-------hhhhHHhhcccccCCcEEEEe
Q 007645 513 ESL----IKNPGSNKNS--CS-------LVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 513 ~s~----~~~~~~~~~~--c~-------~~~~llEmdRiLRP~G~~i~r 548 (595)
.|. -++|...-.. -. -..+|-++-|+|||||.+++.
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~s 245 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYS 245 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 221 0111000000 00 137888999999999999995
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0028 Score=81.93 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=49.4
Q ss_pred cceEEEECCCCcHHHHHHhhc-C---CceEEEEeecCcHHHHHHHHHcC--CCeEEEEccccc-CCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-N---ILTLSFAPRDSHKAQIQFALERG--IPAFVAMLGTRR-LPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-g---v~~~~v~~vD~s~~~l~~A~erg--~~~~~~~~d~~~-LPfpd~sFDlV~~s~v 273 (595)
..+||+||.|+|..+..+++. + ....+++-.|+|....+.|+++. +.+.....|.+. .++..++||+|+++.+
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 448999999999766554432 1 12346777788876665555542 222322233333 2445678999999999
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+ |-..+....|.++.++|||||++++...
T Consensus 1321 l-~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1321 L-ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ---------------------CCEEEEEEC
T ss_pred c-cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 9 5555778899999999999999998754
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.017 Score=54.50 Aligned_cols=115 Identities=9% Similarity=0.077 Sum_probs=70.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
.+|+|+|||.|.|+.+|.....- +|+-.|-. ..+..+-++ |+ . ..-.+..+..+|.+||+|-++-.|....
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~-~-~~~~~~d~~~~~~~~D~v~~~~p~~~~~ 126 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFKG-K-FKVFIGDVSEFNSRVDIVIMNPPFGSQR 126 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGTT-S-EEEEESCGGGCCCCCSEEEECCCCSSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHHHHHcCC-C-EEEEECchHHcCCCCCEEEEcCCCcccc
Confidence 58999999999999998765321 33444433 444433332 32 1 1111222333567999999888776442
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhccCceeEE
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~~W~~~~ 570 (595)
+-....+|-++-|+| ||.+++. ......+.+.+++...-|++..
T Consensus 127 -------~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 127 -------KHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp -------TTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred -------CCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCCCeEEE
Confidence 122345677788888 6655554 3666677788877777776644
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.02 Score=58.53 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=69.9
Q ss_pred eeEEeccc------chhH-HHhhhcC--CCeEEEEeccCCCCCchhHHhhccchh-hhcccCCCCCCCCCccchhhccCc
Q 007645 443 RNIMDMNA------FFGG-FAAALTS--DPVWVMNVVPARKSSTLSVIYDRGLIG-VYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~------~~g~-faa~l~~--~~vwvmnv~p~~~~~~l~~i~eRGlig-~~~~wce~f~typrtyDl~H~~~~ 512 (595)
..|||+|| |.|+ .+|.+.. ..|.-+-+-|. + + ++-= +..|+.+. + ++.+||+|.++..
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-----v----~-~v~~~i~gD~~~~-~-~~~~fD~Vvsn~~ 132 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-----V----S-DADSTLIGDCATV-H-TANKWDLIISDMY 132 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-----B----C-SSSEEEESCGGGC-C-CSSCEEEEEECCC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-----C----C-CCEEEEECccccC-C-ccCcccEEEEcCC
Confidence 46999999 5586 3333443 23444444443 1 1 2211 33454432 1 3478999998643
Q ss_pred ccc--ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCc-eeEEeccCCCCCCCceEEEEEe
Q 007645 513 ESL--IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRW-TAAVHDKEPGSNGREKILVATK 588 (595)
Q Consensus 513 ~s~--~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W-~~~~~~~~~~~~~~~~~l~~~K 588 (595)
... ..........-.++.+|-|+-|+|||||.|++... ..-..++.++++...+ .+...- ......|.+++++.
T Consensus 133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~a--sr~~s~e~~lv~~~ 210 (290)
T 2xyq_A 133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVTN--VNASSSEAFLIGAN 210 (290)
T ss_dssp CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEEG--GGTTSSCEEEEEEE
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEEE--cCCCchheEEecCC
Confidence 211 00000011112234788999999999999998431 1112466666666634 444441 22223677887765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 595 | ||||
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-05 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 5e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.001 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 0.003 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.004 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.004 |
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 4/129 (3%)
Query: 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244
+++++ + R LD+ CG + + + + +
Sbjct: 28 DFVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 245 GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF--TAYNATYLIEVDRLLRPGGYLVISG 302
+ G FD V I + +V L+PGG +
Sbjct: 86 RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
Query: 303 PPVQWPKQD 311
P + +D
Sbjct: 146 PCWFYGGRD 154
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 5e-04
Identities = 20/139 (14%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE----------NILTLSFAPRDS 233
DK + + I T ++ L +G G +LS+ N + +
Sbjct: 25 DKKLPGIIGRIGDTKSEIKI-LSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 83
Query: 234 HKAQIQFALERGIPAFVAMLGT---------RRLPFPAFSFDIVHCSRCLIPFTAYNATY 284
K + A + +D +H + L AT
Sbjct: 84 AKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATL 143
Query: 285 LIEVDRLLRPGGYLVISGP 303
LL ++I
Sbjct: 144 K-FFHSLLGTNAKMLIIVV 161
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.8 bits (89), Expect = 0.001
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 18/134 (13%)
Query: 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE--NILTLSFAPRDSHKAQIQFA 241
+Y L + G LD+ CG ++ E ++ ++ + + A +
Sbjct: 42 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERW 99
Query: 242 LERGIPAFV--------AMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNAT------YLIE 287
R PAF + + +P ++ L
Sbjct: 100 NRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKN 159
Query: 288 VDRLLRPGGYLVIS 301
+ ++RPGG LVI
Sbjct: 160 IASMVRPGGLLVID 173
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.3 bits (85), Expect = 0.003
Identities = 20/155 (12%), Positives = 40/155 (25%), Gaps = 19/155 (12%)
Query: 150 YNKIADRKGHQGWMKESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGC 209
YNK A + ++ Y K+ D + + LD+ C
Sbjct: 3 YNKFAHI--YDKLIRADVDY--------------KKWSDFIIEKCVENNLVFDDYLDLAC 46
Query: 210 GVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVH 269
G + ++ + T + ++ + FD++
Sbjct: 47 GTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLIT 106
Query: 270 CSRCLI---PFTAYNATYLIEVDRLLRPGGYLVIS 301
C + Y V L+ GG +
Sbjct: 107 CCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 26/188 (13%), Positives = 46/188 (24%), Gaps = 44/188 (23%)
Query: 169 YFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSF 228
Y++F G + A+ ++ L + G T +D+G G + +L+
Sbjct: 20 YYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIY--QVLAACDSFQDI 77
Query: 229 APRDSHKAQIQFALERG-----------IPAFVAML------------------------ 253
D + + F L
Sbjct: 78 TLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKC 137
Query: 254 ----GTRRLPFPAFSFDIVHCSRCL---IPFTAYNATYLIEVDRLLRPGGYLVISGPPVQ 306
G P D V + L + LL+PGG+LV +
Sbjct: 138 DVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197
Query: 307 WPKQDKEW 314
+
Sbjct: 198 PSYMVGKR 205
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.004
Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 12/136 (8%)
Query: 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQI 238
+ D + +L++ + + LD+GCG + + ++ + ++ D K I
Sbjct: 66 YQPLRDAIVAQLRERLDDKATAV---LDIGCGEGYYTHAF-ADALPEITTFGLDVSKVAI 121
Query: 239 QFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYL 298
+ A +R + + RLPF S D + E+ R+++PGG++
Sbjct: 122 KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC--------KAEELARVVKPGGWV 173
Query: 299 VISGPPVQWPKQDKEW 314
+ + P + + K
Sbjct: 174 ITATPGPRHLMELKGL 189
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 595 | |||
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.73 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.72 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.69 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.69 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.65 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.62 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.6 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.59 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.59 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.58 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.55 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.53 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.5 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.49 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.46 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.44 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.42 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.42 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.4 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.38 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.37 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.33 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.31 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.3 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.27 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.27 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.25 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.25 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.24 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.23 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.18 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.15 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.14 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.12 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.1 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.1 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.09 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.07 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.02 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.99 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.93 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.92 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.82 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.79 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.73 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.72 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.7 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.69 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.49 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.48 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.46 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.43 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.39 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.37 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.36 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.25 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.25 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.24 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.23 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.23 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 98.21 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.16 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.15 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 98.15 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.11 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 98.08 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.08 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.08 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.06 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.04 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.0 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 97.97 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.95 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.93 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.92 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.9 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.9 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 97.89 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.88 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 97.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 97.86 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 97.83 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 97.81 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 97.8 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 97.8 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 97.78 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 97.76 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 97.76 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 97.74 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.71 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 97.67 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 97.67 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.65 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.64 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 97.63 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 97.57 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.56 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.48 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.48 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.43 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 97.43 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.43 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.41 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 97.38 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.35 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.35 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 97.31 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.23 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.11 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.11 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 97.08 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.08 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 97.07 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 97.07 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 97.07 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 96.95 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 96.94 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 96.91 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 96.89 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.88 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 96.8 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 96.79 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 96.74 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.6 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.49 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 96.33 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.31 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 96.27 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.21 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.17 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 95.98 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.63 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.6 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 95.29 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.2 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.72 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 94.63 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 94.56 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.27 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 94.2 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.15 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.02 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 93.87 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 93.67 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 93.3 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 92.86 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.78 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 92.27 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 92.19 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.05 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.69 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.65 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 91.48 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 91.42 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 91.37 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.13 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 90.9 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.59 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 90.02 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.88 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 89.79 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 89.65 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 89.08 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 89.05 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 88.67 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.87 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.73 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 87.14 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 86.66 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 86.65 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 86.42 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 86.16 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 85.2 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 84.36 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.3 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 83.64 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.34 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 83.18 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 82.4 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 82.34 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 82.21 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 82.16 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 81.86 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 81.27 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 81.2 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 81.11 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 81.01 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 80.46 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.36 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 80.27 |
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.73 E-value=1.2e-17 Score=161.47 Aligned_cols=110 Identities=22% Similarity=0.306 Sum_probs=95.0
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEcccccCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~LPfpd 262 (595)
.++.+.++..++. +|||||||+|.++..|++++. +++++|+|+.|++.|+++ + .++.+.+++.+.+|+++
T Consensus 5 ~~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~ 79 (231)
T d1vl5a_ 5 AKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 79 (231)
T ss_dssp HHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccccccccc
Confidence 4566667777655 999999999999999998864 688999999999998765 3 45789999999999999
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|..+++|+. ++..+|.++.|+|||||++++.++
T Consensus 80 ~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 80 ERFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp TCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccccccC-CHHHHHHHHHHhcCCCcEEEEEeC
Confidence 9999999999997775 899999999999999999999764
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=2e-17 Score=161.46 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=99.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP 259 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP 259 (595)
++.+.+.+.++.+++. +|||||||+|.++..|++++. +++++|+|+.|++.|+++ +. ++.+.++|++.+|
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~ 77 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhccccccccccccccccccc
Confidence 4456677888888876 999999999999999999853 788999999999998765 43 5889999999999
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+++++||+|+|..+++|+. ++..+++++.|+|||||++++++.
T Consensus 78 ~~~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~~ 120 (234)
T d1xxla_ 78 FPDDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 120 (234)
T ss_dssp SCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccceeeeeceeeccc-CHHHHHHHHHHeeCCCcEEEEEEc
Confidence 9999999999999997765 899999999999999999999763
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.69 E-value=1.4e-16 Score=159.95 Aligned_cols=112 Identities=18% Similarity=0.231 Sum_probs=95.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
++.+....+..++. +|||||||+|.++..|+++. ...++++|+|+.+++.|+++ ++ ++.+..+++.++|+
T Consensus 56 ~~~l~~~~~l~~~~--~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 56 ASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 34444444555555 99999999999999998862 24788999999999998876 44 58899999999999
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++||+|+|..+++|+. ++..++.++.|+|||||+|++.++
T Consensus 132 ~~~sfD~V~~~~~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp CTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhccchhhhcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999999999999986 889999999999999999999875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.69 E-value=6.6e-17 Score=154.80 Aligned_cols=99 Identities=23% Similarity=0.299 Sum_probs=88.2
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
.+|||||||+|.++..|++.+. .++++|+|+.|++.|+++ +....+...|+..+|+++++||+|+|..+++|+
T Consensus 39 ~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhhC
Confidence 4899999999999999998864 789999999999998865 567788889999999999999999999999887
Q ss_pred c-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 278 T-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 278 ~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
. .+...+|+++.|+|||||++++..+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 5 3566899999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.65 E-value=2.2e-16 Score=153.09 Aligned_cols=98 Identities=23% Similarity=0.349 Sum_probs=86.0
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcC-CCccccc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLIPFTA 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~-vL~h~~~ 279 (595)
..+|||+|||+|.++..|++.+. .++++|+|+.|++.|++++... +..++++++|+++++||+|+|.. +++|+ .
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~-~~~~~~~~l~~~~~~fD~ii~~~~~~~~~-~ 117 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKN-VVEAKAEDLPFPSGAFEAVLALGDVLSYV-E 117 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSC-EEECCTTSCCSCTTCEEEEEECSSHHHHC-S
T ss_pred CCEEEEECCCCchhcccccccce---EEEEeecccccccccccccccc-cccccccccccccccccceeeecchhhhh-h
Confidence 34899999999999999998864 7899999999999999998654 56788999999999999999865 66565 5
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++..+|+++.|+|||||+++++.+
T Consensus 118 d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHHHHHHHHHhhcCcCcEEEEEEC
Confidence 889999999999999999999875
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=6.5e-16 Score=151.68 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=98.7
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
....++.+.+.+...+|+ +|||||||+|.++..|+++. ...++++|+|+.|++.|+++ |+ .+.+...|..
T Consensus 18 ~~~~~~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 18 TEEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 93 (245)
T ss_dssp CHHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred CHHHHHHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHh
Confidence 345677788888888876 99999999999999998762 24788999999999988876 54 3789999988
Q ss_pred cCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 257 RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 257 ~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+ +++++||+|+|..+++|+. +...++.++.|+|||||++++..+
T Consensus 94 ~~-~~~~~fD~v~~~~~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 94 GY-VANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TC-CCSSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hc-cccCceeEEEEEehhhccC-CHHHHHHHHHHHcCcCcEEEEEec
Confidence 87 4689999999999998886 789999999999999999999865
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=1.7e-15 Score=144.34 Aligned_cols=119 Identities=21% Similarity=0.248 Sum_probs=97.8
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccCHH
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNA 282 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~ 282 (595)
+|||||||+|.++..+.+ ++++|+|+.+++.|++++ +.+.+.+++.+|+++++||+|+|..+|+|+. ++.
T Consensus 39 ~vLDiGcG~G~~~~~~~~-------~~giD~s~~~~~~a~~~~--~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~~ 108 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI-------KIGVEPSERMAEIARKRG--VFVLKGTAENLPLKDESFDFALMVTTICFVD-DPE 108 (208)
T ss_dssp CEEEETCTTSTTHHHHTC-------CEEEESCHHHHHHHHHTT--CEEEECBTTBCCSCTTCEEEEEEESCGGGSS-CHH
T ss_pred eEEEECCCCcccccccce-------EEEEeCChhhcccccccc--ccccccccccccccccccccccccccccccc-ccc
Confidence 799999999999988853 257899999999999985 5788899999999999999999999998886 899
Q ss_pred HHHHHHHhhcCCCcEEEEEcCCCCCCC--------------C---chhHHHHHHHHHHcCcEEEEe
Q 007645 283 TYLIEVDRLLRPGGYLVISGPPVQWPK--------------Q---DKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 283 ~~L~Ei~RvLRPGG~lvls~p~~~~~~--------------~---~~~w~~l~~la~~~~w~~v~~ 331 (595)
.+|.++.|+|||||.+++.++...... . ...-..+.+++++.||+.+..
T Consensus 109 ~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 109 RALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred cchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 999999999999999999987432100 0 001245888999999987643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.60 E-value=4.1e-15 Score=144.33 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=106.3
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCCCCCCceeEEEEcCCCcccccCH
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYN 281 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~ 281 (595)
+|||||||+|.++..|++++. .++++|+|+++++.|+++.. ++.+..++.+.+++ +++||+|+|..+|+|+. ++
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~---~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~-d~ 97 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID-DP 97 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-SH
T ss_pred cEEEEeCCCcHHHHHHHHcCC---eEEEEeCcHHHhhhhhccccccccccccccccccc-ccccccccccceeEecC-CH
Confidence 799999999999999998864 68899999999999998844 47788888888776 58999999999998885 88
Q ss_pred HHHHHHHH-hhcCCCcEEEEEcCCCCCCC--------------------------CchhHHHHHHHHHHcCcEEEEeecc
Q 007645 282 ATYLIEVD-RLLRPGGYLVISGPPVQWPK--------------------------QDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 282 ~~~L~Ei~-RvLRPGG~lvls~p~~~~~~--------------------------~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
..+|.++. |+|||||.+++..|...... +...++.+++++++.+++++..++
T Consensus 98 ~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~~- 176 (225)
T d2p7ia1 98 VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSG- 176 (225)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE-
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEEE-
Confidence 99999997 89999999999987432110 011256799999999999876542
Q ss_pred eeEeeccCC
Q 007645 335 TVIWKKPVG 343 (595)
Q Consensus 335 ~~iw~K~~~ 343 (595)
+.-||..
T Consensus 177 --~~~kp~~ 183 (225)
T d2p7ia1 177 --IFFKALA 183 (225)
T ss_dssp --EEECCSC
T ss_pred --EEecccc
Confidence 3345554
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.59 E-value=2e-15 Score=149.99 Aligned_cols=141 Identities=14% Similarity=0.186 Sum_probs=108.0
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC---CeEEEEcccccCCCCCCc
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI---PAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~---~~~~~~~d~~~LPfpd~s 264 (595)
..+.+.++... ..+|||+|||+|.++..|+..+.. .+.++|+++.|++.|+++.. .+.+.+.+++.+++++++
T Consensus 83 ~~fl~~l~~~~--~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (254)
T d1xtpa_ 83 RNFIASLPGHG--TSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHTSTTCC--CSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSC
T ss_pred HHHHhhCCCCC--CCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCc
Confidence 34444554443 348999999999999998876443 67889999999999998732 367888999999999999
Q ss_pred eeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCC-----CCCc----hhHHHHHHHHHHcCcEEEEee
Q 007645 265 FDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQW-----PKQD----KEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 265 FDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~-----~~~~----~~w~~l~~la~~~~w~~v~~~ 332 (595)
||+|+|..+++|+.+ +...+|+++.++|||||++++.++.... ...+ .....+++++++.+|+++..+
T Consensus 159 fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred cceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 999999999999873 2358899999999999999997752211 0011 124568889999999888654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2e-15 Score=146.13 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=104.5
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-----CeEEEEcccccCCCCCCceeEEEEcCCCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-----PAFVAMLGTRRLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-----~~~~~~~d~~~LPfpd~sFDlV~~s~vL~ 275 (595)
..+|||||||+|.++..|+..+. ..++++|+|+.|++.|+++.. +..+.+++++.+++++++||+|+|..+++
T Consensus 61 ~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 61 TSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence 45899999999999999887654 378899999999999998732 35889999999999999999999999999
Q ss_pred cccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCCC----Cc----hhHHHHHHHHHHcCcEEEEeec
Q 007645 276 PFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWPK----QD----KEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 276 h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~----~~----~~w~~l~~la~~~~w~~v~~~~ 333 (595)
|+.+ +...++.++.++|||||.++++++...... .+ ...+.+.+++++.+|+++..+.
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 9863 234799999999999999999865211110 00 1255688999999999886643
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.6e-15 Score=150.16 Aligned_cols=110 Identities=22% Similarity=0.357 Sum_probs=92.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~ 263 (595)
+..+..+.+.++.. ..+|||||||+|.++..|+++.. ...++++|+|+.+++.|+++..++.+.++|+.++|++++
T Consensus 71 ~~~~~~l~~~~~~~---~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~ 146 (268)
T d1p91a_ 71 DAIVAQLRERLDDK---ATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDT 146 (268)
T ss_dssp HHHHHHHHHHSCTT---CCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTT
T ss_pred HHHHHHHHHhcCCC---CCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccccccceeeehhhccCCCC
Confidence 33444444444433 45899999999999999998843 357889999999999999999899999999999999999
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
+||+|++.++++| +.|+.|+|||||+|++++|..
T Consensus 147 sfD~v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 147 SMDAIIRIYAPCK--------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp CEEEEEEESCCCC--------HHHHHHHEEEEEEEEEEEECT
T ss_pred CEEEEeecCCHHH--------HHHHHHHhCCCcEEEEEeeCC
Confidence 9999999887754 578999999999999999743
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=8.8e-15 Score=142.79 Aligned_cols=99 Identities=19% Similarity=0.286 Sum_probs=84.9
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcC-CCc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSR-CLI 275 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~-vL~ 275 (595)
..+|||||||+|.++..|++++. +++++|+|++|++.|+++ +.++.+.++++++++++ ++||+|+|.. ++.
T Consensus 42 ~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~ 117 (251)
T d1wzna1 42 VRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117 (251)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCEEEEEECSSGGG
T ss_pred CCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhhhhcccc-cccchHhhhhhhhh
Confidence 34899999999999999999865 688999999999999876 66789999999999987 5899999975 555
Q ss_pred ccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|+. ++...+|+++.++|||||+|++..+
T Consensus 118 ~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 118 YFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 543 3456899999999999999999765
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.55 E-value=1e-14 Score=146.70 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=95.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLP 259 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LP 259 (595)
+.|++.+.+.+... .+..+|||||||+|.++..|++.......++++|+|+.+++.|+++ +.++.+.+.|+..++
T Consensus 12 ~d~l~~l~~~~~~~-~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~ 90 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE 90 (281)
T ss_dssp HHHHHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC
T ss_pred HHHHHHHHHHHhcc-CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc
Confidence 45666665544221 2345899999999999999988633345789999999999999876 456788899999998
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++ ++||+|+|..+++|+. ++..+|+++.|+|||||.+++.+|
T Consensus 91 ~~-~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 91 LN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cc-CCceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 86 5799999999998876 889999999999999999999887
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=1.6e-14 Score=141.46 Aligned_cols=111 Identities=16% Similarity=0.224 Sum_probs=88.9
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAF 263 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~ 263 (595)
+.+.+.+.......++|||+|||+|.++..|++++. .++++|+|++|++.|+++ +.++.+.++|+..++++ +
T Consensus 25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~-~ 100 (246)
T d1y8ca_ 25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-R 100 (246)
T ss_dssp HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-C
T ss_pred HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhhhccc-c
Confidence 334444443333345899999999999999999875 678999999999998875 67899999999888864 6
Q ss_pred ceeEEEEc-CCCcccc--cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 264 SFDIVHCS-RCLIPFT--AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 264 sFDlV~~s-~vL~h~~--~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+||+|+|. .++.|+. ++...+|+++.+.|||||.|++..
T Consensus 101 ~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 89999986 4565654 345689999999999999999864
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.53 E-value=2.4e-14 Score=138.53 Aligned_cols=102 Identities=17% Similarity=0.133 Sum_probs=82.2
Q ss_pred cceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|..+..|++. ......++++|+|+.|++.|+++ +. ...+...+.. +++...+|+|+|+.+
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~--~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR--HVEIKNASMVILNFT 117 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT--TCCCCSEEEEEEESC
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhh--ccccccceeeEEeee
Confidence 348999999999999999875 23456899999999999999876 23 3444554444 455578999999999
Q ss_pred Ccccc-cCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 274 LIPFT-AYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 274 L~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
++|+. ++...+|+++.|+|||||.|++.++.
T Consensus 118 l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 97765 46779999999999999999998753
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.50 E-value=1.7e-14 Score=134.34 Aligned_cols=112 Identities=9% Similarity=0.016 Sum_probs=88.0
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-----------------CCCeE
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER-----------------GIPAF 249 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er-----------------g~~~~ 249 (595)
+++....+...++. +|||+|||+|..+.+|+++|. +++++|+|+.|++.|+++ +....
T Consensus 9 ~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~---~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T d1pjza_ 9 LQQYWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGY---HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIE 83 (201)
T ss_dssp HHHHHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCC---EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSE
T ss_pred HHHHHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCC---ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccc
Confidence 33344445555555 999999999999999999875 788999999999999986 22345
Q ss_pred EEEcccccCC-CCCCceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 250 VAMLGTRRLP-FPAFSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 250 ~~~~d~~~LP-fpd~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...+...++ ....+||+|++..+++++.. +...+++++.++|||||++++...
T Consensus 84 ~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 84 IWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp EEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred eecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 6667766665 34578999999999988763 346899999999999999888653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.49 E-value=8.3e-14 Score=132.20 Aligned_cols=97 Identities=19% Similarity=0.335 Sum_probs=83.0
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
+|||||||+|..+..|++++. .++++|+|+.+++.|+++ +++ +.+...|...+++ +++||+|+|..+++|+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFL 108 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGS
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeeeecC
Confidence 799999999999999999975 678899999999987654 444 6778888888875 6899999999999888
Q ss_pred cc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 278 TA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 278 ~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+. +...++.++.++|+|||++++...
T Consensus 109 ~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 109 EAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 63 345899999999999999999753
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=8.7e-14 Score=137.09 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=84.7
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCC-CCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPF-PAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPf-pd~sFDlV~~s~v 273 (595)
..+|||+|||+|..+..+++.+.. .++|+|+|+.|++.|+++ + .++.+.++|+...++ .+++||+|+|..+
T Consensus 25 ~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 25 GDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred cCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence 348999999999999999887653 688999999999999876 2 247788888877765 4678999999999
Q ss_pred CcccccC---HHHHHHHHHhhcCCCcEEEEEcC
Q 007645 274 LIPFTAY---NATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d---~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++|...+ ...++.++.|+|||||+|+++.|
T Consensus 103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9887533 34789999999999999999875
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.46 E-value=6.1e-13 Score=126.16 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=87.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRLP 259 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~LP 259 (595)
.+.+.+.+....+. +|||+|||+|.++..+++.+. +++++|+|+.+++.|+++ ++ .+.+...|... +
T Consensus 41 t~lLi~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~ 114 (194)
T d1dusa_ 41 TKILVENVVVDKDD--DILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-N 114 (194)
T ss_dssp HHHHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-T
T ss_pred HHHHHHhCCcCCCC--eEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-h
Confidence 34566677665544 999999999999999998754 678899999999999864 32 46777777765 6
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+++++||+|+|+.++++..+....++.++.++|+|||.+++..
T Consensus 115 ~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 115 VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 6789999999998886554334688999999999999998865
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=1.5e-13 Score=139.21 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=92.2
Q ss_pred ccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEE
Q 007645 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAM 252 (595)
Q Consensus 179 F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~ 252 (595)
.......-++.+.+.+...+|. +|||||||.|+++.+++++ ....++++++|+++++.|+++ ++. +.+..
T Consensus 42 L~~Aq~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~--~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~ 117 (291)
T d1kpia_ 42 LEEAQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAE--YDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 117 (291)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHh--cCcceeeccchHHHHHHHHHHHHhhccchhhhhhh
Confidence 3333344577888888888776 9999999999999999876 234788999999999888765 543 34444
Q ss_pred cccccCCCCCCceeEEEEcCCCccccc--------CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 253 LGTRRLPFPAFSFDIVHCSRCLIPFTA--------YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 253 ~d~~~LPfpd~sFDlV~~s~vL~h~~~--------d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.| .++++++||.|+|..+++|+.+ +...+++++.|+|||||++++.+
T Consensus 118 ~d---~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 118 QG---WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp CC---GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hc---ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 33 3566789999999999999873 24689999999999999999865
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2.7e-13 Score=136.61 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=90.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~ 257 (595)
..-++.+.+.+...+|. +|||||||+|.++.+++++. ...++++|+|+++++.|+++ +++ +.+...+...
T Consensus 38 ~~k~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~ 113 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED 113 (280)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred HHHHHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence 34467788888777766 99999999999999998771 24789999999999998876 443 4445445444
Q ss_pred CCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 LPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+ +++||.|++..+++|+. .+...+++++.|+|||||.+++.+
T Consensus 114 ~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 114 F---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp C---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred h---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 3 47899999999999987 345789999999999999999965
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.5e-13 Score=130.12 Aligned_cols=115 Identities=14% Similarity=0.032 Sum_probs=91.9
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------------------
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------------------ 245 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------------------ 245 (595)
..+++.+.+.+....+. +|||+|||+|..+.+|+++|. +++++|+|+.+++.|+++.
T Consensus 31 ~~l~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (229)
T d2bzga1 31 QLLKKHLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVF 105 (229)
T ss_dssp HHHHHHHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhccccccee
Confidence 34445555555554444 899999999999999999976 6789999999999988752
Q ss_pred ----CCeEEEEcccccCC-CCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 246 ----IPAFVAMLGTRRLP-FPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 246 ----~~~~~~~~d~~~LP-fpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+.+.+.|...++ ...+.||+|+...+++|+. ++...++.++.++|||||++++...
T Consensus 106 ~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 106 KSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 24667777776664 6678999999999999887 3456899999999999999888764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.42 E-value=2.1e-13 Score=135.61 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=99.4
Q ss_pred CCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEE
Q 007645 176 GTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVA 251 (595)
Q Consensus 176 g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~ 251 (595)
+..|+.|...-.+.+.+.+.....+..+|||+|||+|.++..+++.+. .++++|+++.+++.|+++ +++..+.
T Consensus 96 g~aFGTG~H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~ 172 (254)
T d2nxca1 96 GMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254)
T ss_dssp C-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred ccccCccccchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence 334544444444444444433223345999999999999999988764 578999999999988864 7788888
Q ss_pred EcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 252 MLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 252 ~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+.+... .+++++||+|+++...+ ....++.++.|+|||||++++++.. ...-..+.+.+++.+|+.+..
T Consensus 173 ~~d~~~-~~~~~~fD~V~ani~~~----~l~~l~~~~~~~LkpGG~lilSgil------~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 173 EGSLEA-ALPFGPFDLLVANLYAE----LHAALAPRYREALVPGGRALLTGIL------KDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp ESCHHH-HGGGCCEEEEEEECCHH----HHHHHHHHHHHHEEEEEEEEEEEEE------GGGHHHHHHHHHHTTCEEEEE
T ss_pred eccccc-cccccccchhhhccccc----cHHHHHHHHHHhcCCCcEEEEEecc------hhhHHHHHHHHHHCCCEEEEE
Confidence 877654 35678999999975442 3457889999999999999998641 111345777888889987654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=5.3e-13 Score=134.85 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred ccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEE
Q 007645 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAM 252 (595)
Q Consensus 179 F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~ 252 (595)
........++.+.+.+...+|. +|||||||.|.++.++++. ..+.++++++|+.|++.|+++ +. .+.+..
T Consensus 43 L~eAQ~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~--~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~ 118 (285)
T d1kpga_ 43 LQEAQIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEK--YDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL 118 (285)
T ss_dssp HHHHHHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHH--HCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhc--CCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 3344455578888888887776 9999999999999998887 345899999999999998876 32 466777
Q ss_pred cccccCCCCCCceeEEEEcCCCcccc-cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 253 LGTRRLPFPAFSFDIVHCSRCLIPFT-AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 253 ~d~~~LPfpd~sFDlV~~s~vL~h~~-~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.|...++ ++||.|++..+++|+. .+...+++++.|+|||||.+++.+
T Consensus 119 ~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~ 166 (285)
T d1kpga_ 119 AGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT 166 (285)
T ss_dssp SCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence 7776664 6899999999999986 355789999999999999999855
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.4e-13 Score=134.48 Aligned_cols=142 Identities=15% Similarity=0.035 Sum_probs=100.5
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCe---------------
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPA--------------- 248 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~--------------- 248 (595)
+.+.+.+.....+..+|||||||+|.++..++..+ ...++++|+|+.+++.|+++. ...
T Consensus 39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (257)
T d2a14a1 39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGN 116 (257)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTC
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccc
Confidence 34445444444446689999999999988777664 347999999999999998651 100
Q ss_pred ----------------EEEEc----ccccCCCCCCceeEEEEcCCCccccc---CHHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 249 ----------------FVAML----GTRRLPFPAFSFDIVHCSRCLIPFTA---YNATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 249 ----------------~~~~~----d~~~LPfpd~sFDlV~~s~vL~h~~~---d~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
..... +....++++++||+|++.++++|... +...+++++.|+|||||+|++.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 117 SGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp GGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 01111 12234678899999999999988863 44588999999999999999987632
Q ss_pred CCCC---------CchhHHHHHHHHHHcCcEEEEe
Q 007645 306 QWPK---------QDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 306 ~~~~---------~~~~w~~l~~la~~~~w~~v~~ 331 (595)
.... .....+.+++++++.||+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 197 LPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp CCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cccceeccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 2110 0112567889999999987654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.38 E-value=2.7e-12 Score=120.87 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=101.0
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d 254 (595)
....+....+...+....+. +|||+|||+|.++..++..+. .++++|.++.+++.|+++ ++ ++.+.+++
T Consensus 16 ~t~~eir~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gd 90 (186)
T d1l3ia_ 16 PTAMEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90 (186)
T ss_dssp CCCHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESC
T ss_pred CChHHHHHHHHHhcCCCCCC--EEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECc
Confidence 34455666677777766655 999999999999999987743 678999999999999876 44 67888898
Q ss_pred cccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 255 TRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 255 ~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
+...+++...||+|++..... +...++.++.+.|||||++++.... ...-..+.+.++..+|..
T Consensus 91 a~~~~~~~~~~D~v~~~~~~~----~~~~~~~~~~~~LkpgG~lvi~~~~------~e~~~~~~~~l~~~~~~~ 154 (186)
T d1l3ia_ 91 APEALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAIL------LETKFEAMECLRDLGFDV 154 (186)
T ss_dssp HHHHHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEECB------HHHHHHHHHHHHHTTCCC
T ss_pred hhhcccccCCcCEEEEeCccc----cchHHHHHHHHHhCcCCEEEEEeec------cccHHHHHHHHHHcCCCe
Confidence 888777888999999987653 4567899999999999999987531 111223445566666643
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-12 Score=130.61 Aligned_cols=101 Identities=15% Similarity=0.032 Sum_probs=78.7
Q ss_pred ceEEEECCCCcHHHHHHhhc-----CCceEEEEeecCcHHHHHHHHHcC-----C-CeE--EEEcccc------cCCCCC
Q 007645 202 RTALDMGCGVASFGGSMLSE-----NILTLSFAPRDSHKAQIQFALERG-----I-PAF--VAMLGTR------RLPFPA 262 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~-----gv~~~~v~~vD~s~~~l~~A~erg-----~-~~~--~~~~d~~------~LPfpd 262 (595)
.+|||||||+|.++..|++. ......++++|+|+.|++.|+++. . .+. +...+.+ ..++++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 37999999999998877654 223457889999999999998761 1 122 3333222 235678
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|+|.++++|+. ++..+|+++.++|+|||++++..+
T Consensus 122 ~~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 9999999999997775 889999999999999999999875
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=7e-13 Score=133.23 Aligned_cols=113 Identities=22% Similarity=0.342 Sum_probs=83.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-----eEEEEcc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-----AFVAMLG 254 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-----~~~~~~d 254 (595)
..+.+.+.+.+....+. +|||+|||+|.++..|+++|. .++++|+|+.|++.|+++ +.. ..+..++
T Consensus 42 ~~~~~~l~~~l~~~~~~--~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~ 116 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGCH--RVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEAN 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCC--EEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECC
T ss_pred HHHHHHHHHHhhhcCCC--EEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeecc
Confidence 34455556666555444 899999999999999999875 688999999999999765 222 2333433
Q ss_pred cc----cCCCCCCceeEEEEcC-CCccccc------CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 255 TR----RLPFPAFSFDIVHCSR-CLIPFTA------YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 255 ~~----~LPfpd~sFDlV~~s~-vL~h~~~------d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.. .+| +.++||+|+|.. ++.|+.. +...+|+++.|+|||||+|++..
T Consensus 117 ~~~~~~~~~-~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 117 WLTLDKDVP-AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp GGGHHHHSC-CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccC-CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 32 233 346899999864 7777752 34579999999999999999965
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.31 E-value=7.5e-12 Score=123.33 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=95.1
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCC
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFP 261 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfp 261 (595)
+.+.+.++... .++|||||||+|.++..|+++.. ...++.+|+ +.+++.++++ +. .+.+...|... +.+
T Consensus 70 ~~~~~~~d~~~--~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~-~~~ 144 (253)
T d1tw3a2 70 DAPAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLP 144 (253)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS
T ss_pred HHHHhhcCCcc--CCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchh-hcc
Confidence 34445554433 45999999999999999998843 346677887 4567766654 33 47788877643 223
Q ss_pred CCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCch-------------------hHHHHHHHH
Q 007645 262 AFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISGPPVQWPKQDK-------------------EWADLQAVA 321 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~-------------------~w~~l~~la 321 (595)
.+||+|+++.+|+||.+. ...+|+++.|+|||||++++.+....-..... .-+++.+++
T Consensus 145 -~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll 223 (253)
T d1tw3a2 145 -RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLA 223 (253)
T ss_dssp -SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred -cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHH
Confidence 579999999999998732 24789999999999999999865221111100 123456788
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
++.||+.+..
T Consensus 224 ~~AGf~~~~v 233 (253)
T d1tw3a2 224 ASAGLVVEEV 233 (253)
T ss_dssp HHTTEEEEEE
T ss_pred HHCCCeEEEE
Confidence 8888887643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.8e-12 Score=126.05 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=84.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC----CCeEEEEcccc--c
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG----IPAFVAMLGTR--R 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg----~~~~~~~~d~~--~ 257 (595)
..+.+.+.+.+.. . ..+|||||||+|.++..+++++ ..+++++|+|+.+++.|+++. ..+.+...+.. .
T Consensus 40 ~~~~~~la~~~~~-~--g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 114 (229)
T d1zx0a1 40 TPYMHALAAAASS-K--GGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVA 114 (229)
T ss_dssp HHHHHHHHHHHTT-T--CEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcc-C--CCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccc
Confidence 4555666555543 2 3489999999999999999874 347899999999999998873 33455555433 3
Q ss_pred CCCCCCceeEEEE-----cCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 LPFPAFSFDIVHC-----SRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 LPfpd~sFDlV~~-----s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.++++++||.|+. ...+.|+. +...+++++.|+|||||+|++..
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccccccccceeeccccccccccccc-CHHHHHHHHHHHcCCCcEEEEEe
Confidence 3677899999884 55555654 67889999999999999998843
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=8.1e-12 Score=124.64 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=98.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--------CCCeEEEEcccccC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--------GIPAFVAMLGTRRL 258 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--------g~~~~~~~~d~~~L 258 (595)
+..|...+...+|. +|||+|||+|+++..|+..-.....+.++|+++.+++.|+++ ..+..+.+.|....
T Consensus 85 ~s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 85 AAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 44566677777766 999999999999999998722234788899999999999874 13578888898888
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
++++++||.|++ +++ ++..++.++.|+|||||.+++..|.. ++....++.+.++.+|..
T Consensus 163 ~~~~~~fDaV~l-----dlp-~P~~~l~~~~~~LkpGG~lv~~~P~i-----~Qv~~~~~~l~~~~~f~~ 221 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DML-APWEVLDAVSRLLVAGGVLMVYVATV-----TQLSRIVEALRAKQCWTE 221 (264)
T ss_dssp CCCTTCEEEEEE-----ESS-CGGGGHHHHHHHEEEEEEEEEEESSH-----HHHHHHHHHHHHHSSBCC
T ss_pred cccCCCcceEEE-----ecC-CHHHHHHHHHhccCCCCEEEEEeCcc-----ChHHHHHHHHHHcCCeec
Confidence 999999999985 444 67789999999999999999988722 222333444444556654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.27 E-value=1.1e-11 Score=121.39 Aligned_cols=135 Identities=9% Similarity=0.073 Sum_probs=96.8
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccC-CCCCCceeEE
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRL-PFPAFSFDIV 268 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~L-Pfpd~sFDlV 268 (595)
.++..+|. +|||+|||+|.++..|++.. ....+.++|+|+.|++.++++ ..+...+..+.... ++.+..+|++
T Consensus 69 ~l~ikpG~--~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~ 145 (230)
T d1g8sa_ 69 VMPIKRDS--KILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCCTTC--EEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred hCCCCCCC--EEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeE
Confidence 34455555 99999999999999999874 334889999999999998876 23455555554433 4566778877
Q ss_pred EEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCC--CCCC-CchhHHHHHHHHHHcCcEEEEe
Q 007645 269 HCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPV--QWPK-QDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 269 ~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~--~~~~-~~~~w~~l~~la~~~~w~~v~~ 331 (595)
++...+++. ++...++.++.++|||||+++++.... .... .....++..+.+++.+|+.+..
T Consensus 146 ~i~~~~~~~-~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 146 VIYEDVAQP-NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp EEEECCCST-THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred Eeeccccch-HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 776666544 467889999999999999999975421 1111 1122555667778889988755
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.25 E-value=2e-11 Score=117.26 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=92.1
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCceeEEEEcCCCc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~ 275 (595)
.|||||||+|.++..|++... ...+.++|+++.++..|.++ ++ ++.+..+|+..+. ++++++|.|++.+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~- 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD- 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-
T ss_pred eEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc-
Confidence 799999999999999999854 45889999999999887654 55 5888888887775 889999999998876
Q ss_pred ccccCH--------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 PFTAYN--------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 h~~~d~--------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+|+... ..+|.++.|+|||||.|.+.+- ...-++.+.+.+.+.++....
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD------~~~y~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD------NRGLFEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES------CHHHHHHHHHHHHHHTCEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEEC------ChHHHHHHHHHHHHCCCcccc
Confidence 555322 4799999999999999999761 122244466666655654443
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=6.3e-12 Score=124.77 Aligned_cols=143 Identities=17% Similarity=0.122 Sum_probs=99.4
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC--CC-----------------
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG--IP----------------- 247 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg--~~----------------- 247 (595)
+..+.+.+.....+..+|||+|||+|.+....+.... ..++++|+|+.+++.+++.- ..
T Consensus 41 ~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~--~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 118 (263)
T d2g72a1 41 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF--EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 118 (263)
T ss_dssp HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC--SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC--CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhcc
Confidence 4555555554444456999999999988766555533 37899999999999987641 00
Q ss_pred ----------------eEEEEcccc------cCCCCCCceeEEEEcCCCcccccC---HHHHHHHHHhhcCCCcEEEEEc
Q 007645 248 ----------------AFVAMLGTR------RLPFPAFSFDIVHCSRCLIPFTAY---NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 248 ----------------~~~~~~d~~------~LPfpd~sFDlV~~s~vL~h~~~d---~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
......|+. ..+++.++||+|+|.+|++|...+ ...+++++.++|||||+|++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~ 198 (263)
T d2g72a1 119 KGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 198 (263)
T ss_dssp SCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 011222321 223556789999999999888644 4588999999999999999987
Q ss_pred CCCCC---------CCCchhHHHHHHHHHHcCcEEEEe
Q 007645 303 PPVQW---------PKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 303 p~~~~---------~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+.... .......+.+.++++..|++++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~ 236 (263)
T d2g72a1 199 ALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL 236 (263)
T ss_dssp EESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred ccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence 62211 111123567999999999988754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.24 E-value=3.5e-11 Score=119.04 Aligned_cols=137 Identities=20% Similarity=0.182 Sum_probs=94.3
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPfpd 262 (595)
.+.+.++... .++|||||||+|.++..|+++. +.+.++.+|+ +.+++.|+++ +. .+.+...+... +.+
T Consensus 72 ~~~~~~d~~~--~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 72 APADAYDWSA--VRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP- 145 (256)
T ss_dssp HHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-
T ss_pred HHHhcCCCcc--CCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-
Confidence 3444444333 4589999999999999999984 3457778897 5677776654 33 35666666543 444
Q ss_pred CceeEEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCch--------------------hHHHHHHHH
Q 007645 263 FSFDIVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDK--------------------EWADLQAVA 321 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~--------------------~w~~l~~la 321 (595)
.+||+|++.++|++|.+ +...+|+++.++|||||++++.+....-..... ..+++.+++
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll 225 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA 225 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 46999999999999973 224789999999999999999875211101100 123467788
Q ss_pred HHcCcEEEEe
Q 007645 322 RALCYELIAV 331 (595)
Q Consensus 322 ~~~~w~~v~~ 331 (595)
++.||+.+..
T Consensus 226 ~~AGf~~~~~ 235 (256)
T d1qzza2 226 GSAGLALASE 235 (256)
T ss_dssp HTTTEEEEEE
T ss_pred HHCCCceeEE
Confidence 8889887755
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=1.2e-11 Score=119.29 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=87.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
......+.+.+...++. +|||||||+|.+++.|++..-....++++|+++.+++.|+++ +. +..+.+.|....
T Consensus 61 P~~~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~ 138 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (213)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred chhhHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc
Confidence 34455667777777766 999999999999999987632334688899999999999876 33 566777787777
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++.+++||+|++..++++.+ .++.+.|||||++++..
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred cccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 77788999999999987764 24678899999999864
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.18 E-value=3.9e-11 Score=115.51 Aligned_cols=103 Identities=10% Similarity=-0.019 Sum_probs=77.3
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccCCCCCCc---eeE
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPAFS---FDI 267 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~LPfpd~s---FDl 267 (595)
++..+|+ +|||+|||+|.++..|++.-.. ..+.++|+|+.+++.|+++ ..++.+...+....+.+... +|+
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~ 128 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDL 128 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEE
Confidence 4555555 9999999999999999987322 3799999999999988765 34677777777665544444 555
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
|++ .+.|. .+...++.++.|+|||||++++..
T Consensus 129 v~~--~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 129 IYQ--DIAQK-NQIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEE--CCCST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEe--cccCh-hhHHHHHHHHHHHhccCCeEEEEE
Confidence 543 34343 366789999999999999999875
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.15 E-value=2.5e-10 Score=109.52 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=90.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccCC--CCCCceeEEEEcCCCc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRLP--FPAFSFDIVHCSRCLI 275 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~LP--fpd~sFDlV~~s~vL~ 275 (595)
.|||||||+|.++..+++... ...+.|+|+++.++..|.++ ++ ++.+..+|+..+. +++.++|.|++.+.-
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd- 111 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD- 111 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-
T ss_pred eEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc-
Confidence 799999999999999999854 35789999999998887654 55 5888888887765 788999999988754
Q ss_pred ccccCH--------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 276 PFTAYN--------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 276 h~~~d~--------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+|+... ..+|.++.|+|||||.|.+.+- ...-...+.+...+.++....
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD------~~~Y~~~~le~~~~~~~~~~~ 168 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD------NRGLFEYSLVSFSQYGMKLNG 168 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES------CHHHHHHHHHHHHHHTCEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC------CccHHHHHHHHHHHCCccccc
Confidence 665322 5789999999999999999762 111133344555555665443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.14 E-value=7.4e-11 Score=116.70 Aligned_cols=106 Identities=10% Similarity=0.122 Sum_probs=80.8
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C--CCeEEEEcccccCCCCC
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G--IPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g--~~~~~~~~d~~~LPfpd 262 (595)
.|...+...+|. +|||+|||+|.++..|++.-.....+.++|.++.+++.|+++ + .++.+...|.... +++
T Consensus 76 ~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD 152 (250)
T ss_dssp -----CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred HHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence 345556666666 999999999999999998622234788899999999999876 1 2567788777655 567
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++||+|++. .+ ++..++.++.++|||||++++..|
T Consensus 153 ~~fD~V~ld-----~p-~p~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 153 QMYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CCEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred ceeeeeeec-----CC-chHHHHHHHHHhcCCCceEEEEeC
Confidence 899999863 22 556789999999999999999877
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=1.2e-10 Score=113.13 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=84.1
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----C------CCeEEEEccc
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----G------IPAFVAMLGT 255 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g------~~~~~~~~d~ 255 (595)
....+.+.+.....+..+|||||||+|..++.|++.--....+.++|.++++++.|+++ + .+..+..+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 34455666633222344999999999999998887622334788899999999998765 2 3467788888
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+.+++.||.|++..++.+.+ .++.+.|||||++++...
T Consensus 142 ~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv~ 182 (224)
T d1i1na_ 142 RMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPVG 182 (224)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEES
T ss_pred ccccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEEc
Confidence 88777888999999999887654 357889999999999653
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=4.9e-11 Score=122.30 Aligned_cols=117 Identities=11% Similarity=0.025 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--------------CC
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--------------GI 246 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--------------g~ 246 (595)
......+..+.+.+....+. +|||+|||+|.++..++... ....+.|+|+++.+++.|++. ..
T Consensus 134 e~~~~~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~-~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~ 210 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAAT-NCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 210 (328)
T ss_dssp CCCHHHHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHC-CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 33456677777888777666 99999999999999887652 233688999999999988653 23
Q ss_pred CeEEEEcccccCCCCCCce--eEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 247 PAFVAMLGTRRLPFPAFSF--DIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 247 ~~~~~~~d~~~LPfpd~sF--DlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
++.+.++|+..+++.+..| |+|+++. +.++. +....|.|+.|+|||||+++...
T Consensus 211 ~i~~~~gd~~~~~~~~~~~~advi~~~~-~~f~~-~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 211 EYTLERGDFLSEEWRERIANTSVIFVNN-FAFGP-EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CEEEEECCTTSHHHHHHHHHCSEEEECC-TTTCH-HHHHHHHHHHTTCCTTCEEEESS
T ss_pred ceEEEECcccccccccccCcceEEEEcc-eecch-HHHHHHHHHHHhCCCCcEEEEec
Confidence 5889999998888776655 5666654 44554 67789999999999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.3e-10 Score=115.75 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH---HcC--CCeEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL---ERG--IPAFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~---erg--~~~~~~~~d~~~ 257 (595)
...|.+.|.+......++ +|||||||+|.++..++++|.. .+.++|.++.+...++ +++ ..+.+...++.+
T Consensus 20 ~~~y~~ai~~~~~~~~~~--~VLDiGcG~G~lsl~aa~~Ga~--~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~ 95 (311)
T d2fyta1 20 TESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEE 95 (311)
T ss_dssp HHHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHHhccccCCcC--EEEEECCCCCHHHHHHHHcCCC--EEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHH
Confidence 356777776665555554 8999999999999999998753 6788899998765433 333 347888899999
Q ss_pred CCCCCCceeEEEEcCCCccccc--CHHHHHHHHHhhcCCCcEEEE
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTA--YNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~--d~~~~L~Ei~RvLRPGG~lvl 300 (595)
+++++++||+|+|....++... ....++....|+|||||+++-
T Consensus 96 l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 9999999999999766644432 235777888999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=2e-10 Score=117.22 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCC--CeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGI--PAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~--~~~~~~~d~~~ 257 (595)
..|.+.|.+......++ +|||||||+|.++..++++|.. .+.++|.++ +++.|+ +++. .+.++..+...
T Consensus 24 ~~y~~aI~~~~~~~~~~--~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~ 98 (328)
T d1g6q1_ 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAK--HVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLED 98 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCS--EEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred HHHHHHHHhccccCCcC--EEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhh
Confidence 34556665544444444 8999999999999999988754 677889886 344443 3343 47888889999
Q ss_pred CCCCCCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEE
Q 007645 258 LPFPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLV 299 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lv 299 (595)
+++++++||+|++..+..+.. .....++.++.|+|||||.++
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 999999999999976664443 356688999999999999885
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.07 E-value=4.4e-10 Score=111.96 Aligned_cols=129 Identities=12% Similarity=0.128 Sum_probs=93.9
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccccCCC
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRRLPF 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~LPf 260 (595)
+..|...+...+|. +|||+|||+|.++..|++.-.....+.++|.++.+++.|+++ +. .+.+...|. ...+
T Consensus 92 ~~~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~-~~~~ 168 (266)
T d1o54a_ 92 SSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI-SEGF 168 (266)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG-GGCC
T ss_pred HHHHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc-cccc
Confidence 34566777777776 999999999999999998733445788999999999999876 33 244444443 3356
Q ss_pred CCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 261 PAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
+...||.|+. +.+ ++..++.++.++|||||++++..|.. ....++.+.+++.+|..+.
T Consensus 169 ~~~~~D~V~~-----d~p-~p~~~l~~~~~~LKpGG~lv~~~P~~------~Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 169 DEKDVDALFL-----DVP-DPWNYIDKCWEALKGGGRFATVCPTT------NQVQETLKKLQELPFIRIE 226 (266)
T ss_dssp SCCSEEEEEE-----CCS-CGGGTHHHHHHHEEEEEEEEEEESSH------HHHHHHHHHHHHSSEEEEE
T ss_pred cccceeeeEe-----cCC-CHHHHHHHHHhhcCCCCEEEEEeCcc------cHHHHHHHHHHHCCceeEE
Confidence 6788999874 444 67789999999999999999987621 1123444555667886543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=5.5e-10 Score=113.46 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=83.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHcCC--CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALERGI--PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~erg~--~~~~~~~d~~~L 258 (595)
..|.+.|.+......++ +|||||||+|.++..++++|.. .+.++|.++.+... ++.++. .+.+...+...+
T Consensus 19 ~~y~~ai~~~~~~~~~~--~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 19 LTYRNSMFHNRHLFKDK--VVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEV 94 (316)
T ss_dssp HHHHHHHHTCHHHHTTC--EEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCcC--EEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHc
Confidence 44555554433333444 8999999999999999998753 56788888754332 233444 378888999999
Q ss_pred CCCCCceeEEEEcCCCcccc--cCHHHHHHHHHhhcCCCcEEEE
Q 007645 259 PFPAFSFDIVHCSRCLIPFT--AYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~--~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
+++.++||+|++..+.+... .....++..+.|+|||||.++-
T Consensus 95 ~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 99999999999976654443 3467899999999999999863
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.99 E-value=9.2e-10 Score=106.97 Aligned_cols=105 Identities=10% Similarity=0.033 Sum_probs=82.0
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEcccccCCCCC
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGTRRLPFPA 262 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~~~LPfpd 262 (595)
....+.+.+....+. +|||||||+|.+++.|++.. ..++++|.++.+++.|+++ ..++.+...|...-..+.
T Consensus 58 ~~a~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGG
T ss_pred hHHHHHHHhhhcccc--eEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhcccccccccCchhhcchhh
Confidence 334566777777766 99999999999999998874 3677889999999999876 346778888765544456
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.||.|++..++.+.+ ..+.+.|||||++++..
T Consensus 133 ~pfD~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp CCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhHHHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 7899999998887654 24567899999999854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=9.3e-10 Score=112.58 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=80.6
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----------------CCCeEE
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----------------GIPAFV 250 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----------------g~~~~~ 250 (595)
+..|...+...+|. +|||+|||+|.++..|++.-.....+.++|+++.+++.|+++ ..++.+
T Consensus 87 ~~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 87 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 34556667777766 999999999999999998722233678889999999999865 124677
Q ss_pred EEcccccCC--CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 251 AMLGTRRLP--FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 251 ~~~d~~~LP--fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...|+.... +++.+||.|+. +++ ++..++.++.++|||||+|++..|
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~L-----D~p-~P~~~l~~~~~~LKpGG~lv~~~P 213 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVAL-----DML-NPHVTLPVFYPHLKHGGVCAVYVV 213 (324)
T ss_dssp EESCTTCCC-------EEEEEE-----CSS-STTTTHHHHGGGEEEEEEEEEEES
T ss_pred EecchhhcccccCCCCcceEee-----cCc-CHHHHHHHHHHhccCCCEEEEEeC
Confidence 777766553 46788999985 333 445689999999999999999877
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.92 E-value=3.6e-09 Score=102.85 Aligned_cols=132 Identities=11% Similarity=0.103 Sum_probs=87.9
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---CCCeEEEEccc---ccCCCCCCceeE
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---GIPAFVAMLGT---RRLPFPAFSFDI 267 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---g~~~~~~~~d~---~~LPfpd~sFDl 267 (595)
++..+|. +|||+|||+|.++..|++.--....+.++|+++.+++.++++ ..+...+..+. ...+.....+|+
T Consensus 69 l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 69 FPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 3455555 999999999999999998721234788999999999988766 22355555554 333445578999
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC--CCCCCCCchh-HHHHHHHHHHcCcEEEEe
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP--PVQWPKQDKE-WADLQAVARALCYELIAV 331 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p--~~~~~~~~~~-w~~l~~la~~~~w~~v~~ 331 (595)
|++.. .+ +++...++.++.+.|||||+++++.. ...+...... ....+++.+ -+|+.+..
T Consensus 147 i~~d~--~~-~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~-~gf~iie~ 209 (227)
T d1g8aa_ 147 IFEDV--AQ-PTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELS-EYFEVIER 209 (227)
T ss_dssp EEECC--CS-TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHH-TTSEEEEE
T ss_pred EEEEc--cc-cchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHH-cCCEEEEE
Confidence 98753 23 23567899999999999999998753 1222211111 333444443 37777643
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=2.2e-09 Score=112.76 Aligned_cols=119 Identities=8% Similarity=0.018 Sum_probs=84.4
Q ss_pred ccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcC-----------C
Q 007645 179 FADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERG-----------I 246 (595)
Q Consensus 179 F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg-----------~ 246 (595)
++.-...++..+.+.+...++. ++||+|||+|.++..++.. +. ..+.|+|+++.+++.|+++. .
T Consensus 197 YGEl~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~--~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~ 272 (406)
T d1u2za_ 197 YGELLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGC--ALSFGCEIMDDASDLTILQYEELKKRCKLYGM 272 (406)
T ss_dssp CCCBCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred cccCCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcc
Confidence 4445567788888888887766 9999999999999999876 32 36789999999999997641 1
Q ss_pred ---CeEEE-EcccccCCCC---CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 247 ---PAFVA-MLGTRRLPFP---AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 247 ---~~~~~-~~d~~~LPfp---d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...+. ..+....++. -..+|+|+++. +.+. ++....|.|+.|+|||||+++.+.+
T Consensus 273 ~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~-~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 273 RLNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FLFD-EDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp CCCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TTCC-HHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ccccceeeeeechhhccccccccccceEEEEec-ccCc-hHHHHHHHHHHHhcCCCcEEEEecc
Confidence 12222 2222222111 12468888764 3344 4678999999999999999988653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.2e-08 Score=101.89 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=95.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEcccccC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRRL 258 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~L 258 (595)
+..++...+.+... ..+|||+|||+|..+..++.... ...++++|+|+.+++.|+++ ++ ++.+...|...
T Consensus 95 E~lv~~~l~~~~~~---~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~- 169 (274)
T d2b3ta1 95 ECLVEQALARLPEQ---PCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS- 169 (274)
T ss_dssp HHHHHHHHHHSCSS---CCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-
T ss_pred hhhhhhHhhhhccc---ccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-
Confidence 34455554444332 34799999999999999988743 45889999999999999876 55 47888877543
Q ss_pred CCCCCceeEEEEcCCCcccc------------------------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhH
Q 007645 259 PFPAFSFDIVHCSRCLIPFT------------------------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEW 314 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~------------------------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w 314 (595)
++++++||+|+|+--...-. .....++.++.+.|+|||.+++... + ..-
T Consensus 170 ~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig---~----~q~ 242 (274)
T d2b3ta1 170 ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG---W----QQG 242 (274)
T ss_dssp GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC---S----SCH
T ss_pred ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC---c----hHH
Confidence 45677999999975432210 0112578899999999999999643 1 113
Q ss_pred HHHHHHHHHcCcEEE
Q 007645 315 ADLQAVARALCYELI 329 (595)
Q Consensus 315 ~~l~~la~~~~w~~v 329 (595)
..+.+++++.+|..+
T Consensus 243 ~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 243 EAVRQAFILAGYHDV 257 (274)
T ss_dssp HHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHCCCCeE
Confidence 567888888888644
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.73 E-value=1.3e-08 Score=98.50 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=80.1
Q ss_pred HHHHHhhc--cccCCCcceEEEECCCCcHHHHHHhhc----CC-ceEEEEeecCcHHHHHHHHHc----------CCCeE
Q 007645 187 IDKLKQYI--PITGGTLRTALDMGCGVASFGGSMLSE----NI-LTLSFAPRDSHKAQIQFALER----------GIPAF 249 (595)
Q Consensus 187 i~~L~~~l--~~~~g~~r~VLDIGCGtG~~a~~La~~----gv-~~~~v~~vD~s~~~l~~A~er----------g~~~~ 249 (595)
...+.+.+ ...++ .+|||||||+|.+++.|++. ++ ....+.++|.++++++.|+++ ..++.
T Consensus 67 ~a~~l~~L~~~l~~g--~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~ 144 (223)
T d1r18a_ 67 HAFALEYLRDHLKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 144 (223)
T ss_dssp HHHHHHHTTTTCCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHhhccCCC--CeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence 34455555 33444 49999999999999888765 21 223688889999999998765 23578
Q ss_pred EEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 250 ~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+...|......+.+.||.|++..++.+.+ ..+.+.|||||++++..
T Consensus 145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp EEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred EEecccccccccccceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 88888777666678999999999886654 24678999999998854
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.72 E-value=2.9e-08 Score=93.67 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=71.0
Q ss_pred CcceEEEECCCCcH----HHHHHhhc---CCceEEEEeecCcHHHHHHHHHc--------CCC-----------------
Q 007645 200 TLRTALDMGCGVAS----FGGSMLSE---NILTLSFAPRDSHKAQIQFALER--------GIP----------------- 247 (595)
Q Consensus 200 ~~r~VLDIGCGtG~----~a~~La~~---gv~~~~v~~vD~s~~~l~~A~er--------g~~----------------- 247 (595)
..-+|+++|||+|. ++..+.+. ....+.+.+.|+++.+++.|++. ..+
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 34589999999994 45445443 12246899999999999999742 000
Q ss_pred -----------eEEEEcccc-cCCCCCCceeEEEEcCCCcccccC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 248 -----------AFVAMLGTR-RLPFPAFSFDIVHCSRCLIPFTAY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 248 -----------~~~~~~d~~-~LPfpd~sFDlV~~s~vL~h~~~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+...+.. ..+.+.+.||+|+|.++|+++.+. ...++..+.+.|+|||+|++-.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 112222221 123345789999999999887632 2589999999999999988743
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=2.3e-08 Score=96.33 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHc----C-CCeEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALER----G-IPAFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~er----g-~~~~~~~~d~~~ 257 (595)
......+.+.+....+. +|||||||+|..++.|+.. + ..++.+|.++.+++.|+++ + .++.+..+|...
T Consensus 64 P~~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g---~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~ 138 (215)
T d1jg1a_ 64 PHMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVK---TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK 138 (215)
T ss_dssp HHHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHC---SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG
T ss_pred hhhHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhC---ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcccc
Confidence 34455667777777766 9999999999999998876 3 2467789999999998875 4 467888888766
Q ss_pred CCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.....+.||.|++..+..+.+ . .+...|+|||++++..
T Consensus 139 g~~~~~pfD~Iiv~~a~~~ip---~----~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 139 GFPPKAPYDVIIVTAGAPKIP---E----PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CCGGGCCEEEEEECSBBSSCC---H----HHHHTEEEEEEEEEEE
T ss_pred CCcccCcceeEEeecccccCC---H----HHHHhcCCCCEEEEEE
Confidence 555678899999998886654 2 2456799999999854
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.69 E-value=9.9e-08 Score=94.27 Aligned_cols=145 Identities=9% Similarity=0.115 Sum_probs=99.2
Q ss_pred CCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--Ce
Q 007645 175 GGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PA 248 (595)
Q Consensus 175 ~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~ 248 (595)
..+.|..+...-...+.+.+. .| .+|||+|||+|.++..+++++. ..+.++|+++.+++.++++ ++ .+
T Consensus 86 ~~~~f~~~~~~er~ri~~~~~--~g--~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v 159 (260)
T d2frna1 86 AKIMFSPANVKERVRMAKVAK--PD--ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRM 159 (260)
T ss_dssp TTSCCCGGGHHHHHHHHHHCC--TT--CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTE
T ss_pred ccccEecCCHHHHHHHHhhcC--Cc--cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceE
Confidence 345555555544555666543 33 4999999999999999998853 3788999999999988765 44 36
Q ss_pred EEEEcccccCCCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEE
Q 007645 249 FVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYEL 328 (595)
Q Consensus 249 ~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~ 328 (595)
.+..+|+..++. .+.||.|++... .....++.++.++|++||.+.+.............-+.+.++++..++++
T Consensus 160 ~~~~~D~~~~~~-~~~~D~Ii~~~p-----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v 233 (260)
T d2frna1 160 SAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 233 (260)
T ss_dssp EEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred EEEEcchHHhcc-CCCCCEEEECCC-----CchHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCce
Confidence 778888877753 578999987532 13346788899999999998664321001111122455777888888877
Q ss_pred EEe
Q 007645 329 IAV 331 (595)
Q Consensus 329 v~~ 331 (595)
...
T Consensus 234 ~~~ 236 (260)
T d2frna1 234 EKL 236 (260)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.4e-07 Score=87.18 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=75.5
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEccccc---
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRR--- 257 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~--- 257 (595)
...+.+.+++...-....+|||+|||+|.++...+.+|. +++.+|.++.+++.++++ +....+...+...
T Consensus 26 ~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga---~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~ 102 (171)
T d1ws6a1 26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLP 102 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHH
T ss_pred HHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc---hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccc
Confidence 334455555543222334899999999999999999875 455689999999988765 6665665554322
Q ss_pred -CCCCCCceeEEEEcCCCcccccCHHHHHHHH--HhhcCCCcEEEEEcC
Q 007645 258 -LPFPAFSFDIVHCSRCLIPFTAYNATYLIEV--DRLLRPGGYLVISGP 303 (595)
Q Consensus 258 -LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei--~RvLRPGG~lvls~p 303 (595)
......+||+|++.--+ ..+....+.++ ..+|+|||++++..+
T Consensus 103 ~~~~~~~~fD~If~DPPY---~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 103 EAKAQGERFTVAFMAPPY---AMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHTTCCEEEEEECCCT---TSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccccCCccceeEEcccc---ccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 23455789999987543 11223334443 357999999998654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=3.2e-07 Score=93.15 Aligned_cols=101 Identities=18% Similarity=0.050 Sum_probs=75.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc----CCCCCCceeEEEEc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR----LPFPAFSFDIVHCS 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~----LPfpd~sFDlV~~s 271 (595)
.+|||+|||+|.++..++..|.. .++++|+++.+++.|+++ |+ .+.+.+.|+.. ++....+||+|++.
T Consensus 147 ~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 49999999999999999988643 788999999999998765 55 36777777533 34456789999985
Q ss_pred CCCcccc-c-------CHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 272 RCLIPFT-A-------YNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 272 ~vL~h~~-~-------d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
.--..-. . +...++..+.++|||||.|++++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 4221111 1 1235788899999999999998753
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=2.7e-07 Score=87.53 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=59.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCL 274 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL 274 (595)
+++|||+|||+|.++..++.+|.. .++++|+++.+++.|+++..++.+.+.|...++ +.||+|+++--+
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~---~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS---GKYDTWIMNPPF 117 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC---CCEEEEEECCCC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccccccEEEEehhhcC---CcceEEEeCccc
Confidence 349999999999999888887653 688999999999999999888999999988764 679999998654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.48 E-value=1.4e-07 Score=92.38 Aligned_cols=110 Identities=14% Similarity=0.037 Sum_probs=77.7
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCcee
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFD 266 (595)
.+.+.+.++.. ...++|||||||+|.++..++++.. .+..+..|.. ..++.+.. ...+.+..+|..+ +.| ..|
T Consensus 69 ~~~l~~~~~~f-~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~~~~-~~ri~~~~gd~~~-~~p--~~D 141 (244)
T d1fp1d2 69 MKRMLEIYTGF-EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDLP-QVIENAPP-LSGIEHVGGDMFA-SVP--QGD 141 (244)
T ss_dssp HHHHHHHCCTT-TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECH-HHHTTCCC-CTTEEEEECCTTT-CCC--CEE
T ss_pred HHHHHHhcccc-cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecch-hhhhccCC-CCCeEEecCCccc-ccc--cce
Confidence 34455555522 2356999999999999999999843 3466677874 33322211 2346777777543 344 459
Q ss_pred EEEEcCCCccccc-CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 267 IVHCSRCLIPFTA-YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 267 lV~~s~vL~h~~~-d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
++++.++|++|.+ +...+|+.+.+.|+|||.+++.+.
T Consensus 142 ~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~ 179 (244)
T d1fp1d2 142 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF 179 (244)
T ss_dssp EEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 9999999999983 234889999999999999999874
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.46 E-value=1e-07 Score=96.69 Aligned_cols=100 Identities=19% Similarity=0.098 Sum_probs=75.3
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc----CCCCCCceeEEEEc
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR----LPFPAFSFDIVHCS 271 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~----LPfpd~sFDlV~~s 271 (595)
..+|||++||+|.++.+++.. +.+++++|+|+.+++.|+++ |+ +..+...|... ++...++||+|++.
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 449999999999999988753 45889999999999998865 55 47788887543 34456789999985
Q ss_pred CCCcc-cc-------cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 272 RCLIP-FT-------AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 272 ~vL~h-~~-------~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
---.. -. .+...++..+.++|||||.+++++.
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32111 01 1223678899999999999999875
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=5.6e-08 Score=91.27 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=69.2
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCC-CCchhHHhhccchhhhcccCCCCCCCCCccchhhccCccccccCCCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARK-SSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKNPGSN 522 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~-~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~~~~~~~ 522 (595)
.|||+|||.|.|+..|.. + +-.|- ++.+.++-+|++- .+....+.++..+.+||+|++..++.+..
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~-----~giD~s~~~~~~a~~~~~~-~~~~d~~~l~~~~~~fD~I~~~~~l~h~~----- 105 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--K-----IGVEPSERMAEIARKRGVF-VLKGTAENLPLKDESFDFALMVTTICFVD----- 105 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--C-----EEEESCHHHHHHHHHTTCE-EEECBTTBCCSCTTCEEEEEEESCGGGSS-----
T ss_pred eEEEECCCCcccccccce--E-----EEEeCChhhcccccccccc-ccccccccccccccccccccccccccccc-----
Confidence 599999999999999864 2 22343 4788888888743 44455566665569999999999998763
Q ss_pred CCCCChhhhHHhhcccccCCcEEEEe
Q 007645 523 KNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 523 ~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+...+|-|+-|+|+|||.+++.
T Consensus 106 ----d~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 106 ----DPERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp ----CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----ccccchhhhhhcCCCCceEEEE
Confidence 3678999999999999999996
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.39 E-value=2e-07 Score=84.32 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=72.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEccccc-CCCCCCceeEEEEcCC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTRR-LPFPAFSFDIVHCSRC 273 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~~-LPfpd~sFDlV~~s~v 273 (595)
..+|||+|||+|.++...+.+|.. +++.+|.++.+++.++++ +. ...+...|+.. +....++||+|++.--
T Consensus 15 g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 15 GGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 348999999999999999998764 788899999999888765 33 26777777654 3455789999998643
Q ss_pred CcccccCHHHHHHHH--HhhcCCCcEEEEEcC
Q 007645 274 LIPFTAYNATYLIEV--DRLLRPGGYLVISGP 303 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei--~RvLRPGG~lvls~p 303 (595)
... ......+..+ .+.|+|||.+++..+
T Consensus 93 y~~--~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 93 YAK--ETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SHH--HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hcc--chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 211 1223455544 357999999998754
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=4.5e-06 Score=78.80 Aligned_cols=126 Identities=10% Similarity=0.019 Sum_probs=81.3
Q ss_pred HhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCcee
Q 007645 191 KQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFD 266 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFD 266 (595)
+.......|. +|||+|||+|.++..++.+|. ..++++|+++.+++.|+++ +....+...|...+ ++.||
T Consensus 39 ~~~~~dl~g~--~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD 111 (201)
T d1wy7a1 39 AYSLGDIEGK--VVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVD 111 (201)
T ss_dssp HHHTTSSTTC--EEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCS
T ss_pred HHhcCCCCCC--EEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCc
Confidence 3334444444 899999999999998888864 3788999999999999876 56778888887665 36799
Q ss_pred EEEEcCCCcccccCH-HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 267 IVHCSRCLIPFTAYN-ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 267 lV~~s~vL~h~~~d~-~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
+|+++--+....... ..++... +.+++.++.... ........++.++...+|.....
T Consensus 112 ~Vi~nPP~~~~~~~~d~~~l~~~---~~~~~~v~~ih~-----~~~~~~~~i~~~~~~~g~~i~~~ 169 (201)
T d1wy7a1 112 IVIMNPPFGSQRKHADRPFLLKA---FEISDVVYSIHL-----AKPEVRRFIEKFSWEHGFVVTHR 169 (201)
T ss_dssp EEEECCCCSSSSTTTTHHHHHHH---HHHCSEEEEEEE-----CCHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEcCccccccccccHHHHHHH---Hhhcccchhccc-----chHHHHHHHHHHHhhcCceEEEE
Confidence 999987653322111 2333333 333444433311 11122334667778888876544
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.36 E-value=4.5e-07 Score=85.56 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=85.7
Q ss_pred HHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccC---
Q 007645 186 YIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL--- 258 (595)
Q Consensus 186 yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~L--- 258 (595)
.++.+.+.+....+. ++||++||+|.++..++++. ....+.++|.++.+++.|+++ +..+.+...+...+
T Consensus 11 ll~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~-~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 11 MVREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHC-PGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL 87 (192)
T ss_dssp THHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcC-CCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH
Confidence 355666666666655 99999999999999999984 346899999999999999987 44577777765443
Q ss_pred --CCCCCceeEEEEcCCCccc--c------cCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 --PFPAFSFDIVHCSRCLIPF--T------AYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 --Pfpd~sFDlV~~s~vL~h~--~------~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.+..++||.|+.-..+... . ......|..+.++|+|||.+++.+
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 2446789999865433211 1 133478999999999999999876
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.25 E-value=1.3e-06 Score=85.07 Aligned_cols=97 Identities=14% Similarity=0.063 Sum_probs=72.4
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
..+|||||||+|.++..++++.. ...++..|.. ..++.+.. ..++.+...|... +.+ .+|++++.++||+|.++
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~~~~~-~~rv~~~~gD~f~-~~p--~aD~~~l~~vLHdw~d~ 154 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFP-KLKCIVFDRP-QVVENLSG-SNNLTYVGGDMFT-SIP--NADAVLLKYILHNWTDK 154 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCT-TCEEEEEECH-HHHTTCCC-BTTEEEEECCTTT-CCC--CCSEEEEESCGGGSCHH
T ss_pred ceEEEEecCCccHHHHHHHHhCC-CCeEEEecCH-HHHHhCcc-cCceEEEecCccc-CCC--CCcEEEEEeecccCChH
Confidence 45899999999999999999843 3467778874 34443322 2357788777654 333 57999999999999833
Q ss_pred H-HHHHHHHHhhcCCC---cEEEEEcC
Q 007645 281 N-ATYLIEVDRLLRPG---GYLVISGP 303 (595)
Q Consensus 281 ~-~~~L~Ei~RvLRPG---G~lvls~p 303 (595)
. ..+|+.+.+.|+|| |++++.+.
T Consensus 155 ~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 155 DCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp HHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred HHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 2 48899999999998 77887764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.25 E-value=2.5e-06 Score=86.27 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=74.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEccccc----CCCCCCceeEEEE
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRR----LPFPAFSFDIVHC 270 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~----LPfpd~sFDlV~~ 270 (595)
++|||+.||+|.|+..++..|. ..++.+|+++.+++.|+++ ++ +..++..|+.. +.-..+.||+|++
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 4899999999999998887654 3678889999999988865 44 36788887632 2234568999998
Q ss_pred cCC--------CcccccCHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 271 SRC--------LIPFTAYNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 271 s~v--------L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
.-- +.....+...++..+.++|+|||.+++++..
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 421 1111123346888899999999999998863
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=2.5e-06 Score=85.91 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=72.2
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccccC----CCCCCceeEEE
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTRRL----PFPAFSFDIVH 269 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~~L----Pfpd~sFDlV~ 269 (595)
..+|||+.||+|.++..++..|. +++.+|.|+.+++.|+++ ++ .+.+++.|+.+. ....+.||+|+
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA---~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCCC---eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 34899999999999999998764 678889999999999875 44 367888875432 22357899999
Q ss_pred EcCCC-------cccc--cCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCL-------IPFT--AYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL-------~h~~--~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+.--- ..+. .+...++..+.++|+|||.+++.+.
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 84210 0111 2234566778899999998776654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1e-05 Score=78.97 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=85.9
Q ss_pred HHHHHHHhhcc---ccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccc
Q 007645 185 KYIDKLKQYIP---ITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGT 255 (595)
Q Consensus 185 ~yi~~L~~~l~---~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~ 255 (595)
.|+..+.+++. .......++||+|||+|..+..|+.+. ....++++|+++.+++.|+++ ++. +.+...+.
T Consensus 43 ~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~-~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~ 121 (250)
T d2h00a1 43 NYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL-NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ 121 (250)
T ss_dssp HHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH-HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhC-CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeecc
Confidence 34444554443 222345689999999999999998872 345899999999999999876 333 44444332
Q ss_pred ccC------CCCCCceeEEEEcCCCccccc----------------------------------CHHHHHHHHHhhcCCC
Q 007645 256 RRL------PFPAFSFDIVHCSRCLIPFTA----------------------------------YNATYLIEVDRLLRPG 295 (595)
Q Consensus 256 ~~L------Pfpd~sFDlV~~s~vL~h~~~----------------------------------d~~~~L~Ei~RvLRPG 295 (595)
... ...++.||+|+|+--++.-.+ ....++.+..+.++..
T Consensus 122 ~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~ 201 (250)
T d2h00a1 122 KTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRL 201 (250)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGB
T ss_pred HHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcC
Confidence 221 134568999999876653210 0123456667778888
Q ss_pred cEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEE
Q 007645 296 GYLVISGPPVQWPKQDKEWADLQAVARALCYELI 329 (595)
Q Consensus 296 G~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v 329 (595)
|.+..... +...-+.+.+++++.++..+
T Consensus 202 g~~t~~ig------~~~~l~~i~~~L~~~g~~~i 229 (250)
T d2h00a1 202 RWYSCMLG------KKCSLAPLKEELRIQGVPKV 229 (250)
T ss_dssp SCEEEEES------STTSHHHHHHHHHHTTCSEE
T ss_pred cEEEEEec------chhhHHHHHHHHHHcCCCeE
Confidence 87754332 11223457777777776543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=1.2e-06 Score=83.83 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d 254 (595)
.....++..+.+... .++|||+|||+|..+..|++.-.....+..+|.++.+.+.|+++ |. .+.+..++
T Consensus 42 ~~~G~lL~~lv~~~k-----pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd 116 (214)
T d2cl5a1 42 DAKGQIMDAVIREYS-----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGA 116 (214)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred HHHHHHHHHHHHhhC-----CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecc
Confidence 344455655555432 34899999999999999987632345788889999999988754 54 36777777
Q ss_pred ccc-CC-----CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEE
Q 007645 255 TRR-LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVI 300 (595)
Q Consensus 255 ~~~-LP-----fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvl 300 (595)
... ++ +..+.||+|+.-..-... .....+.+..++|||||++++
T Consensus 117 ~~e~l~~l~~~~~~~~~D~ifiD~~~~~~--~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 117 SQDLIPQLKKKYDVDTLDMVFLDHWKDRY--LPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHHGGGHHHHSCCCCEEEEEECSCGGGH--HHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccccchhhcccccccceeeeccccccc--ccHHHHHHHhCccCCCcEEEE
Confidence 533 22 455789999976322111 123457788899999998765
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=98.21 E-value=3.1e-07 Score=87.95 Aligned_cols=94 Identities=17% Similarity=0.332 Sum_probs=66.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccc--hhhhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGL--IGVYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGl--ig~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
.-|||+|||.|.++..|.+.- =+|+-.|-. +.|.++-+ +|+ +-.+..=.|.++ +| .+||+|.|..++.
T Consensus 18 ~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 93 (234)
T d1xxla_ 18 HRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYAAH 93 (234)
T ss_dssp CEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESCGG
T ss_pred CEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccceeeeeceee
Confidence 359999999999999997752 256656644 66665533 343 222222223333 45 8999999999887
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+. -+...+|=|+.|+|||||++++.+
T Consensus 94 ~~---------~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 94 HF---------SDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp GC---------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc---------cCHHHHHHHHHHeeCCCcEEEEEE
Confidence 54 357889999999999999999863
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.16 E-value=1e-06 Score=83.65 Aligned_cols=93 Identities=20% Similarity=0.372 Sum_probs=66.2
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCC-CccchhhccC-ccccccCCC
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYP-RTYDLIHVSG-IESLIKNPG 520 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typ-rtyDl~H~~~-~~s~~~~~~ 520 (595)
.|||+|||.|.++-.|.+..- .|+=.|-. ..|..+-+||..-....=.+.++ || .+||+|-|.+ ++.+..
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~-~~~~~fD~ii~~~~~~~~~~--- 117 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLP-FPSGAFEAVLALGDVLSYVE--- 117 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTC---EEEEEESCHHHHHHHHHHTCSCEEECCTTSCC-SCTTCEEEEEECSSHHHHCS---
T ss_pred EEEEECCCCchhcccccccce---EEEEeecccccccccccccccccccccccccc-cccccccceeeecchhhhhh---
Confidence 589999999999999988753 34444544 78888989885322211123343 55 8999998754 555432
Q ss_pred CCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 521 SNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 521 ~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+...+|-|+-|+|+|||.+++..
T Consensus 118 ------d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 118 ------NKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp ------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------hHHHHHHHHHhhcCcCcEEEEEE
Confidence 35668899999999999999973
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=4.5e-06 Score=80.08 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=81.9
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLG 254 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d 254 (595)
.....++..+.+... .++|||||||+|..+..+++.-.....++.+|.++...+.|++. |. .+.+..++
T Consensus 45 ~~~g~lL~~L~~~~~-----~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gd 119 (219)
T d2avda1 45 CEQAQLLANLARLIQ-----AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP 119 (219)
T ss_dssp HHHHHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred HHHHHHHHHHHHccC-----CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEee
Confidence 344556666665543 23899999999999999988632234788889999999888865 33 36677776
Q ss_pred ccc-CC-----CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 255 TRR-LP-----FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 255 ~~~-LP-----fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.. ++ ..+++||+|+... ...+...++..+.+.|+|||.+++-.
T Consensus 120 a~e~l~~~~~~~~~~~fD~ifiD~----dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 120 ALETLDELLAAGEAGTFDVAVVDA----DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp HHHHHHHHHHTTCTTCEEEEEECS----CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhcchhhhhhcccCCccEEEEeC----CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 422 21 3457899999763 33455678899999999999999864
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=98.15 E-value=7.1e-07 Score=84.51 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=64.1
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHH----hhccch--hhhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLI--GVYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGli--g~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
..|||+|||.|.|+.+|.+.-- +|+-.|-. +.+..+ -+.|+. -.++.=.+.++ +| .+||+|++..++.
T Consensus 17 ~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 17 EEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAAH 92 (231)
T ss_dssp CEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCGG
T ss_pred CEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhccccccccccccccccccccc-cccccccccccccccc
Confidence 4799999999999999876543 23333322 444443 233442 22322233333 44 8999999999887
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+. -+.+.+|-|+.|+|+|||+++|.+
T Consensus 93 ~~---------~d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 93 HF---------PNPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp GC---------SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc---------CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 65 357789999999999999999864
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.11 E-value=7.8e-07 Score=88.52 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=72.4
Q ss_pred eeeEEecccchhHHHhhhcCC-CeEEEEeccCCCCCchhH----HhhccchhhhcccCCCCCCCCCccchhhccCccccc
Q 007645 442 IRNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESLI 516 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~~ 516 (595)
=-.|||+|||.|+||..+.+. +.-|.-|.. +++++.. +.+.|+....+.-+.-+...|.+||.|-+..+|.+.
T Consensus 53 g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~l--s~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~ 130 (280)
T d2fk8a1 53 GMTLLDIGCGWGTTMRRAVERFDVNVIGLTL--SKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF 130 (280)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCCEEEEEES--CHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred CCEEEEecCCchHHHHHHHHhCceeEEEecc--hHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence 367999999999999888644 553333322 2255554 555688766665555666678999999999999876
Q ss_pred cCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 517 KNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 517 ~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. .=+...++-++.|+|+|||.++|.
T Consensus 131 ~-------~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 131 G-------HENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp C-------GGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred h-------hhhHHHHHHHHHhccCCCceEEEE
Confidence 3 225678999999999999999985
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=98.08 E-value=6.5e-07 Score=88.24 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=64.4
Q ss_pred eeEEecccchhHHHhhhcCC-CeEEEEeccCCCC-CchhHHhhc----cchh---hh-cccCCCCCCCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSD-PVWVMNVVPARKS-STLSVIYDR----GLIG---VY-HDWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~-~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~-~~wce~f~typ-rtyDl~H~~~ 511 (595)
..|||+|||.|+++..|.++ .. +|+-.|-. ..+..+-+| ||-. +. .|++ .++ +| .+||+|.+..
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~-~l~-~~~~sfD~V~~~~ 143 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL-EIP-CEDNSYDFIWSQD 143 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTT-SCS-SCTTCEEEEEEES
T ss_pred CEEEEeCCCCcHHHhhhhccCCc---EEEEEeccchhhhhhhcccccccccccccccccccc-ccc-ccccccchhhccc
Confidence 59999999999999999654 33 33444432 555544443 5432 22 2332 233 44 8999999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+|-++. +...+|-|+.|+|||||.+++.
T Consensus 144 ~l~h~~---------d~~~~l~~~~~~LkpgG~l~~~ 171 (282)
T d2o57a1 144 AFLHSP---------DKLKVFQECARVLKPRGVMAIT 171 (282)
T ss_dssp CGGGCS---------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhcc---------CHHHHHHHHHHhcCCCcEEEEE
Confidence 887663 3567999999999999999996
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.08 E-value=9.4e-07 Score=82.79 Aligned_cols=114 Identities=17% Similarity=0.208 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCC
Q 007645 423 RRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPF 497 (595)
Q Consensus 423 ~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f 497 (595)
+.++.....++.+.+..+ -.|||+|||.|.++..|.+... +|+-.|-. +.+..+-+| |..- ...|...
T Consensus 21 ~~~~~~~~~~~~~~l~~~--~~ILDiGcG~G~~~~~la~~~~---~v~giD~S~~~i~~ak~~~~~~~~~~--~~~~~d~ 93 (226)
T d1ve3a1 21 RSRIETLEPLLMKYMKKR--GKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRESNV--EFIVGDA 93 (226)
T ss_dssp HHHHHHHHHHHHHSCCSC--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCC--EEEECCT
T ss_pred HHHHHHHHHHHHHhcCCC--CEEEEECCCcchhhhhHhhhhc---ccccccccccchhhhhhhhccccccc--ccccccc
Confidence 444555455554445544 2589999999999999987653 44555544 777666554 3211 1122222
Q ss_pred CC--CC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 498 ST--YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 498 ~t--yp-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
.. +| .+||+|.+..++.++. .-++..+|-|+-|+|+|||.+++...
T Consensus 94 ~~l~~~~~~fD~I~~~~~l~~~~-------~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 94 RKLSFEDKTFDYVIFIDSIVHFE-------PLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp TSCCSCTTCEEEEEEESCGGGCC-------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCcCceEEEEecchhhCC-------hhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 22 33 8999999999888652 23566789999999999999998753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.6e-05 Score=73.73 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=84.5
Q ss_pred cCCeeecCCCCCcccccHHHHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc
Q 007645 166 SGPYFTFPGGGTMFADGADKYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER 244 (595)
Q Consensus 166 e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er 244 (595)
.+.....|.+... .+..+...+.+.+.+.. ..+. +|||++||+|.++.+.+.+|.. .++.+|.+..+++.++++
T Consensus 11 kg~~l~~~~~~~~-RPt~~~vre~lfn~l~~~~~~~--~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N 85 (183)
T d2fpoa1 11 RGRKLPVPDSPGL-RPTTDRVRETLFNWLAPVIVDA--QCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKN 85 (183)
T ss_dssp TTCEEECCCC-------CHHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHH
T ss_pred CCCEecCCCCCCc-CcCcHHHHHHHHhhhhcccchh--hhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHH
Confidence 4455666655321 22234444555555542 2333 8999999999999999999875 567789999999988765
Q ss_pred ----CC-CeEEEEccccc-CCCCCCceeEEEEcCCCcccccCHHHHHHHHHh--hcCCCcEEEEEc
Q 007645 245 ----GI-PAFVAMLGTRR-LPFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGGYLVISG 302 (595)
Q Consensus 245 ----g~-~~~~~~~d~~~-LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~R--vLRPGG~lvls~ 302 (595)
+. +..+...|+.. +......||+|++.--... ......+..+.+ +|+++|.+++..
T Consensus 86 ~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~--~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 86 LATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRR--GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSST--TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred HhhccccceeeeeecccccccccccccCEEEEcCcccc--chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 33 45666666433 3445678999999754321 234555655554 699999999864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.06 E-value=9.7e-06 Score=81.46 Aligned_cols=119 Identities=16% Similarity=0.200 Sum_probs=82.4
Q ss_pred cceEEEECCCCcHHHHHHhhc----CCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccCCCCCCceeEEEEcC
Q 007645 201 LRTALDMGCGVASFGGSMLSE----NILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRLPFPAFSFDIVHCSR 272 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~----gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~LPfpd~sFDlV~~s~ 272 (595)
..+|||.+||+|.++..+.++ ......+.++|+++.+++.|+.+ +....+...+.... .+...||+|+++-
T Consensus 118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~vi~NP 196 (328)
T d2f8la1 118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-LLVDPVDVVISDL 196 (328)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-CCCCCEEEEEEEC
T ss_pred CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc-cccccccccccCC
Confidence 458999999999999887643 44566889999999999888754 56666666654332 3457899999987
Q ss_pred CCcccccC-----------------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHH
Q 007645 273 CLIPFTAY-----------------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVAR 322 (595)
Q Consensus 273 vL~h~~~d-----------------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~ 322 (595)
-+...... ...++..+.+.|+|||++++..|...... .....+++.+.
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~--~~~~~lR~~L~ 261 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGT--SDFAKVDKFIK 261 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGS--TTHHHHHHHHH
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccC--chhHHHHHHHH
Confidence 65322110 12468889999999999999888442221 22445555433
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.04 E-value=3.7e-06 Score=81.57 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=70.6
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccc-c
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT-A 279 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~-~ 279 (595)
.++|||||||+|.++..++++. +.+.++..|..+ .++.+.+ ...+.+...|... +.|. .|+++..+++++|. +
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi~~~~~-~~r~~~~~~d~~~-~~P~--ad~~~l~~vlh~~~d~ 155 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPH-VIEDAPS-YPGVEHVGGDMFV-SIPK--ADAVFMKWICHDWSDE 155 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTT-TTTTCCC-CTTEEEEECCTTT-CCCC--CSCEECSSSSTTSCHH
T ss_pred CcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHH-hhhhccc-CCceEEecccccc-cCCC--cceEEEEEEeecCCHH
Confidence 5689999999999999999984 334666778744 2322221 2356777777533 4443 46778899999987 3
Q ss_pred CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 280 YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 280 d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+...+|+++.+.|+|||.+++.+.
T Consensus 156 ~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 156 HCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp HHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred HHHHHHHHHHHhcCCCceEEEEEE
Confidence 345899999999999999999764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=1.6e-06 Score=82.31 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=77.8
Q ss_pred CCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccC---CCCCCCCCccchhhccC
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWC---EPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wc---e~f~typrtyDl~H~~~ 511 (595)
..-..|||+|||.|.++..|..+-.. .|+=.|-. +.|..+-+| |.-- ++-.| +.++.-+.+||+|.+..
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~~vD~s~~~l~~ak~~~~~~~~~~-~~f~~~d~~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDFLVQAKTYLGEEGKRV-RNYFCCGLQDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCS--EEEEEESCHHHHHHHHHHTGGGGGGE-EEEEECCGGGCCCCSSCEEEEEEES
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCC--EEEEeecCHHHhhccccccccccccc-ccccccccccccccccccccccccc
Confidence 33467999999999999987654332 23333433 566555443 2211 11112 22333348999999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh---------------HHHHHHHHhHhccCceeEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP---------------EVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~---------------~~~~~~~~~~~~~~W~~~~~ 571 (595)
++.+.. + =.+..+|-|+=|+|+|||.+++.|.. .-.++++++.+.--+++...
T Consensus 136 ~l~h~~------~-~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 136 VIGHLT------D-QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp CGGGSC------H-HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred ccccch------h-hhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 887653 1 12456899999999999999986321 12567788887777776544
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=97.97 E-value=2.6e-06 Score=81.94 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=68.2
Q ss_pred cCCCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCCCchhHHhhc----cchh----hhcccCCCCCCCCCccchh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKSSTLSVIYDR----GLIG----VYHDWCEPFSTYPRTYDLI 507 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~~~l~~i~eR----Glig----~~~~wce~f~typrtyDl~ 507 (595)
+..+ ..|||+|||.|+++..|.. .+.-|.-|=+ ++..+..+-++ |+-. ...|+-+-+ .+..||+|
T Consensus 31 l~pg--~~VLDiGCG~G~~~~~la~~~~~~v~GvD~--s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v 104 (245)
T d1nkva_ 31 MKPG--TRILDLGSGSGEMLCTWARDHGITGTGIDM--SSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVA 104 (245)
T ss_dssp CCTT--CEEEEETCTTCHHHHHHHHHTCCEEEEEES--CHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEE
T ss_pred CCCC--CEEEEEcCCCCHHHHHHHHhcCCEEEEEec--ccchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEE
Confidence 5555 4799999999999998865 3666544422 22555554444 6522 233433322 24899999
Q ss_pred hccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 508 HVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 508 H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
++..++.+.. +...+|-||-|+|||||.+++.+
T Consensus 105 ~~~~~~~~~~---------d~~~~l~~~~r~LkPGG~l~i~~ 137 (245)
T d1nkva_ 105 ACVGATWIAG---------GFAGAEELLAQSLKPGGIMLIGE 137 (245)
T ss_dssp EEESCGGGTS---------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEehhhccC---------CHHHHHHHHHHHcCcCcEEEEEe
Confidence 9999987653 45779999999999999999963
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.95 E-value=4.5e-06 Score=78.31 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFS 264 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~s 264 (595)
..++.+.+++....+. +|||.|||+|.|+..+.++......+.++|+++..+..+ ....+...+..... ....
T Consensus 6 ~i~~~m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----~~~~~~~~~~~~~~-~~~~ 78 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----PWAEGILADFLLWE-PGEA 78 (223)
T ss_dssp HHHHHHHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----TTEEEEESCGGGCC-CSSC
T ss_pred HHHHHHHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----ccceeeeeehhccc-cccc
Confidence 4556677777666554 999999999999998887644455788999987654332 23455565544333 3578
Q ss_pred eeEEEEcCCCccccc---------------------------C-HHHHHHHHHhhcCCCcEEEEEcCCC
Q 007645 265 FDIVHCSRCLIPFTA---------------------------Y-NATYLIEVDRLLRPGGYLVISGPPV 305 (595)
Q Consensus 265 FDlV~~s~vL~h~~~---------------------------d-~~~~L~Ei~RvLRPGG~lvls~p~~ 305 (595)
||+|+++..+..... + ...++..+.+.|+|||++++..|..
T Consensus 79 fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 79 FDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp EEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 999999765532110 0 1255788899999999999998743
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.93 E-value=2.8e-05 Score=72.04 Aligned_cols=130 Identities=17% Similarity=0.103 Sum_probs=87.6
Q ss_pred CCeeecCCCCCcccccHHHHHHHHHhhcccc-CCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc-
Q 007645 167 GPYFTFPGGGTMFADGADKYIDKLKQYIPIT-GGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER- 244 (595)
Q Consensus 167 ~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~-~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er- 244 (595)
+....+|.+.. ..+..+...+.+.+++... .+ .+|||++||+|.++...+.+|.. .++.+|.+..+++.++++
T Consensus 10 g~~l~~~~~~~-~RPt~~~vrealFn~l~~~~~~--~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~ 84 (182)
T d2fhpa1 10 GRRLKALDGDN-TRPTTDKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENI 84 (182)
T ss_dssp TCBCCCCCCCS-SCCCCHHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHH
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHHHHHHhcCC--CEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHh
Confidence 33444444332 2233445566677776532 33 48999999999999999999864 677789999999998765
Q ss_pred ---CC--CeEEEEcccccC----CCCCCceeEEEEcCCCcccccCHHHHHHHHHh--hcCCCcEEEEEcC
Q 007645 245 ---GI--PAFVAMLGTRRL----PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDR--LLRPGGYLVISGP 303 (595)
Q Consensus 245 ---g~--~~~~~~~d~~~L----Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~R--vLRPGG~lvls~p 303 (595)
+. +..+...|+.+. .-....||+|++---. . ..+....+..+.. +|+++|.+++..+
T Consensus 85 ~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY-~-~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 85 AITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPY-A-KQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCG-G-GCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhhhcccccccccccchhhhhhhcccCCCcceEEechhh-h-hhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 33 467777775432 2245689999987532 1 1344566777654 6999999988643
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=3.7e-06 Score=84.05 Aligned_cols=108 Identities=8% Similarity=0.071 Sum_probs=74.4
Q ss_pred cCCCCeeeEEecccchhHHHhhhc-CCCeEEEEeccCCCCCchhH----HhhccchhhhcccCCCCCCCCCccchhhccC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKSSTLSV----IYDRGLIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~-~~~vwvmnv~p~~~~~~l~~----i~eRGlig~~~~wce~f~typrtyDl~H~~~ 511 (595)
++.| -.|||+|||.||++..+. ..++=|.-|.. +++|+.. +-+.||....+.-+.-+...+.+||-|=+-+
T Consensus 59 l~~G--~~VLDiGCG~G~~~~~~a~~~g~~v~git~--s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie 134 (291)
T d1kpia_ 59 LEPG--MTLLDIGCGWGSTMRHAVAEYDVNVIGLTL--SENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLG 134 (291)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEES--CHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEES
T ss_pred CCCC--CEEEEecCcchHHHHHHHHhcCcceeeccc--hHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeech
Confidence 4455 579999999999998874 44654433322 2345443 4556887666554555555568999998888
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.|.+..++......=+...++=++.|+|+|||.+++.
T Consensus 135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~ 171 (291)
T d1kpia_ 135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 171 (291)
T ss_dssp CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEE
T ss_pred hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEE
Confidence 8887753322233345678999999999999999885
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=2.1e-05 Score=77.64 Aligned_cols=116 Identities=15% Similarity=0.164 Sum_probs=74.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC--eEEEEccccc
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP--AFVAMLGTRR 257 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~--~~~~~~d~~~ 257 (595)
+..++.+.+.+.... ..++||+|||+|..+..++.. ....++++|+|+.+++.|+++ +.. ..+...+...
T Consensus 96 E~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~ 171 (271)
T d1nv8a_ 96 EELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE 171 (271)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTG
T ss_pred hhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccc
Confidence 445565555554443 348999999999999888765 345788999999999999876 443 3444554432
Q ss_pred -CCCCCCceeEEEEcCCCccccc--------CHH----------HHH-HHHHhhcCCCcEEEEEcC
Q 007645 258 -LPFPAFSFDIVHCSRCLIPFTA--------YNA----------TYL-IEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 258 -LPfpd~sFDlV~~s~vL~h~~~--------d~~----------~~L-~Ei~RvLRPGG~lvls~p 303 (595)
++...+.||+|+|+--...-.+ ++. .++ +-+.+.|+|||.+++-..
T Consensus 172 ~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 172 PFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp GGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred ccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2333478999999743221000 111 122 225678999999998653
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.90 E-value=1.1e-05 Score=79.78 Aligned_cols=115 Identities=13% Similarity=0.108 Sum_probs=80.6
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------------CCCeE
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------------GIPAF 249 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------------g~~~~ 249 (595)
.|.+.+....-......++||-+|+|.|..+..+++.... .++.+|+++..++.|++. ...+.
T Consensus 57 ~Yhe~l~~~~l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~--~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~ 134 (276)
T d1mjfa_ 57 SYHEPLVHPAMLAHPKPKRVLVIGGGDGGTVREVLQHDVD--EVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAK 134 (276)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTSCCS--EEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEE
T ss_pred HHHHHhhcchhhcCCCCceEEEecCCchHHHHHHHHhCCc--eEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCce
Confidence 4555554432223344669999999999999999887543 677889999999999863 23467
Q ss_pred EEEcccccCCCCCCceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEc
Q 007645 250 VAMLGTRRLPFPAFSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 250 ~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+...|+...--.+++||+|++-.. .+... ....+++.+.+.|+|||.+++..
T Consensus 135 i~~~Da~~~l~~~~~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 135 LTIGDGFEFIKNNRGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEESCHHHHHHHCCCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEChHHHHHhccCCCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 788775433223578999997432 22211 12478999999999999999865
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=97.89 E-value=5.4e-06 Score=78.60 Aligned_cols=98 Identities=11% Similarity=0.187 Sum_probs=76.5
Q ss_pred eeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCC-CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYP-RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typ-rtyDl~H~~~~~ 513 (595)
..|||+|||.|..+.+|.. .|- .+|+=.|-. .-|..+-++ +....++-.+..+..+| ..+|++.+..++
T Consensus 41 ~~vLDlGCGtG~~~~~l~~~~~~~~--~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l 118 (225)
T d1im8a_ 41 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL 118 (225)
T ss_dssp CEEEEESCTTCHHHHHHHHTCCCSS--CEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred CEEEEeccchhhHHHHHHHhhcCCC--CceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence 4799999999999877753 232 256666755 778877665 77888888888888888 799999998887
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+. +.=+...+|-||=|.|+|||.+|+.|
T Consensus 119 ~~~-------~~~d~~~~l~~i~~~LkpgG~li~~~ 147 (225)
T d1im8a_ 119 QFL-------PPEDRIALLTKIYEGLNPNGVLVLSE 147 (225)
T ss_dssp GGS-------CGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-------ChhhHHHHHHHHHHhCCCCceeeccc
Confidence 654 33356679999999999999999974
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=2.5e-05 Score=78.60 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=87.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----------CCCeEEEEcc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----------GIPAFVAMLG 254 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----------g~~~~~~~~d 254 (595)
.|.+.+........+..++||.||.|.|..+..+++.. ....++.+|+++..++.|++. ...+.+...|
T Consensus 62 ~Yhe~l~h~~l~~~~~pk~VLiiG~G~G~~~~~ll~~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~D 140 (312)
T d1uira_ 62 IYHETLVHPAMLTHPEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140 (312)
T ss_dssp HHHHHHHHHHHHHSSCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred HHHHHHhhhhhhhCCCcceEEEeCCCchHHHHHHHhcC-CcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEch
Confidence 34455544322223446699999999999999998773 345788899999999999865 2357788887
Q ss_pred cccC-CCCCCceeEEEEcCCCccccc-------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHc
Q 007645 255 TRRL-PFPAFSFDIVHCSRCLIPFTA-------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARAL 324 (595)
Q Consensus 255 ~~~L-Pfpd~sFDlV~~s~vL~h~~~-------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~ 324 (595)
+... .-.++.||+|++-.. .++.. ....+++.+.+.|+|||.+++......... ......+.+.+++.
T Consensus 141 a~~~l~~~~~~yDvIi~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~-~~~~~~i~~tl~~~ 216 (312)
T d1uira_ 141 ARAYLERTEERYDVVIIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTH-HRVHPVVHRTVREA 216 (312)
T ss_dssp HHHHHHHCCCCEEEEEEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC----CHHHHHHHHHHTT
T ss_pred HHHHhhhcCCcccEEEEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccch-HHHHHHHHHHHHHh
Confidence 5432 223578999996431 11110 124789999999999999998654222221 22234454544443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.88 E-value=3.5e-06 Score=80.55 Aligned_cols=114 Identities=14% Similarity=0.209 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhc--ccC
Q 007645 422 WRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYH--DWC 494 (595)
Q Consensus 422 w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~--~wc 494 (595)
+...+..+.+++.. ......+.|||+|||.|.++..|.+... +|+=+|-. +-|..+-++ |+-..++ |.
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~~~iLDiGcGtG~~~~~l~~~~~---~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~- 97 (251)
T d1wzna1 23 VKAEIDFVEEIFKE-DAKREVRRVLDLACGTGIPTLELAERGY---EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV- 97 (251)
T ss_dssp HHHHHHHHHHHHHH-TCSSCCCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG-
T ss_pred HHHHHHHHHHHHHH-hcCCCCCEEEEeCCCCCccchhhcccce---EEEEEeeccccccccccccccccccchheehhh-
Confidence 33334444443432 3444567899999999999999977653 55555544 566654444 4422222 22
Q ss_pred CCCCCCCCccchhhcc-CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 495 EPFSTYPRTYDLIHVS-GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 495 e~f~typrtyDl~H~~-~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.+ .+|.+||+|.+. +.|.+. +..+....|-++-|+|+|||.+|+.
T Consensus 98 ~~l-~~~~~fD~I~~~~~~~~~~-------~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 98 LEI-AFKNEFDAVTMFFSTIMYF-------DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp GGC-CCCSCEEEEEECSSGGGGS-------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhc-ccccccchHhhhhhhhhcC-------ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 223 356899999985 455543 2345668999999999999999984
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=97.86 E-value=2.5e-06 Score=83.30 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=77.3
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhcccCCCCCCCCCccchhhccC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~~wce~f~typrtyDl~H~~~ 511 (595)
+....-.+|||+|||.|.++..|+.+-.- +|.-+|.. ..|..+-++ +.+-.++.=-+.|+.=+.+||+|.+..
T Consensus 89 l~~~~~~~vLD~GcG~G~~t~~ll~~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~ 166 (254)
T d1xtpa_ 89 LPGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQW 166 (254)
T ss_dssp STTCCCSEEEEETCTTTHHHHHTHHHHCS--EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred CCCCCCCeEEEecccCChhhHHHHhhcCc--eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeec
Confidence 44455678999999999999987543111 22222322 444444332 222111111122222238999999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCChH----------------HHHHHHHhHhccCceeEEecc
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPE----------------VIDKVSRIANTVRWTAAVHDK 573 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~----------------~~~~~~~~~~~~~W~~~~~~~ 573 (595)
++-++. + =.+..+|-|+-|+|+|||+++|.|... -.++++++.+.--+++...+.
T Consensus 167 vl~hl~------d-~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 167 TAIYLT------D-ADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp CGGGSC------H-HHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred cccccc------h-hhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEEEe
Confidence 998764 1 135578999999999999999974320 145667776666666655433
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=97.83 E-value=4.9e-06 Score=79.11 Aligned_cols=90 Identities=21% Similarity=0.358 Sum_probs=60.4
Q ss_pred eEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchhHHhhcc---chhhhcccCCCCCCCCCccchhhccCccccccC
Q 007645 444 NIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLSVIYDRG---LIGVYHDWCEPFSTYPRTYDLIHVSGIESLIKN 518 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~~i~eRG---lig~~~~wce~f~typrtyDl~H~~~~~s~~~~ 518 (595)
+|||+|||.|.|+..|.+. .|..+... ++.+.++-+|. +-=+..+. +.+. .|.+||+|-+.++|.+..
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s----~~~i~~a~~~~~~~~~~~~~~~-~~~~-~~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEAS----EEAISHAQGRLKDGITYIHSRF-EDAQ-LPRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESC----HHHHHHHHHHSCSCEEEEESCG-GGCC-CSSCEEEEEEESCGGGCS-
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCc----HHHhhhhhcccccccccccccc-cccc-cccccccccccceeEecC-
Confidence 5999999999999999765 34433321 24555554332 11111121 1222 359999999999998654
Q ss_pred CCCCCCCCChhhhHHhh-cccccCCcEEEEe
Q 007645 519 PGSNKNSCSLVDLMVEM-DRMLRPEGTVVVR 548 (595)
Q Consensus 519 ~~~~~~~c~~~~~llEm-dRiLRP~G~~i~r 548 (595)
+...+|.|+ +|+|+|||++++.
T Consensus 96 --------d~~~~l~~i~~~~Lk~gG~l~i~ 118 (225)
T d2p7ia1 96 --------DPVALLKRINDDWLAEGGRLFLV 118 (225)
T ss_dssp --------SHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --------CHHHHHHHHHHHhcCCCceEEEE
Confidence 346788898 6999999999985
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=1.3e-05 Score=78.29 Aligned_cols=96 Identities=15% Similarity=0.221 Sum_probs=61.5
Q ss_pred eEEecccchhHHHhhhcCC-----CeEEEEeccCCCC-CchhHHhhc-----cchhhhcccCCC-C--------CCC-CC
Q 007645 444 NIMDMNAFFGGFAAALTSD-----PVWVMNVVPARKS-STLSVIYDR-----GLIGVYHDWCEP-F--------STY-PR 502 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~-----~vwvmnv~p~~~~-~~l~~i~eR-----Glig~~~~wce~-f--------~ty-pr 502 (595)
+|||+|||.|.|+..|.+. +-....++-+|-. ..|..+-+| .+-.+-.+|... + ... +.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 6999999999997776432 1112333444433 455555443 222222223211 1 122 38
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+||+|+|.+++-+.. ++...|-+|-|+|+|||+++|.
T Consensus 123 ~fD~I~~~~~l~~~~---------d~~~~l~~l~~~LkpgG~l~i~ 159 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK---------DIPATLKFFHSLLGTNAKMLII 159 (280)
T ss_dssp CEEEEEEESCGGGCS---------CHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEEccceecCC---------CHHHHHHHHHhhCCCCCEEEEE
Confidence 999999999988653 4678999999999999998875
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=6.5e-06 Score=81.95 Aligned_cols=101 Identities=11% Similarity=0.136 Sum_probs=67.9
Q ss_pred cCCCCeeeEEecccchhHHHhhh-cCCCeEEEEeccCCCCCchh----HHhhccchhhhcccCCCCCCCCCccchhhccC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAAL-TSDPVWVMNVVPARKSSTLS----VIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l-~~~~vwvmnv~p~~~~~~l~----~i~eRGlig~~~~wce~f~typrtyDl~H~~~ 511 (595)
++.| ..|||+|||.||+|-.+ ...++-|.-|.... .|+. .+.+.|+.+-..--+.-+...|-+||-|=+-.
T Consensus 60 l~~G--~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~--~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~ 135 (285)
T d1kpga_ 60 LQPG--MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSK--NQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIG 135 (285)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEES
T ss_pred CCCC--CEEEEecCcchHHHHHHHhcCCcceEEEeccH--HHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeeh
Confidence 4555 56999999999998765 33344433332222 3333 45677776655444444555578899888888
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.|.+.. .=+...++-|+.|+|+|||.+++.
T Consensus 136 ~~eh~~-------~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 136 AFEHFG-------HERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp CGGGTC-------TTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred hhhhcC-------chhHHHHHHHHHhhcCCCCcEEEE
Confidence 887652 123467899999999999999874
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=2.1e-05 Score=75.14 Aligned_cols=120 Identities=9% Similarity=0.026 Sum_probs=74.0
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc------------------cchhhhcc----------
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR------------------GLIGVYHD---------- 492 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR------------------Glig~~~~---------- 492 (595)
=..|||+|||.|.++..+.+.... +|+=.|-. +.|..+-++ ++-|.+..
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~~~~--~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACDSFQ--DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA 129 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEE--EEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhccccC--cEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence 467999999999998777665543 45555433 555544332 01111110
Q ss_pred -----------cCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh---------
Q 007645 493 -----------WCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP--------- 551 (595)
Q Consensus 493 -----------wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~--------- 551 (595)
.......+| .+||+|-+..++.+.. ..+-....++-+|-|+|||||++|+.+-.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~-----~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~ 204 (257)
T d2a14a1 130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECAC-----CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGK 204 (257)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETT
T ss_pred hhhcccccccccccccccccCCcccEEeehhhHHHhc-----ccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecc
Confidence 011112344 7999999888887652 12224456889999999999999996311
Q ss_pred -------HHHHHHHHhHhccCcee
Q 007645 552 -------EVIDKVSRIANTVRWTA 568 (595)
Q Consensus 552 -------~~~~~~~~~~~~~~W~~ 568 (595)
-..+.++++++.--+++
T Consensus 205 ~~~~~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 205 REFSCVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEE
T ss_pred ccccccCCCHHHHHHHHHHCCCEE
Confidence 12567777777666654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=7.4e-06 Score=80.32 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=57.8
Q ss_pred CCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCC-CchhHHhhccc-hhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKS-STLSVIYDRGL-IGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~-~~l~~i~eRGl-ig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
.+-..|||+|||.|.|+.+|.+. .+-+ +-.|-. ..|..+-+|+- +.....=.+.++.-..+||+|.+.....
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~---~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~- 158 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITT---FGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC- 158 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEE---EEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC-
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEE---EEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHH-
Confidence 34568999999999999998654 3332 333433 66777766652 1111111123332238999998654332
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-+-||.|+|||||.+++.
T Consensus 159 ---------------~~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 159 ---------------KAEELARVVKPGGWVITA 176 (268)
T ss_dssp ---------------CHHHHHHHEEEEEEEEEE
T ss_pred ---------------HHHHHHHHhCCCcEEEEE
Confidence 256999999999999996
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=97.76 E-value=7.4e-06 Score=80.82 Aligned_cols=96 Identities=10% Similarity=0.071 Sum_probs=62.8
Q ss_pred CCeeeEEecccchhHHHhhhcCC---CeEEEEeccCCCC-CchhHHhhc----cchhh--hcccCCCCCCCCCccchhhc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKS-STLSVIYDR----GLIGV--YHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~-~~l~~i~eR----Glig~--~~~wce~f~typrtyDl~H~ 509 (595)
.+=+.|||+|||.|.++..|.+. ..-| +-.|-. +.|..+-++ |+--. ..|. +.++ ++.+||+|++
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v---~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~-~~~~-~~~~fD~v~~ 100 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKY---TGIDSGETLLAEARELFRLLPYDSEFLEGDA-TEIE-LNDKYDIAIC 100 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEE---EEEECCHHHHHHHHHHHHSSSSEEEEEESCT-TTCC-CSSCEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEE---EEEecchhHhhhhhccccccccccccccccc-cccc-ccCCceEEEE
Confidence 44578999999999998877542 2222 223432 444443322 32111 1232 2232 4688999999
Q ss_pred cCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 510 SGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 510 ~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
..++.+.. +...+|-||-|+|+|||++++.|
T Consensus 101 ~~~l~~~~---------d~~~~l~~~~~~LkpgG~lii~~ 131 (281)
T d2gh1a1 101 HAFLLHMT---------TPETMLQKMIHSVKKGGKIICFE 131 (281)
T ss_dssp ESCGGGCS---------SHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ehhhhcCC---------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99998653 35679999999999999999865
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=97.76 E-value=4.6e-06 Score=80.96 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=68.7
Q ss_pred ccCCCCeeeEEecccchhHHHhhhcCC--CeEEEEeccCCCCCchh----HHhhccchhhhccc-CCCCCCCCCccchhh
Q 007645 436 KLGTPAIRNIMDMNAFFGGFAAALTSD--PVWVMNVVPARKSSTLS----VIYDRGLIGVYHDW-CEPFSTYPRTYDLIH 508 (595)
Q Consensus 436 ~~~~~~~RnvmDm~~~~g~faa~l~~~--~vwvmnv~p~~~~~~l~----~i~eRGlig~~~~w-ce~f~typrtyDl~H 508 (595)
.+.....+.|||+|||.|.++.+|... .+-+.- .|-+..+. .+-+.|+..-+.-- ...|...|..||+|.
T Consensus 75 ~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~---~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~ 151 (253)
T d1tw3a2 75 AYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATV---LEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAII 151 (253)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEE---EECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEE
T ss_pred hcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEE---ccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhhee
Confidence 345677899999999999999999643 332221 12223333 34455654332211 123455678899999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+..++-+|. + -....+|-|+=|.|+|||.++|.|
T Consensus 152 ~~~vlh~~~------d-~~~~~~L~~~~~~LkPGG~l~i~e 185 (253)
T d1tw3a2 152 LSFVLLNWP------D-HDAVRILTRCAEALEPGGRILIHE 185 (253)
T ss_dssp EESCGGGSC------H-HHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eccccccCC------c-hhhHHHHHHHHHhcCCCcEEEEEe
Confidence 999987763 1 223468999999999999999864
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=97.74 E-value=5.2e-06 Score=80.30 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=69.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----ch-hh---hcccCCCCCCC-CCccchhhccCc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LI-GV---YHDWCEPFSTY-PRTYDLIHVSGI 512 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----li-g~---~~~wce~f~ty-prtyDl~H~~~~ 512 (595)
.+|||+|||.|+++..+.+...- +|+=.|-. ..|..+-+|- .. .+ ..| +...+.- ..+||+|-+...
T Consensus 26 ~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D-~~~~~~~~~~~fD~V~~~~~ 102 (252)
T d1ri5a_ 26 DSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD-SYGRHMDLGKEFDVISSQFS 102 (252)
T ss_dssp CEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESC-TTTSCCCCSSCEEEEEEESC
T ss_pred CEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcc-hhhhcccccccceEEEEcce
Confidence 57999999999999888765542 34555544 7777777663 11 01 111 1111222 269999998877
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe--CChHHHHHHH
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR--DSPEVIDKVS 558 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r--d~~~~~~~~~ 558 (595)
+-++. .+.-.+..+|-||.|+|+|||++|+. |...++..+.
T Consensus 103 l~~~~-----~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~ 145 (252)
T d1ri5a_ 103 FHYAF-----STSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYK 145 (252)
T ss_dssp GGGGG-----SSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHH
T ss_pred eeecC-----CCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHH
Confidence 66542 12224557899999999999999985 4444444443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.71 E-value=3.2e-05 Score=74.32 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC--CeEEEEcccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI--PAFVAMLGTR 256 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~--~~~~~~~d~~ 256 (595)
...++..+..... .++|||||+++|..+..|++.-.....++.+|.++...+.|++. |. .+.+..+++.
T Consensus 47 ~g~~L~~L~~~~~-----~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~ 121 (227)
T d1susa1 47 EGQFLSMLLKLIN-----AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL 121 (227)
T ss_dssp HHHHHHHHHHHHT-----CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHhcC-----CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHH
Confidence 4556666666543 34899999999999999987632334777889999888888765 44 3666666642
Q ss_pred -cCC------CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 257 -RLP------FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 257 -~LP------fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.++ ...++||+|+.- +.......++..+.+.|+|||.+++-.
T Consensus 122 ~~L~~l~~~~~~~~~fD~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 122 PVLDEMIKDEKNHGSYDFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp HHHHHHHHCGGGTTCBSEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred HHHHHHHhccccCCceeEEEec----cchhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 222 135689999975 334456688999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.67 E-value=2.8e-06 Score=84.01 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=70.8
Q ss_pred HHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchhhhcccCC---CC--
Q 007645 428 YYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIGVYHDWCE---PF-- 497 (595)
Q Consensus 428 ~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~~wce---~f-- 497 (595)
.|.+.+...++....++|||+|||.|.++..|.+... +|+-.|-. +-|..+-+ ++.-..++.+.- .|
T Consensus 43 ~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~---~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 43 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC---eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence 3444333334334457899999999999999988752 56666655 66665543 333322221110 01
Q ss_pred ---C-CCCCccchhhccC-ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 498 ---S-TYPRTYDLIHVSG-IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 498 ---~-typrtyDl~H~~~-~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. .+..+||+|-|.+ +|.+..+ .....-....+|-||-|+|+|||.+|+.
T Consensus 120 ~~~~~~~~~~fd~v~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 120 LDKDVPAGDGFDAVICLGNSFAHLPD--SKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp HHHHSCCTTCEEEEEECSSCGGGSCC--TTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccCCCCCceEEEEecCchhhcCC--cccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 0 1237899998754 5665431 0111123456999999999999999994
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.67 E-value=8.1e-06 Score=75.87 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=64.9
Q ss_pred eEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHH----hhccchh---hhcccCCCCCCCCCccchhhccCcccc
Q 007645 444 NIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVI----YDRGLIG---VYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 444 nvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i----~eRGlig---~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
.|||+|||.|.++.+|.++.. .|+-.|-. ..|..+ -+.|+-. ...|.++. .++.+||+|.|..+|-+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGY---DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL--TFDGEYDFILSTVVMMF 107 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC--CCCCCEEEEEEESCGGG
T ss_pred cEEEECCCCCHHHHHHHHHhh---hhccccCcHHHHHHHHHHhhhccccchhhhheecccc--cccccccEEEEeeeeec
Confidence 599999999999999988753 33334433 445433 3445432 22333332 24689999999999876
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
. ..=....+|-++-|.|+|||++++.
T Consensus 108 ~-------~~~~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 108 L-------EAQTIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp S-------CTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred C-------CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5 3335668999999999999999985
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.65 E-value=9e-05 Score=71.46 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=66.2
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.|.+.+....++ +|||||||+|.++..|++.+. .++++|+++.+++..+++. .++.+..+|+..+++
T Consensus 7 ~~i~~~iv~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~ 81 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF 81 (235)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc
Confidence 35667788877766555 999999999999999998853 6788899999999988874 357889999888877
Q ss_pred CCCceeEEEEcC
Q 007645 261 PAFSFDIVHCSR 272 (595)
Q Consensus 261 pd~sFDlV~~s~ 272 (595)
+......|+++-
T Consensus 82 ~~~~~~~vv~NL 93 (235)
T d1qama_ 82 PKNQSYKIFGNI 93 (235)
T ss_dssp CSSCCCEEEEEC
T ss_pred cccccceeeeee
Confidence 765555666664
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=0.00026 Score=70.26 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=83.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGT 255 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~ 255 (595)
.|-+.+...........++||=||-|.|..+..+++.. ....++.+|+++..++.|++- ...+.+...|.
T Consensus 65 ~Yhe~l~h~~~~~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da 143 (290)
T d1xj5a_ 65 AYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG 143 (290)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH
T ss_pred HHHHHHhhHHHhhCCCCcceEEecCCchHHHHHHHhcc-cceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccH
Confidence 34444544333333456799999999999999999873 234778889999999999874 34577777774
Q ss_pred ccC--CCCCCceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 256 RRL--PFPAFSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 256 ~~L--Pfpd~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
... ..++++||+|+.-. ...... ....+++.+.+.|+|||.+++....
T Consensus 144 ~~~l~~~~~~~yDvIi~D~-~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 197 (290)
T d1xj5a_ 144 VAFLKNAAEGSYDAVIVDS-SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 197 (290)
T ss_dssp HHHHHTSCTTCEEEEEECC-CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHhhccccCccEEEEcC-CCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 332 23457899999742 212111 1247899999999999999998753
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.63 E-value=2.2e-05 Score=72.92 Aligned_cols=123 Identities=13% Similarity=0.125 Sum_probs=71.3
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh--hhcccCCCCCCC-CCccchhh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG--VYHDWCEPFSTY-PRTYDLIH 508 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig--~~~~wce~f~ty-prtyDl~H 508 (595)
+....-.+|+|+|||.|.++.+|.+.- . +|.-.|-. ..+..+-++ |+-. +-.-++..|... +.+||+|-
T Consensus 48 l~~~~~~~VLDiGcG~G~~~~~la~~~-~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii 124 (194)
T d1dusa_ 48 VVVDKDDDILDLGCGYGVIGIALADEV-K--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKII 124 (194)
T ss_dssp CCCCTTCEEEEETCTTSHHHHHHGGGS-S--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEE
T ss_pred CCcCCCCeEEEEeecCChhHHHHHhhc-c--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEE
Confidence 444456789999999999998886542 1 44444543 555544332 3322 111222333322 48999999
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-ChHHHHHHHHhHhccCceeEE
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-SPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-~~~~~~~~~~~~~~~~W~~~~ 570 (595)
++..|... .=.++.++-++.|+|+|||.+++.- ....-+.+.+.++..-+++..
T Consensus 125 ~~~p~~~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~f~~~~~ 179 (194)
T d1dusa_ 125 TNPPIRAG--------KEVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDVFGNVET 179 (194)
T ss_dssp ECCCSTTC--------HHHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHHHSCCEE
T ss_pred EcccEEec--------chhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHHhCCcEEE
Confidence 88776421 1124568889999999999876632 222233444444444444433
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.57 E-value=1.1e-05 Score=77.09 Aligned_cols=100 Identities=13% Similarity=0.127 Sum_probs=63.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc------chhhhcccCCCCCCCC-CccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG------LIGVYHDWCEPFSTYP-RTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG------lig~~~~wce~f~typ-rtyDl~H~~~~~s 514 (595)
.+|||+|||.|.+|.+|.+... -+|+-.+-. ..+..+-++. +....+++..-...+| .+||+|-.+...+
T Consensus 55 ~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~ 132 (229)
T d1zx0a1 55 GRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL 132 (229)
T ss_dssp EEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred CeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence 5799999999999999987654 244445443 5666655443 2223344443334455 6777775443333
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.+. ..+.-..+.++-|+=|+|||||.+++-
T Consensus 133 ~~~----~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 133 SEE----TWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp BGG----GTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccc----cccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 221 113334557899999999999999984
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.56 E-value=0.00013 Score=72.63 Aligned_cols=118 Identities=12% Similarity=0.068 Sum_probs=80.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGT 255 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~ 255 (595)
.|-+.+....-...+..++||-||.|.|..+..+++.. ....++.+|+++..++.|++. ...+.+...|+
T Consensus 74 ~YhE~l~h~pl~~~~~pk~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da 152 (295)
T d1inla_ 74 MYHEMLAHVPMFLHPNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG 152 (295)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred hhhhhhcchhHhhCCCCceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH
Confidence 34444443322223446699999999999999999873 234778889999999999864 24567777775
Q ss_pred cc-CCCCCCceeEEEEcCCCcccc-c----CHHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 256 RR-LPFPAFSFDIVHCSRCLIPFT-A----YNATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 256 ~~-LPfpd~sFDlV~~s~vL~h~~-~----d~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
.. +.-.++.||+|++-..- +.. . ....+++.+.+.|+|||.++.....
T Consensus 153 ~~~l~~~~~~yDvIi~D~~d-p~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 153 AEYVRKFKNEFDVIIIDSTD-PTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp HHHGGGCSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred HHHHhcCCCCCCEEEEcCCC-CCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 33 22345789999974321 211 0 1258899999999999999997653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00016 Score=71.59 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=79.9
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGT 255 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~ 255 (595)
.|.+.+....-......++||-||.|.|..+..+++.. ....++.+|++++.++.|++. ..++.+...|+
T Consensus 63 ~Yhe~l~h~~l~~~~~pk~vLiiGgG~G~~~~~~l~~~-~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da 141 (285)
T d2o07a1 63 SYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG 141 (285)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred HHHHHhccHhhhhCcCcCeEEEeCCCchHHHHHHHHcC-CcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccH
Confidence 34444443322233345699999999999999999873 234778889999999999865 24678888775
Q ss_pred ccC-CCCCCceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 256 RRL-PFPAFSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 256 ~~L-Pfpd~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
... .-..++||+|++-. ...... ....+++.+.+.|+|||.+++...
T Consensus 142 ~~~l~~~~~~yDvIi~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 142 FEFMKQNQDAFDVIITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp HHHHHTCSSCEEEEEEEC-C-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHhcCCCCCCEEEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 332 22457899999753 222211 112679999999999999999764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.48 E-value=0.00015 Score=72.68 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=78.8
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---------CCeEEEEccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---------IPAFVAMLGT 255 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---------~~~~~~~~d~ 255 (595)
.|-+.+....-...+..++||-||.|.|..+..+++.. .+..++.+|+++..++.|++.. ..+.+...|+
T Consensus 91 ~YhE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk~~-~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da 169 (312)
T d2b2ca1 91 SYQEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG 169 (312)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH
T ss_pred HHHHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHHcC-CcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH
Confidence 34444443322223446699999999999999999873 2347888999999999998752 3466777664
Q ss_pred ccC-CCCCCceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 256 RRL-PFPAFSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 256 ~~L-Pfpd~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
... .-.+++||+|++-..- .... ....+++.+.+.|+|||.++....
T Consensus 170 ~~~l~~~~~~yDvII~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 170 FEFLKNHKNEFDVIITDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp HHHHHHCTTCEEEEEECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred HHHHHhCCCCCCEEEEcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 332 2245789999975322 2110 124779999999999999999865
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.43 E-value=0.0003 Score=69.18 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=81.2
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc---------CCCeEEEEccc
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER---------GIPAFVAMLGT 255 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er---------g~~~~~~~~d~ 255 (595)
.|.+.+....-......++||-||.|.|..+..+++.. ....++.+|++++.++.|++. ..++.+...|+
T Consensus 60 ~Yhe~l~h~~l~~~~~p~~vLiiGgG~G~~~~~~l~~~-~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~ 138 (274)
T d1iy9a_ 60 VYHEMVAHVPLFTHPNPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG 138 (274)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred hchhhhccchhhccCCcceEEecCCCCcHHHHHHHhcC-CcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH
Confidence 34444433322223345699999999999999999862 234777889999999999865 23577777775
Q ss_pred cc-CCCCCCceeEEEEcCCCccccc----CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 256 RR-LPFPAFSFDIVHCSRCLIPFTA----YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 256 ~~-LPfpd~sFDlV~~s~vL~h~~~----d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.. +--.+++||+|+.-.. .+... ....+++.+.+.|+|||.++....
T Consensus 139 ~~~l~~~~~~yDvIi~D~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 139 FMHIAKSENQYDVIMVDST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp HHHHHTCCSCEEEEEESCS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred HHHHhhcCCCCCEEEEcCC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 43 2234578999997432 12110 135789999999999999998765
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=97.43 E-value=1.3e-05 Score=78.17 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=68.5
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchhHHhhccchhhhcccC-CCCCCCCCccchhhccC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWC-EPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wc-e~f~typrtyDl~H~~~ 511 (595)
+....++.|||+|||.|.++.+|.+. .+-++.+ |......-..+-+.|+-.-..-.. ..|..-|-.||++.+..
T Consensus 77 ~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~ 155 (256)
T d1qzza2 77 YDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 155 (256)
T ss_dssp SCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred CCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence 45577899999999999999999654 2333332 211111122344556543222111 23444567899999999
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS 550 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~ 550 (595)
++-+|. .-....+|=++=|.|+|||.++|-|.
T Consensus 156 vLh~~~-------d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 156 VLLNWS-------DEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CGGGSC-------HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccC-------cHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 987763 12234588999999999999998754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.43 E-value=0.00049 Score=63.27 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=75.0
Q ss_pred HHHHHHHhhccc-cCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC---CeEEEEcccc
Q 007645 185 KYIDKLKQYIPI-TGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI---PAFVAMLGTR 256 (595)
Q Consensus 185 ~yi~~L~~~l~~-~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~---~~~~~~~d~~ 256 (595)
...+.+.+.+.. ..+. +|||+-||+|+++.+.+++|.. .++-+|.+...++..+++ +. ...+...+..
T Consensus 29 ~vrealFn~l~~~~~~~--~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~ 104 (183)
T d2ifta1 29 RVKETLFNWLMPYIHQS--ECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL 104 (183)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred HHHHHHHHHhhhhcccc--eEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhccccccccccccccc
Confidence 344555555542 2333 8999999999999999999875 566689999998877765 32 2344444422
Q ss_pred ---cCCCCCCceeEEEEcCCCcccccCHHHHHHHHH--hhcCCCcEEEEEcC
Q 007645 257 ---RLPFPAFSFDIVHCSRCLIPFTAYNATYLIEVD--RLLRPGGYLVISGP 303 (595)
Q Consensus 257 ---~LPfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~--RvLRPGG~lvls~p 303 (595)
........||+|++---... ......+..+. .+|+++|.+++..+
T Consensus 105 ~~l~~~~~~~~fDlIFlDPPY~~--~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 105 DFLKQPQNQPHFDVVFLDPPFHF--NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHTTSCCSSCCEEEEEECCCSSS--CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccccCCcccEEEechhHhh--hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 22334567999998754321 12345566554 47999999998654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.41 E-value=3.9e-05 Score=74.57 Aligned_cols=88 Identities=8% Similarity=0.101 Sum_probs=68.7
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCCC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPFP 261 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPfp 261 (595)
..++.|.+.+....++ +|||||||+|.++..|++.+. .+.++|+++.+++.++++. .++.+..+|+.+++++
T Consensus 16 ~ii~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~---~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~ 90 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP 90 (245)
T ss_dssp TTHHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcC---ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccc
Confidence 3456677777665544 899999999999999999854 6788899999888877663 3577888888888888
Q ss_pred CCceeEEEEcCCCcccc
Q 007645 262 AFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~ 278 (595)
...++.|+++.-. |..
T Consensus 91 ~~~~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 91 NKQRYKIVGNIPY-HLS 106 (245)
T ss_dssp CSSEEEEEEECCS-SSC
T ss_pred cceeeeEeeeeeh-hhh
Confidence 8888888887654 443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=97.38 E-value=4.2e-05 Score=73.04 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=65.0
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchhhhc--ccCCCCCCCCCccchhhcc-Cccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIGVYH--DWCEPFSTYPRTYDLIHVS-GIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig~~~--~wce~f~typrtyDl~H~~-~~~s 514 (595)
++|||+|||.|.++-.|.+... +|+=.|-. +.|.++-+| |+--.++ |..+ |+ .+++||+|=|. +.|.
T Consensus 39 ~~vLDiGCG~G~~~~~l~~~g~---~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 39 DDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN-LN-INRKFDLITCCLDSTN 113 (246)
T ss_dssp TEEEEETCTTSTTHHHHGGGSS---EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG-CC-CSCCEEEEEECTTGGG
T ss_pred CeEEEEeCcCCHHHHHHHHhCC---ccEeeccchhhhhhccccccccCccceeeccchhh-hc-ccccccccceeeeeee
Confidence 5799999999999999988754 45566655 777777665 4321111 2221 22 25899988653 4455
Q ss_pred cccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 515 LIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 515 ~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+.. +.-....+|-+|-|.|+|||.+|+.
T Consensus 114 ~~~------~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 114 YII------DSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp GCC------SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccC------CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 443 3345667899999999999999973
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.35 E-value=0.00034 Score=70.05 Aligned_cols=132 Identities=15% Similarity=0.077 Sum_probs=86.5
Q ss_pred hccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCCCCceeE
Q 007645 193 YIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFPAFSFDI 267 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfpd~sFDl 267 (595)
.+....|. +|||+.||.|.=+..+++.......+.+.|.++..++...++ +.. +.....|...++..+..||.
T Consensus 111 ~l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 111 ALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred cccCCccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccE
Confidence 33444544 899999999987777766533334677889999888766543 543 45555566666666788999
Q ss_pred EEE------cCCCcc-----c--c-cC-------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 268 VHC------SRCLIP-----F--T-AY-------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 268 V~~------s~vL~h-----~--~-~d-------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
|++ ..++.. | . ++ ...+|..+.+.|||||+++.++-...-.++ ...++.++++..+
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eEN---E~VV~~~L~~~~~ 265 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEEN---EFVIQWALDNFDV 265 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGT---HHHHHHHHHHSSE
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhH---HHHHHHHHhcCCC
Confidence 997 111111 1 0 01 126688899999999999999875444333 3456677777666
Q ss_pred EEE
Q 007645 327 ELI 329 (595)
Q Consensus 327 ~~v 329 (595)
+++
T Consensus 266 ~~~ 268 (313)
T d1ixka_ 266 ELL 268 (313)
T ss_dssp EEE
T ss_pred EEe
Confidence 655
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.35 E-value=0.00069 Score=62.56 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=91.1
Q ss_pred HHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC-CeEEEEcccccCC-----C
Q 007645 187 IDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI-PAFVAMLGTRRLP-----F 260 (595)
Q Consensus 187 i~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~-~~~~~~~d~~~LP-----f 260 (595)
++++.+.+....+. +++|..+|.|..+..+++++. .+.++|.++.+++.|+++.. ...+.......+. +
T Consensus 7 l~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~---~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 7 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGG---RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccC---cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 44555666555555 899999999999999999853 67899999999999987633 3566665433321 3
Q ss_pred CCCceeEEEEcCCCcccc-c-------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEe
Q 007645 261 PAFSFDIVHCSRCLIPFT-A-------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAV 331 (595)
Q Consensus 261 pd~sFDlV~~s~vL~h~~-~-------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~ 331 (595)
..+.+|.|+.-..+.... + .....|.....+|+|||.+++.+- . ...-..+.+.+++..++.+.+
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f----h--s~Ed~ivk~~~~e~~~k~i~k 154 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF----H--SLEDRVVKRFLRESGLKVLTK 154 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC----S--HHHHHHHHHHHHHHCSEESCS
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec----c--cchhHHHHHHHhhccceeccC
Confidence 346799999755443221 1 123568888999999999999862 2 122234666777666665543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=7.5e-05 Score=74.30 Aligned_cols=118 Identities=13% Similarity=0.071 Sum_probs=67.2
Q ss_pred HHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCC-eEEEEeccCCCC-CchhHHhhccchh---hhcccCCCCC
Q 007645 424 RRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDP-VWVMNVVPARKS-STLSVIYDRGLIG---VYHDWCEPFS 498 (595)
Q Consensus 424 ~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~-vwvmnv~p~~~~-~~l~~i~eRGlig---~~~~wce~f~ 498 (595)
.|.+.|.+.+......-+=.+|||+|||.|.++..+.... --|..+=....- .....+-+.|+.. +.+.-.+.+.
T Consensus 18 ~r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~ 97 (311)
T d2fyta1 18 IRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH 97 (311)
T ss_dssp HHHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc
Confidence 3445566554322221112469999999999877665432 222222111111 2234555666533 2332233333
Q ss_pred CCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 499 TYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 499 typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.-+..||+|=+.-+++... ..-.++.++-.++|.|+|||.+|-
T Consensus 98 ~~~~~~D~Ivse~~~~~~~------~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLL------FESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CSCSCEEEEEECCCBTTBT------TTCHHHHHHHHHHHHEEEEEEEES
T ss_pred CccccceEEEEeeeeeecc------cccccHHHHHHHHhcCCCCcEEec
Confidence 3348999998766655432 334566788889999999999984
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.0011 Score=62.52 Aligned_cols=93 Identities=16% Similarity=0.095 Sum_probs=68.6
Q ss_pred eEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHH----cCC-CeEEEEcccccCCCCCCceeEEEEcCCCccc
Q 007645 203 TALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALE----RGI-PAFVAMLGTRRLPFPAFSFDIVHCSRCLIPF 277 (595)
Q Consensus 203 ~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~e----rg~-~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~ 277 (595)
+++|+|+|.|.=|.-|+-.. +...++.+|.+..-+.+.++ -++ ++.+....++.+. .+.+||+|+|.. +
T Consensus 68 ~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA-~--- 141 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F--- 141 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S---
T ss_pred ceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhh-h---
Confidence 89999999996666555432 23578888999887776553 366 5777777777764 356899988754 4
Q ss_pred ccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 278 TAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 278 ~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.....++.-+.+.+++||.+++.-
T Consensus 142 -~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 -ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 256778888999999999999864
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0018 Score=65.00 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CC-CeEEEEccccc
Q 007645 183 ADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GI-PAFVAMLGTRR 257 (595)
Q Consensus 183 a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~-~~~~~~~d~~~ 257 (595)
+..+++.+.+.+....++ +|||+-||+|.|+..|++.. ..+.++|.++.+++.|+++ ++ ++.+..++.+.
T Consensus 197 ~e~l~~~v~~~~~~~~~~--~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 197 NQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhHHHHHHHHhhccCCCc--eEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh
Confidence 344456666666554444 89999999999999999874 3788889999999988765 54 46777776543
Q ss_pred C----CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEeec
Q 007645 258 L----PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVDG 333 (595)
Q Consensus 258 L----Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~ 333 (595)
. +.....||+|+..--... ....+..+.+. +|.-.+++|-.|..+ =..+..+. +.+|++..-
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G----~~~~~~~l~~~-~~~~ivYVSCnp~Tl------aRDl~~l~-~~gy~l~~i-- 337 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAG----AAGVMQQIIKL-EPIRIVYVSCNPATL------ARDSEALL-KAGYTIARL-- 337 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTC----CHHHHHHHHHH-CCSEEEEEESCHHHH------HHHHHHHH-HTTCEEEEE--
T ss_pred hhhhhhhhhccCceEEeCCCCcc----HHHHHHHHHHc-CCCEEEEEeCCHHHH------HHHHHHHH-HCCCeEeEE--
Confidence 2 233567999987644322 13456666654 788788887532110 11233333 457877654
Q ss_pred ceeEeeccCC
Q 007645 334 NTVIWKKPVG 343 (595)
Q Consensus 334 ~~~iw~K~~~ 343 (595)
.++...|-.
T Consensus 338 -~~~D~FP~T 346 (358)
T d1uwva2 338 -AMLDMFPHT 346 (358)
T ss_dssp -EEECCSTTS
T ss_pred -EEEecCCCC
Confidence 344444444
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00052 Score=63.28 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=66.7
Q ss_pred HHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------
Q 007645 188 DKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP-------- 259 (595)
Q Consensus 188 ~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP-------- 259 (595)
.+|.+..... ....+|||+||+.|+|+.++.+.......+.++|+.+- +.-....+...+.....
T Consensus 11 ~EI~~k~~l~-k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~------~~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 11 DEIQQSDKLF-KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM------DPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHHHCCC-CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC------CCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHhCcc-CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc------cccCCceEeecccccchhhhhhhhh
Confidence 3455544432 22448999999999999998876322235666675431 12234566666543321
Q ss_pred CCCCceeEEEEcCCCcccccCH-----------HHHHHHHHhhcCCCcEEEEEc
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYN-----------ATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~-----------~~~L~Ei~RvLRPGG~lvls~ 302 (595)
...+.||+|+|-.+. ....+. ...+.-+.++||+||.|++-.
T Consensus 84 ~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~ 136 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence 235679999997654 222111 145666788999999999975
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.08 E-value=0.00014 Score=72.53 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=65.8
Q ss_pred HHHHHHHHhhh--ccCCCCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHhhccchhhhccc---CC
Q 007645 425 RVAYYKNTLNV--KLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIYDRGLIGVYHDW---CE 495 (595)
Q Consensus 425 ~v~~y~~~l~~--~~~~~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~w---ce 495 (595)
|...|.+.+.. .+..+ ++|||+|||.|.++-.+.+ +.|..+- +.... .....+-..|+.....-. -+
T Consensus 17 R~~~y~~ai~~~~~~~~~--~~VLDiGcG~G~ls~~aa~~Ga~~V~avd--~s~~~~~a~~~~~~n~~~~~v~~~~~~~~ 92 (316)
T d1oria_ 17 RTLTYRNSMFHNRHLFKD--KVVLDVGSGTGILCMFAAKAGARKVIGIE--CSSISDYAVKIVKANKLDHVVTIIKGKVE 92 (316)
T ss_dssp HHHHHHHHHHTCHHHHTT--CEEEEETCTTSHHHHHHHHTTCSEEEEEE--CSTTHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHHhccccCCc--CEEEEEecCCcHHHHHHHHhCCCEEEEEc--CcHHHhhhhhHHHHhCCccccceEeccHH
Confidence 34556654421 12234 4699999999987654443 3343332 21111 223445555764433222 22
Q ss_pred CCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 496 PFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 496 ~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.+..-+..+|+|-+.-+..... +.-.++.++-+++|+|+|||.+|-
T Consensus 93 ~~~~~~~~~D~ivs~~~~~~l~------~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 93 EVELPVEKVDIIISEWMGYCLF------YESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TCCCSSSCEEEEEECCCBBTBT------BTCCHHHHHHHHHHHEEEEEEEES
T ss_pred HcccccceeEEEeeeeeeeeec------cHHHHHHHHHHHHhcCCCCeEEEe
Confidence 2333337999998765554332 445678899999999999999983
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=9.2e-05 Score=71.98 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=64.8
Q ss_pred eeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc--cchhhh----------------------------
Q 007645 442 IRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--GLIGVY---------------------------- 490 (595)
Q Consensus 442 ~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Glig~~---------------------------- 490 (595)
=+.|||+|||.|-+...+..+. ..+|+-.|-. +.+..+-.+ .-.+.+
T Consensus 55 g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T d2g72a1 55 GRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 132 (263)
T ss_dssp CSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence 3589999999998866554443 3467777655 666654321 001111
Q ss_pred -------cccC--CCC---CCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 491 -------HDWC--EPF---STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 491 -------~~wc--e~f---~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+|-. ..+ ...+..||+|-+..+++... .++.++...|-++-|+|||||++|+.
T Consensus 133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~-----~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVS-----PDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHC-----SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHc-----cCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0111 111 22346899999888887664 34556788999999999999999996
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.07 E-value=0.00017 Score=68.10 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=75.5
Q ss_pred cCCCCeeeEEecccchhHHHhhhcC--C--CeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCCCccchhhccCc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTS--D--PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGI 512 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~--~--~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~ 512 (595)
++.| -.|||+|||.|+++.+|.+ . .|.-+-+.|.--..-...+-.|+.+-..+-=.+....|+..+|.+ +-+
T Consensus 54 lkpg--~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v--d~v 129 (209)
T d1nt2a_ 54 LRGD--ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV--DLI 129 (209)
T ss_dssp CCSS--CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE--EEE
T ss_pred CCCC--CEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceE--EEE
Confidence 4444 3899999999998888754 1 244433322211111123344554433332233334455555543 233
Q ss_pred cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC----------hHHHHHHHHh-HhccCceeEEeccCCCCCCCc
Q 007645 513 ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS----------PEVIDKVSRI-ANTVRWTAAVHDKEPGSNGRE 581 (595)
Q Consensus 513 ~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~----------~~~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~ 581 (595)
|.... +.-....+|.|+.|+|+|||++++-+. ..+.+.+.+. ..++... ...+.+ |..++
T Consensus 130 ~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~-E~i~L~--P~~~~ 200 (209)
T d1nt2a_ 130 YQDIA------QKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIV-KHGSLM--PYHRD 200 (209)
T ss_dssp EECCC------STTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEE-EEEECT--TTCTT
T ss_pred Eeccc------ChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEE-EEEccC--CCccC
Confidence 43322 334566789999999999999998632 2334443333 3333332 122333 55567
Q ss_pred eEEEEEecc
Q 007645 582 KILVATKSL 590 (595)
Q Consensus 582 ~~l~~~K~~ 590 (595)
-.+|.-+.|
T Consensus 201 H~~v~~~r~ 209 (209)
T d1nt2a_ 201 HIFIHAYRF 209 (209)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEEeC
Confidence 788876654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=97.07 E-value=0.00012 Score=71.22 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=70.0
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchhhhc--ccCCCCCCCC-Cccchhh
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIGVYH--DWCEPFSTYP-RTYDLIH 508 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig~~~--~wce~f~typ-rtyDl~H 508 (595)
+..+ ..|||+|||.|.++.++....- .|+-.|-. .-+..+-+ .|+-..+. |.-+ ..| .+||+|.
T Consensus 118 ~~~g--~~VLDiGcGsG~l~i~aa~~g~---~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~---~~~~~~fD~V~ 189 (254)
T d2nxca1 118 LRPG--DKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLV 189 (254)
T ss_dssp CCTT--CEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEE
T ss_pred cCcc--CEEEEcccchhHHHHHHHhcCC---EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc---cccccccchhh
Confidence 4444 4799999999999888765442 23333432 44444332 34321111 1111 233 6899998
Q ss_pred ccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCceeEEe
Q 007645 509 VSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAAVH 571 (595)
Q Consensus 509 ~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~~~~~ 571 (595)
|+-+... +..++=++-|+|+|||.+|+++- .+-.+.+.+.....-|+....
T Consensus 190 ani~~~~------------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~ 241 (254)
T d2nxca1 190 ANLYAEL------------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEE 241 (254)
T ss_dssp EECCHHH------------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEE
T ss_pred hcccccc------------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEE
Confidence 7644332 34577789999999999998742 122456677777777776554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.07 E-value=0.00014 Score=69.69 Aligned_cols=132 Identities=13% Similarity=0.110 Sum_probs=76.6
Q ss_pred eeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchhHHhhccc-hhhhcccCCCCCCCCCccchhhccCcccccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRGL-IGVYHDWCEPFSTYPRTYDLIHVSGIESLIK 517 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~~i~eRGl-ig~~~~wce~f~typrtyDl~H~~~~~s~~~ 517 (595)
-.|||+|||.|.++..|.+. .|+-+.+.|.--..-...+-.|+. +-+.+|...+...-+.++|.+-+...+.
T Consensus 76 ~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~~--- 152 (230)
T d1g8sa_ 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDVA--- 152 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECCC---
T ss_pred CEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecccc---
Confidence 47999999999999888542 366666555422222233445553 3344454443322225566543322222
Q ss_pred CCCCCCCCCChhhhHHhhcccccCCcEEEEeC----------ChHHHHHHHHhHhccCceeEEe-ccCCCCCCCceEEE
Q 007645 518 NPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD----------SPEVIDKVSRIANTVRWTAAVH-DKEPGSNGREKILV 585 (595)
Q Consensus 518 ~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd----------~~~~~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~l~ 585 (595)
.....+.++.|+.|+|+|||+++|.+ ...+.+++.+.++.--.+.... +.+ +.+++-.+|
T Consensus 153 ------~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~--py~~~H~~v 223 (230)
T d1g8sa_ 153 ------QPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIE--PFEKDHVMF 223 (230)
T ss_dssp ------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECT--TTSTTEEEE
T ss_pred ------chHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCC--CCcCCeEEE
Confidence 33556778999999999999999862 1244566666666555654332 333 444555444
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=96.95 E-value=7.9e-05 Score=67.34 Aligned_cols=109 Identities=10% Similarity=0.015 Sum_probs=67.7
Q ss_pred HHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc----ch---hhhc------
Q 007645 426 VAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG----LI---GVYH------ 491 (595)
Q Consensus 426 v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG----li---g~~~------ 491 (595)
+++|+..|. +..+ .-|||+|||.|-++..|.++..= |+=.|-. +.|..+-+|- .. +.+.
T Consensus 9 ~~~~~~~l~--~~~~--~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (201)
T d1pjza_ 9 LQQYWSSLN--VVPG--ARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81 (201)
T ss_dssp HHHHHHHHC--CCTT--CEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred HHHHHHHcC--CCCC--CEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence 456777666 5555 48999999999999999776532 2223322 5555554432 10 0000
Q ss_pred ---ccCCCCCC--CC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 492 ---DWCEPFST--YP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 492 ---~wce~f~t--yp-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
-.+..+.. ++ ..||+|.+..++... ..-....++-+|-|.|+|||.+++.
T Consensus 82 ~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l-------~~~~~~~~~~~i~~~LkpgG~l~l~ 137 (201)
T d1pjza_ 82 IEIWCGDFFALTARDIGHCAAFYDRAAMIAL-------PADMRERYVQHLEALMPQACSGLLI 137 (201)
T ss_dssp SEEEEECCSSSTHHHHHSEEEEEEESCGGGS-------CHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred cceecccccccccccccceeEEEEEeeeEec-------chhhhHHHHHHHHHhcCCCcEEEEE
Confidence 01122222 23 689999988887654 2233456888999999999998774
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.94 E-value=0.0003 Score=67.35 Aligned_cols=133 Identities=14% Similarity=0.255 Sum_probs=75.2
Q ss_pred eeEEecccchhHHHhhhcC-----CCeEEEEeccCCCCCchhHHhhccc-hhhhcccCCCCCCCC---CccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTS-----DPVWVMNVVPARKSSTLSVIYDRGL-IGVYHDWCEPFSTYP---RTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~-----~~vwvmnv~p~~~~~~l~~i~eRGl-ig~~~~wce~f~typ---rtyDl~H~~~~~ 513 (595)
-.|||+|||.|+++..|.+ -.|..+-+.|.-.......+-.|+. .-+..|=..+ ..|+ -.+|.|+++
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~-~~~~~~~~~vD~i~~d--- 150 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKP-EEYRALVPKVDVIFED--- 150 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCG-GGGTTTCCCEEEEEEC---
T ss_pred CEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCc-ccccccccceEEEEEE---
Confidence 4799999999999999864 2356554444322233334445553 3333332211 1222 456666532
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe----------CChHHHHHHHHhHhccCceeEE-eccCCCCCCCce
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----------DSPEVIDKVSRIANTVRWTAAV-HDKEPGSNGREK 582 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r----------d~~~~~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~ 582 (595)
.. ..=....++-++.|.|+|||+++|. +...+..+++++.+. .++..- .+.++... .--
T Consensus 151 --~~------~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~-gf~iie~i~L~p~~~-~H~ 220 (227)
T d1g8aa_ 151 --VA------QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSE-YFEVIERLNLEPYEK-DHA 220 (227)
T ss_dssp --CC------STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHT-TSEEEEEEECTTTSS-SEE
T ss_pred --cc------ccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCCC-ceE
Confidence 11 1112346899999999999999985 223556667776554 455432 24443321 224
Q ss_pred EEEEEec
Q 007645 583 ILVATKS 589 (595)
Q Consensus 583 ~l~~~K~ 589 (595)
++|++|+
T Consensus 221 ~vv~rK~ 227 (227)
T d1g8aa_ 221 LFVVRKT 227 (227)
T ss_dssp EEEEECC
T ss_pred EEEEEeC
Confidence 6677774
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.001 Score=65.42 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=79.7
Q ss_pred ccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCCeEEEEcccccC--CCCCCceeE
Q 007645 194 IPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIPAFVAMLGTRRL--PFPAFSFDI 267 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~~~~~~~d~~~L--Pfpd~sFDl 267 (595)
+....+. +|||+.+|.|+=+..|++.... ..+.++|.++..++..+++ |.+......+.... ....+.||.
T Consensus 98 L~~~~g~--~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 98 LAPQNGE--HILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HCCCTTC--EEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred cCccccc--eeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccE
Confidence 3344444 9999999999888888876433 4678889998776655443 66655555443222 134578999
Q ss_pred EEE------cCCCcc-------ccc--------CHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 268 VHC------SRCLIP-------FTA--------YNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 268 V~~------s~vL~h-------~~~--------d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
|++ ..++.. +.+ -...+|..+.+.|||||+++.++-...-.+. ...++.++++
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~EN---E~vv~~~l~~ 248 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN---SLQIKAFLQR 248 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGT---HHHHHHHHHH
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhC---HHHHHHHHHh
Confidence 996 112211 110 1126788899999999999999975444333 3456666664
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00023 Score=71.38 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=59.1
Q ss_pred eeEEecccchhHHHhhhcCC---CeEEEEeccCCCCCchhHHhhccchhhh---cccCCCCCCCC-CccchhhccCcccc
Q 007645 443 RNIMDMNAFFGGFAAALTSD---PVWVMNVVPARKSSTLSVIYDRGLIGVY---HDWCEPFSTYP-RTYDLIHVSGIESL 515 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~---~vwvmnv~p~~~~~~l~~i~eRGlig~~---~~wce~f~typ-rtyDl~H~~~~~s~ 515 (595)
.+|||+|||.|.++..+.+. .|...-.-+ ........+-+.|+.... +.-.+.+. .| ..||+|-+.-++..
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMGYF 117 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCBTT
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-CcccceeEEEEEeccee
Confidence 47999999999887665443 233322111 001223355666764433 22222222 34 79999988766654
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEE
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVV 546 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i 546 (595)
.. ..-.++.++.+++|+|+|||.+|
T Consensus 118 ~~------~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 118 LL------YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BS------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ec------cchhHHHHHHHHHhccCCCeEEE
Confidence 43 44567789999999999999987
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.88 E-value=0.005 Score=59.01 Aligned_cols=119 Identities=17% Similarity=0.055 Sum_probs=78.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHH----HcCCC-eEEEEcccccCCC---CCCceeEEEEcCC
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFAL----ERGIP-AFVAMLGTRRLPF---PAFSFDIVHCSRC 273 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~----erg~~-~~~~~~d~~~LPf---pd~sFDlV~~s~v 273 (595)
.+++|||+|.|.=+.-|+=.. ....++-+|.+..-+.+.+ +-++. +.+....++.+.. ..++||+|+|..+
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv 150 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred CeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh
Confidence 489999999996665555331 2246778899887766643 33664 5555655555432 2368999998644
Q ss_pred CcccccCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEE
Q 007645 274 LIPFTAYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIA 330 (595)
Q Consensus 274 L~h~~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~ 330 (595)
- ....++.-....+++||.+++.-.. .+ ....+..++.++.++++...
T Consensus 151 a-----~l~~ll~~~~~~l~~~g~~i~~KG~-~~---~~El~~a~~~~~~~~~~~~~ 198 (239)
T d1xdza_ 151 A-----RLSVLSELCLPLVKKNGLFVALKAA-SA---EEELNAGKKAITTLGGELEN 198 (239)
T ss_dssp S-----CHHHHHHHHGGGEEEEEEEEEEECC--C---HHHHHHHHHHHHHTTEEEEE
T ss_pred h-----CHHHHHHHHhhhcccCCEEEEECCC-Ch---HHHHHHHHHHHHHcCCEEEE
Confidence 3 5678899999999999999986431 11 22244455666777777654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00037 Score=65.89 Aligned_cols=118 Identities=14% Similarity=0.034 Sum_probs=72.4
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-chh------------------h-hcccCCC-C---
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-LIG------------------V-YHDWCEP-F--- 497 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-lig------------------~-~~~wce~-f--- 497 (595)
..|||.|||.|-.+..|.+.-- +|+-.|.. .-|..+.++- ..+ . ..-.|-. |
T Consensus 47 ~rvLd~GCG~G~~a~~LA~~G~---~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFADRGH---SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CEEEETTCTTCTHHHHHHHTTC---EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CEEEEeCCCCcHHHHHHHhCCC---cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 4699999999999999987654 34555544 4443332221 000 0 0001111 1
Q ss_pred CCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe----CC------h--HHHHHHHHhHhccC
Q 007645 498 STYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR----DS------P--EVIDKVSRIANTVR 565 (595)
Q Consensus 498 ~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r----d~------~--~~~~~~~~~~~~~~ 565 (595)
+....+||+|...++|-+. ..-..+.++-+|-|+|||||.+++- +. + ---++++.+... .
T Consensus 124 ~~~~~~fd~i~~~~~l~~~-------~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~-~ 195 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAI-------NPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGK-I 195 (229)
T ss_dssp GSCCCCEEEEEESSSTTTS-------CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTT-T
T ss_pred ccccCceeEEEEEEEEEec-------cchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcC-C
Confidence 2345799999988888765 2334567999999999999987764 11 0 024567777765 4
Q ss_pred ceeEEe
Q 007645 566 WTAAVH 571 (595)
Q Consensus 566 W~~~~~ 571 (595)
|++...
T Consensus 196 ~~i~~l 201 (229)
T d2bzga1 196 CNIRCL 201 (229)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 766544
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.79 E-value=0.00094 Score=62.64 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=72.5
Q ss_pred eeEEecccchhHHHhhhcC--CCeEEEEeccCCCC-Cch----hHHhhccc--hhhhc-ccCCCCCCCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STL----SVIYDRGL--IGVYH-DWCEPFSTYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~-~~l----~~i~eRGl--ig~~~-~wce~f~typ-rtyDl~H~~~ 511 (595)
..|||+|||.|.|...|.. .+. |++-.|-. +-+ .-+-++|| |-+++ |-.+-..-+| .++|.||...
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~---~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDI---NYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTS---EEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CeEEEEeccCCHHHHHHHHHCCCC---ceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 5799999999999988843 233 44444433 333 33455665 22222 2222122355 7899988432
Q ss_pred ccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE-eCChHHHHHHHHhHhccCceeE
Q 007645 512 IESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV-RDSPEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~-rd~~~~~~~~~~~~~~~~W~~~ 569 (595)
. .+|....-.+.|=--..+|=++.|+|+|||.+.+ +|..+..+.+........|...
T Consensus 110 P-dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~ 167 (204)
T d1yzha1 110 S-DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLN 167 (204)
T ss_dssp C-CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred c-ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccc
Confidence 1 1221000011232235788899999999999987 5777777777766666666544
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=96.74 E-value=0.00064 Score=63.79 Aligned_cols=117 Identities=8% Similarity=0.076 Sum_probs=69.1
Q ss_pred eeEEecccchhHHHhhhcC--CCeEEEEeccCCCC-Cchh----HHhhccchhhhcccCCCC---CCCC-CccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTS--DPVWVMNVVPARKS-STLS----VIYDRGLIGVYHDWCEPF---STYP-RTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~--~~vwvmnv~p~~~~-~~l~----~i~eRGlig~~~~wce~f---~typ-rtyDl~H~~~ 511 (595)
..|||+|||.|.|+..|.. .+. |++-.|-. +.|. -+-++||--+..-.+.+. ..+| .++|.++...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~---~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f 107 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDI---NYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 107 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTS---EEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred ceEEEEEecCcHHHHHHHHhCCCC---cEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence 4699999999999999843 233 44555543 4333 355667622211111111 1244 7888877444
Q ss_pred ccccccCCCCCCCCCC-hhhhHHhhcccccCCcEEEEe-CChHHHHHHHHhHhcc
Q 007645 512 IESLIKNPGSNKNSCS-LVDLMVEMDRMLRPEGTVVVR-DSPEVIDKVSRIANTV 564 (595)
Q Consensus 512 ~~s~~~~~~~~~~~c~-~~~~llEmdRiLRP~G~~i~r-d~~~~~~~~~~~~~~~ 564 (595)
..-..+ .....|.- -..+|-||-|+|+|||.+.|+ |..+..+.+.......
T Consensus 108 p~P~~k--~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~ 160 (204)
T d2fcaa1 108 SDPWPK--KRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEY 160 (204)
T ss_dssp CCCCCS--GGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccch--hhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHC
Confidence 332221 00111222 247899999999999999875 8887777777765543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.60 E-value=0.0034 Score=64.76 Aligned_cols=118 Identities=16% Similarity=0.173 Sum_probs=79.8
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc----CC--------ceEEEEeecCcHHHHHHHHHc----CCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE----NI--------LTLSFAPRDSHKAQIQFALER----GIP 247 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~----gv--------~~~~v~~vD~s~~~l~~A~er----g~~ 247 (595)
...++.+.+++....+ .+|+|-.||+|.|...+.++ +. ....+.+.|+++.+...|+-+ +..
T Consensus 148 ~~Iv~~mv~ll~~~~~--~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~ 225 (425)
T d2okca1 148 RPLIQAMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG 225 (425)
T ss_dssp HHHHHHHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred hhhhHhhheeccCccc--ceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence 4456677777665443 48999999999999877654 10 012478899999998888754 322
Q ss_pred ---eEEEEcccccCCCCCCceeEEEEcCCCcccc---------------cC-HHHHHHHHHhhcCCCcEEEEEcCC
Q 007645 248 ---AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT---------------AY-NATYLIEVDRLLRPGGYLVISGPP 304 (595)
Q Consensus 248 ---~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~---------------~d-~~~~L~Ei~RvLRPGG~lvls~p~ 304 (595)
..+...+.... .+...||+|+++--+..-. .+ ...++..+...|++||+++++.|.
T Consensus 226 ~~~~~i~~~d~l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~ 300 (425)
T d2okca1 226 TDRSPIVCEDSLEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 300 (425)
T ss_dssp SSCCSEEECCTTTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred cccceeecCchhhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEech
Confidence 23444443322 3457899999987663111 01 125889999999999999999884
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.49 E-value=0.0092 Score=57.38 Aligned_cols=134 Identities=12% Similarity=0.038 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHH---HHHcCCC-eEEEE-ccc
Q 007645 181 DGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQF---ALERGIP-AFVAM-LGT 255 (595)
Q Consensus 181 ~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~---A~erg~~-~~~~~-~d~ 255 (595)
+++..+++ +.+..-..++ .+|+|+|||.|.++.+++.+. .++.+.+.++.-...+. ....+-+ +.+.. .++
T Consensus 50 R~~~Kl~~-~~~~~~~~~~--~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv 125 (257)
T d2p41a1 50 RGSAKLRW-FVERNLVTPE--GKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV 125 (257)
T ss_dssp THHHHHHH-HHHTTSSCCC--EEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT
T ss_pred hHHHHHHH-HHHhcCccCC--CeEEEecCCCChHHHHHHhhc-CCCceeEEEecCccccCCccccccccccccchhhhhH
Confidence 34444443 4444434433 379999999999999999873 34466666552111000 0000111 12211 122
Q ss_pred ccCCCCCCceeEEEEcCCCcccccCH-------HHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcC
Q 007645 256 RRLPFPAFSFDIVHCSRCLIPFTAYN-------ATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALC 325 (595)
Q Consensus 256 ~~LPfpd~sFDlV~~s~vL~h~~~d~-------~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~ 325 (595)
.. .+.+..|+|+|--+- + ..++ -.+|.-+.+.|+|||-|++-.-.. ......+.|+.+-...+
T Consensus 126 ~~--l~~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p---y~~~v~e~le~lq~~fg 195 (257)
T d2p41a1 126 FF--IPPERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP---YMSSVIEKMEALQRKHG 195 (257)
T ss_dssp TT--SCCCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC---CSHHHHHHHHHHHHHHC
T ss_pred Hh--cCCCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC---CChHHHHHHHHHHHHhC
Confidence 22 346789999997542 2 1121 155677778999999999875321 11223555666655444
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=96.33 E-value=0.00097 Score=64.57 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=58.0
Q ss_pred cCCCCeeeEEecccchhHHHhhhcC---CC--eEEEEeccCCCC-CchhHHhhc----cchh----hhcccCCCCCCCCC
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTS---DP--VWVMNVVPARKS-STLSVIYDR----GLIG----VYHDWCEPFSTYPR 502 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~---~~--vwvmnv~p~~~~-~~l~~i~eR----Glig----~~~~wce~f~typr 502 (595)
++.| ..|||+|||.|+++.+|.. .. |... |-. .-+..+-++ |..+ ...|.++.+.. .
T Consensus 83 i~pG--~rVLEiG~GsG~lt~~la~~v~~~g~V~~v-----D~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~--~ 153 (250)
T d1yb2a1 83 LRPG--MDILEVGVGSGNMSSYILYALNGKGTLTVV-----ERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD--Q 153 (250)
T ss_dssp CCTT--CEEEEECCTTSHHHHHHHHHHTTSSEEEEE-----CSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS--C
T ss_pred CCCc--CEEEEeeeeCcHHHHHHHHHhCCCcEEEEE-----ECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc--c
Confidence 5566 5799999999999888753 22 3332 333 445555442 3222 33456665543 7
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+||.|..+ +-..| .+|=++-|+|||||.+++.
T Consensus 154 ~fD~V~ld-~p~p~-------------~~l~~~~~~LKpGG~lv~~ 185 (250)
T d1yb2a1 154 MYDAVIAD-IPDPW-------------NHVQKIASMMKPGSVATFY 185 (250)
T ss_dssp CEEEEEEC-CSCGG-------------GSHHHHHHTEEEEEEEEEE
T ss_pred eeeeeeec-CCchH-------------HHHHHHHHhcCCCceEEEE
Confidence 89998743 33333 3789999999999999986
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.31 E-value=0.0019 Score=61.74 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred ceEEEECCCCcHHHHHHhhc---CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC----CCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGVASFGGSMLSE---NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP----FPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~---gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP----fpd~sFDlV~~s~vL 274 (595)
.+|||||++.|..+..+++. ......+.++|+.+.....+.....++.+..+|..... +.+..+|+|+.-..
T Consensus 82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~- 160 (232)
T d2bm8a1 82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA- 160 (232)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS-
T ss_pred CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC-
Confidence 38999999999776655432 11234677888876544443334456778887754322 33556888876432
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|.......-+ +....|++||++++-+.
T Consensus 161 -H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 161 -HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp -CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred -cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 3221211223 46689999999999653
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.00051 Score=64.74 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=56.9
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhc---CCC--eEEEEeccCCCCCchhHHhh---c-cchhhhcccCCCC
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDP--VWVMNVVPARKSSTLSVIYD---R-GLIGVYHDWCEPF 497 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~---~~~--vwvmnv~p~~~~~~l~~i~e---R-Glig~~~~wce~f 497 (595)
+.....++ ++.+ -+|||+|||.|.+++.|. ... |...-.-| ..+..+-+ + |+-.+..-.....
T Consensus 65 a~~l~~l~--l~~g--~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~----~~~~~a~~~~~~~~~~n~~~~~~d~~ 136 (213)
T d1dl5a1 65 ALFMEWVG--LDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSR----KICEIAKRNVERLGIENVIFVCGDGY 136 (213)
T ss_dssp HHHHHHTT--CCTT--CEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCH----HHHHHHHHHHHHTTCCSEEEEESCGG
T ss_pred HHHHHhhh--cccc--ceEEEecCccchhHHHHHHHhCCCCcEEEeecch----hhHHHhhhhHhhhcccccccccCchH
Confidence 44455555 6666 399999999999998874 232 44433222 22222222 2 2322222223344
Q ss_pred CCCC--CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 498 STYP--RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 498 ~typ--rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
..+| .+||.|++...+... .-++=|.|+|||.+|+-
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~---------------p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVGVDEV---------------PETWFTQLKEGGRVIVP 174 (213)
T ss_dssp GCCGGGCCEEEEEECSBBSCC---------------CHHHHHHEEEEEEEEEE
T ss_pred HccccccchhhhhhhccHHHh---------------HHHHHHhcCCCcEEEEE
Confidence 4555 689999987765532 11233669999999873
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.21 E-value=0.0095 Score=58.51 Aligned_cols=118 Identities=7% Similarity=-0.114 Sum_probs=71.5
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc----CCC-eEEEEcccccCCCC---CCceeEEEEc--
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER----GIP-AFVAMLGTRRLPFP---AFSFDIVHCS-- 271 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er----g~~-~~~~~~d~~~LPfp---d~sFDlV~~s-- 271 (595)
.+|||+.||.|+-+.+|++.--....+.++|+++..++..+++ |.. +.+...|...+... .+.||.|++-
T Consensus 96 ~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 96 SHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp CEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred ceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecCc
Confidence 3899999999998888876521223678889998887766554 554 56666666555322 2579999972
Q ss_pred --C--CCcc-----cc---c--C-------HHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHH
Q 007645 272 --R--CLIP-----FT---A--Y-------NATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARA 323 (595)
Q Consensus 272 --~--vL~h-----~~---~--d-------~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~ 323 (595)
. ++.. |. . + ...+|..+. .|+|||+++.++-...-.++ ...++.++++
T Consensus 176 CSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~EN---e~vV~~~L~~ 244 (293)
T d2b9ea1 176 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEEN---EDVVRDALQQ 244 (293)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGT---HHHHHHHHTT
T ss_pred ccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHh---HHHHHHHHHh
Confidence 1 1110 10 0 0 013344444 47999999999874433322 3445566653
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0035 Score=60.61 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=55.4
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC---CCeEEEEcccccCCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG---IPAFVAMLGTRRLPF 260 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg---~~~~~~~~d~~~LPf 260 (595)
...++.|.+.+....++ .|||||||.|.++..|++++. .+.++|+++.+++..+++. .++.+...|+..+.+
T Consensus 7 ~~~~~~Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLD---QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCS---CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCchHHHHHHHccCC---ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcc
Confidence 35567777777655544 899999999999999999854 5777899999999887763 347788888766543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.98 E-value=0.011 Score=57.92 Aligned_cols=81 Identities=12% Similarity=0.115 Sum_probs=61.0
Q ss_pred HHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcC------CCeEEEEcccccC
Q 007645 185 KYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERG------IPAFVAMLGTRRL 258 (595)
Q Consensus 185 ~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg------~~~~~~~~d~~~L 258 (595)
..++.|.+.+....++ +|||||+|.|.++..|++++. .+.++++++.+++..+++. .++.+...|....
T Consensus 8 ~i~~kIv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~---~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 8 LIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp HHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHHhCCCCCC--EEEEECCCchHHHHHHHhcCC---cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 4567777777665544 899999999999999999854 6777899999998887651 2467888887666
Q ss_pred CCCCCceeEEEEcC
Q 007645 259 PFPAFSFDIVHCSR 272 (595)
Q Consensus 259 Pfpd~sFDlV~~s~ 272 (595)
.++ .++.|+++-
T Consensus 83 ~~~--~~~~vV~NL 94 (278)
T d1zq9a1 83 DLP--FFDTCVANL 94 (278)
T ss_dssp CCC--CCSEEEEEC
T ss_pred hhh--hhhhhhcch
Confidence 554 356777764
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0077 Score=63.86 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=76.1
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc----CC-------------ceEEEEeecCcHHHHHHHHHc--
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE----NI-------------LTLSFAPRDSHKAQIQFALER-- 244 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~----gv-------------~~~~v~~vD~s~~~l~~A~er-- 244 (595)
...++.+.+++....+. +|+|-.||+|.|.....+. .. ....+.+.|+++.+...|+-+
T Consensus 150 ~~Iv~~mv~ll~~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cchhHhhhhcccCccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 34566777777655544 8999999999998765543 10 012577889999998888754
Q ss_pred --CCCeE------EEEcccccC-CCCCCceeEEEEcCCCcccc------------cC-HHHHHHHHHhhcCCCcEEEEEc
Q 007645 245 --GIPAF------VAMLGTRRL-PFPAFSFDIVHCSRCLIPFT------------AY-NATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 245 --g~~~~------~~~~d~~~L-Pfpd~sFDlV~~s~vL~h~~------------~d-~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.... +...+.... ......||+|+++--+..-. .+ .-.++..+.+.|+|||++.++.
T Consensus 228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 32211 111111110 12346799999986552110 01 1258999999999999999998
Q ss_pred CC
Q 007645 303 PP 304 (595)
Q Consensus 303 p~ 304 (595)
|.
T Consensus 308 P~ 309 (524)
T d2ar0a1 308 PD 309 (524)
T ss_dssp EH
T ss_pred eh
Confidence 83
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.60 E-value=0.0096 Score=60.64 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=67.9
Q ss_pred ceEEEECCCCcHHHHHHhh-cCCceEEEEeecCcHHHHHHHHHc----CCC----------------eEEEEcccccCC-
Q 007645 202 RTALDMGCGVASFGGSMLS-ENILTLSFAPRDSHKAQIQFALER----GIP----------------AFVAMLGTRRLP- 259 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~-~gv~~~~v~~vD~s~~~l~~A~er----g~~----------------~~~~~~d~~~LP- 259 (595)
.+|||..||+|.++...+. .+. ..++.+|+|+.+++.++++ +.. ..+...|+..+-
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 4899999999999996544 554 3788899999999999865 221 223333332221
Q ss_pred CCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 260 FPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
-....||+|..- ++. .+..+|..+.+.++.||.+.++..
T Consensus 125 ~~~~~fDvIDiD----PfG-s~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCC----CCC-CcHHHHHHHHHHhccCCEEEEEec
Confidence 123569999865 333 457899999999999999999865
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.29 E-value=0.0034 Score=61.13 Aligned_cols=110 Identities=11% Similarity=0.105 Sum_probs=65.4
Q ss_pred ccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC---C--CeEEEEeccCCCC-CchhHHh
Q 007645 409 KNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---D--PVWVMNVVPARKS-STLSVIY 482 (595)
Q Consensus 409 ~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~---~--~vwvmnv~p~~~~-~~l~~i~ 482 (595)
..++-.|.+|.. .....+. +..| -+|||.|||.|+++.+|.. . .|+.. |-. ..+..+-
T Consensus 75 r~tqiiypkD~s-------~Ii~~l~--i~PG--~~VLE~G~GsG~lt~~La~~vgp~G~V~~~-----d~~~~~~~~Ar 138 (264)
T d1i9ga_ 75 RGPQVIYPKDAA-------QIVHEGD--IFPG--ARVLEAGAGSGALTLSLLRAVGPAGQVISY-----EQRADHAEHAR 138 (264)
T ss_dssp SCSCCCCHHHHH-------HHHHHTT--CCTT--CEEEEECCTTSHHHHHHHHHHCTTSEEEEE-----CSCHHHHHHHH
T ss_pred CCccccchHHHH-------HHHHHhC--CCCC--CEEEecCcCCcHHHHHHHHhhCCCcEEEEe-----cCCHHHHHHHH
Confidence 345556666643 2333344 5666 4899999999999999853 2 25544 333 4444443
Q ss_pred h---c---cchhhhcccCCCC--CCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 483 D---R---GLIGVYHDWCEPF--STYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 483 e---R---Glig~~~~wce~f--~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+ + +.....+..+.-+ ..+| .+||.|.. ++-.+|. .+-++-|+|||||.+++-
T Consensus 139 ~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-dlp~P~~-------------~l~~~~~~LkpGG~lv~~ 199 (264)
T d1i9ga_ 139 RNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL-DMLAPWE-------------VLDAVSRLLVAGGVLMVY 199 (264)
T ss_dssp HHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE-ESSCGGG-------------GHHHHHHHEEEEEEEEEE
T ss_pred HhhhhhccCCCceEEEEecccccccccCCCcceEEE-ecCCHHH-------------HHHHHHhccCCCCEEEEE
Confidence 2 1 1122222222222 2355 89998864 2444454 888999999999988874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.20 E-value=0.033 Score=49.18 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=67.2
Q ss_pred cccCCCcceEEEECCC-CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---------CCCCc
Q 007645 195 PITGGTLRTALDMGCG-VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP---------FPAFS 264 (595)
Q Consensus 195 ~~~~g~~r~VLDIGCG-tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP---------fpd~s 264 (595)
....++ +||-+||| .|.++..+++.. +..+..+|.++..++.|++.+....+......... ...+.
T Consensus 23 ~~~~g~--~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 23 GVQLGT--TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCC--EEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccC
Confidence 344444 89999998 577777777662 23677889999999999998876555432211100 01245
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+|+-.- .....+..+.++|||||++++.+.
T Consensus 99 ~D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 99 PNVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 89887432 124578888999999999999875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.72 E-value=0.033 Score=49.92 Aligned_cols=101 Identities=20% Similarity=0.252 Sum_probs=67.2
Q ss_pred HHhhccccCCCcceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc---------ccC
Q 007645 190 LKQYIPITGGTLRTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---------RRL 258 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~---------~~L 258 (595)
+.+......|+ +||-+||| .|.++..+++. |. ..+..+|.++..++.|++.|....+-..+. .++
T Consensus 20 l~~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 20 FDEYPESFAGK--TVVIQGAGPLGLFGVVIARSLGA--ENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDI 95 (182)
T ss_dssp HHTCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTB--SEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHH
T ss_pred HHHHhCCCCCC--EEEEECCCccchhheeccccccc--ccccccccccccccccccccceEEEeccccchHHHHHHHHHh
Confidence 33444445555 99999998 36777777776 32 267778999999999999886544322211 111
Q ss_pred CCCCCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 259 PFPAFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 259 Pfpd~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
.....+|+|+-.-.- ...+....+.|+|||++++.+
T Consensus 96 -~~~~g~Dvvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 96 -THGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp -TTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred -hCCCCceEEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 123459998854211 235788899999999999876
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.63 E-value=0.014 Score=52.78 Aligned_cols=114 Identities=16% Similarity=0.200 Sum_probs=66.6
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc----cchh---hhcccCCCCCC-CC-Cccch
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR----GLIG---VYHDWCEPFST-YP-RTYDL 506 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR----Glig---~~~~wce~f~t-yp-rtyDl 506 (595)
+..+ ..|||+|||.|+++.+|...-- .|+-.|-. +-+..+-++ |+-. +++ +.+... .+ ..||+
T Consensus 31 ~~~g--~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~--gda~~~~~~~~~~D~ 103 (186)
T d1l3ia_ 31 PGKN--DVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME--GDAPEALCKIPDIDI 103 (186)
T ss_dssp CCTT--CEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE--SCHHHHHTTSCCEEE
T ss_pred CCCC--CEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE--CchhhcccccCCcCE
Confidence 4444 4699999999999999865421 23344544 555554433 3321 111 111111 12 57777
Q ss_pred hhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCC-hHHHHHHHHhHhccCceeE
Q 007645 507 IHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDS-PEVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 507 ~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~-~~~~~~~~~~~~~~~W~~~ 569 (595)
|=+... .=.+++++-++-+.|||||.+++..- .+-...+.+......|+..
T Consensus 104 v~~~~~------------~~~~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 104 AVVGGS------------GGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGFDVN 155 (186)
T ss_dssp EEESCC------------TTCHHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTCCCE
T ss_pred EEEeCc------------cccchHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCCCeE
Confidence 643321 12456899999999999999998753 3444555566666555443
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.56 E-value=0.01 Score=59.19 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=60.0
Q ss_pred ccccChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC---CC--eEEEEeccCCCCCchhHH
Q 007645 407 VMKNGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DP--VWVMNVVPARKSSTLSVI 481 (595)
Q Consensus 407 ~~~~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~---~~--vwvmnv~p~~~~~~l~~i 481 (595)
.+..++-.|.+|... -...|+ |..|. .|||+|||.|+++.+|.. .. |...-+-+ ..+.++
T Consensus 75 ~~r~tqiiypkD~~~-------Il~~l~--i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~----~~~~~A 139 (324)
T d2b25a1 75 MKRGTAITFPKDINM-------ILSMMD--INPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK----DHHDLA 139 (324)
T ss_dssp SCCSSCCCCHHHHHH-------HHHHHT--CCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH----HHHHHH
T ss_pred cCCCCcccccccHHH-------HHHHhC--CCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCH----HHHHHH
Confidence 344456667766443 233344 66664 699999999999988853 22 44432211 233332
Q ss_pred hhc--------------cc---hh-hhcccCCCCCCCC-CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCC
Q 007645 482 YDR--------------GL---IG-VYHDWCEPFSTYP-RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPE 542 (595)
Q Consensus 482 ~eR--------------Gl---ig-~~~~wce~f~typ-rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~ 542 (595)
-++ ++ +- ...|-|+....++ ..||.|..+ +-.+| .+|=|+-|+||||
T Consensus 140 ~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD-~p~P~-------------~~l~~~~~~LKpG 205 (324)
T d2b25a1 140 KKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD-MLNPH-------------VTLPVFYPHLKHG 205 (324)
T ss_dssp HHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEEC-SSSTT-------------TTHHHHGGGEEEE
T ss_pred HHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEeec-CcCHH-------------HHHHHHHHhccCC
Confidence 211 00 11 1223343333334 678876531 22233 2788999999999
Q ss_pred cEEEEe
Q 007645 543 GTVVVR 548 (595)
Q Consensus 543 G~~i~r 548 (595)
|.+++-
T Consensus 206 G~lv~~ 211 (324)
T d2b25a1 206 GVCAVY 211 (324)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 998864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.27 E-value=0.029 Score=51.49 Aligned_cols=104 Identities=16% Similarity=0.068 Sum_probs=68.7
Q ss_pred hccccCCCcceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCC
Q 007645 193 YIPITGGTLRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPA 262 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd 262 (595)
......|+ +||-+|||. |..+..+++. +. ..+..+|.++..++.|++.|....+ +...-+ ...
T Consensus 20 ~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~~~rl~~a~~~Ga~~~~---~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 20 TAGVGPGS--TVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNPARLAHAKAQGFEIAD---LSLDTPLHEQIAALLGE 92 (195)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCEEEE---TTSSSCHHHHHHHHHSS
T ss_pred HhCCCCCC--EEEEECcCHHHHHHHHHHHhhcc--cceeeecccchhhHhhhhccccEEE---eCCCcCHHHHHHHHhCC
Confidence 44555555 999999997 6677777654 33 3677789999999999999864322 111111 123
Q ss_pred CceeEEEEcCCCc-----cc---ccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLI-----PF---TAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~-----h~---~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
..+|+++-.-... +. .......+.++.+++||||.+++.+-
T Consensus 93 ~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 93 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred CCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 4689988532210 10 01234789999999999999999863
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.011 Score=57.28 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred cChhhhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-CchhHHh---
Q 007645 410 NGYDVFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STLSVIY--- 482 (595)
Q Consensus 410 ~~~~~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l~~i~--- 482 (595)
.++-.|.+|... -...++ +..| -.|||+|||.|+++++|.. ..-=|. -.|-. ..+..+-
T Consensus 83 ~~qiiypkd~~~-------Ii~~l~--i~pG--~~VLDiG~GsG~lt~~lA~~~~~~G~V~---~vD~~~~~~~~A~~~~ 148 (266)
T d1o54a_ 83 RTQIVYPKDSSF-------IAMMLD--VKEG--DRIIDTGVGSGAMCAVLARAVGSSGKVF---AYEKREEFAKLAESNL 148 (266)
T ss_dssp -CCCCCHHHHHH-------HHHHTT--CCTT--CEEEEECCTTSHHHHHHHHHTTTTCEEE---EECCCHHHHHHHHHHH
T ss_pred CccccchHHHHH-------HHHhhC--CCCC--CEEEECCCCCCHHHHHHHHHhCCCcEEE---EEeCCHHHHHHHHHHH
Confidence 355556666433 223344 5666 5799999999999888843 222222 22333 3444332
Q ss_pred h-ccchhhh----cccCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe-CChHHHHH
Q 007645 483 D-RGLIGVY----HDWCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR-DSPEVIDK 556 (595)
Q Consensus 483 e-RGlig~~----~~wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r-d~~~~~~~ 556 (595)
+ -|+.... .|-++.|.. ..||.+. - +-.+...+|-++-|+|||||.+++- =..+.+++
T Consensus 149 ~~~g~~~~v~~~~~d~~~~~~~--~~~D~V~-----~---------d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~ 212 (266)
T d1o54a_ 149 TKWGLIERVTIKVRDISEGFDE--KDVDALF-----L---------DVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQE 212 (266)
T ss_dssp HHTTCGGGEEEECCCGGGCCSC--CSEEEEE-----E---------CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred HHhccccCcEEEeccccccccc--cceeeeE-----e---------cCCCHHHHHHHHHhhcCCCCEEEEEeCcccHHHH
Confidence 2 2443222 222333332 6777654 2 2234556899999999999999864 33344444
Q ss_pred HHHhHhccCce
Q 007645 557 VSRIANTVRWT 567 (595)
Q Consensus 557 ~~~~~~~~~W~ 567 (595)
+.+.++.-.|.
T Consensus 213 ~~~~l~~~gF~ 223 (266)
T d1o54a_ 213 TLKKLQELPFI 223 (266)
T ss_dssp HHHHHHHSSEE
T ss_pred HHHHHHHCCce
Confidence 44444444564
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.15 E-value=0.012 Score=52.42 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=64.1
Q ss_pred cccCCCcceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc-CCCCCCceeEEEEc
Q 007645 195 PITGGTLRTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR-LPFPAFSFDIVHCS 271 (595)
Q Consensus 195 ~~~~g~~r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~-LPfpd~sFDlV~~s 271 (595)
...+++ +||-+|+| .|.++..+++. |. ++..+|.+++.++.|++.|....+...+... .....+.||.|+..
T Consensus 24 ~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 24 GCGPGK--KVGIVGLGGIGSMGTLISKAMGA---ETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TCSTTC--EEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CcCCCC--EEEEECCCCcchhHHHHhhhccc---cccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 344444 89999998 67777777765 43 5666788999999999998764443222111 11123579988764
Q ss_pred CCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 272 RCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 272 ~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
-.-.+ ...+....++|+|||++++.+.
T Consensus 99 ~~~~~-----~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 99 ASSLT-----DIDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CSCST-----TCCTTTGGGGEEEEEEEEECCC
T ss_pred ecCCc-----cchHHHHHHHhhccceEEEecc
Confidence 22211 1124567899999999999763
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.051 Score=48.27 Aligned_cols=99 Identities=15% Similarity=0.162 Sum_probs=65.2
Q ss_pred HhhccccCCCcceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC------CCC
Q 007645 191 KQYIPITGGTLRTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL------PFP 261 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L------Pfp 261 (595)
.+.....+++ +||-.|+ |.|..+..+++. |. .+...+.+++..+.+++.|....+-..+ .++ ...
T Consensus 21 ~~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~---~vi~~~~~~~~~~~~~~~Ga~~vi~~~~-~~~~~~i~~~t~ 94 (174)
T d1yb5a2 21 IHSACVKAGE--SVLVHGASGGVGLAACQIARAYGL---KILGTAGTEEGQKIVLQNGAHEVFNHRE-VNYIDKIKKYVG 94 (174)
T ss_dssp HTTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHTTCSEEEETTS-TTHHHHHHHHHC
T ss_pred HHHhCCCCCC--EEEEEeccccccccccccccccCc---ccccccccccccccccccCccccccccc-ccHHHHhhhhhc
Confidence 3333444444 9999997 466777777765 43 4555566888889999988754432211 111 123
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.+.||+|+..- ....+.+..++|+|+|.++..+.
T Consensus 95 ~~g~d~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 95 EKGIDIIIEML--------ANVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp TTCEEEEEESC--------HHHHHHHHHHHEEEEEEEEECCC
T ss_pred cCCceEEeecc--------cHHHHHHHHhccCCCCEEEEEec
Confidence 46799998642 23468888999999999999753
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.0075 Score=56.93 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=52.1
Q ss_pred HHHHHHhhhccCCCCeeeEEecccchhHHHhhhcC---C--CeEEEEeccCCCCCchhHH---h-hccc--hh--hhccc
Q 007645 427 AYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS---D--PVWVMNVVPARKSSTLSVI---Y-DRGL--IG--VYHDW 493 (595)
Q Consensus 427 ~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~---~--~vwvmnv~p~~~~~~l~~i---~-eRGl--ig--~~~~w 493 (595)
....+.|...++.| -+|||+|||.|-++|.|.. . .|...-..+ .-+..+ + ..|+ ++ .....
T Consensus 64 a~~le~L~~~l~~g--~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~----~l~~~a~~~l~~~~~~~~~~~~~~~~ 137 (224)
T d1i1na_ 64 AYALELLFDQLHEG--AKALDVGSGSGILTACFARMVGCTGKVIGIDHIK----ELVDDSVNNVRKDDPTLLSSGRVQLV 137 (224)
T ss_dssp HHHHHHTTTTSCTT--CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCH----HHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred HHHHHHHhhccCCC--CeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCH----HHHHHHHHhccccCcccccccceEEE
Confidence 34444454334554 4799999999987766633 2 244332221 112111 1 1122 11 11111
Q ss_pred C-CCCCCCC--CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 494 C-EPFSTYP--RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 494 c-e~f~typ--rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
+ ..+..+| ..||.|++...... +.-++=|.|+|||.+|+
T Consensus 138 ~gD~~~~~~~~~~fD~I~~~~~~~~---------------ip~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 138 VGDGRMGYAEEAPYDAIHVGAAAPV---------------VPQALIDQLKPGGRLIL 179 (224)
T ss_dssp ESCGGGCCGGGCCEEEEEECSBBSS---------------CCHHHHHTEEEEEEEEE
T ss_pred Eeecccccchhhhhhhhhhhcchhh---------------cCHHHHhhcCCCcEEEE
Confidence 1 1122344 68999997665442 22344478999999987
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=93.67 E-value=0.014 Score=55.78 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=62.2
Q ss_pred CCCeeeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchhHHhhcc----chhhhcccCCCCCCCCCccchhhcc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRG----LIGVYHDWCEPFSTYPRTYDLIHVS 510 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~~i~eRG----lig~~~~wce~f~typrtyDl~H~~ 510 (595)
...++.|+|+|||.|.++++|.+. .+.++..-.+ |-+.+ +--+-||. |...| ..|++...
T Consensus 79 f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~v--------i~~~~~~~ri~~~~gd~---~~~~p-~~D~~~l~ 146 (244)
T d1fp1d2 79 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV--------IENAPPLSGIEHVGGDM---FASVP-QGDAMILK 146 (244)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH--------HTTCCCCTTEEEEECCT---TTCCC-CEEEEEEE
T ss_pred ccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhh--------hhccCCCCCeEEecCCc---ccccc-cceEEEEe
Confidence 577999999999999999999533 2444433221 21111 22223443 44456 45999999
Q ss_pred CccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 511 GIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 511 ~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
+++-.|.+ +.| ..||-..=+.|+|||.++|-|
T Consensus 147 ~vLh~~~d-----e~~--~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 147 AVCHNWSD-----EKC--IEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp SSGGGSCH-----HHH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhCCH-----HHH--HHHHHHHHHHcCCCcEEEEEE
Confidence 99988841 223 358889999999999999965
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=93.30 E-value=0.15 Score=51.14 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=34.2
Q ss_pred CCCCCCceeEEEEcCCCccccc---------------------------------CHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 258 LPFPAFSFDIVHCSRCLIPFTA---------------------------------YNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 258 LPfpd~sFDlV~~s~vL~h~~~---------------------------------d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
--||+++.|++||+.++ ||.. |...+|+-=.+-|+|||+++++..
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 34889999999999999 7742 112456666777899999999764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.86 E-value=0.0054 Score=57.56 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=64.6
Q ss_pred CCCeeeEEecccchhHHHhhhcC---CC--eEEEEeccCCCCCchhHHhhccchh---h-hcccCCCCCC----CC-Ccc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTS---DP--VWVMNVVPARKSSTLSVIYDRGLIG---V-YHDWCEPFST----YP-RTY 504 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~---~~--vwvmnv~p~~~~~~l~~i~eRGlig---~-~~~wce~f~t----yp-rty 504 (595)
..+-++|+++|+|.|..+.+|.. .. |+++=+-|......-..+-.-|+-. + ..|..|..+. ++ .+|
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 34568999999999987777743 22 3433322211111112223335421 1 1122222222 33 689
Q ss_pred chhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-----ChHHHHHHHHhHhccCceeEE
Q 007645 505 DLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-----SPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 505 Dl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-----~~~~~~~~~~~~~~~~W~~~~ 570 (595)
|+|..++-.+.|. ....++|.-|+|||||.+|+-| .++.++.|++ .=+|+...
T Consensus 134 D~ifiD~~~~~~~----------~~~~l~~~~~lLkpGGvIv~Ddvl~~g~~~~~~~vr~---~~~~~~~~ 191 (214)
T d2cl5a1 134 DMVFLDHWKDRYL----------PDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG---SSSFECTH 191 (214)
T ss_dssp EEEEECSCGGGHH----------HHHHHHHHTTCEEEEEEEEESCCCCCCCHHHHHHHHH---CTTEEEEE
T ss_pred ceeeecccccccc----------cHHHHHHHhCccCCCcEEEEeCcCCCCChHHHHHHhc---cCceeehh
Confidence 9998776554332 1234677789999999877654 3566666665 34565443
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.78 E-value=0.094 Score=46.85 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=65.9
Q ss_pred hccccCCCcceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-----C-CCCCc
Q 007645 193 YIPITGGTLRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-----P-FPAFS 264 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-----P-fpd~s 264 (595)
.....+++ +||=+|||. |.++..+++. |. ..+..+|.++..++.|++.|....+...+ ... . .....
T Consensus 22 ~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga--~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G 96 (174)
T d1jqba2 22 LADIEMGS--SVVVIGIGAVGLMGIAGAKLRGA--GRIIGVGSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKG 96 (174)
T ss_dssp HTTCCTTC--CEEEECCSHHHHHHHHHHHTTTC--SCEEEECCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSC
T ss_pred HhCCCCCC--EEEEEcCCcchhhhhhhhhcccc--cccccccchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhccC
Confidence 34455555 888899996 7888888776 32 24677899999999999988643332111 111 0 12345
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
||+|+-.-.- ...+.+..++|||+|.+++.+
T Consensus 97 ~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 97 VDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred cceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 9998854321 235788889999999999976
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=92.27 E-value=0.0062 Score=60.58 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=66.3
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh----hccchhh------hcccCCCCCCCCCccchhhccC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIGV------YHDWCEPFSTYPRTYDLIHVSG 511 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig~------~~~wce~f~typrtyDl~H~~~ 511 (595)
+.|||++||.|||+.++... .-.|+-.|.. .-|..+- .-|+-.+ .-+|.+.+..--.+||+|-++-
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 68999999999999888542 2355656654 4444332 2233111 1112222222336899988653
Q ss_pred c-cccccCCCCCCCCCCh-------hhhHHhhcccccCCcEEEEeC------ChHHHHHHHHhHhccCceeEE
Q 007645 512 I-ESLIKNPGSNKNSCSL-------VDLMVEMDRMLRPEGTVVVRD------SPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 512 ~-~s~~~~~~~~~~~c~~-------~~~llEmdRiLRP~G~~i~rd------~~~~~~~~~~~~~~~~W~~~~ 570 (595)
- |+ ..+-.+ ..|+-.+=++|+|||.+++.. ..++.+.|.+-+..-..+.++
T Consensus 224 P~~~--------~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~ 288 (318)
T d1wxxa2 224 PAFA--------KGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRV 288 (318)
T ss_dssp CCSC--------CSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred Cccc--------cchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEE
Confidence 2 22 111122 367888889999999999962 234444455544444444443
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.022 Score=58.43 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=20.0
Q ss_pred ChhhhHHhhcccccCCcEEEEeC
Q 007645 527 SLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 527 ~~~~~llEmdRiLRP~G~~i~rd 549 (595)
.+...|-||=|+|||||.+|..|
T Consensus 311 ~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 311 DLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp HHHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHHhcCCCcEEEEec
Confidence 45678999999999999999865
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.05 E-value=0.21 Score=44.47 Aligned_cols=101 Identities=15% Similarity=0.013 Sum_probs=68.0
Q ss_pred hhccccCCCcceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC------CCCCC
Q 007645 192 QYIPITGGTLRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL------PFPAF 263 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L------Pfpd~ 263 (595)
+......++ +||=+|||. |.++..+++. |. ..+...|.++..++.|++.|....+........ -...+
T Consensus 22 ~~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga--~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 22 NTAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGA--SRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp TTSCCCTTC--EEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred HhhCCCCCC--EEEEECCChHHHHHHHHHHHhCC--ceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcC
Confidence 334444544 899999996 7888777776 33 256667999999999999987654422111110 01235
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCC-cEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG-GYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPG-G~lvls~p 303 (595)
.+|+|+-.- -....+.+..+.|+|| |.+++.+.
T Consensus 98 G~d~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 98 GVDYSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp CBSEEEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCcEEEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 689987432 2255789999999996 99999874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.69 E-value=0.15 Score=45.13 Aligned_cols=101 Identities=12% Similarity=0.056 Sum_probs=65.8
Q ss_pred HhhccccCCCcceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-----CCCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-----PFPAF 263 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-----Pfpd~ 263 (595)
.+.....+++ +||=+|||. |..+..+++. +.. .+...|.++..++.|++.|....+. .+.++. .+.++
T Consensus 21 ~~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~~~k~~~a~~~Ga~~~i~-~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 21 INALKVTPAS--SFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIVESRLELAKQLGATHVIN-SKTQDPVAAIKEITDG 95 (174)
T ss_dssp HTTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCS--EEEEEESCHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTS
T ss_pred HHhhCCCCCC--EEEEeCCCHHHhhhhhcccccccc--eeeeeccHHHHHHHHHHcCCeEEEe-CCCcCHHHHHHHHcCC
Confidence 3444445544 899999984 3455555554 443 4555689999999999988654332 221111 12346
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.||+|+-.- -....+.+..+++||+|.+++.+.
T Consensus 96 g~D~vid~~-------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 96 GVNFALEST-------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp CEEEEEECS-------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCcEEEEcC-------CcHHHHHHHHhcccCceEEEEEee
Confidence 799988432 124578889999999999999764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.15 Score=44.89 Aligned_cols=97 Identities=15% Similarity=0.079 Sum_probs=65.3
Q ss_pred cccCCCcceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC--------CCCCc
Q 007645 195 PITGGTLRTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP--------FPAFS 264 (595)
Q Consensus 195 ~~~~g~~r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP--------fpd~s 264 (595)
...+++ +||=+|||. |.++..+++. |. ..+..+|.++..++.|++.|....+...+ .... .....
T Consensus 23 ~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~--~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~g 97 (171)
T d1pl8a2 23 GVTLGH--KVLVCGAGPIGMVTLLVAKAMGA--AQVVVTDLSATRLSKAKEIGADLVLQISK-ESPQEIARKVEGQLGCK 97 (171)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCHHHHHHHHHTTCSEEEECSS-CCHHHHHHHHHHHHTSC
T ss_pred CCCCCC--EEEEECCCccHHHHHHHHHHcCC--ceEEeccCCHHHHHHHHHhCCcccccccc-cccccccccccccCCCC
Confidence 344444 899999985 4555556555 43 26777899999999999988765443221 1100 01246
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+|+-.-. ....+....+.+|+||++++.+.
T Consensus 98 ~Dvvid~~G-------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 98 PEVTIECTG-------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CSEEEECSC-------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred ceEEEeccC-------CchhHHHHHHHhcCCCEEEEEec
Confidence 899885431 24578889999999999999875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=91.48 E-value=0.027 Score=53.06 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhc--cc--hhhhcccCCCCCCCC--C
Q 007645 430 KNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDR--GL--IGVYHDWCEPFSTYP--R 502 (595)
Q Consensus 430 ~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eR--Gl--ig~~~~wce~f~typ--r 502 (595)
.+.|. ++.+. .|||+|||.|-++|.|...- -.|+-.+-. ..+..+-++ +. +-+.+ ...+..|| .
T Consensus 63 l~~L~--l~~g~--~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~--~d~~~g~~~~~ 133 (224)
T d1vbfa_ 63 LDELD--LHKGQ--KVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYNNIKLIL--GDGTLGYEEEK 133 (224)
T ss_dssp HHHTT--CCTTC--EEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCSSEEEEE--SCGGGCCGGGC
T ss_pred HHHhh--hcccc--eEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhccccccccc--Cchhhcchhhh
Confidence 34454 56664 89999999999988774321 123333333 233322222 11 11111 11223355 4
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.||.|++....... .+-|+ +.|+|||.+|+
T Consensus 134 pfD~Iiv~~a~~~i------------p~~l~---~qLk~GGrLV~ 163 (224)
T d1vbfa_ 134 PYDRVVVWATAPTL------------LCKPY---EQLKEGGIMIL 163 (224)
T ss_dssp CEEEEEESSBBSSC------------CHHHH---HTEEEEEEEEE
T ss_pred hHHHHHhhcchhhh------------hHHHH---HhcCCCCEEEE
Confidence 69999976654422 12233 56999999887
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.42 E-value=0.076 Score=50.90 Aligned_cols=134 Identities=13% Similarity=0.138 Sum_probs=74.1
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh----hccchh
Q 007645 414 VFEADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIG 488 (595)
Q Consensus 414 ~f~~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig 488 (595)
.|..+....+.++.. .+..| .+|+||+||+|+|+-.+.+..- -.|+-.|-. +.+..+- .-|+-+
T Consensus 89 ~f~~~~~~er~ri~~-------~~~~g--~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~ 157 (260)
T d2frna1 89 MFSPANVKERVRMAK-------VAKPD--ELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVED 157 (260)
T ss_dssp CCCGGGHHHHHHHHH-------HCCTT--CEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTT
T ss_pred cEecCCHHHHHHHHh-------hcCCc--cEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCc
Confidence 355555555555433 24444 5799999999999876644331 123333332 3333322 224433
Q ss_pred hhcccCCCCCCCC--CccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC-------ChHHHHHHHH
Q 007645 489 VYHDWCEPFSTYP--RTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD-------SPEVIDKVSR 559 (595)
Q Consensus 489 ~~~~wce~f~typ--rtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd-------~~~~~~~~~~ 559 (595)
-..-.+.-...++ ..||.|..+-.. .-.+.|-+.=++|+|||++.+-+ ..+..+.+++
T Consensus 158 ~v~~~~~D~~~~~~~~~~D~Ii~~~p~-------------~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~ 224 (260)
T d2frna1 158 RMSAYNMDNRDFPGENIADRILMGYVV-------------RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKR 224 (260)
T ss_dssp TEEEECSCTTTCCCCSCEEEEEECCCS-------------SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHH
T ss_pred eEEEEEcchHHhccCCCCCEEEECCCC-------------chHHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHH
Confidence 2222222222344 568877633221 22346667778999999986642 1234567778
Q ss_pred hHhccCceeEEe
Q 007645 560 IANTVRWTAAVH 571 (595)
Q Consensus 560 ~~~~~~W~~~~~ 571 (595)
++....+++...
T Consensus 225 ~~~~~g~~v~~~ 236 (260)
T d2frna1 225 ITKEYGYDVEKL 236 (260)
T ss_dssp HHHHTTCEEEEE
T ss_pred HHHHcCCceEEE
Confidence 887777777554
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.035 Score=52.06 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=72.0
Q ss_pred CCeeeEEecccchhHHHhhhcC---CCeEEEEeccCCCC-Cch-hHHhhccchh---hh-cccCCCCC-----CCCCccc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTS---DPVWVMNVVPARKS-STL-SVIYDRGLIG---VY-HDWCEPFS-----TYPRTYD 505 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~---~~vwvmnv~p~~~~-~~l-~~i~eRGlig---~~-~~wce~f~-----typrtyD 505 (595)
.+-++|+++|+++|==+.+|.. .+-=+..+=..... ... +.+-.-|+-- +. .|-.|..+ -.+.+||
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD 137 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 137 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCcc
Confidence 3468999999999876666632 22222222211111 111 1222223211 00 11111111 1357899
Q ss_pred hhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEeCCh----------------HHHHHHHHhHhccCceeE
Q 007645 506 LIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRDSP----------------EVIDKVSRIANTVRWTAA 569 (595)
Q Consensus 506 l~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~----------------~~~~~~~~~~~~~~W~~~ 569 (595)
+|..++--+.| .+.+-++=+.|||||.+|+-|-. .+-+-.+.|.+.-+|...
T Consensus 138 ~ifiD~dk~~y------------~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~ 205 (219)
T d2avda1 138 VAVVDADKENC------------SAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS 205 (219)
T ss_dssp EEEECSCSTTH------------HHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred EEEEeCCHHHH------------HHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99966544433 34555666899999999996321 122234556778899988
Q ss_pred EeccCCCCCCCceEEEEEe
Q 007645 570 VHDKEPGSNGREKILVATK 588 (595)
Q Consensus 570 ~~~~~~~~~~~~~~l~~~K 588 (595)
.. |- .+.++|++|
T Consensus 206 ll-----Pi-gdGl~ia~K 218 (219)
T d2avda1 206 LL-----PL-GDGLTLAFK 218 (219)
T ss_dssp EE-----CS-TTCEEEEEE
T ss_pred Ee-----ec-CCeeEEEEe
Confidence 77 22 356899988
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.13 E-value=0.11 Score=45.33 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=62.0
Q ss_pred ccccCCCcceEEEECCCC-cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC-----CCCCCceeE
Q 007645 194 IPITGGTLRTALDMGCGV-ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL-----PFPAFSFDI 267 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCGt-G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L-----Pfpd~sFDl 267 (595)
....+++ +||=+|+|. |..+..+++.. +..+..+|.++..++.+++.|....+...+ ++. ....+.+|.
T Consensus 23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~~g~~~~ 97 (166)
T d1llua2 23 TNARPGQ--WVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLGASLTVNARQ-EDPVEAIQRDIGGAHGV 97 (166)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEE
T ss_pred hCCCCCC--EEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhccCccccccccc-hhHHHHHHHhhcCCccc
Confidence 3444444 888899984 56666666652 246777899999999999988654332211 110 011233455
Q ss_pred EEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 268 VHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 268 V~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
|.+.. ....+....+.|+|||++++.+.
T Consensus 98 i~~~~--------~~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 98 LVTAV--------SNSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp EECCS--------CHHHHHHHHTTEEEEEEEEECCC
T ss_pred ccccc--------cchHHHHHHHHhcCCcEEEEEEe
Confidence 54432 13467888999999999999764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.092 Score=51.82 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.4
Q ss_pred ChhhhHHhhcccccCCcEEEEeC
Q 007645 527 SLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 527 ~~~~~llEmdRiLRP~G~~i~rd 549 (595)
++...|.||=|.|+|||.+|..+
T Consensus 244 ~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 244 EVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp HHHHHHHHHHTTCCTTCEEEESS
T ss_pred HHHHHHHHHHHhCCCCcEEEEec
Confidence 45578999999999999999753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.15 Score=44.80 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=63.7
Q ss_pred hccccCCCcceEEEECCC-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEE
Q 007645 193 YIPITGGTLRTALDMGCG-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHC 270 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCG-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~ 270 (595)
.....+|+ +||=+||| .|.++..+++. |. .+..+|.+++.++.+++.|....+...+........+.+|+++-
T Consensus 25 ~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid 99 (168)
T d1uufa2 25 HWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILN 99 (168)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHTTC---EEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred HhCCCCCC--EEEEeccchHHHHHHHHhhcccc---cchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeee
Confidence 34455555 88889997 46777777775 43 34456777778889998887644332211111122357999885
Q ss_pred cCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 271 SRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 271 s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
.-.- ...+....++|+|||++++.+.
T Consensus 100 ~~g~-------~~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 100 TVAA-------PHNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp CCSS-------CCCHHHHHTTEEEEEEEEECCC
T ss_pred eeec-------chhHHHHHHHHhcCCEEEEecc
Confidence 4322 1236677899999999999764
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=90.02 E-value=0.15 Score=47.95 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=57.4
Q ss_pred CCeeeEEecccchhHHHhhhcCC----CeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCCCccchhhccCcccc
Q 007645 440 PAIRNIMDMNAFFGGFAAALTSD----PVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIESL 515 (595)
Q Consensus 440 ~~~RnvmDm~~~~g~faa~l~~~----~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s~ 515 (595)
..++.|+|+|||.|.++.+|.++ .+.+.-.-++-+..+.. + .+-.+-||.-++.+.. ..|-|- +++-.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~---~-r~~~~~~d~~~~~P~a-d~~~l~---~vlh~ 151 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSY---P-GVEHVGGDMFVSIPKA-DAVFMK---WICHD 151 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCC---T-TEEEEECCTTTCCCCC-SCEECS---SSSTT
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccC---C-ceEEecccccccCCCc-ceEEEE---EEeec
Confidence 56999999999999999999543 34555443332221111 1 1455667765554421 233333 34444
Q ss_pred ccCCCCCCCCCChhhhHHhhcccccCCcEEEEeC
Q 007645 516 IKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVRD 549 (595)
Q Consensus 516 ~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~rd 549 (595)
|. -..| ..||-++=+.|+|||.++|-|
T Consensus 152 ~~-----d~~~--~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 152 WS-----DEHC--LKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp SC-----HHHH--HHHHHHHHHHCCSSSCEEEEE
T ss_pred CC-----HHHH--HHHHHHHHHhcCCCceEEEEE
Confidence 42 0123 348999999999999998863
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.88 E-value=0.22 Score=43.59 Aligned_cols=98 Identities=14% Similarity=0.120 Sum_probs=64.2
Q ss_pred ccccCCCcceEEEECCC--CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC------CCCCCc
Q 007645 194 IPITGGTLRTALDMGCG--VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL------PFPAFS 264 (595)
Q Consensus 194 l~~~~g~~r~VLDIGCG--tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L------Pfpd~s 264 (595)
.....+ .+||=+||+ .|..+..+++. +. ..+...|.++..++++++.|....+. ....+. -...+.
T Consensus 23 ~~~~~g--~~vlV~G~~G~vG~~~~~~~~~~g~--~~V~~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~~~~~~~~~~ 97 (170)
T d1jvba2 23 ASLDPT--KTLLVVGAGGGLGTMAVQIAKAVSG--ATIIGVDVREEAVEAAKRAGADYVIN-ASMQDPLAEIRRITESKG 97 (170)
T ss_dssp TTCCTT--CEEEEETTTSHHHHHHHHHHHHHTC--CEEEEEESSHHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHTTTSC
T ss_pred hCCCCC--CEEEEEeccccceeeeeeccccccc--ccccccccchhhHHHHHHcCCceeec-cCCcCHHHHHHHHhhccc
Confidence 344444 489999973 45666655554 43 35677789999999999988654332 221111 012356
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
||+|+.... ....+....+.|+|||.+++.+-
T Consensus 98 ~d~vid~~g-------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 98 VDAVIDLNN-------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEEEESCC-------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred chhhhcccc-------cchHHHhhhhhcccCCEEEEecc
Confidence 999986431 24567788999999999998763
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.79 E-value=0.049 Score=50.92 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=56.2
Q ss_pred HHHHHhhhccCCCCeeeEEecccchhHHHhhhc---CCCeEEEEeccCCCCCchhHHhhccchhhhcccCCCCCCCC--C
Q 007645 428 YYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALT---SDPVWVMNVVPARKSSTLSVIYDRGLIGVYHDWCEPFSTYP--R 502 (595)
Q Consensus 428 ~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~---~~~vwvmnv~p~~~~~~l~~i~eRGlig~~~~wce~f~typ--r 502 (595)
.....|. ++.+ -+|||+|||.|-.+|-|. +..|.++-+.+.-....-..+-+.|+--+.--....+..+| .
T Consensus 69 ~ml~~L~--l~~g--~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 69 IMLEIAN--LKPG--MNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHT--CCTT--CCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhhc--cCcc--ceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 3344454 5666 499999999999888764 33355443332110000011223343333222334445566 7
Q ss_pred ccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEE
Q 007645 503 TYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVV 547 (595)
Q Consensus 503 tyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~ 547 (595)
.||.|+..+.... +.+-|++ -|+|||.+|+
T Consensus 145 pfD~Iiv~~a~~~------------ip~~l~~---qL~~gGrLv~ 174 (215)
T d1jg1a_ 145 PYDVIIVTAGAPK------------IPEPLIE---QLKIGGKLII 174 (215)
T ss_dssp CEEEEEECSBBSS------------CCHHHHH---TEEEEEEEEE
T ss_pred cceeEEeeccccc------------CCHHHHH---hcCCCCEEEE
Confidence 8999996655542 2234555 4899999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=89.65 E-value=0.16 Score=49.12 Aligned_cols=140 Identities=15% Similarity=0.233 Sum_probs=80.3
Q ss_pred CCCeeeEEecccchhHHHhhhcC-CCeEEEEeccCCCC-CchhHHhh----ccc--h-hhhcccCCCCCCCCCccchhhc
Q 007645 439 TPAIRNIMDMNAFFGGFAAALTS-DPVWVMNVVPARKS-STLSVIYD----RGL--I-GVYHDWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 439 ~~~~RnvmDm~~~~g~faa~l~~-~~vwvmnv~p~~~~-~~l~~i~e----RGl--i-g~~~~wce~f~typrtyDl~H~ 509 (595)
....| |+|+|||.|.-|.+|.. .|- ..|+-+|-. .-|.++-+ -|+ + =...||-++++. ..||+|=+
T Consensus 107 ~~~~~-vlDlGtGSG~I~i~la~~~p~--~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~--~~fDlIvs 181 (274)
T d2b3ta1 107 EQPCR-ILDLGTGTGAIALALASERPD--CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAG--QQFAMIVS 181 (274)
T ss_dssp SSCCE-EEEETCTTSHHHHHHHHHCTT--SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTT--CCEEEEEE
T ss_pred ccccc-eeeeehhhhHHHHHHHhhCCc--ceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCC--CceeEEEe
Confidence 34445 89999999999988843 322 134445543 34433211 122 2 234566555443 68999987
Q ss_pred cCcccccc-----------CCCC-CCCC----CChhhhHHhhcccccCCcEEEEeCChHHHHHHHHhHhccCce-eEE-e
Q 007645 510 SGIESLIK-----------NPGS-NKNS----CSLVDLMVEMDRMLRPEGTVVVRDSPEVIDKVSRIANTVRWT-AAV-H 571 (595)
Q Consensus 510 ~~~~s~~~-----------~~~~-~~~~----c~~~~~llEmdRiLRP~G~~i~rd~~~~~~~~~~~~~~~~W~-~~~-~ 571 (595)
+--+..-. .|.. ...+ --+..++-+.-+.|+|+|++++-=..+..+.+++++...-|. +.+ .
T Consensus 182 NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf~~i~~~k 261 (274)
T d2b3ta1 182 NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCR 261 (274)
T ss_dssp CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTCTTCCEEE
T ss_pred cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCCCeEEEEE
Confidence 75443211 0000 0000 011258888999999999999953333357788888877785 333 2
Q ss_pred ccCCCCCCCceEEEEE
Q 007645 572 DKEPGSNGREKILVAT 587 (595)
Q Consensus 572 ~~~~~~~~~~~~l~~~ 587 (595)
| -.+.+++++++
T Consensus 262 D----l~g~~R~v~~r 273 (274)
T d2b3ta1 262 D----YGDNERVTLGR 273 (274)
T ss_dssp C----TTSSEEEEEEE
T ss_pred C----CCCCceEEEEe
Confidence 2 23467888775
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.08 E-value=0.053 Score=50.86 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHhhhccCCCCeeeEEecccchhHHHhhhcC
Q 007645 430 KNTLNVKLGTPAIRNIMDMNAFFGGFAAALTS 461 (595)
Q Consensus 430 ~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~ 461 (595)
...|...++.+ -+|||+|||.|-++|.|..
T Consensus 71 l~~L~~~l~~g--~~VLeIGtGsGY~ta~la~ 100 (223)
T d1r18a_ 71 LEYLRDHLKPG--ARILDVGSGSGYLTACFYR 100 (223)
T ss_dssp HHHTTTTCCTT--CEEEEESCTTSHHHHHHHH
T ss_pred HHHHhhccCCC--CeEEEecCCCCHHHHHHHH
Confidence 34343235555 5899999999999888743
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=89.05 E-value=0.36 Score=46.34 Aligned_cols=155 Identities=12% Similarity=0.190 Sum_probs=88.2
Q ss_pred hhhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccch---h
Q 007645 417 ADSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLI---G 488 (595)
Q Consensus 417 ~d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGli---g 488 (595)
.||+.+.+.+-.+.+.. ....|+|+|||.|.-+.++...|=+ +|+-+|-. .-|.++-+ -|+- -
T Consensus 93 peTE~lv~~~~~~~~~~-------~~~~vld~g~GsG~i~~~la~~~~~--~v~a~Dis~~Al~~A~~Na~~~~~~~~~~ 163 (271)
T d1nv8a_ 93 PETEELVELALELIRKY-------GIKTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFF 163 (271)
T ss_dssp TTHHHHHHHHHHHHHHH-------TCCEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEE
T ss_pred hhhhhhhhhhhhhhccc-------cccEEEEeeeeeehhhhhhhhcccc--eeeechhhhhHHHHHHHHHHHcCCCceeE
Confidence 34677777776665422 2457999999999888777554422 34445543 45554432 2332 2
Q ss_pred hh-cccCCCCCCCCCccchhhccCcccccc---------CCC----CCCCCCChhhhHHhhcccccCCcEEEEeCChHHH
Q 007645 489 VY-HDWCEPFSTYPRTYDLIHVSGIESLIK---------NPG----SNKNSCSLVDLMVEMDRMLRPEGTVVVRDSPEVI 554 (595)
Q Consensus 489 ~~-~~wce~f~typrtyDl~H~~~~~s~~~---------~~~----~~~~~c~~~~~llEmdRiLRP~G~~i~rd~~~~~ 554 (595)
+. .||-++++.....||+|=++=-...-. .|. ++.++...-.-+ +.++|+|||++++-=..+.-
T Consensus 164 i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i--~~~~L~~~G~l~~Eig~~Q~ 241 (271)
T d1nv8a_ 164 VRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF--FGRYDTSGKIVLMEIGEDQV 241 (271)
T ss_dssp EEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH--HHHCCCTTCEEEEECCTTCH
T ss_pred EeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH--HHHhcCCCCEEEEEECHHHH
Confidence 22 345555443335789887664332111 000 011111111112 36899999999996444556
Q ss_pred HHHHHhHhccCceeEEeccCCCCCCCceEEEEEec
Q 007645 555 DKVSRIANTVRWTAAVHDKEPGSNGREKILVATKS 589 (595)
Q Consensus 555 ~~~~~~~~~~~W~~~~~~~~~~~~~~~~~l~~~K~ 589 (595)
++|+++++..-| ..| -.+.+++++++|+
T Consensus 242 ~~v~~l~~~~g~---~kD----l~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 242 EELKKIVSDTVF---LKD----SAGKYRFLLLNRR 269 (271)
T ss_dssp HHHTTTSTTCEE---EEC----TTSSEEEEEEECC
T ss_pred HHHHHHHHhCCE---Eec----cCCCcEEEEEEEc
Confidence 788888877655 232 2357899999986
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=1 Score=43.03 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=79.8
Q ss_pred ceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC---CCCCceeEEEEcCCCcccc
Q 007645 202 RTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP---FPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 202 r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP---fpd~sFDlV~~s~vL~h~~ 278 (595)
.+|+|+-||.|.+...|...|+..--+..+|+++.+++.-+.+.....+...|+..+. ++...+|+++...-=..+.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccc
Confidence 4799999999999988888787543466789999999888887766666666666553 2223689998743211111
Q ss_pred ---------cCHHHHHHHHHhhc-----CCCcEEEEE-cCCCCCCCCchhHHHHHHHHHHcCcEEEEeecc
Q 007645 279 ---------AYNATYLIEVDRLL-----RPGGYLVIS-GPPVQWPKQDKEWADLQAVARALCYELIAVDGN 334 (595)
Q Consensus 279 ---------~d~~~~L~Ei~RvL-----RPGG~lvls-~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~~~ 334 (595)
+....++.++.|++ ||- +|++- ++.. .....++.+.+.++++++++.....+
T Consensus 83 ~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l---~~~~~~~~i~~~l~~~GY~v~~~vln 149 (343)
T d1g55a_ 83 RIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGF---EVSSTRDLLIQTIENCGFQYQEFLLS 149 (343)
T ss_dssp -------------CHHHHHHHHGGGCSSCCS-EEEEEEETTG---GGSHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred ccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCc---ccchhhHHHHhhhhccccccceeeee
Confidence 11123455555554 465 33332 2211 12234777888888999887655433
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.87 E-value=0.33 Score=42.00 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=60.9
Q ss_pred cccCCCcceEEEECCCC-cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc---ccCC-CCCCceeEEE
Q 007645 195 PITGGTLRTALDMGCGV-ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT---RRLP-FPAFSFDIVH 269 (595)
Q Consensus 195 ~~~~g~~r~VLDIGCGt-G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~---~~LP-fpd~sFDlV~ 269 (595)
...+++ +||=.|+|. |..+..+++.. ...+..+|.++..++++++.|....+...+. ..+. ...+.+|+|.
T Consensus 24 ~~~~g~--~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~ 99 (168)
T d1rjwa2 24 GAKPGE--WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 99 (168)
T ss_dssp TCCTTC--EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCCC--EEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEe
Confidence 344444 888899985 45555566552 2256778999999999999887544332111 0000 1233445554
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+. . ....+....+.|+|||.+++.+.
T Consensus 100 ~~-~-------~~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 100 TA-V-------SKPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp SS-C-------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred ec-C-------CHHHHHHHHHHhccCCceEeccc
Confidence 32 1 24578899999999999999764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.73 E-value=0.58 Score=43.46 Aligned_cols=90 Identities=18% Similarity=0.273 Sum_probs=53.8
Q ss_pred EEEEcccccC--CCCCCceeEEEEcCCCc----cc------ccCHHHHHHHHHhhcCCCcEEEEEcCCCCC-CC-CchhH
Q 007645 249 FVAMLGTRRL--PFPAFSFDIVHCSRCLI----PF------TAYNATYLIEVDRLLRPGGYLVISGPPVQW-PK-QDKEW 314 (595)
Q Consensus 249 ~~~~~d~~~L--Pfpd~sFDlV~~s~vL~----h~------~~d~~~~L~Ei~RvLRPGG~lvls~p~~~~-~~-~~~~w 314 (595)
.+.++|...+ .++++++|+|++.--.. .| .+.....+.++.|+|||||.+++......- .. .....
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~ 85 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI 85 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence 3455553222 36789999999965331 11 112357789999999999999987652211 11 11224
Q ss_pred HHHHHHHHHcCcEEEEeecceeEeeccC
Q 007645 315 ADLQAVARALCYELIAVDGNTVIWKKPV 342 (595)
Q Consensus 315 ~~l~~la~~~~w~~v~~~~~~~iw~K~~ 342 (595)
..+..+.+..+|... +..+|.++.
T Consensus 86 ~~~~~~~~~~~~~~~----~~i~~~k~~ 109 (279)
T d1eg2a_ 86 SIISHMRQNSKMLLA----NLIIWNYPN 109 (279)
T ss_dssp HHHHHHHHHCCCEEE----EEEEEECSC
T ss_pred hHHHHHHhccCceee----eeeeecccc
Confidence 445666777777654 244566654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.14 E-value=0.36 Score=42.45 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=62.4
Q ss_pred HhhccccCCCcceEEEECC--CCcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC------CC
Q 007645 191 KQYIPITGGTLRTALDMGC--GVASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP------FP 261 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGC--GtG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP------fp 261 (595)
.+......++ +||=.|+ |.|.++..+++. |. .+...+.+++..+.+++.|....+.. ...++. ..
T Consensus 18 ~~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~---~vi~~~~~~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~t~ 91 (183)
T d1pqwa_ 18 CEVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGA---RIYTTAGSDAKREMLSRLGVEYVGDS-RSVDFADEILELTD 91 (183)
T ss_dssp HTTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTC---EEEEEESSHHHHHHHHTTCCSEEEET-TCSTHHHHHHHHTT
T ss_pred HHHhCCCCCC--EEEEECCCCCcccccchhhccccc---cceeeecccccccccccccccccccC-CccCHHHHHHHHhC
Confidence 3333444444 8998774 356777777766 44 34444556777888888886643321 111110 23
Q ss_pred CCceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 262 AFSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 262 d~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
...||+|+..-. ...+.++.++|+++|+++..+.
T Consensus 92 ~~g~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~G~ 125 (183)
T d1pqwa_ 92 GYGVDVVLNSLA--------GEAIQRGVQILAPGGRFIELGK 125 (183)
T ss_dssp TCCEEEEEECCC--------THHHHHHHHTEEEEEEEEECSC
T ss_pred CCCEEEEEeccc--------chHHHHHHHHhcCCCEEEEEcc
Confidence 467999997532 2357788999999999998753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.66 E-value=0.89 Score=44.39 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=48.6
Q ss_pred HHHHHHHHhhccccC----CCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHc--CCCeEEEEccc
Q 007645 184 DKYIDKLKQYIPITG----GTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALER--GIPAFVAMLGT 255 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~----g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~er--g~~~~~~~~d~ 255 (595)
...++.|.+.+.... ....+|||||.|.|.++..|++++- .-.+..++.++...+.-++. +.+..+...|.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 345666666654331 2345899999999999999987631 12567789999988887765 33456666554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.65 E-value=0.87 Score=43.49 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=57.1
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC------------------------CchhHHhhccchhhhcc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS------------------------STLSVIYDRGLIGVYHD 492 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~------------------------~~l~~i~eRGlig~~~~ 492 (595)
+...+-++||-+|+|.|+-+..+.+.+.--+-+|-.|.. ..+.++.+.|.--+ .
T Consensus 68 ~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~- 145 (276)
T d1mjfa_ 68 LAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-K- 145 (276)
T ss_dssp HHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-H-
T ss_pred hcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-h-
Confidence 345668999999999999999988777533333433311 11223333332111 1
Q ss_pred cCCCCCCCCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 493 WCEPFSTYPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 493 wce~f~typrtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
+ .++||+|-.+- +.... ....---...+-.+-|.|+|+|.++..
T Consensus 146 ------~-~~~yDvIi~D~-~~~~~----~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 146 ------N-NRGFDVIIADS-TDPVG----PAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp ------H-CCCEEEEEEEC-CCCC---------TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred ------c-cCCCCEEEEeC-CCCCC----CcccccCHHHHHhhHhhcCCCceEEEe
Confidence 1 26899997543 33221 111222235678899999999999985
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=86.42 E-value=0.49 Score=43.40 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=47.1
Q ss_pred CCCCceeEEEEcCCCc----ccc---------cCHHHHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCc
Q 007645 260 FPAFSFDIVHCSRCLI----PFT---------AYNATYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCY 326 (595)
Q Consensus 260 fpd~sFDlV~~s~vL~----h~~---------~d~~~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w 326 (595)
++++++|+|++.--.. .+. +.....+.++.|+|+|||.+++... ......+...+...+|
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~-------~~~~~~~~~~~~~~g~ 91 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT-------PFNCAFICQYLVSKGM 91 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC-------HHHHHHHHHHHHHTTC
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC-------chhhhhhhhhhhcccc
Confidence 5688999999864321 111 1123578899999999999987642 1223345566677788
Q ss_pred EEEEeecceeEeeccCC
Q 007645 327 ELIAVDGNTVIWKKPVG 343 (595)
Q Consensus 327 ~~v~~~~~~~iw~K~~~ 343 (595)
.... ..+|.|+..
T Consensus 92 ~~~~----~iiW~k~~~ 104 (256)
T d1g60a_ 92 IFQN----WITWDKRDG 104 (256)
T ss_dssp EEEE----EEEECCCCS
T ss_pred eeee----eeEeeeccc
Confidence 6552 457888654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=86.16 E-value=0.046 Score=54.04 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=55.5
Q ss_pred cCCCCeeeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHh----hccchhhhcccCCC-------CCCCCCcc
Q 007645 437 LGTPAIRNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIY----DRGLIGVYHDWCEP-------FSTYPRTY 504 (595)
Q Consensus 437 ~~~~~~RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~----eRGlig~~~~wce~-------f~typrty 504 (595)
+..+ .+|||++||.|+|+.++.....- .|+-.|.. ..|..+- .-|+-...+-.+.. +..-.++|
T Consensus 143 ~~~g--~~VLDl~~g~G~~si~~a~~ga~--~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPG--DRVLDVFTYTGGFAIHAAIAGAD--EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTT--CEEEETTCTTTHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCC--CeeecccCcccchhhhhhhcCCc--EEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence 4445 48999999999999877554321 22233332 3333321 22333322222221 11123688
Q ss_pred chhhccCc-cccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 505 DLIHVSGI-ESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 505 Dl~H~~~~-~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
|+|=++-- |+.-+. ...........++...=++|+|||.+++.
T Consensus 219 D~Vi~DpP~~~~~~~-~~~~~~~~y~~l~~~a~~ll~pGG~lv~~ 262 (324)
T d2as0a2 219 DIVVLDPPAFVQHEK-DLKAGLRAYFNVNFAGLNLVKDGGILVTC 262 (324)
T ss_dssp EEEEECCCCSCSSGG-GHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CchhcCCccccCCHH-HHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 98865432 221100 00000012346788888999999999996
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.20 E-value=0.64 Score=42.20 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=62.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhcc-chh-hhcccCCCCCCCCCccchhhccCccccccCC
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRG-LIG-VYHDWCEPFSTYPRTYDLIHVSGIESLIKNP 519 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRG-lig-~~~~wce~f~typrtyDl~H~~~~~s~~~~~ 519 (595)
.+|||+|||.|+++.++...+- .+|+-.|-. ..+..+.+.- ..+ ...-.+.-...++..||+|=++--|...
T Consensus 48 ~~vLDlg~GtG~l~i~a~~~g~--~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~~~--- 122 (201)
T d1wy7a1 48 KVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ--- 122 (201)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS---
T ss_pred CEEEECcCcchHHHHHHHHcCC--CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccccc---
Confidence 4799999999999876655542 133333433 5555544321 011 1111222334467789998766655422
Q ss_pred CCCCCCCChhhhHHhhcccccCCcE--EEEeCChHHHHHHHHhHhccCceeEE
Q 007645 520 GSNKNSCSLVDLMVEMDRMLRPEGT--VVVRDSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 520 ~~~~~~c~~~~~llEmdRiLRP~G~--~i~rd~~~~~~~~~~~~~~~~W~~~~ 570 (595)
.....+..+. +.+.+++. .+-.......+.+++++..-.|.+..
T Consensus 123 ---~~~~d~~~l~----~~~~~~~~v~~ih~~~~~~~~~i~~~~~~~g~~i~~ 168 (201)
T d1wy7a1 123 ---RKHADRPFLL----KAFEISDVVYSIHLAKPEVRRFIEKFSWEHGFVVTH 168 (201)
T ss_dssp ---STTTTHHHHH----HHHHHCSEEEEEEECCHHHHHHHHHHHHHTTEEEEE
T ss_pred ---cccccHHHHH----HHHhhcccchhcccchHHHHHHHHHHHhhcCceEEE
Confidence 2334443322 23334443 34445666667778888877787654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=84.36 E-value=3.2 Score=39.22 Aligned_cols=128 Identities=10% Similarity=-0.056 Sum_probs=78.1
Q ss_pred cceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCC-CCceeEEEEcCCCcccc-
Q 007645 201 LRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFP-AFSFDIVHCSRCLIPFT- 278 (595)
Q Consensus 201 ~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfp-d~sFDlV~~s~vL~h~~- 278 (595)
..+|||+=||.|.+...|.+.|+.. +.++|+++.+++.-+.+..... ..|+.++... -..+|+++...-=..+.
T Consensus 11 ~lrv~~lFsG~Gg~~~gl~~aG~~~--v~a~e~d~~a~~~~~~N~~~~~--~~Di~~~~~~~~~~~Dll~ggpPCq~fS~ 86 (327)
T d2c7pa1 11 GLRFIDLFAGLGGFRLALESCGAEC--VYSNEWDKYAQEVYEMNFGEKP--EGDITQVNEKTIPDHDILCAGFPCQAFSI 86 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEE--EEEECCCHHHHHHHHHHHSCCC--BSCGGGSCGGGSCCCSEEEEECCCTTTCT
T ss_pred CCeEEEECccccHHHHHHHHCCCeE--EEEEeCCHHHHHHHHHHCCCCC--cCchhcCchhhcceeeeeecccccchhhh
Confidence 4589999999999999999988753 5678999999988877754432 3555554321 13589999733111111
Q ss_pred -------cCHH----HHHHHHHhhcCCCcEEEEEcCCCCCCCCchhHHHHHHHHHHcCcEEEEee
Q 007645 279 -------AYNA----TYLIEVDRLLRPGGYLVISGPPVQWPKQDKEWADLQAVARALCYELIAVD 332 (595)
Q Consensus 279 -------~d~~----~~L~Ei~RvLRPGG~lvls~p~~~~~~~~~~w~~l~~la~~~~w~~v~~~ 332 (595)
.+.. ..+.++.+.++|.=.++=-++..........+..+.+.++.+++......
T Consensus 87 ag~~~g~~d~r~~l~~~~~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~v 151 (327)
T d2c7pa1 87 SGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKV 151 (327)
T ss_dssp TSCCCGGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEE
T ss_pred hhhhcCCcccchhHHHHHHHHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeE
Confidence 1211 23344555678864333233332222233346777788888888766443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.30 E-value=1.3 Score=38.88 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=66.7
Q ss_pred HHhhccccCCCcceEEEECCCC--cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEccccc----C-CCCC
Q 007645 190 LKQYIPITGGTLRTALDMGCGV--ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRR----L-PFPA 262 (595)
Q Consensus 190 L~~~l~~~~g~~r~VLDIGCGt--G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~----L-Pfpd 262 (595)
+.+.....+|+ +||=.|++. |..+..|++.. +..+..++.+++..+.+++.|....+...+... + -...
T Consensus 21 l~~~~~v~~G~--~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~ 96 (182)
T d1v3va2 21 LLEVCGVKGGE--TVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP 96 (182)
T ss_dssp HHTTTCCCSSC--EEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred HHHHhCCCCCC--EEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhc
Confidence 34444555555 899888754 57777777762 235566677888899999988765543222110 0 1133
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
+.+|+|+-.- ....+.+..++|+|||.+++.+
T Consensus 97 ~Gvd~v~D~v--------G~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 97 DGYDCYFDNV--------GGEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp TCEEEEEESS--------CHHHHHHHGGGEEEEEEEEECC
T ss_pred CCCceeEEec--------CchhhhhhhhhccCCCeEEeec
Confidence 5699988431 1457889999999999999976
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=83.64 E-value=0.56 Score=44.45 Aligned_cols=85 Identities=12% Similarity=0.023 Sum_probs=57.2
Q ss_pred HHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHH---HHHHHHc----C-------CCeEEEEcc
Q 007645 189 KLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQ---IQFALER----G-------IPAFVAMLG 254 (595)
Q Consensus 189 ~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~---l~~A~er----g-------~~~~~~~~d 254 (595)
.|.+.+....+...+|||.-||.|..+..|+..|. .|+.++-++.. ++.+.++ . .+..++..|
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~---~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~D 153 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC---CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESC
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC---EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCc
Confidence 45555655555555899999999999999999875 56667777654 3333332 1 135777777
Q ss_pred ccc-CCCCCCceeEEEEcCCCcc
Q 007645 255 TRR-LPFPAFSFDIVHCSRCLIP 276 (595)
Q Consensus 255 ~~~-LPfpd~sFDlV~~s~vL~h 276 (595)
... +.-...+||+|+.--++.+
T Consensus 154 s~~~L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 154 SLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhccCCCCCEEEECCCCcc
Confidence 433 4434567999998877744
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.34 E-value=1 Score=39.76 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=61.4
Q ss_pred hhccccCCCcceEEEECCCC-cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC------CCCCCc
Q 007645 192 QYIPITGGTLRTALDMGCGV-ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL------PFPAFS 264 (595)
Q Consensus 192 ~~l~~~~g~~r~VLDIGCGt-G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L------Pfpd~s 264 (595)
+....+.++ +||=+|||. |.++..+++. .-...+..+|.+++.++.|++.|....+-..+.... -...+.
T Consensus 23 ~~~~~~~g~--tVlI~G~GgvGl~ai~~ak~-~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 23 KTGKVKPGS--TCVVFGLGGVGLSVIMGCKS-AGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp TTSCCCTTC--EEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred HhhCCCCCC--EEEEECCCchhHHHHHHHHH-cCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhcccc
Confidence 333444444 899999985 4555555554 112467888999999999999997654432221110 012356
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|.|+-.- .....+...+..+++.+|.+++.+.
T Consensus 100 ~d~vi~~~------g~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 100 VGYTFEVI------GHLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp CCEEEECS------CCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred ceEEEEeC------CchHHHHHHHHHhhcCCeEEEEEEc
Confidence 88877432 1223333334445566699999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=83.18 E-value=1.2 Score=39.24 Aligned_cols=102 Identities=14% Similarity=0.027 Sum_probs=62.2
Q ss_pred HhhccccCCCcceEEEECCCCc-HHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC------CCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGVA-SFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL------PFPA 262 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG-~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L------Pfpd 262 (595)
.+....+.++ +||=+|||.. .++..+++. +. ..+..+|.++..++.|++.|....+...+.... -...
T Consensus 20 ~~~a~~~~G~--~VlV~GaGgvGl~a~~~ak~~G~--~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~ 95 (174)
T d1p0fa2 20 VNTAKVTPGS--TCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTN 95 (174)
T ss_dssp HTTTCCCTTC--EEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTT
T ss_pred HHhhCCCCCC--EEEEECCCchhHHHHHHHHHcCC--ceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcC
Confidence 3444455555 9999999854 555555554 43 357778999999999999987644422111100 0123
Q ss_pred CceeEEEEcCCCcccccCHHHHHHHHHhhcC-CCcEEEEEcC
Q 007645 263 FSFDIVHCSRCLIPFTAYNATYLIEVDRLLR-PGGYLVISGP 303 (595)
Q Consensus 263 ~sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLR-PGG~lvls~p 303 (595)
+.+|.|+-.-. ....+.+....++ ++|.+++.+.
T Consensus 96 ~G~d~vid~~g-------~~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 96 GGVDYAVECAG-------RIETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SCBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred CCCcEEEEcCC-------CchHHHHHHHHHHHhcCceEEEEE
Confidence 46888874321 2345566666665 4699998764
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=82.40 E-value=0.68 Score=43.66 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=44.0
Q ss_pred HHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCC
Q 007645 184 DKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSENILTLSFAPRDSHKAQIQFALERGI 246 (595)
Q Consensus 184 ~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~ 246 (595)
..+++.+.+.... . ...|||.=||+|+.+.+....|- .+.++|+++..++.|++|-.
T Consensus 237 ~~L~~rlI~~~s~-~--gdiVlDpF~GSGTT~~AA~~lgR---~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 237 AKLPEFFIRMLTE-P--DDLVVDIFGGSNTTGLVAERESR---KWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp THHHHHHHHHHCC-T--TCEEEETTCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHGGGS
T ss_pred hHHHHHhhhhccc-C--CCEEEecCCCCcHHHHHHHHcCC---cEEEEeCCHHHHHHHHHHHH
Confidence 4556666665533 3 34999999999999988887764 67788999999999998843
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=82.34 E-value=0.16 Score=44.97 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=59.7
Q ss_pred ccccCCCcceEEEECC-C-CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc-ccCCCCCCceeEEE
Q 007645 194 IPITGGTLRTALDMGC-G-VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT-RRLPFPAFSFDIVH 269 (595)
Q Consensus 194 l~~~~g~~r~VLDIGC-G-tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~-~~LPfpd~sFDlV~ 269 (595)
....+++ +||=.|+ | .|.++..+++. |. .+..++.++...+.+++.|....+...+. .... ..+.+|+|+
T Consensus 23 ~~~~~g~--~VlI~ga~G~vG~~aiqlak~~G~---~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~-~~~g~D~v~ 96 (171)
T d1iz0a2 23 AQARPGE--KVLVQAAAGALGTAAVQVARAMGL---RVLAAASRPEKLALPLALGAEEAATYAEVPERAK-AWGGLDLVL 96 (171)
T ss_dssp TTCCTTC--EEEESSTTBHHHHHHHHHHHHTTC---EEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHH-HTTSEEEEE
T ss_pred hCCCCCC--EEEEEeccccchhhhhhhhccccc---ccccccccccccccccccccceeeehhhhhhhhh-ccccccccc
Confidence 3444444 8998885 3 46777777776 44 45566777888889998887654432221 1111 135699988
Q ss_pred EcCCCcccccCHHHHHHHHHhhcCCCcEEEEEc
Q 007645 270 CSRCLIPFTAYNATYLIEVDRLLRPGGYLVISG 302 (595)
Q Consensus 270 ~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~ 302 (595)
-. . . ..+....+.|+|||++++.+
T Consensus 97 d~--~-G------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 97 EV--R-G------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp EC--S-C------TTHHHHHTTEEEEEEEEEC-
T ss_pred cc--c-c------hhHHHHHHHHhcCCcEEEEe
Confidence 52 2 1 12567789999999999865
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=82.21 E-value=1.1 Score=38.93 Aligned_cols=98 Identities=15% Similarity=0.012 Sum_probs=65.1
Q ss_pred hccccCCCcceEEEECCC--CcHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCC------CCCCc
Q 007645 193 YIPITGGTLRTALDMGCG--VASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLP------FPAFS 264 (595)
Q Consensus 193 ~l~~~~g~~r~VLDIGCG--tG~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LP------fpd~s 264 (595)
.....+++ +||=.|+| .|.++..+++. .+..+...+.+++..+.+++.|....+-.. ..++. ...+.
T Consensus 23 ~~~l~~g~--~Vlv~ga~g~vG~~~iqlak~--~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~-~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 23 TYEIKPDE--QFLFHAAAGGVGLIACQWAKA--LGAKLIGTVGTAQKAQSALKAGAWQVINYR-EEDLVERLKEITGGKK 97 (179)
T ss_dssp TSCCCTTC--EEEESSTTBHHHHHHHHHHHH--HTCEEEEEESSHHHHHHHHHHTCSEEEETT-TSCHHHHHHHHTTTCC
T ss_pred HhCCCCCC--EEEEEccccccchHHHHHHHH--hCCeEeecccchHHHHHHHhcCCeEEEECC-CCCHHHHHHHHhCCCC
Confidence 33444444 89988766 56888888876 234677778999999999999866433211 11110 12467
Q ss_pred eeEEEEcCCCcccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 265 FDIVHCSRCLIPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 265 FDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+|+|+..-. ...+....+.|+++|.+++...
T Consensus 98 ~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~g~ 128 (179)
T d1qora2 98 VRVVYDSVG--------RDTWERSLDCLQRRGLMVSFGN 128 (179)
T ss_dssp EEEEEECSC--------GGGHHHHHHTEEEEEEEEECCC
T ss_pred eEEEEeCcc--------HHHHHHHHHHHhcCCeeeeccc
Confidence 999886532 1246788999999999887653
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=82.16 E-value=0.94 Score=44.85 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=59.9
Q ss_pred ccCCeeecCCCCCcccccHHHHHHHHHhhccccCCCcceEEEECCCCcHHHHHHhhc------CCceEEEEeecCcHHHH
Q 007645 165 ESGPYFTFPGGGTMFADGADKYIDKLKQYIPITGGTLRTALDMGCGVASFGGSMLSE------NILTLSFAPRDSHKAQI 238 (595)
Q Consensus 165 ~e~~~~~fp~~g~~F~~~a~~yi~~L~~~l~~~~g~~r~VLDIGCGtG~~a~~La~~------gv~~~~v~~vD~s~~~l 238 (595)
.+|+..+-|.-+..|......++..+.+.+.. ....+|+|+|+|.|.++..++.. ....+.+..++.|+.+.
T Consensus 46 ~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~--~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~ 123 (365)
T d1zkda1 46 REGDFTTSPEISQMFGELLGLWSASVWKAADE--PQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLR 123 (365)
T ss_dssp ----CCSHHHHCHHHHHHHHHHHHHHHHHTTC--CSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHH
T ss_pred CCCCeECCCchHHHHHHHHHHHHHHHHHHhCC--CccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHH
Confidence 34555555555555544433333333333322 22447999999999998877553 12346788889999877
Q ss_pred HHHHHcCCC--eEEEEcccccCCCCCCceeEEEEcCCCcccc
Q 007645 239 QFALERGIP--AFVAMLGTRRLPFPAFSFDIVHCSRCLIPFT 278 (595)
Q Consensus 239 ~~A~erg~~--~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~ 278 (595)
+.-+++-.. ......+.+.+|. ..-+|+|+..|--++
T Consensus 124 ~~Q~~~l~~~~~i~w~~~~~~~~~---~~g~iiaNE~fDAlP 162 (365)
T d1zkda1 124 QKQQTLLAGIRNIHWHDSFEDVPE---GPAVILANEYFDVLP 162 (365)
T ss_dssp HHHHHHSTTCSSEEEESSGGGSCC---SSEEEEEESSGGGSC
T ss_pred HHHHHHhcccccceeccChhhccc---CCeEEEecccCcccc
Confidence 666654222 1222233444441 225788877775444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=81.86 E-value=2.6 Score=36.12 Aligned_cols=91 Identities=19% Similarity=0.106 Sum_probs=61.5
Q ss_pred eEEEECCCC--cHHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccCCCCCCceeEEEEcCCCcccccC
Q 007645 203 TALDMGCGV--ASFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRLPFPAFSFDIVHCSRCLIPFTAY 280 (595)
Q Consensus 203 ~VLDIGCGt--G~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~LPfpd~sFDlV~~s~vL~h~~~d 280 (595)
+|+=||||. |+++..|.+.+. ...+.+.|.+++.++.|++.+.-....... . ...+...|+|+..--. ..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~-~--~~~~~~~dlIila~p~----~~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGIIDEGTTSI-A--KVEDFSPDFVMLSSPV----RT 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTSCSEEESCG-G--GGGGTCCSEEEECSCH----HH
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhcchhhhhhh-h--hhhccccccccccCCc----hh
Confidence 477799984 467777777764 347888999999999999988643333211 1 1123457999865321 23
Q ss_pred HHHHHHHHHhhcCCCcEEEEE
Q 007645 281 NATYLIEVDRLLRPGGYLVIS 301 (595)
Q Consensus 281 ~~~~L~Ei~RvLRPGG~lvls 301 (595)
...++.++...++++-.+.-.
T Consensus 75 ~~~vl~~l~~~~~~~~ii~d~ 95 (171)
T d2g5ca2 75 FREIAKKLSYILSEDATVTDQ 95 (171)
T ss_dssp HHHHHHHHHHHSCTTCEEEEC
T ss_pred hhhhhhhhhcccccccccccc
Confidence 457888999999988666544
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=81.27 E-value=2.7 Score=36.36 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=61.1
Q ss_pred ceEEEECCCC-cHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC----C-CCCCceeEEEEcCCC
Q 007645 202 RTALDMGCGV-ASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL----P-FPAFSFDIVHCSRCL 274 (595)
Q Consensus 202 r~VLDIGCGt-G~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L----P-fpd~sFDlV~~s~vL 274 (595)
.+||=+|+|. |..+..+++. +.. .+...|.++..++.+++.|....+. ...... . ...+.+|+|+-.-.
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~--~vv~~~~~~~k~~~~~~~ga~~~i~-~~~~~~~~~~~~~~~~g~d~vid~~g- 109 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPA--TVIALDVKEEKLKLAERLGADHVVD-ARRDPVKQVMELTRGRGVNVAMDFVG- 109 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCC--EEEEEESSHHHHHHHHHTTCSEEEE-TTSCHHHHHHHHTTTCCEEEEEESSC-
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCc--ccccccchhHHHHHHhhcccceeec-CcccHHHHHHHhhCCCCceEEEEecC-
Confidence 3899999985 4555566554 432 5667799999999999988653332 211110 0 12346999885421
Q ss_pred cccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 275 IPFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 275 ~h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
....+....+.|++||++++.+.
T Consensus 110 ------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 ------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred ------cchHHHHHHHHHhCCCEEEEEeC
Confidence 24468889999999999999874
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=81.20 E-value=0.32 Score=44.55 Aligned_cols=68 Identities=13% Similarity=-0.001 Sum_probs=38.8
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhhccchhhhcccCCCCCCCCCccchhhccCccc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYDRGLIGVYHDWCEPFSTYPRTYDLIHVSGIES 514 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~eRGlig~~~~wce~f~typrtyDl~H~~~~~s 514 (595)
++|+|+|||.|.++-++.....- +|+-+|-. ..+..+-+.- .-..--|.-+...|..||+|=++--|-
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~--~~~~~~~~D~~~l~~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNC--GGVNFMVADVSEISGKYDTWIMNPPFG 118 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHC--TTSEEEECCGGGCCCCEEEEEECCCC-
T ss_pred CEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHcc--ccccEEEEehhhcCCcceEEEeCcccc
Confidence 68999999999887544433321 34444443 5665554321 111222333455678899987665553
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=81.11 E-value=1 Score=43.87 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=60.0
Q ss_pred eeEEecccchhHHHhhhc-CCCeEEEEeccCCCCCchhHHh---h-ccchhhhc--------ccCCCCCCCCCccchhhc
Q 007645 443 RNIMDMNAFFGGFAAALT-SDPVWVMNVVPARKSSTLSVIY---D-RGLIGVYH--------DWCEPFSTYPRTYDLIHV 509 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~-~~~vwvmnv~p~~~~~~l~~i~---e-RGlig~~~--------~wce~f~typrtyDl~H~ 509 (595)
+.|||+.||+|||+-++. ...-.|.+|=... .-+..+- + .|+=..-| +|.+.+-.-.+.||+|=+
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~--~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAK--RSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCT--THHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCCH--HHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 589999999999986543 3333455542221 2232221 1 23311111 111111112367998875
Q ss_pred cCc-cccccCCCCCCCCCC----hhhhHHhhcccccCCcEEEEe------CChHHHHHHHHhHhccCceeEE
Q 007645 510 SGI-ESLIKNPGSNKNSCS----LVDLMVEMDRMLRPEGTVVVR------DSPEVIDKVSRIANTVRWTAAV 570 (595)
Q Consensus 510 ~~~-~s~~~~~~~~~~~c~----~~~~llEmdRiLRP~G~~i~r------d~~~~~~~~~~~~~~~~W~~~~ 570 (595)
+-- |+.-+ +..=. ..+|+-..=++|+|||.+++. +..++...|.+.+..-.+....
T Consensus 224 DPP~f~~~~-----~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~ 290 (317)
T d2b78a2 224 DPPSFARNK-----KEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLD 290 (317)
T ss_dssp CCCCC----------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEE
T ss_pred cChhhccch-----hHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHHcCCeEEE
Confidence 521 22111 11111 224666666899999999996 2334445555555444444433
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=81.01 E-value=0.094 Score=45.75 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=49.7
Q ss_pred eeEEecccchhHHHhhhcCCCeEEEEeccCCCC-CchhHHhh----ccchh---hhcccCCC-CCCCCCccchhhccCcc
Q 007645 443 RNIMDMNAFFGGFAAALTSDPVWVMNVVPARKS-STLSVIYD----RGLIG---VYHDWCEP-FSTYPRTYDLIHVSGIE 513 (595)
Q Consensus 443 RnvmDm~~~~g~faa~l~~~~vwvmnv~p~~~~-~~l~~i~e----RGlig---~~~~wce~-f~typrtyDl~H~~~~~ 513 (595)
.+|+|++||.|+|+....++..= +|.=.+.. +.+..+-+ -|+-. +++.=+.. +......||+|.++--|
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 47999999999999644434331 44444544 33332221 12222 12111111 12233789999876543
Q ss_pred ccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe
Q 007645 514 SLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR 548 (595)
Q Consensus 514 s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r 548 (595)
.... ... .-+.+.+ .++|+|+|.+|+.
T Consensus 94 ~~~~------~~~-~l~~i~~-~~~L~~~g~iiiE 120 (152)
T d2esra1 94 AKET------IVA-TIEALAA-KNLLSEQVMVVCE 120 (152)
T ss_dssp HHHH------HHH-HHHHHHH-TTCEEEEEEEEEE
T ss_pred ccch------HHH-HHHHHHH-CCCcCCCeEEEEE
Confidence 3111 001 1123333 4899999999985
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=80.46 E-value=0.88 Score=42.74 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=88.5
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCeeeEEecccchh--HHHhhhcCCCeEEEEeccCCCC--Cchh-HHhhccch--hhh
Q 007645 418 DSRRWRRRVAYYKNTLNVKLGTPAIRNIMDMNAFFG--GFAAALTSDPVWVMNVVPARKS--STLS-VIYDRGLI--GVY 490 (595)
Q Consensus 418 d~~~w~~~v~~y~~~l~~~~~~~~~RnvmDm~~~~g--~faa~l~~~~vwvmnv~p~~~~--~~l~-~i~eRGli--g~~ 490 (595)
..+.|.+++-.=.. +.+.+....-.+++|+|+|-| |.--|+...+. -+..+=.... +=|. ++-+=||- =++
T Consensus 48 ~~~i~~rHi~DSl~-~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~-~v~Lves~~KK~~FL~~v~~~L~L~n~~i~ 125 (239)
T d1xdza_ 48 KKEVYLKHFYDSIT-AAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHL-HVTIVDSLNKRITFLEKLSEALQLENTTFC 125 (239)
T ss_dssp HHHHHHHTHHHHHG-GGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTC-EEEEEESCHHHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHHHhccchhh-hhhhhcccCCCeEEeecCCCchHHHHHHHhCCCc-cceeecchHHHHHHHHHHHHHhCCCCcEEE
Confidence 34677776655333 223344345678999999843 33333333222 2222222222 2233 45555773 356
Q ss_pred cccCCCCCC---CCCccchhhccCccccccCCCCCCCCCChhhhHHhhcccccCCcEEEEe---CChHHHHHHHHhHhcc
Q 007645 491 HDWCEPFST---YPRTYDLIHVSGIESLIKNPGSNKNSCSLVDLMVEMDRMLRPEGTVVVR---DSPEVIDKVSRIANTV 564 (595)
Q Consensus 491 ~~wce~f~t---yprtyDl~H~~~~~s~~~~~~~~~~~c~~~~~llEmdRiLRP~G~~i~r---d~~~~~~~~~~~~~~~ 564 (595)
|+--|.+.. +.-.||+|=|- -| .++..+|-=....|+|+|.+++- +-.+.+++.++..+.+
T Consensus 126 ~~R~E~~~~~~~~~~~~D~v~sR-Av------------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~ 192 (239)
T d1xdza_ 126 HDRAETFGQRKDVRESYDIVTAR-AV------------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTL 192 (239)
T ss_dssp ESCHHHHTTCTTTTTCEEEEEEE-CC------------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHT
T ss_pred eehhhhccccccccccceEEEEh-hh------------hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHc
Confidence 777776643 34579988742 22 34555666678999999999995 4445577777777777
Q ss_pred CceeEEe-ccC-CCCCCCceEEEEEec
Q 007645 565 RWTAAVH-DKE-PGSNGREKILVATKS 589 (595)
Q Consensus 565 ~W~~~~~-~~~-~~~~~~~~~l~~~K~ 589 (595)
.++.... .-+ +.....-.+++.+|.
T Consensus 193 ~~~~~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 193 GGELENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp TEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred CCEEEEEEEEeCCCCCCCEEEEEEEEC
Confidence 7776432 111 222233457777764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.36 E-value=2.3 Score=36.84 Aligned_cols=102 Identities=16% Similarity=0.029 Sum_probs=62.0
Q ss_pred HhhccccCCCcceEEEECCCCc-HHHHHHhhcCCceEEEEeecCcHHHHHHHHHcCCCeEEEEcccccC------CCCCC
Q 007645 191 KQYIPITGGTLRTALDMGCGVA-SFGGSMLSENILTLSFAPRDSHKAQIQFALERGIPAFVAMLGTRRL------PFPAF 263 (595)
Q Consensus 191 ~~~l~~~~g~~r~VLDIGCGtG-~~a~~La~~gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~~~L------Pfpd~ 263 (595)
.+....++|+ +||=+|+|.+ ..+..++.. .-...+..+|.++...+.+++.|....+...+..+. -...+
T Consensus 21 ~~~~~vk~Gd--tVlV~GaGG~G~~~~~~~~~-~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 21 VKVAKVTQGS--TCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp HTTTCCCTTC--EEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred HHhhCCCCCC--EEEEECCCCcHHHHHHHHHH-cCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcC
Confidence 3444455555 8999999754 344444444 223467778999999999999987644432222111 02235
Q ss_pred ceeEEEEcCCCcccccCHHHHHHHHHhhcCCC-cEEEEEc
Q 007645 264 SFDIVHCSRCLIPFTAYNATYLIEVDRLLRPG-GYLVISG 302 (595)
Q Consensus 264 sFDlV~~s~vL~h~~~d~~~~L~Ei~RvLRPG-G~lvls~ 302 (595)
.+|+|+-.... ...+......+++| |.+++..
T Consensus 98 G~D~vid~~G~-------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 98 GVDFSFEVIGR-------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp CBSEEEECSCC-------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CCCEEEecCCc-------hhHHHHHHHHHhcCCcceEEec
Confidence 78998854322 34566677788886 5666554
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| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.27 E-value=1.4 Score=39.05 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=58.8
Q ss_pred ceEEEECCC--CcHHHHHHhhc-CCceEEEEeecCcHHHHHHHHHcCCCeEEEEccc--c-cCCCCCCceeEEEEcCCCc
Q 007645 202 RTALDMGCG--VASFGGSMLSE-NILTLSFAPRDSHKAQIQFALERGIPAFVAMLGT--R-RLPFPAFSFDIVHCSRCLI 275 (595)
Q Consensus 202 r~VLDIGCG--tG~~a~~La~~-gv~~~~v~~vD~s~~~l~~A~erg~~~~~~~~d~--~-~LPfpd~sFDlV~~s~vL~ 275 (595)
.+||=.|++ .|+++..|++. |..++ ....+++-.+.+++.|....+-.-+. + ......+.+|+|+-.-.
T Consensus 33 ~~VLI~gaaGGVG~~aiQlak~~Ga~Vi---at~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg-- 107 (176)
T d1xa0a2 33 GPVLVTGATGGVGSLAVSMLAKRGYTVE---ASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG-- 107 (176)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEE---EEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST--
T ss_pred CEEEEEeccchHHHHHHHHHHHcCCceE---EecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC--
Confidence 379988854 56888888866 55443 33455666778888877644322111 1 11234568999884321
Q ss_pred ccccCHHHHHHHHHhhcCCCcEEEEEcC
Q 007645 276 PFTAYNATYLIEVDRLLRPGGYLVISGP 303 (595)
Q Consensus 276 h~~~d~~~~L~Ei~RvLRPGG~lvls~p 303 (595)
+..+.+..++|+|||+++..+.
T Consensus 108 ------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 108 ------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp ------TTTHHHHHHTEEEEEEEEECSC
T ss_pred ------chhHHHHHHHhCCCceEEEeec
Confidence 2358889999999999999876
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