Citrus Sinensis ID: 007653

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
Protein Sequence
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQWQMG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATEnmknmrpedlKCAAEqlthtppeeVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNlqgihsseGRTLLLACSLNsmscylktkqYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDlsnahevspddgtIADVLRDAKEILMkedghhgprgllIEEITEEvgavssgshrssgteylarekadpsksehsangrgsstkpeflpdlkddpesIRSFQNFisnanpdsfaalsggkageispDMFKAVSIMINKMSPEELQRMIQIASsfqgenphangdsietnfngfrpgstppnmrpdmlKTASDVMSKMSSEDLQKMFEMESTLKNKvagqastavdpkgissdpgprlsesrersavngnnvvgqpssggffpnsrtnqqssfspstADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGvqgvkktknwllgkpvmsegsFWYYLRFYSNNIHGWQWQMG
Flexible Loop (DISEMBL)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSdlsnahevspddgtIADVLRDAKEILMkedghhgprgLLIEEITEEVgavssgshrssgTEYLarekadpsksehsangrgsstkpeflpDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVagqastavdpkgissdpgprlSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQrgvqgvkktknwllgkpvMSEGSFWYYLRFYSNNIHGWQWQMG
Low Complexity Region (SEG)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQWQMG
Disordered region (IsUnstruct)
*********************************************************************************************AQMNYEFNAAKMLK**GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE********************DVLR****I************LLI*******************************************************************************************AVSIM********************************************************************************************************************************************************************************************************NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQW***
Disordered Region (DISOPRED)
****************************************************EDLKCAAEQ***TPPEEVAEIGEKLAN**********************AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR******************************************************************************************************************************************************************************************************************************************************************************************************************************LDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQWQM*
Disordered Region (DISEMBL)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV*************************************KPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK******************************VNGNNVVGQPSSGGFFPNSR*************LQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQWQMG
Disordered Region (DISPRO)
*****MDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT********************************************LPDLKDD*ESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTL**********************************************************************************************************************SSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQWQMG
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQWQMG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	594	2.2.26 [Sep-21-2011]
B7ZWR6	554	Outer envelope protein 61	yes	no	0.890	0.954	0.593	1e-174
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.193	0.205	0.355	4e-14
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.212	0.217	0.325	4e-13
Q9LDC0	365	Peptidyl-prolyl cis-trans	no	no	0.223	0.364	0.333	1e-12
A4K2V0	309	Mitochondrial import rece	yes	no	0.242	0.466	0.320	1e-12
Q15785	309	Mitochondrial import rece	yes	no	0.242	0.466	0.314	2e-12
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.210	0.226	0.335	4e-12
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.191	0.313	0.353	2e-11
Q5RAP0	929	Protein unc-45 homolog A	no	no	0.195	0.124	0.336	2e-10
Q3KRD5	309	Mitochondrial import rece	yes	no	0.163	0.313	0.372	2e-10

>sp|B7ZWR6|OEP61_ARATH Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1

 Score =  612 bits (1577), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 337/568 (59%), Positives = 410/568 (72%), Gaps = 39/568 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct: 1   MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct: 61  QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct: 241 IEDITEE-NNVTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P A   +  +  NGF P        PDMLK ASD+M KMS E+ ++MF M S+L  K   
Sbjct: 347 PFA--PTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSL--KANA 395

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
            AST+    G +    PR  ES   S  +  N    P S GF P       S  S   AD
Sbjct: 396 PASTSY---GNAEASEPR--ESLGASGSSSGNSFVAPRS-GFEP-------SIPSAPPAD 442

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           LQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+MSEQFG+KLS+ED  K QQ M+SLS + 
Sbjct: 443 LQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDA 502

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGK 567
           L++MM WADR Q G++  KK K WL GK
Sbjct: 503 LEKMMRWADRAQTGMEKAKKAKKWLFGK 530

Chaperone receptor mediating Hsp70-dependent protein targeting to chloroplasts. Interacts specifically with some chloroplast precursors, but not with mitochondrial precursors. Able to select precursors for delivery to the chloroplast translocase independently of Hsp70.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 6/121 (4%)

Query: 99  EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNS 152
           +  AA   K++GN L+  G+++ A ++Y  A K ++   S       + + L + C+LN+
Sbjct: 397 KIEAAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNN 456

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +C LK K Y +  K+ ++VL  D++NVKALYRR QAY  +  LE A  D+  A E+ P+
Sbjct: 457 AACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPE 516

Query: 213 D 213
           +
Sbjct: 517 N 517

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSM 153
             AA   K++GN L+  G+++ A ++Y    K ++   +       + + L +AC+LN  
Sbjct: 407 IEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDA 466

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +C LK K Y E  K+ ++VL  D++NVKA+YRR  AY +   L+ A  D+  A E+ PD+
Sbjct: 467 ACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526

Query: 214 GTIADVLRDAKE 225
             +    +  KE
Sbjct: 527 KEVKIEYKKLKE 538

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQGIHSSE 140
           +AR D  +     AA   K  GN L+ E +   A+Q+Y +A           L G +   
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224

Query: 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200
              +   C LN  +C +K K+YDE I   + VL  + KN KAL+RRG+A  ++G+++ A 
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284

Query: 201 SDLSNAHEVSPDDGTIADVLR 221
            D   A + +PDD  I   LR
Sbjct: 285 DDFRKAQKYAPDDKAIRRELR 305

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 71  AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 128
           +E  +++A +  +E    + R+ +  + E   AK+LK++GNEL  +G    A++KY   L
Sbjct: 163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KAKVLKEEGNELVKKGNHKKAIEKYSESL 220

Query: 129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188
              NL+    S           N   CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct: 221 LCSNLESATYS-----------NRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query: 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
           A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct: 270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|Q15785|TOM34_HUMAN Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 71  AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 128
           +E  +++A +  +E    + R+ +  + E   A++LK++GNEL  +G    A++KY   L
Sbjct: 163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KARVLKEEGNELVKKGNHKKAIEKYSESL 220

Query: 129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188
              NL+    S           N   CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct: 221 LCSNLESATYS-----------NRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query: 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
           A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct: 270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Homo sapiens (taxid: 9606)

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGR 142
           R   D     +  AA   K++GN  +  G++S A ++Y  A K ++   S       + +
Sbjct: 386 RESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAK 445

Query: 143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202
            L +AC+LN  +C LK K Y +  K+ ++VL  ++ NVKALYRR QAY ++  L+ A  D
Sbjct: 446 ALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFD 505

Query: 203 LSNAHEVSPDD 213
           +  A E+ P++
Sbjct: 506 VKKALEIDPNN 516

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 16/130 (12%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSSEGR--TLLLACSLNS 152
           A  LK  GN  + +G  +NA +KYL A + L              EG+   + + C LN 
Sbjct: 208 ATHLKDIGNTYFKKGDHANAAKKYLKAIRYLNEKPAFDENDPKELEGKFAAIKIPCYLNR 267

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNV------KALYRRGQAYKDIGRLEEAVSDLSNA 206
             C LK  +Y EC+KV + VL YD+K +      KA +RRG A  +    E A+ D   A
Sbjct: 268 SMCALKLGEYSECVKVTTTVLEYDSKYLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEKA 327

Query: 207 HEVSPDDGTI 216
           HE  P+D  I
Sbjct: 328 HEKDPEDAGI 337

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           ++ + L+K+GNEL+  G +  AL  Y  A     G+ ++     +L    N  +CYLK +
Sbjct: 4   SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACYLKLE 57

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + L
Sbjct: 58  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 117

Query: 221 RD 222
           R+
Sbjct: 118 RN 119

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q3KRD5|TOM34_RAT Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 21/118 (17%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS------CY 156
           A++LK++GNEL  +G    A++KY            SE    LL  SL S +      C+
Sbjct: 193 ARVLKEEGNELVKKGNHKKAIEKY------------SES---LLFSSLESATYSNRALCH 237

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           L  KQY E  K  +E L  D KNVKA YRR QAYK +   + +++D+S+  ++ P +G
Sbjct: 238 LVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNG 295

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
224102985	588	predicted protein [Populus trichocarpa]	0.949	0.959	0.671	0.0
225436083	590	PREDICTED: outer envelope protein 61, ch	0.944	0.950	0.633	0.0
296084010	584	unnamed protein product [Vitis vinifera]	0.941	0.957	0.634	0.0
255549607	595	fk506 binding protein, putative [Ricinus	0.957	0.956	0.643	0.0
224132120	559	predicted protein [Populus trichocarpa]	0.898	0.955	0.620	0.0
356517663	581	PREDICTED: uncharacterized protein LOC10	0.952	0.974	0.592	0.0
356544786	590	PREDICTED: uncharacterized protein LOC10	0.939	0.945	0.593	0.0
449448844	569	PREDICTED: outer envelope protein 61, ch	0.920	0.961	0.580	1e-178
30688239	554	tetratricopeptide repeat domain-containi	0.890	0.954	0.593	1e-172
26452527	554	unknown protein [Arabidopsis thaliana]	0.890	0.954	0.593	1e-172

>gi|224102985|ref|XP_002312880.1| predicted protein [Populus trichocarpa] gi|222849288|gb|EEE86835.1| predicted protein [Populus trichocarpa]

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/573 (67%), Positives = 460/573 (80%), Gaps = 9/573 (1%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDPE+I++AQEQM+RM+P DFARIQQQ+M+NPEL+++A+E M+NMRPEDLK AAE
Sbjct: 1   MFNGMMDPELIKIAQEQMSRMTPADFARIQQQVMSNPELVKMASEGMRNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ NASPEEIA M AR DAQ  YE NAA+MLKKQGNEL+S+G+F 
Sbjct: 61  QLKHTRPEEMAEIGEKMINASPEEIAAMHARADAQATYEMNAAQMLKKQGNELHSQGKFK 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A QKYLLAK+NL+GI SS+GRTLLLACSLN MSCYLKTKQYDECIK GSEVL YDAKN 
Sbjct: 121 DASQKYLLAKQNLKGIPSSKGRTLLLACSLNLMSCYLKTKQYDECIKEGSEVLGYDAKNA 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+++G+LE AVSDL  AHEVSPDD TIAD+LR+A+E L +E G+H PRG++
Sbjct: 181 KALYRRGQAYRELGQLEVAVSDLRKAHEVSPDDETIADILRNAEERLAQEGGYHAPRGVI 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IEEITEE   VS     SS     ARE  D SKS   A    S++ PE L  LKDDPE++
Sbjct: 241 IEEITEEAETVSENLKSSS-----ARESVDTSKSGREARSGSSTSNPEPLEALKDDPEAM 295

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           RSFQNFISNANP++ AALSG KAGE+SP+MFK  S MI KM PEELQ+M+Q+ASSFQGEN
Sbjct: 296 RSFQNFISNANPETLAALSGAKAGEVSPEMFKTASNMIGKMPPEELQKMLQMASSFQGEN 355

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLK-NKVA 419
           P   G S ++ FNGFRPG+ PPN+ PDMLKTASD+MSKM SE+LQKMFEM S+L+ N +A
Sbjct: 356 PLTAGSS-DSGFNGFRPGAVPPNVTPDMLKTASDMMSKMPSEELQKMFEMASSLRGNGLA 414

Query: 420 GQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQ-QSSFSPST 478
             A+ A++ +G S     + +E++E  AVNGNN + + SS G F +S  N   SSF  ST
Sbjct: 415 PAAAAALNTEGPSLSARLKPTETQEYFAVNGNNGISETSSSGDFLSSSRNAPPSSFPAST 474

Query: 479 ADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSL 537
           +D+Q QMRNQM DPAM+QMF+SM+KN+SPEMMANMSEQFGIKLS+ED  K QQ MSS S 
Sbjct: 475 SDMQEQMRNQMKDPAMRQMFTSMMKNLSPEMMANMSEQFGIKLSQEDAAKAQQAMSSFSP 534

Query: 538 NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVM 570
            DLD+MM WADR+QRG +G KK KNWLLG+P M
Sbjct: 535 EDLDKMMRWADRIQRGAEGAKKAKNWLLGRPGM 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436083|ref|XP_002272729.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Vitis vinifera]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/571 (63%), Positives = 448/571 (78%), Gaps = 10/571 (1%)

Query: 4   GMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLT 63
            MMDPE+IRLAQEQMNRMSP +FA+IQ+QMMANPELMR+A+E M NMRPEDL+ AAEQL 
Sbjct: 5   AMMDPELIRLAQEQMNRMSPTEFAKIQEQMMANPELMRMASETMMNMRPEDLRNAAEQLK 64

Query: 64  HTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL 123
           +  PEE+AEIGEK+AN+SPEEIA MRAR D+Q+ Y+ NAA+MLKKQGNEL+++G+F+ A 
Sbjct: 65  YARPEEMAEIGEKMANSSPEEIAAMRARADSQITYQINAAQMLKKQGNELHNKGKFNEAS 124

Query: 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183
           QKYLLAKKNL GI +S+GRTLLLACSLN MSCYLKTKQYDECI+ G+EVLAYD KNVKAL
Sbjct: 125 QKYLLAKKNLTGIPASKGRTLLLACSLNLMSCYLKTKQYDECIQEGTEVLAYDPKNVKAL 184

Query: 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE 243
           YRRGQAYK++G+L +AVSDL+ A+ VSP+D TI +VLRD KE L+K+ G    R L+IEE
Sbjct: 185 YRRGQAYKELGQLNDAVSDLNKAYGVSPEDETIGEVLRDVKEKLIKQGGEPAQRKLVIEE 244

Query: 244 ITEEVGAVSSGSHRSSGTEYLA---REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           ITEE  AVS+G+ + S  E      +E     KS+   N    +T  E+L  LKDDPE+I
Sbjct: 245 ITEE--AVSTGNGKCSAMENCVTQPQENGACRKSQSGTNSEDLTTNSEYLQTLKDDPEAI 302

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           RSFQNF+SNA+PD+ AALS GK+GE SPDMFK  S MI+KMSPEELQRM+Q+ASSFQ EN
Sbjct: 303 RSFQNFMSNADPDTLAALSAGKSGEYSPDMFKTASNMISKMSPEELQRMVQMASSFQREN 362

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
            +    S+++NF  FRPGS PPN+ P+MLKTA+D+M+ MS+E+ QKM EM S+L+ + + 
Sbjct: 363 EYFPKGSLDSNFGSFRPGSVPPNLTPEMLKTATDMMNNMSTEERQKMLEMASSLRARDSV 422

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
               +++  G+SS    +  E+RE SAVNGNN +G+ SS G F N R   QSSF PSTA 
Sbjct: 423 STPASLNTDGLSS----KFPETRENSAVNGNNDMGESSSHGSFSNLRGGSQSSFQPSTAG 478

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           +Q QMRNQM DPAM+QMF+SM+KNMSPEMM NM EQFG+KLSRED EK QQ +SS++  +
Sbjct: 479 MQEQMRNQMKDPAMRQMFTSMIKNMSPEMMTNMGEQFGVKLSREDAEKAQQALSSITPEN 538

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGKPVM 570
           LDRMM WAD +Q+G +  +K KNWLLGKP M
Sbjct: 539 LDRMMRWADGIQKGAERARKAKNWLLGKPGM 569

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084010|emb|CBI24398.3| unnamed protein product [Vitis vinifera]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/569 (63%), Positives = 447/569 (78%), Gaps = 10/569 (1%)

Query: 6   MDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHT 65
           MDPE+IRLAQEQMNRMSP +FA+IQ+QMMANPELMR+A+E M NMRPEDL+ AAEQL + 
Sbjct: 1   MDPELIRLAQEQMNRMSPTEFAKIQEQMMANPELMRMASETMMNMRPEDLRNAAEQLKYA 60

Query: 66  PPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK 125
            PEE+AEIGEK+AN+SPEEIA MRAR D+Q+ Y+ NAA+MLKKQGNEL+++G+F+ A QK
Sbjct: 61  RPEEMAEIGEKMANSSPEEIAAMRARADSQITYQINAAQMLKKQGNELHNKGKFNEASQK 120

Query: 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185
           YLLAKKNL GI +S+GRTLLLACSLN MSCYLKTKQYDECI+ G+EVLAYD KNVKALYR
Sbjct: 121 YLLAKKNLTGIPASKGRTLLLACSLNLMSCYLKTKQYDECIQEGTEVLAYDPKNVKALYR 180

Query: 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT 245
           RGQAYK++G+L +AVSDL+ A+ VSP+D TI +VLRD KE L+K+ G    R L+IEEIT
Sbjct: 181 RGQAYKELGQLNDAVSDLNKAYGVSPEDETIGEVLRDVKEKLIKQGGEPAQRKLVIEEIT 240

Query: 246 EEVGAVSSGSHRSSGTEYLA---REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS 302
           EE  AVS+G+ + S  E      +E     KS+   N    +T  E+L  LKDDPE+IRS
Sbjct: 241 EE--AVSTGNGKCSAMENCVTQPQENGACRKSQSGTNSEDLTTNSEYLQTLKDDPEAIRS 298

Query: 303 FQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPH 362
           FQNF+SNA+PD+ AALS GK+GE SPDMFK  S MI+KMSPEELQRM+Q+ASSFQ EN +
Sbjct: 299 FQNFMSNADPDTLAALSAGKSGEYSPDMFKTASNMISKMSPEELQRMVQMASSFQRENEY 358

Query: 363 ANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQA 422
               S+++NF  FRPGS PPN+ P+MLKTA+D+M+ MS+E+ QKM EM S+L+ + +   
Sbjct: 359 FPKGSLDSNFGSFRPGSVPPNLTPEMLKTATDMMNNMSTEERQKMLEMASSLRARDSVST 418

Query: 423 STAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ 482
             +++  G+SS    +  E+RE SAVNGNN +G+ SS G F N R   QSSF PSTA +Q
Sbjct: 419 PASLNTDGLSS----KFPETRENSAVNGNNDMGESSSHGSFSNLRGGSQSSFQPSTAGMQ 474

Query: 483 -QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLD 541
            QMRNQM DPAM+QMF+SM+KNMSPEMM NM EQFG+KLSRED EK QQ +SS++  +LD
Sbjct: 475 EQMRNQMKDPAMRQMFTSMIKNMSPEMMTNMGEQFGVKLSREDAEKAQQALSSITPENLD 534

Query: 542 RMMLWADRVQRGVQGVKKTKNWLLGKPVM 570
           RMM WAD +Q+G +  +K KNWLLGKP M
Sbjct: 535 RMMRWADGIQKGAERARKAKNWLLGKPGM 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549607|ref|XP_002515855.1| fk506 binding protein, putative [Ricinus communis] gi|223545010|gb|EEF46524.1| fk506 binding protein, putative [Ricinus communis]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/575 (64%), Positives = 453/575 (78%), Gaps = 6/575 (1%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDPE+I++AQEQM+RMSP +FA+IQQQMMANPELM++A+E MKNMRPEDL+ AAE
Sbjct: 1   MFNGMMDPELIKIAQEQMSRMSPAEFAKIQQQMMANPELMKMASEGMKNMRPEDLRQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE +AEIG+K+ANASPEEIA+M AR+DAQ+ YE NAA+MLKKQGNEL+++GRF 
Sbjct: 61  QLKHTRPEVMAEIGDKMANASPEEIASMHARVDAQITYELNAAQMLKKQGNELHNQGRFK 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +ALQKYLLAKKNL+GI SS+GR+LLLACSLN MSCYLKT+QYDECIK GSEVL YDAKNV
Sbjct: 121 DALQKYLLAKKNLKGIPSSQGRSLLLACSLNLMSCYLKTRQYDECIKEGSEVLGYDAKNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAYK++G LE+AVSDLS AHEVSPDD TI+DVLR+AKE +  E G+H   GL+
Sbjct: 181 KALYRRGQAYKELGHLEDAVSDLSKAHEVSPDDETISDVLREAKERMANEGGNHRQSGLV 240

Query: 241 IEEITEEVGAVSS---GSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDP 297
           IEE+T+E    SS   GS R +      RE  D    +   NG G +   E L  LKDDP
Sbjct: 241 IEELTKEDDVASSQNLGSSRETSV-LQPRESVDARNMKSGTNGSGLTMNSESLQALKDDP 299

Query: 298 ESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQ 357
           E+IR+FQNFISNA+P++ +A+SG KAGE+SPDMFK  S MI+KMSP+ELQ+M+Q+ASSF+
Sbjct: 300 EAIRTFQNFISNADPETLSAVSGAKAGELSPDMFKTASNMISKMSPQELQKMLQMASSFE 359

Query: 358 GENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK 417
           G N  A   S +++FN FRPGS PPN+ PDMLK A+D++SKM  E+LQKMFEM S+L+  
Sbjct: 360 GGNQFAASSSSDSSFNSFRPGSVPPNVTPDMLKVATDMVSKMPPEELQKMFEMASSLQGT 419

Query: 418 VAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQ-PSSGGFFPNSRTNQQSSFSP 476
                + A+    ++ D G +L+  RE  AVN +N+ G+  SS  FF ++R   Q SF  
Sbjct: 420 DTLPVAGALKTNALNLDNGSKLTGQRENCAVNRSNMNGESSSSNDFFSSTRNASQPSFPS 479

Query: 477 STADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSL 535
           STAD+Q Q+RNQM DPAM+QMF+SM+KNMSPEMMANMSEQFG+KLS ED  K QQ MSSL
Sbjct: 480 STADMQEQVRNQMKDPAMRQMFTSMMKNMSPEMMANMSEQFGLKLSMEDAAKAQQAMSSL 539

Query: 536 SLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVM 570
           S  DLDRMM WAD++QRG +G KK KNWLLG+  M
Sbjct: 540 SPEDLDRMMRWADKIQRGAEGAKKAKNWLLGRSGM 574

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132120|ref|XP_002328190.1| predicted protein [Populus trichocarpa] gi|222837705|gb|EEE76070.1| predicted protein [Populus trichocarpa]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/574 (62%), Positives = 432/574 (75%), Gaps = 40/574 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDPE+I++AQEQM+RM+P DFARIQQQ+M+NPEL+R+A+E+MKNM+P+DLK AAE
Sbjct: 1   MFNGMMDPELIKIAQEQMSRMTPADFARIQQQVMSNPELVRMASESMKNMKPDDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ NASPEEIA MRAR D Q  YE NAA+MLKKQGNEL+S+G+F+
Sbjct: 61  QLKHTHPEEMAEIGEKMMNASPEEIAAMRARADVQATYEINAAQMLKKQGNELHSQGKFN 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +ALQKYLLAK+NL+GI SS+GRTL LACSLN MSCYLKTKQY+ECIK GSEVL YDA NV
Sbjct: 121 DALQKYLLAKQNLKGITSSKGRTLWLACSLNLMSCYLKTKQYNECIKEGSEVLGYDANNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+++G+LE+AVSDL  AHEVSPD+ TIAD+LR+A+E L +E GHH PRG+ 
Sbjct: 181 KALYRRGQAYRELGQLEDAVSDLRKAHEVSPDEETIADILRNAEETLAREGGHHAPRGI- 239

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLA---REKADPSKSEHSANGRGSSTKPEFLPDLKDDP 297
                             + TEY     RE AD SKS        S+T  E L  LKDDP
Sbjct: 240 ------------------TSTEYQVKQPRESADISKSGKGGRNGSSATNSEPLEALKDDP 281

Query: 298 ESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQ 357
           E++RSFQNFISNA+P++ AAL+G KAGE+SPDM KA S MI KMSPEELQRM+Q+ASSFQ
Sbjct: 282 EAMRSFQNFISNADPETLAALNGAKAGEVSPDMVKAASNMIGKMSPEELQRMLQMASSFQ 341

Query: 358 GENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK 417
           G  P   G S +++FNGF+ G  PPN+ PDML+TASD M+KMS E+LQKMFEM ++L+  
Sbjct: 342 GATPFTAGGSSDSSFNGFKSGVVPPNVTPDMLRTASDTMNKMSPEELQKMFEMATSLR-- 399

Query: 418 VAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPS 477
             G  S       +++D          RS++  +             N+     SSF  S
Sbjct: 400 --GNGSVPAVASALNTD----------RSSLGASETSSSRDFFSSSRNAPP---SSFPAS 444

Query: 478 TADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLS 536
           T+D+Q QMRNQM DPAM+QMF+SM+KNMSPEMMANMSEQFGIKLS+ED  K QQ M+SLS
Sbjct: 445 TSDMQEQMRNQMKDPAMQQMFTSMMKNMSPEMMANMSEQFGIKLSQEDAAKAQQAMASLS 504

Query: 537 LNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVM 570
             DLD+MM WADR+QRG +G KK KNWLLG+P M
Sbjct: 505 PEDLDKMMRWADRIQRGAEGAKKAKNWLLGRPGM 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517663|ref|XP_003527506.1| PREDICTED: uncharacterized protein LOC100800315 [Glycine max]

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/582 (59%), Positives = 436/582 (74%), Gaps = 16/582 (2%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDP+++R+AQEQM+RMSP + ARIQQQMM+NPELMR+A+E+MKNM  ED K AAE
Sbjct: 1   MFNGMMDPDLMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ANASPEE+A MR+R+DAQ+ Y+ +AA+MLKKQGN+L+++GR++
Sbjct: 61  QLKHTRPEEMAEIGEKMANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYN 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +AL+KY+LAK+N++ + S + R LLLACSLN MSCYLKT+QY+EC+K GSEVLAYDAKN+
Sbjct: 121 DALKKYILAKENIKEVPSFQSRKLLLACSLNLMSCYLKTRQYNECVKEGSEVLAYDAKNL 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAYK++G L++AVSDLS A EVSPDD TIA++LRDAKE L  + G H P  L+
Sbjct: 181 KALYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTIAELLRDAKEKLAMDGGEHAPGRLV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IEEITE+   V SGS     T    ++  D SKS  +AN     T  + L  LK DPE++
Sbjct: 241 IEEITED---VPSGSSSLEQTVVQPKKSGDSSKSYSTANNGNPKTNADSLDALKKDPEAV 297

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           RSFQNFISN +PD  A+L+ G+  ++SPDM K  S M++KMSPEELQRM+ +ASSFQG+N
Sbjct: 298 RSFQNFISNTDPDMLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQRMLDMASSFQGDN 357

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P   G S +++FN   PGS PPN+ PDM K ASD++SKM +++L++MFEM S+LK K + 
Sbjct: 358 PFFRGGSPDSSFN---PGSMPPNVTPDMFKAASDMISKMPADELKRMFEMASSLKGKEST 414

Query: 421 QASTAVD--PKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPST 478
             + AVD   + +S    P        S+ NG    G+ SS   F N R   QS+F  S+
Sbjct: 415 PLAAAVDENERNVSRSNLP-------SSSTNGTTAFGESSSHNVFSNMRNASQSNFPSSS 467

Query: 479 ADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSL 537
            DLQ QMRNQM DPAM++MFSSMVKNMSPEMMANM EQFG+KLS  +  K  Q MSSLS 
Sbjct: 468 TDLQEQMRNQMKDPAMRKMFSSMVKNMSPEMMANMGEQFGVKLSPGEAAKAHQAMSSLSP 527

Query: 538 NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVMSEGSFWYYL 579
             LD+MMLWADR+QRGV+  +KTKNWLLGKP M    F   L
Sbjct: 528 ESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAIFMLIL 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544786|ref|XP_003540828.1| PREDICTED: uncharacterized protein LOC100793234 [Glycine max]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/581 (59%), Positives = 436/581 (75%), Gaps = 23/581 (3%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDP+++++AQEQM+RMSP + ARIQQQMM+NPELMR+A+E+MKNM  ED K AAE
Sbjct: 1   MFNGMMDPDLMKIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSAEDFKLAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ANASPEE+A MR+R+DAQ+ Y+ +AA+MLKKQGN+L+++GR++
Sbjct: 61  QLKHTRPEEMAEIGEKVANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYN 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +AL+KY+LAK+N++ + S + R LLLACSLN MSCYLKT QY+ECIK GSEVLAYDAKN+
Sbjct: 121 DALKKYMLAKENIKEVPSFQSRKLLLACSLNLMSCYLKTSQYNECIKEGSEVLAYDAKNL 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR--- 237
           KALYRRGQAYK++G L++AVSDLS A EVSPDD TI ++LRD KE L  E G H PR   
Sbjct: 181 KALYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTITELLRDTKEKLAMEGGEHAPRSIF 240

Query: 238 -----GLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPD 292
                G++ EEIT EV  V SGS        L ++  D SKS  +AN     TK + L  
Sbjct: 241 GIMHLGIVTEEIT-EVEDVPSGSSLKQSVVQL-KKSGDSSKSYSTANNGIPKTKTDSLDA 298

Query: 293 LKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQI 352
           LK DPE++RSFQNFISN +P + A+L+ G+  ++SPDM K  S M++KMSPEELQRM+ +
Sbjct: 299 LKKDPEAVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQRMLDM 358

Query: 353 ASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMES 412
           ASSFQG+NP   G S +++FN   PGS PPN+ PDM K ASD++SKM ++DL++MFEM S
Sbjct: 359 ASSFQGDNPIFRGGSPDSSFN---PGSMPPNVTPDMFKAASDMISKMPADDLKRMFEMAS 415

Query: 413 TLKNKVAGQASTAVD--PKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQ 470
           +LK K +   + AVD   + +S    P        S+ NG    G+ SS   F N R   
Sbjct: 416 SLKGKESTPLAAAVDENERNVSRSNLP-------SSSTNGTTAFGESSSHNVFSNMRNAS 468

Query: 471 QSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQ 529
           QS+F  S+A+LQ QMRNQM DPAM++MF+SMVKNMSPEMMANM EQFG+KLS E+  K Q
Sbjct: 469 QSNFPSSSANLQEQMRNQMKDPAMRKMFTSMVKNMSPEMMANMGEQFGVKLSPEEAAKAQ 528

Query: 530 QTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPVM 570
           Q MSSLS   LD+MMLWADR+QRGV+  +KTKNWLLGKP M
Sbjct: 529 QAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGM 569

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448844|ref|XP_004142175.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Cucumis sativus] gi|449503433|ref|XP_004162000.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Cucumis sativus]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 329/567 (58%), Positives = 415/567 (73%), Gaps = 20/567 (3%)

Query: 5   MMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTH 64
           MMDPE++RLAQEQM+RMSP DFA+IQQQMMANPELM++A+E+MKNMRP+D K AAEQL H
Sbjct: 1   MMDPELMRLAQEQMSRMSPADFAKIQQQMMANPELMKMASESMKNMRPDDFKYAAEQLKH 60

Query: 65  TPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124
           T PE++A+IGEK+ANASPEEIATMR R+DAQ NYE NAA+MLK QGN+L+S+G+F++A +
Sbjct: 61  TRPEDMAKIGEKMANASPEEIATMRTRVDAQANYELNAAEMLKAQGNKLHSQGKFNDASE 120

Query: 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184
           KYLLAK NL+GI SS+GRTLLLACSLN MSCYLKTKQY +CI+ GSEVLAYD++N KALY
Sbjct: 121 KYLLAKNNLKGISSSKGRTLLLACSLNLMSCYLKTKQYHDCIREGSEVLAYDSRNAKALY 180

Query: 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEI 244
           RRGQAYK++ + ++AVSDLS AHEVSPDD TIADVL DAK+ L ++ G + P+G++IEEI
Sbjct: 181 RRGQAYKELCQFQDAVSDLSKAHEVSPDDETIADVLSDAKKKLNEQGGGNVPKGVVIEEI 240

Query: 245 TEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQ 304
            EE   +S+ S  S   E +   K         A+    S   E L  L+DDPE+IRSFQ
Sbjct: 241 VEEDNPISTNSSVSKPPEVIDNSKI--------ADAYKKSINSESLQGLRDDPEAIRSFQ 292

Query: 305 NFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHAN 364
            F+SNA+PD+ AA++ GK+G ISPDM    S MI+KMSP ELQ M+++ASSFQ  NP   
Sbjct: 293 RFVSNADPDTLAAMNFGKSGGISPDMVATASNMISKMSPSELQDMLKLASSFQEANP-LK 351

Query: 365 GDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQAST 424
           GDS+  N +         NM P+ML +AS +MS M  EDLQ+MFE  S+LK   +   + 
Sbjct: 352 GDSLGPNLDS-------ANMTPEMLSSASRIMSSMPPEDLQRMFETASSLKRNESASGNG 404

Query: 425 AVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-Q 483
            V P    SD G +  ES++ S           SS        ++  S+   S+ D+Q Q
Sbjct: 405 NVPP---DSDTGSKSFESQQSSISGSRTTRNTSSSDALSNLRSSSSNSTIPTSSTDMQEQ 461

Query: 484 MRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRM 543
           MR+QM +PAM+QMF+SM+KNMSPEMMANMSEQFG+KLS ED  K Q+ +SS S  DLD+M
Sbjct: 462 MRSQMKNPAMQQMFTSMIKNMSPEMMANMSEQFGLKLSPEDAAKAQEAISSFSPEDLDKM 521

Query: 544 MLWADRVQRGVQGVKKTKNWLLGKPVM 570
           M WAD++QRGV+G KK KNWLLG+P M
Sbjct: 522 MRWADKIQRGVEGGKKAKNWLLGRPGM 548

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688239|ref|NP_680187.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|357580467|sp|B7ZWR6.1|OEP61_ARATH RecName: Full=Outer envelope protein 61, chloroplastic; AltName: Full=Tetratricopeptide repeat domain-containing protein 7 gi|219291100|gb|ACL13985.1| At5g21990 [Arabidopsis thaliana] gi|332005581|gb|AED92964.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 337/568 (59%), Positives = 410/568 (72%), Gaps = 39/568 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct: 1   MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct: 61  QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct: 241 IEDITEE-NNVTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P A   +  +  NGF P        PDMLK ASD+M KMS E+ ++MF M S+L  K   
Sbjct: 347 PFA--PTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSL--KANA 395

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
            AST+    G +    PR  ES   S  +  N    P S GF P       S  S   AD
Sbjct: 396 PASTSY---GNAEASEPR--ESLGASGSSSGNSFVAPRS-GFEP-------SIPSAPPAD 442

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           LQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+MSEQFG+KLS+ED  K QQ M+SLS + 
Sbjct: 443 LQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDA 502

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGK 567
           L++MM WADR Q G++  KK K WL GK
Sbjct: 503 LEKMMRWADRAQTGMEKAKKAKKWLFGK 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452527|dbj|BAC43348.1| unknown protein [Arabidopsis thaliana]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 337/568 (59%), Positives = 410/568 (72%), Gaps = 39/568 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct: 1   MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct: 61  QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct: 241 IEDITEEKN-VTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P A   +  +  NGF P        PDMLK ASD+M KMS E+ ++MF M S+L  K   
Sbjct: 347 PFA--PTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSL--KANA 395

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
            AST+    G +    PR  ES   S  +  N    P S GF P       S  S   AD
Sbjct: 396 PASTSY---GNAEASEPR--ESLGASGSSSGNSFVAPRS-GFEP-------SIPSAPPAD 442

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           LQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+MSEQFG+KLS+ED  K QQ M+SLS + 
Sbjct: 443 LQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDA 502

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGK 567
           L++MM WADR Q G++  KK K WL GK
Sbjct: 503 LEKMMRWADRAQTGMEKAKKAKKWLFGK 530

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	594
TAIR|locus:504956437	554	TPR7 "AT5G21990" [Arabidopsis	0.829	0.889	0.508	2.5e-120
UNIPROTKB|Q7XIM1	547	OJ1714_H10.131 "Putative uncha	0.809	0.879	0.393	8.2e-83
UNIPROTKB|Q7XRB1	392	OSJNBa0006B20.12 "cDNA clone:0	0.558	0.846	0.418	3.4e-61
UNIPROTKB|A8I9E1	580	TPR1 "Predicted chloroplast-ta	0.730	0.748	0.266	2.2e-31
TAIR|locus:2037650	164	TPR6 "AT1G58450" [Arabidopsis	0.212	0.768	0.335	1.5e-13
UNIPROTKB|Q2QXS0	370	LOC_Os12g05090 "Os12g0145500 p	0.269	0.432	0.323	7.6e-13
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.284	0.291	0.314	8.5e-13
UNIPROTKB|Q15785	309	TOMM34 "Mitochondrial import r	0.242	0.466	0.320	2.1e-12
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.223	0.227	0.35	3e-12
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.223	0.230	0.323	4.9e-12

TAIR|locus:504956437 TPR7 "AT5G21990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 267/525 (50%), Positives = 343/525 (65%)

Query:     1 MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
             MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct:     1 MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query:    61 QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
             QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct:    61 QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query:   121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
             +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct:   121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query:   181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
             KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct:   181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query:   241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
             IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct:   241 IEDITEE-NNVTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query:   301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
             R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct:   287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query:   361 PHANGDSIETNFNGFRPGSTPPNMRPDML-KTASDVMSKM--SSEDLQKMFEMESTLKNK 417
             P A   +  +  NGF P      +  DM+ K + +   +M   +  L+      ++  N 
Sbjct:   347 PFA--PTAPSTENGFTPTPDMLKLASDMMGKMSPEERERMFNMASSLKANAPASTSYGNA 404

Query:   418 VAGQASTAVDPKGISSDPG---PRLS-ESRERSAVNGN------NVVGQPSSGGFFPNSR 467
              A +   ++   G SS      PR   E    SA   +      N +  P+    F +  
Sbjct:   405 EASEPRESLGASGSSSGNSFVAPRSGFEPSIPSAPPADLQEQMRNQMKDPAMRQMFTSMI 464

Query:   468 TNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANM 512
              N       S ++   M+    D A  Q     + ++SP+ +  M
Sbjct:   465 KNMNPEMMASMSEQFGMKLSQEDAAKAQQ---AMASLSPDALEKM 506

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005829 "cytosol" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046967 "cytosol to ER transport" evidence=IGI

UNIPROTKB|Q7XIM1 OJ1714_H10.131 "Putative uncharacterized protein OJ1714_H10.131" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 207/526 (39%), Positives = 293/526 (55%)

Query:     5 MMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTH 64
             MMDPEM+RLAQEQM++MSP D AR+QQQ+++NP L+++A+E+MKNMR +D + AA+Q+  
Sbjct:     1 MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ 60

Query:    65 TPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124
             T P+E+ ++ EKLANA+PEE+A M+ + + QM+Y  + AKMLK+QGNEL+   ++S A  
Sbjct:    61 TRPDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAA 120

Query:   125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184
             KY LAK NL+ I S    +L L C+LN M+CYLKT+ ++ECI  GSEVL YD+ NVKA Y
Sbjct:   121 KYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSNVKAYY 180

Query:   185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED-GHHGPRGLLIEE 243
             RRGQAYK++G LE AV DLS AHE+SPDD TIA VLRDA+E L  E  G   P+G++IEE
Sbjct:   181 RRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKLAVEGKGAKHPKGVVIEE 240

Query:   244 ITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHS------ANGRGS----STKPEFLPDL 293
             + ++    SS S RSS   Y   +  +   S  S      ANG          PE +   
Sbjct:   241 VVDDASEPSS-SQRSSSPGYTVSQPPEEGNSRPSGSSSIDANGLSKLGMQGMSPELVKTA 299

Query:   294 KD-----DPESIRSFQNFISNANPDSFAALS-GGKAGEISPDMFKAVSIMINKMSPEELQ 347
              D      PE ++      S+ +  S +  + G    E+SP+MFK  S MI  MSP+ELQ
Sbjct:   300 SDMIGTMKPEELQKMFEAASSLHGTSSSPPNLGPNMPEMSPEMFKMASDMIGNMSPDELQ 359

Query:   348 RMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKM 407
              M+  AS+  G  P A+    E         +T    +  +     D     SS+++  M
Sbjct:   360 NMLNFASNMGG--PSASPLRPENKLQSSSRATTSSTSQRSV-----DNSQPSSSQNV--M 410

Query:   408 FEMESTLKNKVAGQASTAVDPKGISSDPG-PRLSESRERSAVNGNNVVGQPSSGGFFPNS 466
                   L N+  G+          SS PG P  ++ +E       N +  P+    + + 
Sbjct:   411 ENPHEILSNQRMGE----------SSSPGAPSTADMQETM----RNAMKDPAMRKMYASM 456

Query:   467 RTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANM 512
               N       S ++   M+    D A  Q     + ++SPE +  M
Sbjct:   457 MKNISPEMMSSMSEQFGMKMTKEDAAKAQ---EALSSLSPEALDRM 499

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7XRB1 OSJNBa0006B20.12 "cDNA clone:002-172-D07, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 149/356 (41%), Positives = 215/356 (60%)

Query:     5 MMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTH 64
             MMDPEM+R+AQEQM RM P   A +QQQ+M+NP L+R ATE +K + P+DL+ A EQ++ 
Sbjct:     1 MMDPEMMRVAQEQMRRMPPAALAAMQQQLMSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60

Query:    65 TPPEEVAEIGEKLANASPEEIA-TMR-ARIDAQMNYEFNA---AKMLKKQGNELYSEGRF 119
             T  EEV  +  +LA ASPEE+A TM+ A+ + Q    + A   A+ LK QGN L+   R 
Sbjct:    61 TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNALFRLARH 120

Query:   120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179
             ++A  KY LA  NL+ + SS  R+L   C +N M+C+LKT +  EC+++GSEVL  D  N
Sbjct:   121 ADAAAKYALAVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180

Query:   180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239
             VKA YRRGQAY+++GR+E AV+DL  AHE+SP++  IAD LRDA+E L    G   PRGL
Sbjct:   181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKL----G--APRGL 234

Query:   240 LIEEITEEVGAVSSGSHRSSGTEYLAREKADPSK-SEHSANGRGSSTKPEFLPDLKD--- 295
             +IEEI EE          + G+E L    A  S  S HS      S       ++ +   
Sbjct:   235 VIEEIVEE-------EEEAQGSEILPTSGATSSSTSGHSVPSPSPSPSAAAAAEMMNSMG 287

Query:   296 DPESIRSFQNFISNANPDSFAALSGGKAG-EISPDMFKAVSIMINKMSPEELQRMI 350
             DP   +   + +   +P++ + + G + G ++S D    +   + K+SPE L++++
Sbjct:   288 DPAMGKMVASVVQGMDPETVSII-GKQFGVDLSRDDAARLQDAMKKLSPENLEKVM 342

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8I9E1 TPR1 "Predicted chloroplast-targeted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 367 (134.2 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 129/484 (26%), Positives = 218/484 (45%)

Query:    20 RMSPDDFARIQQQMMAN--PELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL 77
             +M+P+   ++Q  MM N  P++M+ A   MK+M+P+D + A +Q+           G+ +
Sbjct:     2 KMTPEQMEQMQS-MMKNMPPDMMQQAMSQMKDMKPDDWERAKQQMAGMD-------GDTM 53

Query:    78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH 137
             A  + +    M  R      Y  NA+  LK +GN+L++ G F+ A +KY  AK N+  + 
Sbjct:    54 ARQAAQAQQQMAGRTQ----YVLNASNQLKAEGNQLHNRGAFAEAAEKYERAKTNVASMA 109

Query:   138 SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 197
               E   L  AC+LN  SCYL  KQ+ +C++  + VLA +  N+KALYRRGQAY   G   
Sbjct:   110 GKEAADLARACTLNLSSCYLNLKQFSKCLENCNSVLASEPSNLKALYRRGQAYMGTGSWL 169

Query:   198 EAVSDLSNA----HEVSPDDGT-IADVLRDAKEIL--MKEDGHHGPRGLLIEEITEEVGA 250
             +A SDL  A     E+ P     I D L++ K+ +  ++  G   P G      +  V A
Sbjct:   170 DASSDLERALKMAKEIDPSQAVPIRDKLQEVKDRISALRASGQLPPAGA-----STAVAA 224

Query:   251 VSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS-----FQN 305
              ++ S    G   +  E+A       S +   +  +   +PD   D  ++R         
Sbjct:   225 ATAASSADDGDGVV--EEAQEMMKGMSDDQLRAMARQMGMPDAPLD--ALRGGLDADLMT 280

Query:   306 FISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANG 365
              ++    +    L G  A   +P+  K ++ ++ K +P+  + M ++ S+    +P    
Sbjct:   281 KVAKVQAELPPELRGPDAAR-NPEAMKKMAEVMAK-NPDMAKTMGEVLSTI---DPSKLQ 335

Query:   366 DSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTA 425
             +  +    G  PG    N+ P+M K A++   KMS  +LQ   +  + +    A   S+A
Sbjct:   336 EMAKQA--GLPPGM---NITPEMAKMAAESFQKMSPSELQAAMDTAAKMGPPPASLGSSA 390

Query:   426 VDPKGISSDPGPRLSESRERSAVNGNN--VVGQPSS--GGFFPNSRTNQQSSFSPST-AD 480
              D     +      S S   SA   ++    G P    GG  P +     +S  P   A+
Sbjct:   391 ADSSSARASSAAGASTSGRSSAAPASSSLAAGLPPMPPGGMDPRAAAEMMASMPPEQLAE 450

Query:   481 LQQM 484
             + +M
Sbjct:   451 MAKM 454

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2037650 TPR6 "AT1G58450" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 44/131 (33%), Positives = 71/131 (54%)

Query:    99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK-----NLQGIHSSEGRTLLLACSLNSM 153
             +  AA   K++GN LY   ++  A +KY  A +       +G    + + L ++C LN  
Sbjct:     6 KIEAANRKKEEGNLLYKTQKYERAAKKYNKAAECIENGKFEGGDEKQVKALRVSCFLNGA 65

Query:   154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +C LK K + E I + SEVL  + +NVKALYRR Q+Y ++G L  A  D++ A E  P++
Sbjct:    66 ACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRALEADPEN 125

Query:   214 GTIADVLRDAK 224
               +  + +  K
Sbjct:   126 REVKSLYKAMK 136

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 198 (74.8 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 55/170 (32%), Positives = 88/170 (51%)

Query:    64 HTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL 123
             + PP  +A++  ++     +++   +AR D  +     AA   K +GNE + E +F  A+
Sbjct:   149 NVPP--MADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAM 206

Query:   124 QKYLLAKKNLQGIHSSE--G--RTLLLA----CSLNSMSCYLKTKQYDECIKVGSEVLAY 175
             Q+Y +A   +      +  G  R + LA    C LN  +C +K K++DE I   + VL+ 
Sbjct:   207 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIVLSE 266

Query:   176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
             D  NVKAL+RRG+A  ++G+ E A  D   A + SP+D  I   LR   E
Sbjct:   267 DENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAE 316

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 202 (76.2 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 57/181 (31%), Positives = 93/181 (51%)

Query:    93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-SE-----GRTLLL 146
             D     +   A   K++GN L+  G++  A ++Y  A K ++   S SE      + L +
Sbjct:   396 DLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKV 455

Query:   147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
              C+LN+ +C LK K Y +  K+ ++VL  D++NVKALYRR QAY  +  LE A  D+  A
Sbjct:   456 TCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKA 515

Query:   207 HEVSPDDGTIADVLRDAKEILMKEDGHHGPR--GLLIEEITE---EVGAVSSGSHRSSGT 261
              E+ PD+  +    ++ KE  +KE      +    +  ++T+   E G   SG+    G+
Sbjct:   516 LEIDPDNRDVKLTYKNLKE-KVKEYNKKDAKFYSNMFAKMTKQPAEDGKAGSGAESKQGS 574

Query:   262 E 262
             E
Sbjct:   575 E 575

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q15785 TOMM34 "Mitochondrial import receptor subunit TOM34" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 51/159 (32%), Positives = 84/159 (52%)

Query:    71 AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 128
             +E  +++A +  +E    + R+ +  + E   A++LK++GNEL  +G    A++KY   L
Sbjct:   163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KARVLKEEGNELVKKGNHKKAIEKYSESL 220

Query:   129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188
                NL+    S  R L          CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct:   221 LCSNLESATYSN-RAL----------CYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query:   189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
             A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct:   270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 197 (74.4 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 49/140 (35%), Positives = 78/140 (55%)

Query:    93 DAQMNYE-FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLL 145
             D + N E   AA   K +GN  +  G+++ A ++Y  A K ++   S       + + L 
Sbjct:   400 DLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALK 459

Query:   146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 205
             ++C LN+ +C LK K+Y E  K+ ++VL  ++ NVKALYRR QAY ++  LE A  D+  
Sbjct:   460 VSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKK 519

Query:   206 AHEVSPDDGTIADVLRDAKE 225
             A E+ PD+  +  V +  KE
Sbjct:   520 ALEIDPDNRDVKMVYKTLKE 539

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 45/139 (32%), Positives = 72/139 (51%)

Query:    93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--GIHSSE----GRTLLL 146
             D        AA   K++GN L+  G+++ A ++Y    K ++       E     + L +
Sbjct:   400 DMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKI 459

Query:   147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
             AC+LN  +C LK K Y E  K+ ++VL  D++NVKA+YRR  AY +   L+ A  D+  A
Sbjct:   460 ACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKA 519

Query:   207 HEVSPDDGTIADVLRDAKE 225
              E+ PD+  +    +  KE
Sbjct:   520 LEIDPDNKEVKIEYKKLKE 538

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7ZWR6	OEP61_ARATH	No assigned EC number	0.5933	0.8905	0.9548	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX000173 hypothetical protein (588 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	594
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	4e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163
           + L   GN  Y  G +  AL+ Y  A +    +            +      Y K  +Y+
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAA-----AYYKLGKYE 51

Query: 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           E ++   + L  D  N KA Y  G AY  +G+ EEA+     A E+ P+
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            Y K   YDE ++   + L  D  N  A Y    AY  +G+ EEA+ D   A E+ PD+
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP 211
              K   YDE I+   + L  D  N +A Y    AY  +G   EEA+ DL  A E+ P
Sbjct: 12  ALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.4 bits (108), Expect = 2e-05
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 98  YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157
                A+ L   G  L + GR+  AL+    A K      +     L L         YL
Sbjct: 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL--------LYL 213

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217
           K  +Y+E ++   + L  D  N +ALY       ++GR EEA+  L  A E+ PD   + 
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLG 273

Query: 218 DVLRDAKEILMKE 230
             L       ++ 
Sbjct: 274 LALLLLLAEALEL 286

Length = 291

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            L+   YDE +      LA      +AL   G+A    GRL EA + L  A    PDD
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            KALY  G AY  +G+ +EA+     A E++P++
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 22/178 (12%)

Query: 30  QQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMR 89
           QQQ  + P++ +      K    E      E+ +  P     E     A+  PE   +  
Sbjct: 60  QQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEP----ADELPEIDESSV 115

Query: 90  ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLL 146
           A +  +   ++ A   LK++GN+ Y    F+ A++ Y   +  K +   ++ S       
Sbjct: 116 ANLSEEERKKYAAK--LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYS------- 164

Query: 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 204
               N  +C+     +++ ++  +  L  D    KAL RR  AY  +G+  +A+ DL+
Sbjct: 165 ----NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +ALY  G AY  +G  +EA+     A E+ P++
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +ALY  G AY  +G  EEA+     A E+ P++
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	594
KOG0553	304	consensus TPR repeat-containing protein [General f	99.84
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.61
KOG4234	271	consensus TPR repeat-containing protein [General f	99.54
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.51
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.45
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.44
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.41
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.39
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.37
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.37
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.36
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.33
KOG1126	638	consensus DNA-binding cell division cycle control	99.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.3
KOG0553	304	consensus TPR repeat-containing protein [General f	99.29
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.27
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.2
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.19
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.17
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.17
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.15
PRK11189	296	lipoprotein NlpI; Provisional	99.14
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.14
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.14
PRK12370	553	invasion protein regulator; Provisional	99.1
PRK12370	553	invasion protein regulator; Provisional	99.06
KOG1126	638	consensus DNA-binding cell division cycle control	99.04
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.04
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.98
PRK15359	144	type III secretion system chaperone protein SscB;	98.98
KOG1125	579	consensus TPR repeat-containing protein [General f	98.96
PRK11189	296	lipoprotein NlpI; Provisional	98.95
KOG1125	579	consensus TPR repeat-containing protein [General f	98.94
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.93
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.9
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.9
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.9
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.85
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.84
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.83
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.83
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.81
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.81
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.81
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.8
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.77
PLN02789	320	farnesyltranstransferase	98.77
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.77
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
KOG2003	840	consensus TPR repeat-containing protein [General f	98.74
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.74
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.71
PLN02789	320	farnesyltranstransferase	98.69
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.69
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.64
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.63
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.62
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.61
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.61
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.59
PRK15331	165	chaperone protein SicA; Provisional	98.59
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.57
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.57
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.55
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.46
PRK10803	263	tol-pal system protein YbgF; Provisional	98.43
PF13371	73	TPR_9: Tetratricopeptide repeat	98.43
KOG1129	478	consensus TPR repeat-containing protein [General f	98.41
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.39
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.35
KOG4555	175	consensus TPR repeat-containing protein [Function	98.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.35
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.34
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.31
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.3
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.29
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.28
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.23
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.22
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.22
PF13512	142	TPR_18: Tetratricopeptide repeat	98.2
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.17
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.17
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.15
KOG2076	895	consensus RNA polymerase III transcription factor	98.14
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.14
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.11
PRK14574	822	hmsH outer membrane protein; Provisional	98.1
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.09
PF13371	73	TPR_9: Tetratricopeptide repeat	98.09
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.08
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.06
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.06
PRK14574	822	hmsH outer membrane protein; Provisional	98.06
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.05
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.02
KOG1129	478	consensus TPR repeat-containing protein [General f	98.02
PF12688	120	TPR_5: Tetratrico peptide repeat	98.01
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.99
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.99
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.98
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.94
KOG2076	895	consensus RNA polymerase III transcription factor	97.94
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.92
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.9
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.86
KOG1310	758	consensus WD40 repeat protein [General function pr	97.83
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.79
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.79
PRK11906	458	transcriptional regulator; Provisional	97.75
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.75
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.75
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.74
KOG4234	271	consensus TPR repeat-containing protein [General f	97.73
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.72
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.72
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.68
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.66
KOG2003	840	consensus TPR repeat-containing protein [General f	97.64
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.64
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.63
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.6
PF13431	34	TPR_17: Tetratricopeptide repeat	97.58
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.56
PRK10803	263	tol-pal system protein YbgF; Provisional	97.54
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.53
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.47
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.46
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.46
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.39
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PF13428	44	TPR_14: Tetratricopeptide repeat	97.31
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.29
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.28
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.27
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.25
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.24
PF12688	120	TPR_5: Tetratrico peptide repeat	97.19
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.18
PRK11906	458	transcriptional regulator; Provisional	97.17
PRK15331	165	chaperone protein SicA; Provisional	97.09
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.96
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.94
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	96.93
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.88
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.88
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.87
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.83
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.83
KOG2471	696	consensus TPR repeat-containing protein [General f	96.8
PF13428	44	TPR_14: Tetratricopeptide repeat	96.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.64
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.57
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.56
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.55
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.51
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.41
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.38
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.31
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.27
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.25
PRK10941	269	hypothetical protein; Provisional	96.23
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.23
KOG4555	175	consensus TPR repeat-containing protein [Function	96.2
PF13431	34	TPR_17: Tetratricopeptide repeat	96.14
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.09
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.0
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.92
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.79
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.75
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.74
PF13512	142	TPR_18: Tetratricopeptide repeat	95.69
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.58
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.46
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.36
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.28
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.93
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.74
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.71
KOG1586	288	consensus Protein required for fusion of vesicles	94.61
KOG3364	149	consensus Membrane protein involved in organellar	94.59
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.39
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.28
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	94.02
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	93.99
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.9
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.85
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.84
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.73
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.66
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.62
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.01
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	92.96
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	92.93
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.58
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	92.55
KOG2471	696	consensus TPR repeat-containing protein [General f	92.18
PLN03077	857	Protein ECB2; Provisional	91.99
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.95
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	91.87
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.64
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.63
PRK04841	903	transcriptional regulator MalT; Provisional	91.58
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.52
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.33
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	90.88
COG2912	269	Uncharacterized conserved protein [Function unknow	90.83
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.74
PRK04841	903	transcriptional regulator MalT; Provisional	90.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.39
COG4700	251	Uncharacterized protein conserved in bacteria cont	90.13
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.92
PLN03218	1060	maturation of RBCL 1; Provisional	89.71
KOG3364	149	consensus Membrane protein involved in organellar	89.53
KOG4507	886	consensus Uncharacterized conserved protein, conta	89.51
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.24
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.13
KOG1915	677	consensus Cell cycle control protein (crooked neck	88.4
COG4105	254	ComL DNA uptake lipoprotein [General function pred	87.92
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	87.61
PRK10941	269	hypothetical protein; Provisional	87.45
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.26
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.18
PLN03077	857	Protein ECB2; Provisional	87.12
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	87.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	86.66
PLN03218	1060	maturation of RBCL 1; Provisional	86.32
KOG1941	518	consensus Acetylcholine receptor-associated protei	86.09
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	85.62
KOG1915	677	consensus Cell cycle control protein (crooked neck	85.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	83.55
KOG2610	491	consensus Uncharacterized conserved protein [Funct	82.99
KOG1586	288	consensus Protein required for fusion of vesicles	82.67
smart00727	41	STI1 Heat shock chaperonin-binding motif.	82.6
KOG1585	308	consensus Protein required for fusion of vesicles	81.89
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.33
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	81.23
PF11116	85	DUF2624: Protein of unknown function (DUF2624); In	80.84

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=2.2e-21  Score=195.30  Aligned_cols=122  Identities=28%  Similarity=0.370  Sum_probs=116.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....++.++.+||.+.+.++|.+|+.+|++||+++|.++         .+|.||+++|.++|.|+.|+++|+.||.+||.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA---------VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~  147 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA---------VYYCNRAAAYSKLGEYEDAVKDCESALSIDPH  147 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc---------hHHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence            445688999999999999999999999999999999994         58999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +.++|.|+|.+|+.+|+|++|++.|++||+++|++...+..|+.++.++.+
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999888754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=7.8e-17  Score=168.43  Aligned_cols=134  Identities=37%  Similarity=0.542  Sum_probs=122.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeecccCceeeeccccchhhhhhccee
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A  172 (594)
                      ....+...+..||.+|+.|+|..|+..|++++........      .....++..||+|++.||+++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            5566788999999999999999999999999987764432      2356677889999999999999999999999999


Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      |+++|+|++++||||.||..+++|+.|+.+|+++++++|.|..+...|..+..+++.+..
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887653

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=8.8e-16  Score=146.41  Aligned_cols=126  Identities=24%  Similarity=0.350  Sum_probs=114.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..++..||.+|+.|+|.+|...|.+||+++|..+.    +++..||.|+|.|+++++.++.||.+|.++|+|+|.
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt  166 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT  166 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence            4556788999999999999999999999999999998753    456779999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      +.+++.||+.+|..+.+|++|+.+|.+.++++|....++..+.++-..+.
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~  216 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN  216 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999998887777776655554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=5.5e-15  Score=158.29  Aligned_cols=133  Identities=23%  Similarity=0.352  Sum_probs=122.3

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      +.+..+.......+++.++..+..||.+|+.|+|..|+.+|+++|..+|.++         .+|.|||.||.+++.|..|
T Consensus       341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------~lYsNRAac~~kL~~~~~a  411 (539)
T KOG0548|consen  341 EKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------RLYSNRAACYLKLGEYPEA  411 (539)
T ss_pred             HHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHhhHHHH
Confidence            3444445555556788899999999999999999999999999999999995         4999999999999999999


Q ss_pred             hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      +.+|..+|+++|++.++|+|.|.|+..+.+|++|++.|++++++||++.++...+.+|...+
T Consensus       412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999998876

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=1.7e-14  Score=150.32  Aligned_cols=128  Identities=24%  Similarity=0.269  Sum_probs=119.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .++..+.++..||.+|+.|+|.+|.++|+++|.++|...     ..++.+|.|||.++.++|+.++||.+|+.|++|||.
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~-----~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s  319 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNK-----KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS  319 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcccc-----chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence            566778899999999999999999999999999999874     345779999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      +.++|.+||.||..+++|++|++||++|++++-+ .+++..+++++..|++.++
T Consensus       320 yikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  320 YIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999877 8899999999999987664

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=3.2e-14  Score=144.78  Aligned_cols=161  Identities=17%  Similarity=0.194  Sum_probs=126.3

Q ss_pred             CcchHHHHHHHHhcChhHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccch
Q 007653           22 SPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFN  101 (594)
Q Consensus        22 ~p~~l~r~~~~m~~~p~l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~  101 (594)
                      .+....+|+..|.+.|-+|..+-+--+.   ..-....+.|...           +....                 -.+
T Consensus        31 k~~~~Dew~kEm~k~PfFMt~~p~~gd~---~~~~~~LqslK~d-----------a~E~e-----------------p~E   79 (390)
T KOG0551|consen   31 KGFHEDEWEKEMNKVPFFMTRAPSEGDP---NPDNVCLQSLKAD-----------AEEGE-----------------PHE   79 (390)
T ss_pred             CCCCHHHHHHHHhcCcHHHhcCCCCCCC---CccHHHHHHhhhc-----------cccCC-----------------hHH
Confidence            4566788999999999999887663222   1111111111110           00011                 123


Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .++.++..||.||+.++|..|+.+|+++|.....+++     +++.+|.||++|.+.+|+|..||.+|.+|+.++|++.+
T Consensus        80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            5778999999999999999999999999998877764     56889999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                      +|||-+.|++.+.++++|+.+++..+.++-+...+..
T Consensus       155 a~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~  191 (390)
T KOG0551|consen  155 AYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE  191 (390)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            9999999999999999999999999888755444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.45  E-value=1.3e-14  Score=135.36  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=107.9

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~  185 (594)
                      +...|..++..|+|++|+.+|.+++.++|.+..         +|.++|.++.++|+|++|+..|.++++++|+++.++++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~   97 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ   97 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            556799999999999999999999999999854         89999999999999999999999999999999999999


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      +|.+|..+|++++|+..|+++++++|+++..+..++.++..+.
T Consensus        98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988877654

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.9e-14  Score=141.05  Aligned_cols=162  Identities=28%  Similarity=0.367  Sum_probs=136.5

Q ss_pred             CCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhh
Q 007653           51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK  130 (594)
Q Consensus        51 ~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL  130 (594)
                      .|..+.++++.++-..|+++...   .|+++.++              .......+...||.+|+.|+|++|+.+|.+||
T Consensus       143 nPqpL~FviellqVe~P~qYq~e---~Wqlsdde--------------Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi  205 (329)
T KOG0545|consen  143 NPQPLVFVIELLQVEAPSQYQRE---TWQLSDDE--------------KMKAVPVLHQEGNRLFKLGRYKEASSKYREAI  205 (329)
T ss_pred             CCCceEeehhhhhccCchhhccc---cccCCchH--------------hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHH
Confidence            37778889999999999887764   58877777              66678899999999999999999999999998


Q ss_pred             hcccc--------ccc-cccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653          131 KNLQG--------IHS-SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       131 ~l~p~--------~~~-~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      -...+        .++ .+......+++.|.+.|++..++|.++++.|..+|+.+|+|.+|||+||.|+...-+.++|..
T Consensus       206 ~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~  285 (329)
T KOG0545|consen  206 ICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA  285 (329)
T ss_pred             HHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence            75432        221 234555678999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCC-hHHHHHhHHHHHhhh
Q 007653          202 DLSNAHEVSPDDG-TIADVLRDAKEILMK  229 (594)
Q Consensus       202 ~lekAl~l~P~~~-~a~~~l~~a~~~l~~  229 (594)
                      ||.++|+++|.-. .+...+..+..++.+
T Consensus       286 D~~~vL~ldpslasvVsrElr~le~r~~e  314 (329)
T KOG0545|consen  286 DLQKVLELDPSLASVVSRELRLLENRMAE  314 (329)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            9999999999864 455666666655543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.41  E-value=4.8e-14  Score=143.69  Aligned_cols=115  Identities=24%  Similarity=0.329  Sum_probs=106.2

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      .....++.+||.||++|+|++||.||.+++...|.++         ..|.||+.+|+++++|..|..+|+.||.||-.+.
T Consensus        95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np---------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~  165 (536)
T KOG4648|consen   95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP---------VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV  165 (536)
T ss_pred             HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc---------cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence            3344589999999999999999999999999999885         4899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      ++|.||+.+...+|...||.++|+.+|++.|++.++...+..+.
T Consensus       166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~  209 (536)
T KOG4648|consen  166 KAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARIN  209 (536)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence            99999999999999999999999999999999887777666653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.39  E-value=1.1e-13  Score=149.52  Aligned_cols=158  Identities=19%  Similarity=0.121  Sum_probs=137.7

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++-.+...|...+...+.-+.+|.++||+|-..+.|++|+.+|.+|+.+.|..         +.+|-|+|-+|+.+|..+
T Consensus       233 ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~---------A~a~gNla~iYyeqG~ld  303 (966)
T KOG4626|consen  233 EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH---------AVAHGNLACIYYEQGLLD  303 (966)
T ss_pred             hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc---------hhhccceEEEEeccccHH
Confidence            34456677888888899999999999999999999999999999999999998         458999999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHH
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE  243 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee  243 (594)
                      -||..|+++|+++|+++.+|.++|.++...|+..||+.+|.+||.+.|+++++..+|+.++...+.-+.+..-+.+.+ +
T Consensus       304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-~  382 (966)
T KOG4626|consen  304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-E  382 (966)
T ss_pred             HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-h
Confidence            999999999999999999999999999999999999999999999999999999999999888777666554444444 3


Q ss_pred             HHHhhccc
Q 007653          244 ITEEVGAV  251 (594)
Q Consensus       244 ~~e~~~~~  251 (594)
                      +.++..+.
T Consensus       383 v~p~~aaa  390 (966)
T KOG4626|consen  383 VFPEFAAA  390 (966)
T ss_pred             hChhhhhh
Confidence            44444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.39  E-value=6.9e-14  Score=149.40  Aligned_cols=117  Identities=17%  Similarity=0.295  Sum_probs=111.6

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .++..|+.++..|+|.+|+.+|.++|+++|.++.         +|+++|.||+++|+|++|+.+|+++|.++|+++.+|+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~   74 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL   74 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence            4788899999999999999999999999999854         8999999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      ++|.+|..+|+|++|+.+|++++.++|++..++..+..|..++...
T Consensus        75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         75 RKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999888653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.37  E-value=6.4e-14  Score=151.34  Aligned_cols=128  Identities=16%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      |.+.++..+.-+.++.++|.+|-++|++++|+.+|+++|++.|.+.+         +|.|+|.+|-.+|+...|+.+|++
T Consensus       377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd---------a~~NmGnt~ke~g~v~~A~q~y~r  447 (966)
T KOG4626|consen  377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD---------ALSNMGNTYKEMGDVSAAIQCYTR  447 (966)
T ss_pred             HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH---------HHHhcchHHHHhhhHHHHHHHHHH
Confidence            33334444444444444444445555555555555555555554422         455555555555555555555555


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      ||.++|..++++.++|.+|...|+..+||..|+.||+++|+.+++..++..+..-+.
T Consensus       448 AI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc  504 (966)
T KOG4626|consen  448 AIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC  504 (966)
T ss_pred             HHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence            555555555555555555555555555555555555555555555555555544443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=2e-13  Score=144.60  Aligned_cols=99  Identities=24%  Similarity=0.416  Sum_probs=93.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ..+.+..++++||.+|+.|+|++||.+|++||+++|+.|         ..|.||+.||..+|+|++.+++|+++|+++|+
T Consensus       111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep---------iFYsNraAcY~~lgd~~~Vied~TkALEl~P~  181 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP---------IFYSNRAACYESLGDWEKVIEDCTKALELNPD  181 (606)
T ss_pred             HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc---------hhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence            356678999999999999999999999999999999975         48999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccc
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                      +.++++||+.+|-.+|++++|+.|+.-.
T Consensus       182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~  209 (606)
T KOG0547|consen  182 YVKALLRRASAHEQLGKFDEALFDVTVL  209 (606)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhHH
Confidence            9999999999999999999999998743

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.2e-13  Score=146.18  Aligned_cols=112  Identities=23%  Similarity=0.298  Sum_probs=107.9

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~  183 (594)
                      ..++.+||.+|..|+|+.|+.+|+++|.++|.+         ..+|.||..||..+++|.+|+.+..+.++++|+++++|
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy   73 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGY   73 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHH
Confidence            467899999999999999999999999999997         45899999999999999999999999999999999999


Q ss_pred             HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       184 ~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      +++|.++..+|+|++|+..|.+.|+++|+|..+...|..+.
T Consensus        74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999999999999999999887

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.33  E-value=4.4e-13  Score=137.27  Aligned_cols=241  Identities=19%  Similarity=0.176  Sum_probs=150.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ..+.+.-.+..+..++..|.+++||++|..+|.++|..         ..+|.+|+.+|+++++...||.+|..||+++|+
T Consensus       110 ~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D  180 (377)
T KOG1308|consen  110 MMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------AILYAKRASVFLKLKKPNAAIRDCDFAIEINPD  180 (377)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------hhhcccccceeeeccCCchhhhhhhhhhccCcc
Confidence            44455667777788899999999999999999999998         458999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHH--Hhhcc-cccCC
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT--EEVGA-VSSGS  255 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~--e~~~~-~~~~~  255 (594)
                      .++.|-.||.++..+|+|++|..+|+.+++++-+ ..+-..+.++....+..++....+....++..  +..+. .....
T Consensus       181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~r~  259 (377)
T KOG1308|consen  181 SAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYARE  259 (377)
T ss_pred             cccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccccc
Confidence            9999999999999999999999999999998754 23333333332222211111000000000000  00000 00000


Q ss_pred             cCCc-chhhhhhhcCCCCCcccccCCCCCCCCCCCCC----------CCCCChH------hHHHHHhhhhccCCcchhhc
Q 007653          256 HRSS-GTEYLAREKADPSKSEHSANGRGSSTKPEFLP----------DLKDDPE------SIRSFQNFISNANPDSFAAL  318 (594)
Q Consensus       256 ~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~----------~l~~~Pe------~~~~~~~~i~~~dpe~l~~m  318 (594)
                      .... ..+...  ..........+.++.++..++..+          ....++-      .+= +.++++  |||.+++|
T Consensus       260 ~~e~~~~e~~k--~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~g-i~ki~~--dpev~aAf  334 (377)
T KOG1308|consen  260 PEEMANPEEFK--RMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIG-ISKILS--DPEVAAAF  334 (377)
T ss_pred             hhhhcChhhhh--hhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCccccCCCccc-HhhhcC--chHHHHhh
Confidence            0000 000000  000111112222222222222211          1111111      111 333333  78888888


Q ss_pred             cCCccccCCchhhhHHHHhhcCCCHHHHHHHHHHhh
Q 007653          319 SGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIAS  354 (594)
Q Consensus       319 ~~~~~~~~~pdm~K~a~~m~~~mspeel~~m~~~as  354 (594)
                      +.+...-.-+|.+|...+|+++-+..++-.++.+-+
T Consensus       335 qdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~  370 (377)
T KOG1308|consen  335 QDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLS  370 (377)
T ss_pred             cChHHHhhhhhcccChHHHHHhccChHHHHHHHHHH
Confidence            777777778899999999999999999999988644

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.31  E-value=6.3e-13  Score=145.66  Aligned_cols=176  Identities=15%  Similarity=0.141  Sum_probs=145.7

Q ss_pred             cCCCchhhhhhhhhcCCChhHHHHH---HHHhhcCChHH-HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH
Q 007653           49 NMRPEDLKCAAEQLTHTPPEEVAEI---GEKLANASPEE-IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ  124 (594)
Q Consensus        49 ~~~pe~~~~a~e~l~~~~pee~~~~---~~~~~~~~~~e-l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~  124 (594)
                      -...++.+.+++.++...|-.++.+   ..-+|.+..+- +..+-+   .-....+..++.|...||++.-+++++.||+
T Consensus       366 l~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq---~Li~~~~~sPesWca~GNcfSLQkdh~~Aik  442 (638)
T KOG1126|consen  366 LIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ---DLIDTDPNSPESWCALGNCFSLQKDHDTAIK  442 (638)
T ss_pred             HHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH---HHHhhCCCCcHHHHHhcchhhhhhHHHHHHH
Confidence            3445666677777777666544443   33366664432 222223   3334577788899999999999999999999


Q ss_pred             HHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcc
Q 007653          125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS  204 (594)
Q Consensus       125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~le  204 (594)
                      +|++||+++|++         .++|.-+|.=+....+|+.|..+|+.||.++|++..|||-+|.+|.++++++.|.-+|+
T Consensus       443 ~f~RAiQldp~f---------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  443 CFKRAIQLDPRF---------AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             HHHHhhccCCcc---------chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            999999999999         67999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          205 NAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       205 kAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      +|+.++|.+..+...++.++.++++.+.+..-
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~  545 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQL  545 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence            99999999999999999999999877655433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.30  E-value=5.6e-13  Score=121.42  Aligned_cols=126  Identities=18%  Similarity=0.288  Sum_probs=113.8

Q ss_pred             hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhccee
Q 007653           93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (594)
Q Consensus        93 ~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A  172 (594)
                      +..+...++....+..+|..++..|+|.+|+..|++++.++|.++.         +|.++|.||++.++|.+|+..|.++
T Consensus         7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552         7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------YWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666788999999999999999999999999999998854         8999999999999999999999999


Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ++++|+++..++++|.+|...|++++|+..|+++++++|++.........+...+
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988777777665554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=1.5e-12  Score=131.72  Aligned_cols=88  Identities=25%  Similarity=0.275  Sum_probs=77.9

Q ss_pred             cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      +-|.-+++-++|.+|+..|++||+++|+|+.+|++|+.||.+||+|+.||++|+.|+.+||.+.++|.+|+.++..++++
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            45556778899999999999999999999999999999999999999999999999999999999999999998877655


Q ss_pred             cCCCCCcc
Q 007653          231 DGHHGPRG  238 (594)
Q Consensus       231 ~~a~~~~~  238 (594)
                      ..+...|+
T Consensus       166 ~~A~~ayk  173 (304)
T KOG0553|consen  166 EEAIEAYK  173 (304)
T ss_pred             HHHHHHHH
Confidence            44443333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.27  E-value=1.3e-12  Score=128.46  Aligned_cols=130  Identities=12%  Similarity=0.048  Sum_probs=116.0

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceee-ecccc
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTKQ  161 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~-~klg~  161 (594)
                      ++.+.+...++..++.+++.++.|..+|..+...|+|++|+.+|.+++++.|+++.         ++.++|.|+ +..|+
T Consensus        53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------~~~~lA~aL~~~~g~  123 (198)
T PRK10370         53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------LYAALATVLYYQAGQ  123 (198)
T ss_pred             hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcCC
Confidence            34556667778888889999999999999999999999999999999999999855         889999985 67787


Q ss_pred             --chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          162 --YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       162 --y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                        +++|+..++++++++|+++.+++++|.++..+|+|++|+.+|+++++++|.+..-...++
T Consensus       124 ~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        124 HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence              599999999999999999999999999999999999999999999999998765444443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.20  E-value=8.6e-11  Score=120.31  Aligned_cols=114  Identities=22%  Similarity=0.274  Sum_probs=97.0

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~  192 (594)
                      ....++|.++++.++++++.+|..+     .+....+.-++.||..-+++.+||+.|.++|.++|+++.+++.|+.+|..
T Consensus       279 ~ie~~~~t~cle~ge~vlk~ep~~~-----~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~  353 (504)
T KOG0624|consen  279 AIEEKHWTECLEAGEKVLKNEPEET-----MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG  353 (504)
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCccc-----ceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence            4556666666666666666666643     23445566689999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      -..|++||.+|++|++++++|..++..+..++...++..
T Consensus       354 dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~  392 (504)
T KOG0624|consen  354 DEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG  392 (504)
T ss_pred             hHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999988777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.19  E-value=3e-12  Score=146.24  Aligned_cols=146  Identities=9%  Similarity=0.001  Sum_probs=114.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+...+...+.....+..+|.+++..|+|++|+.+|.++++++|.++.         +|+++|.+|+.+|+|+
T Consensus       346 ~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~  416 (615)
T TIGR00990       346 KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEFA  416 (615)
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHH
Confidence            3445666677777777777778888888888888888888888888888777744         7788888888888888


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                      +|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++.+.|+++.++..++.+....++...+...+.
T Consensus       417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  491 (615)
T TIGR00990       417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD  491 (615)
T ss_pred             HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888887777666554443333

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.17  E-value=4.6e-12  Score=118.52  Aligned_cols=106  Identities=12%  Similarity=0.108  Sum_probs=98.4

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      +..+.++..|..++..|+|++|+..|+-...++|.+..         .|+|+|.|+..+|+|.+||..|.+|+.++|+++
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            44667899999999999999999999999999999954         899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      .++++.|.||+.+|+.+.|++.|+.|+.+.-.+++
T Consensus       104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence            99999999999999999999999999998744433

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.17  E-value=1.3e-11  Score=131.71  Aligned_cols=120  Identities=23%  Similarity=0.330  Sum_probs=114.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ++.++++++.+++.+.|+.|+..|.+||+++|+.         +..|.||+.+|++.++|..|+.++.+||+++|.+.++
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~   74 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKA   74 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------eeeechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence            5678999999999999999999999999999998         5589999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      |+++|.++..++++.+|+.+|++...+.|+++.+...+.+|...+.+++
T Consensus        75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988887643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.15  E-value=8.5e-12  Score=148.06  Aligned_cols=138  Identities=4%  Similarity=-0.074  Sum_probs=120.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...++..+...+. +..+.++|.++.+.|++++|+..|.+++.++|.++.         ++.|+|.++...|+++
T Consensus       591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------YQAALGYALWDSGDIA  660 (987)
T ss_pred             CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHH
Confidence            455666777777777776 888999999999999999999999999999999854         8899999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+..+....+
T Consensus       661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~  728 (987)
T PRK09782        661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR  728 (987)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888877777665554433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.14  E-value=1.3e-11  Score=128.54  Aligned_cols=106  Identities=21%  Similarity=0.107  Sum_probs=101.1

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      ..+..+..+|..+...|++.+|+..|+++++++|.++.         +|+++|.+|...|+|++|+..|+++|+++|++.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            44778999999999999999999999999999999854         899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      .+|+++|.+|...|++++|+.+|+++++++|+++.
T Consensus       133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        133 YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999873

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.14  E-value=6.9e-12  Score=143.32  Aligned_cols=144  Identities=13%  Similarity=0.046  Sum_probs=126.2

Q ss_pred             HHHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653           85 IATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (594)
Q Consensus        85 l~aa~~~~~a~~~~---~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~  161 (594)
                      ++.+...+...+..   .+..+..+..+|.+++..|+|++|+..|.++++++|.+..         +|+++|.+|..+|+
T Consensus       310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---------~~~~la~~~~~~g~  380 (615)
T TIGR00990       310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---------SYIKRASMNLELGD  380 (615)
T ss_pred             HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHCCC
Confidence            44455555555543   4677889999999999999999999999999999998843         78999999999999


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  237 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~  237 (594)
                      |++|+.+|+++|+++|+++.+|+.+|.+|..+|+|++|+.+|++++.++|++..++..++.+...++++..+....
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~  456 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF  456 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888877665544333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.14  E-value=2e-11  Score=144.85  Aligned_cols=184  Identities=13%  Similarity=0.062  Sum_probs=139.6

Q ss_pred             ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007653           48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL  127 (594)
Q Consensus        48 k~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~  127 (594)
                      ...+.++....++.+...+|........-.......++.++...+++.+...+.....+..++..+...|+|++|+..|.
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~  600 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT  600 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            44455555555555544333321111110111223344556666666666666656666666666667799999999999


Q ss_pred             HhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653          128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (594)
Q Consensus       128 kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl  207 (594)
                      ++++++|. +.         +|+++|.++.++|++++|+..|++++.++|+++.+++++|.+|...|++++|+..|++++
T Consensus       601 ~AL~l~P~-~~---------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        601 RSLNIAPS-AN---------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHhCCC-HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999996 43         789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          208 EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       208 ~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      +++|+++.++..++.+...+++...+...++..+
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999888766555444444

>PRK12370 invasion protein regulator; Provisional

Probab=99.10  E-value=3.2e-11  Score=136.28  Aligned_cols=139  Identities=9%  Similarity=-0.037  Sum_probs=98.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..+...+++.+...++.+.++..+|..+...|+|++|+.+|+++++++|+++.         +|+++|.+|...|+++
T Consensus       319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~G~~~  389 (553)
T PRK12370        319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD---------IKYYYGWNLFMAGQLE  389 (553)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHH
Confidence            4556666667777777777777777777777777777777777777777777643         6677777777777777


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccC-CCCChHHHHHhHHHHHhhhcc
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~-P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +|+..|+++++++|.++.+++.++.+++..|+|++|+..+++++... |+++.++..++.+...+++.+
T Consensus       390 eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~  458 (553)
T PRK12370        390 EALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE  458 (553)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence            77777777777777777666666666666777777777777777664 566666666776665555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.06  E-value=3.5e-11  Score=135.92  Aligned_cols=140  Identities=10%  Similarity=-0.037  Sum_probs=120.9

Q ss_pred             cCChHHHHHHHHhhhhcccccchHHHHHHHhccccc---------ccccchhHHHHHHHhhhccccccccccceeeeeec
Q 007653           79 NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY---------SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS  149 (594)
Q Consensus        79 ~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~---------~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~  149 (594)
                      ...++.++.+...+.+.+...++.+..+..+|.+++         ..+++.+|+..|+++++++|.++.         +|
T Consensus       271 ~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~---------a~  341 (553)
T PRK12370        271 QYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ---------AL  341 (553)
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---------HH
Confidence            345667778888888899989988888888876554         445689999999999999999965         78


Q ss_pred             ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ..+|.++...|+|++|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|.+..+...+..+....
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999887655544444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.04  E-value=6.7e-11  Score=129.94  Aligned_cols=146  Identities=15%  Similarity=0.130  Sum_probs=129.9

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (594)
Q Consensus        82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~  161 (594)
                      .++++.+...|+.++.-.++...+|+-+|.+|.++++|+.|.-+|++|++++|...         ....-+|..|.++|+
T Consensus       468 ~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------vi~~~~g~~~~~~k~  538 (638)
T KOG1126|consen  468 TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------VILCHIGRIQHQLKR  538 (638)
T ss_pred             hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------hHHhhhhHHHHHhhh
Confidence            35677888888899998999999999999999999999999999999999999883         355678888999999


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      .++|+..|++|+.+||.++-.-|.+|.++..+++|++|+..||+.-++.|++..++..++++..++++..-+...
T Consensus       539 ~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~  613 (638)
T KOG1126|consen  539 KDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH  613 (638)
T ss_pred             hhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999998877654433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=6.3e-11  Score=116.26  Aligned_cols=116  Identities=29%  Similarity=0.326  Sum_probs=102.8

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .++.++..||.+|..++|..||.+|.++|-++|..         +..|.|++.||+++++|+.+..+|.+||.++|+.++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk   79 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK   79 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence            46679999999999999999999999999999998         458999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccC---C--CCChHHHHHhHHHHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS---P--DDGTIADVLRDAKEI  226 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~---P--~~~~a~~~l~~a~~~  226 (594)
                      ++|.+|.++.....|++||..+.+|+.+-   |  .-..+...|..+++.
T Consensus        80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            99999999999999999999999995542   1  224577777776443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.02  E-value=9.3e-11  Score=113.65  Aligned_cols=180  Identities=16%  Similarity=0.134  Sum_probs=128.9

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e  121 (594)
                      +...+...+.++....++......|+........ .......+++.+...+...+...+.....+..+|..++..|+|++
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~  117 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQ  117 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHH
Confidence            4444555556666555555544445443332222 111122344556666666666677777888889999999999999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      |+..|.+++...+...       ....+.++|.||...|++++|+..|.+++.++|+++.+++.+|.++...|++++|+.
T Consensus       118 A~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       118 AMQQFEQAIEDPLYPQ-------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHHHHHHhcccccc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999987532111       133678889999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          202 DLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       202 ~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      .+++++.+.|.+...+..+..+....++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGD  218 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence            9999998888777766666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.00  E-value=9.2e-11  Score=135.05  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=89.1

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh----hhhhcceeeeecccchHH
Q 007653          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE----CIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e----Ai~~~~~AL~ldP~~~ka  182 (594)
                      ...+..++..|+|++|+..|.+++++.|.++.         +++++|.+|...|+|++    |+..|+++++++|+++.+
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a  286 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAA---------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI  286 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34466677777888888888888777777643         67777888888887775    677788888888888888


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~  234 (594)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....+++..+.
T Consensus       287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~  338 (656)
T PRK15174        287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS  338 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            8888888888888888888888888888887777777777776666655443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.99  E-value=1e-10  Score=134.61  Aligned_cols=145  Identities=12%  Similarity=0.043  Sum_probs=124.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchh----HHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN----ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  159 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e----Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl  159 (594)
                      +++.+...+...+...++.+..+..+|..++..|+|++    |+..|+++++++|.++         .++.++|.+|.+.
T Consensus       227 ~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------~a~~~lg~~l~~~  297 (656)
T PRK15174        227 KYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------RIVTLYADALIRT  297 (656)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHC
Confidence            34456677777777788889999999999999999986    8999999999999884         4889999999999


Q ss_pred             ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  237 (594)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~  237 (594)
                      |+|++|+..|++++.++|+++.+++++|.+|..+|++++|+..|++++..+|++..+...++.+....++...+...+
T Consensus       298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l  375 (656)
T PRK15174        298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF  375 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998776666666666666555443333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.98  E-value=7.1e-11  Score=135.51  Aligned_cols=143  Identities=6%  Similarity=-0.068  Sum_probs=125.7

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus        90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~  169 (594)
                      .++.+-.+..+..++.++.+|.+....|+|++|+..|..++++.|++.         .++.+++.++.+++++++|+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------~a~~~~a~~L~~~~~~eeA~~~~  143 (694)
T PRK15179         73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------EAFILMLRGVKRQQGIEAGRAEI  143 (694)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------HHHHHHHHHHHHhccHHHHHHHH
Confidence            333444444666789999999999999999999999999999999984         48999999999999999999999


Q ss_pred             ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      ++++..+|+++.+++.+|.++..+|+|++|+..|++++..+|+++.++-.++.+.+..++...+...++..+
T Consensus       144 ~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        144 ELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888888776655555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.98  E-value=5.4e-11  Score=110.91  Aligned_cols=108  Identities=6%  Similarity=-0.119  Sum_probs=98.6

Q ss_pred             HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      -..+|+++++++|..            ++++|.++...|+|++|+..|++++.++|.+..+|+.+|.++..+|+|++|+.
T Consensus        12 ~~~~~~~al~~~p~~------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~   79 (144)
T PRK15359         12 PEDILKQLLSVDPET------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN   79 (144)
T ss_pred             HHHHHHHHHHcCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            456799999999886            45789999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          202 DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       202 ~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      .|++++.++|++..++..++.+...+++..++...+...+
T Consensus        80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al  119 (144)
T PRK15359         80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI  119 (144)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999988877666655554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.96  E-value=1.7e-10  Score=125.07  Aligned_cols=136  Identities=16%  Similarity=0.116  Sum_probs=115.4

Q ss_pred             HHHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653           85 IATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~--~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      +......|.......+  ..++.+..+|.+|+-.|.|++|+.||+.||...|.+         ..+|+.+|+++....++
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd---------~~lWNRLGAtLAN~~~s  480 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND---------YLLWNRLGATLANGNRS  480 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch---------HHHHHHhhHHhcCCccc
Confidence            3334444444444444  567889999999999999999999999999999999         45999999999999999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC----------ChHHHHHhHHHHHhhh
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------GTIADVLRDAKEILMK  229 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~----------~~a~~~l~~a~~~l~~  229 (594)
                      ++||..|.+||.|.|.++.+.||+|.++..+|.|+||+++|-.||.+.+..          ..+|..|+.+.....+
T Consensus       481 ~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  481 EEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             HHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999998762          2477777766555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.95  E-value=2.3e-10  Score=119.31  Aligned_cols=85  Identities=13%  Similarity=0.049  Sum_probs=43.7

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      .+...+...+...++.+..+..+|..+...|+|++|+..|.++++++|.+.         .+|.|+|.+|+..|+|++|+
T Consensus        82 ~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         82 LARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------YAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHH
Confidence            334444444444555555555555555555555555555555555555542         24555555555555555555


Q ss_pred             hhcceeeeecccch
Q 007653          167 KVGSEVLAYDAKNV  180 (594)
Q Consensus       167 ~~~~~AL~ldP~~~  180 (594)
                      ++|+++++++|+++
T Consensus       153 ~~~~~al~~~P~~~  166 (296)
T PRK11189        153 DDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHhCCCCH
Confidence            55555555544443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=3.4e-10  Score=122.83  Aligned_cols=203  Identities=14%  Similarity=0.055  Sum_probs=165.1

Q ss_pred             ChhHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccc
Q 007653           36 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY  114 (594)
Q Consensus        36 ~p~l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~  114 (594)
                      +|+-+......|++..-.+..-++|+-....|++++++... +.+..-+.-..+...+++.++..+...+++..++..|.
T Consensus       285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT  364 (579)
T ss_pred             CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence            45666778888888888888888999889999999987654 23333333335666788888889999999999999998


Q ss_pred             ccccchhHHHHHHHhhhccccccc----------------------------------cccceeeeeecccCceeeeccc
Q 007653          115 SEGRFSNALQKYLLAKKNLQGIHS----------------------------------SEGRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus       115 ~~g~y~eAi~~Y~kAL~l~p~~~~----------------------------------~e~~~l~~~~~~N~a~~~~klg  160 (594)
                      .+|.-.+|+.++.+=|...|....                                  .........++.-||.+|+-.+
T Consensus       365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence            888888888887777665543210                                  0011234557888999999999


Q ss_pred             cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                      +|++|+++|+.||..+|++...|.++|.++..-.+.++||..|.+|++|.|.+..++.+++..+--++-|+++.+..-
T Consensus       445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887655533

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.93  E-value=1.2e-10  Score=112.89  Aligned_cols=141  Identities=10%  Similarity=0.069  Sum_probs=121.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+...+...+.....+..+|..++..|++++|+..|.+++++.|.++.         ++.+++.+|...|+|+
T Consensus        46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~g~~~  116 (234)
T TIGR02521        46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------VLNNYGTFLCQQGKYE  116 (234)
T ss_pred             CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcccHH
Confidence            3445555555556666777889999999999999999999999999999888743         7899999999999999


Q ss_pred             hhhhhcceeeeec--ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          164 ECIKVGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       164 eAi~~~~~AL~ld--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      +|+..|.+++...  +.....++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+
T Consensus       117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            9999999999754  567789999999999999999999999999999999998888888888777665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.8e-10  Score=120.50  Aligned_cols=158  Identities=17%  Similarity=0.114  Sum_probs=133.4

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc---cceeeeeecccCceeeeccc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~N~a~~~~klg  160 (594)
                      +...+..+.+..++.....+++++..|.+++-..+.+.|+.+|.++|.++|......   ...-....+.++|.-.++.|
T Consensus       184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G  263 (486)
T KOG0550|consen  184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG  263 (486)
T ss_pred             cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence            344677788888888999999999999999999999999999999999999875311   01111235678888899999


Q ss_pred             cchhhhhhcceeeeecccc----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          161 QYDECIKVGSEVLAYDAKN----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      +|.+|.++|+++|.+||+|    ++.|++|+.++.++|+.++|+.+++.|+.|||.+-+++.+.+.|+..+.+.+++.+.
T Consensus       264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d  343 (486)
T KOG0550|consen  264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED  343 (486)
T ss_pred             chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999975    778999999999999999999999999999999999999999998888877765544


Q ss_pred             ccchH
Q 007653          237 RGLLI  241 (594)
Q Consensus       237 ~~~~i  241 (594)
                      +..++
T Consensus       344 ~~~a~  348 (486)
T KOG0550|consen  344 YEKAM  348 (486)
T ss_pred             HHHHH
Confidence            44443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.90  E-value=6.8e-10  Score=108.89  Aligned_cols=165  Identities=16%  Similarity=0.071  Sum_probs=96.2

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e  121 (594)
                      +.+.+.+.+....+.-++.....+|..+.....+ ...+...+.+.+...|++.+...++..+.+.|.|..++.+|+|++
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence            5555555555555555555555555544443322 111222234455566666666666666666666666666666666


Q ss_pred             HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      |...|++|+. +|..+.      ....|.|+|.|.++.|+++.|..+|+++|++||+++-+...++..++..|+|..|..
T Consensus       122 A~q~F~~Al~-~P~Y~~------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         122 AMQQFERALA-DPAYGE------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             HHHHHHHHHh-CCCCCC------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            6666666665 343332      234566666666666666666666666666666666666666666666666666666


Q ss_pred             hcccccccCCCCC
Q 007653          202 DLSNAHEVSPDDG  214 (594)
Q Consensus       202 ~lekAl~l~P~~~  214 (594)
                      ++++...--+-..
T Consensus       195 ~~~~~~~~~~~~A  207 (250)
T COG3063         195 YLERYQQRGGAQA  207 (250)
T ss_pred             HHHHHHhcccccH
Confidence            6666555444333

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=7.2e-10  Score=119.89  Aligned_cols=138  Identities=19%  Similarity=0.255  Sum_probs=117.7

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (594)
Q Consensus        88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~  167 (594)
                      +..=+..+....|..+-.++.+|.++|..+.|.+|+.+|..++...+.....  ...-.+.++|+|.+|+++++|++||.
T Consensus       399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e--~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE--KIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc--ccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            3334445555677778899999999999999999999999999655544221  11235578999999999999999999


Q ss_pred             hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      .|+++|.+.|.++.+|.-.|.+|..+|+++.|+++|.++|.++|++..+...|+.+.+.-
T Consensus       477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~  536 (611)
T KOG1173|consen  477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDS  536 (611)
T ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999888888776553

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.85  E-value=2.3e-10  Score=112.41  Aligned_cols=120  Identities=11%  Similarity=0.010  Sum_probs=108.6

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccch-h
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-K  191 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al-~  191 (594)
                      +...+++.+++..|.++++.+|.+..         .|.++|.+|...++|++|+..|+++++++|+++..++.+|.++ .
T Consensus        49 ~~~~~~~~~~i~~l~~~L~~~P~~~~---------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~  119 (198)
T PRK10370         49 FASQQTPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY  119 (198)
T ss_pred             ccCchhHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            33478889999999999999999955         8999999999999999999999999999999999999999986 6


Q ss_pred             hhhh--HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          192 DIGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       192 ~lg~--~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      ..|+  +++|+..|+++++++|++..++..++.+....++++.+....+..+
T Consensus       120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7787  5999999999999999999999999999999988887666655555

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.84  E-value=3.9e-10  Score=99.37  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=98.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---  179 (594)
                      ++.++.+|..+++.|+|.+|+..|.+++...|..+.      ...+++++|.+|++.++|++|+..|.+++..+|++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence            357889999999999999999999999998876531      13478899999999999999999999999998885   


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  219 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~  219 (594)
                      +.+++.+|.+|..+|++++|+..|++++...|++..+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            6789999999999999999999999999999998765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.83  E-value=1.4e-10  Score=93.50  Aligned_cols=65  Identities=29%  Similarity=0.504  Sum_probs=62.7

Q ss_pred             eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh-hHHHHhhhcccccccCC
Q 007653          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-~~~eAi~~lekAl~l~P  211 (594)
                      .+|.++|.+++..++|++|+.+|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            368899999999999999999999999999999999999999999999 89999999999999998

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.2e-09  Score=115.89  Aligned_cols=141  Identities=14%  Similarity=0.065  Sum_probs=71.3

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      ++.+++.++....+|--.|..+...++...||+.|++|++++|.+         ..+|+.+|++|--++-+.=|+-+|++
T Consensus       353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---------yRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---------YRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---------HHHHhhhhHHHHHhcchHHHHHHHHH
Confidence            333344444444455555555555555555555555555555554         22455555555555555555555555


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      |+++.|.+...|..+|.||..+++.++|+++|.+|+...-.+..++-.|+++.+.+++.+++...+.+.+
T Consensus       424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v  493 (559)
T KOG1155|consen  424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYV  493 (559)
T ss_pred             HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555544444555555555555555444444444444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.81  E-value=7.7e-10  Score=135.14  Aligned_cols=116  Identities=14%  Similarity=0.114  Sum_probs=74.2

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (594)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg  187 (594)
                      .+|..+++.|+|++|+.+|+++++++|.++         .+++++|.+|...|+|++|++.|+++++++|++..+++.++
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~---------~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~  426 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDS---------YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA  426 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345556666666666666666666666553         35666777777777777777777777777777666554443


Q ss_pred             cc------------------------------------------hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          188 QA------------------------------------------YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       188 ~a------------------------------------------l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      .+                                          +...|++++|+..|+++++++|+++.++..++.+..
T Consensus       427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~  506 (1157)
T PRK11447        427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR  506 (1157)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            33                                          334567777777777777777777766666666665


Q ss_pred             HhhhccC
Q 007653          226 ILMKEDG  232 (594)
Q Consensus       226 ~l~~~~~  232 (594)
                      ..++.+.
T Consensus       507 ~~G~~~~  513 (1157)
T PRK11447        507 QAGQRSQ  513 (1157)
T ss_pred             HcCCHHH
Confidence            5555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.81  E-value=2.6e-09  Score=104.84  Aligned_cols=142  Identities=13%  Similarity=-0.005  Sum_probs=124.8

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg  160 (594)
                      ...+...++..+.+.++..++...+|..++..|.+.|..+.|-+.|++|+.+.|+..+         +++|.|..+..+|
T Consensus        47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------VLNNYG~FLC~qg  117 (250)
T COG3063          47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------VLNNYGAFLCAQG  117 (250)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---------hhhhhhHHHHhCC
Confidence            3445667888888999999999999999999999999999999999999999999954         8999999999999


Q ss_pred             cchhhhhhcceeeee--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          161 QYDECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       161 ~y~eAi~~~~~AL~l--dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +|++|...|++|+..  -+..++.|-|+|.|-++.|+++.|..+|+++|+++|+++.....+...+..-+++-
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence            999999999999863  23457899999999999999999999999999999999887777776666555544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.81  E-value=5.9e-10  Score=114.73  Aligned_cols=133  Identities=20%  Similarity=0.144  Sum_probs=103.4

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      ...+..+...|.++.+.|++++|+.+|+++++++|.++.         +...++.++...|+++++...+....+..|++
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~  213 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLLIDMGDYDEAREALKRLLKAAPDD  213 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH
Confidence            466788999999999999999999999999999999864         67788999999999999888888888878999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      +..+..+|.+|..+|++++|+.+|+++++.+|+|+.+...++.+....++.+.+..-+....
T Consensus       214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999988877665554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=7.6e-10  Score=117.27  Aligned_cols=130  Identities=18%  Similarity=0.096  Sum_probs=120.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ++...-.||-|.-++++++|+.+|++||+++|..         ..+|.-.|+=|..+++-..||+.|++|++++|.+.++
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~---------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY---------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            4566778899999999999999999999999998         4589999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      ||-+|++|.-++-+.-|+-+|++|+.+.|+|+.+|..|++|..++.+-..+...+..++
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai  459 (559)
T KOG1155|consen  401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI  459 (559)
T ss_pred             HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988777766666555

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.80  E-value=1.2e-09  Score=112.06  Aligned_cols=119  Identities=22%  Similarity=0.268  Sum_probs=107.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..++.++.+|+.++..|+|.+|+.+|..|++.+|+.         ..+++.||.+|+.+|+-..|+.+++++|++.|+
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD  104 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------YQAIFRRATVYLAMGKSKAALQDLSRVLELKPD  104 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------HHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence            44557889999999999999999999999999999998         458999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHH
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEI  226 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~---~a~~~l~~a~~~  226 (594)
                      ...+...||.+++..|++++|..+|+..|..+|.+.   ++++.+..+.+.
T Consensus       105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~  155 (504)
T KOG0624|consen  105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH  155 (504)
T ss_pred             HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999653   455555555433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.80  E-value=1.2e-09  Score=127.00  Aligned_cols=136  Identities=16%  Similarity=0.140  Sum_probs=113.6

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      ..+...+...+...++....+..+|..+...|++++|+..|+++++..|.++         .++.+++.+|...++ .+|
T Consensus       753 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~~~-~~A  822 (899)
T TIGR02917       753 AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA---------VVLNNLAWLYLELKD-PRA  822 (899)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHhcCc-HHH
Confidence            3455555555666777788888889889999999999999999998888774         378888888888888 889


Q ss_pred             hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +..+++++.+.|+++..++.+|.+|...|++++|+.+|+++++++|.++.++..+..+..+.++..
T Consensus       823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  888 (899)
T TIGR02917       823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA  888 (899)
T ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999999998888888888877766544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.79  E-value=1.7e-09  Score=132.10  Aligned_cols=142  Identities=13%  Similarity=0.109  Sum_probs=118.2

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc-----------------------
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-----------------------  140 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-----------------------  140 (594)
                      +++.+...+.+.+...+..+..+..+|.++...|+|++|+.+|+++++++|.+....                       
T Consensus       366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~  445 (1157)
T PRK11447        366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS  445 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence            455677777788888888899999999999999999999999999999998864310                       


Q ss_pred             ----------cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          141 ----------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       141 ----------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                                ...+...++.+++.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++
T Consensus       446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~  525 (1157)
T PRK11447        446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK  525 (1157)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence                      0001122344567778889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHhHHHH
Q 007653          211 PDDGTIADVLRDAKE  225 (594)
Q Consensus       211 P~~~~a~~~l~~a~~  225 (594)
                      |+++.++..+.....
T Consensus       526 P~~~~~~~a~al~l~  540 (1157)
T PRK11447        526 PNDPEQVYAYGLYLS  540 (1157)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999888776655443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=2.3e-09  Score=114.27  Aligned_cols=207  Identities=13%  Similarity=0.088  Sum_probs=168.9

Q ss_pred             cchHHHHHHHHhcChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccc
Q 007653           23 PDDFARIQQQMMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEF  100 (594)
Q Consensus        23 p~~l~r~~~~m~~~p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~  100 (594)
                      .+|+.....---.++. +++.|.-.++..+++.....+......+|+.-...+.|. .....++++.+.+.+++.+...+
T Consensus       346 ~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p  425 (606)
T KOG0547|consen  346 QEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP  425 (606)
T ss_pred             hhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            3444443332223445 888888888888888888888777778887766666552 22355678899999999999999


Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--  178 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--  178 (594)
                      +.+-.+..++..+|+++++.++...|+++++..|..++         +|.-.|.++..+++|+.|++.|+.||+|.|.  
T Consensus       426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~  496 (606)
T KOG0547|consen  426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------VYNLFAEILTDQQQFDKAVKQYDKAIELEPREH  496 (606)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence            99999999999999999999999999999999999976         8888999999999999999999999999999  


Q ss_pred             ----chHHHHHhccchhh-hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653          179 ----NVKALYRRGQAYKD-IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       179 ----~~ka~~~rg~al~~-lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                          ++..+...|.++.+ .+++..|+..+++|+++||....++.-++.++-+.++-.++.+-++
T Consensus       497 ~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  497 LIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE  561 (606)
T ss_pred             cccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                88888888877754 4789999999999999999999888888887766665544443333

>PLN02789 farnesyltranstransferase

Probab=98.77  E-value=2.4e-09  Score=112.72  Aligned_cols=133  Identities=10%  Similarity=-0.054  Sum_probs=119.8

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc--
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY--  162 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y--  162 (594)
                      ..+...+...+..+++...++..+|.++...+ ++.+++..|.++++.+|.+.         .+|.+|+.++.+++++  
T Consensus        54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------qaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------QIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------HHhHHHHHHHHHcCchhh
Confidence            35666666777788888999999999999888 68999999999999999984         4899999999888874  


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ++++.+++++|++||+|..+|+.|+.++..+|+|++|+++++++++++|.|..++..+..+...+
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            78899999999999999999999999999999999999999999999999999999999887655

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.77  E-value=8.5e-10  Score=89.96  Aligned_cols=99  Identities=30%  Similarity=0.435  Sum_probs=91.5

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .+..+|..++..|+|.+|+..|.++++..|..+         .++++++.||...+++++|+..|.+++.+.|.+..+++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   72 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY   72 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence            467888899999999999999999999988774         37889999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCC
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      .+|.++...|++++|..++++++.++|+
T Consensus        73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          73 NLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999988874

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.76  E-value=5.4e-10  Score=94.09  Aligned_cols=83  Identities=25%  Similarity=0.392  Sum_probs=73.1

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (594)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~  195 (594)
                      .|+|++|+..|++++...|..+.       ..+++++|.||++.|+|++|+..+++ +++++.++..++.+|.||..+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~-------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPN-------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHH-------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHHHCCCChh-------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence            58999999999999999995321       33678899999999999999999999 99999999999999999999999


Q ss_pred             HHHHhhhcccc
Q 007653          196 LEEAVSDLSNA  206 (594)
Q Consensus       196 ~~eAi~~lekA  206 (594)
                      |++|+..|+++
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=1.2e-09  Score=104.48  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=96.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..++.+|..+...|+|++|+.+|++++.+.|..+.      ...++.++|.+|.++|+|++|+..|.+++.++|.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------RSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            4556778999999999999999999999999988765421      1347899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhh--------------HHHHhhhcccccccCCCC
Q 007653          179 NVKALYRRGQAYKDIGR--------------LEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~--------------~~eAi~~lekAl~l~P~~  213 (594)
                      +..+++.+|.+|..+|+              +++|++.+++++.++|++
T Consensus       105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999999887              677888888888888876

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.74  E-value=5.3e-09  Score=110.27  Aligned_cols=183  Identities=18%  Similarity=0.159  Sum_probs=140.6

Q ss_pred             HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc----CChHHHHHHHHhhhhcccccchHHHHHHHhcccccc
Q 007653           40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN----ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS  115 (594)
Q Consensus        40 ~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~----~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~  115 (594)
                      +..|.+.|++.+.+....+...+...+.....+....+..    +...++..+..-.+..+....-.+.++.++||..|.
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~  502 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFA  502 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeee
Confidence            3447777777776666666655544433332222222111    112234444444444444444557789999999999


Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (594)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~  195 (594)
                      .|+|++|.+.|+++|..+..+..         +++|+|..+.++|+.++|+++|-+...+--+++..++.++.+|-.+.+
T Consensus       503 ngd~dka~~~ykeal~ndasc~e---------alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led  573 (840)
T KOG2003|consen  503 NGDLDKAAEFYKEALNNDASCTE---------ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED  573 (840)
T ss_pred             cCcHHHHHHHHHHHHcCchHHHH---------HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhC
Confidence            99999999999999998877743         789999999999999999999999888888999999999999999999


Q ss_pred             HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          196 LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       196 ~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      ...|+++|-++..+-|+++.+...|+.+..+-+...
T Consensus       574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence            999999999999999999999999999877665533

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.74  E-value=5.1e-10  Score=90.23  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecc
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDA  177 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP  177 (594)
                      .+..+..+|..++..|+|++|+.+|+++|+++|.++.         +|+|+|.||.+++ +|.+|+.+|+++|+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678999999999999999999999999999999854         9999999999999 89999999999999998

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.71  E-value=8.6e-09  Score=119.83  Aligned_cols=180  Identities=16%  Similarity=0.081  Sum_probs=127.0

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcc-cccchHHHHHHHhcccccccccch
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQM-NYEFNAAKMLKKQGNELYSEGRFS  120 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~-~~~~~~a~~l~~~Gn~~~~~g~y~  120 (594)
                      +.-.+...+.++....++.+....|.......... +......+..+...+.... ......+..+..+|..++..|+|+
T Consensus        63 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (899)
T TIGR02917        63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLE  142 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHH
Confidence            33334455556665555555544443322211110 0001112233444333332 234556778888999999999999


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh
Q 007653          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (594)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi  200 (594)
                      +|+..|.++++.+|...         .+++.++.+++..|+|++|+..++++++.+|.+..+++.+|.++...|++++|+
T Consensus       143 ~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  213 (899)
T TIGR02917       143 LAQKSYEQALAIDPRSL---------YAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL  213 (899)
T ss_pred             HHHHHHHHHHhcCCCCh---------hhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999888774         378889999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          201 SDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       201 ~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      ..|++++.++|++..++..+..+....++..
T Consensus       214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~  244 (899)
T TIGR02917       214 AAYRKAIALRPNNPAVLLALATILIEAGEFE  244 (899)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence            9999999999998888777777665555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN02789 farnesyltranstransferase

Probab=98.69  E-value=5.5e-09  Score=110.03  Aligned_cols=167  Identities=10%  Similarity=-0.040  Sum_probs=135.1

Q ss_pred             CCchhhhhhhhhcCCChhHHHHHHHHh--hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc--hhHHHHH
Q 007653           51 RPEDLKCAAEQLTHTPPEEVAEIGEKL--ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF--SNALQKY  126 (594)
Q Consensus        51 ~pe~~~~a~e~l~~~~pee~~~~~~~~--~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y--~eAi~~Y  126 (594)
                      ..++......++....|+.......|.  ...-...+..+..-+...+..+++....|..++.++.+.+++  .+++.++
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~  131 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT  131 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence            455666666666677777776655552  211122345666667777778899999999999888777764  7889999


Q ss_pred             HHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh---hhH----HHH
Q 007653          127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRL----EEA  199 (594)
Q Consensus       127 ~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l---g~~----~eA  199 (594)
                      .++|+.+|.+.         .+|.+|+.++..+++|++++++|+++|++||.|..+|+.|+.++..+   |.+    +++
T Consensus       132 ~kal~~dpkNy---------~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        132 RKILSLDAKNY---------HAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHhCcccH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence            99999999984         49999999999999999999999999999999999999999998876   333    578


Q ss_pred             hhhcccccccCCCCChHHHHHhHHHHH
Q 007653          200 VSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       200 i~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      +.++.+++.++|+|..+|..++-+...
T Consensus       203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        203 LKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            999999999999999999999888654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.69  E-value=9.9e-09  Score=118.04  Aligned_cols=123  Identities=8%  Similarity=-0.108  Sum_probs=113.6

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ++.+...+...+++.++...++.+.+.++.+.+++++|+..+++++...|+.+.         +++++|.|+.++|+|++
T Consensus       102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---------~~~~~a~~l~~~g~~~~  172 (694)
T PRK15179        102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---------EILLEAKSWDEIGQSEQ  172 (694)
T ss_pred             cHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhcchHH
Confidence            445677778888889999999999999999999999999999999999999954         88999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                      |+..|++++..+|++++++..+|.+|...|+.++|+..|++|+.+..+..+.
T Consensus       173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            9999999999999999999999999999999999999999999987765443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.1e-08  Score=104.50  Aligned_cols=140  Identities=18%  Similarity=0.164  Sum_probs=119.4

Q ss_pred             hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        78 ~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      ....+++.+.....++.+++.+++.++.|.-+|.+|+..+++..|...|.+|+++.|+.++         .+.-+|.+++
T Consensus       131 ~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------~~~g~aeaL~  201 (287)
T COG4235         131 QPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------ILLGLAEALY  201 (287)
T ss_pred             cCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH
Confidence            3345666777888889999999999999999999999999999999999999999999976         4455555554


Q ss_pred             cc---ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          158 KT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       158 kl---g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      ..   ..-.++...++++|++||.++.+.+.+|..++..|+|.+|+..++..+.+.|.+..-...+......
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            43   3567888999999999999999999999999999999999999999999999887766666554333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.63  E-value=2.4e-09  Score=97.44  Aligned_cols=104  Identities=15%  Similarity=0.050  Sum_probs=94.4

Q ss_pred             HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (594)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l  203 (594)
                      +.|.+++...|...         .+++.++.+++..++|++|+..+++++.++|.++.+++++|.+|...|++++|+.+|
T Consensus         4 ~~~~~~l~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~   74 (135)
T TIGR02552         4 ATLKDLLGLDSEQL---------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY   74 (135)
T ss_pred             hhHHHHHcCChhhH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999988874         368899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       204 ekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      ++++.++|++...+..++.+....++.+.+...
T Consensus        75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~  107 (135)
T TIGR02552        75 ALAAALDPDDPRPYFHAAECLLALGEPESALKA  107 (135)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999998888776654433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.62  E-value=5.2e-09  Score=99.67  Aligned_cols=110  Identities=17%  Similarity=0.076  Sum_probs=92.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..+...|..++..|+|++|+..|.+++.+.++...      ...+|.|+|.+|...|++++|+..|.+++.++|.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            3445778999999999999999999999999988765321      1347899999999999999999999999999999


Q ss_pred             chHHHHHhccchh-------hhhhHH-------HHhhhcccccccCCCCC
Q 007653          179 NVKALYRRGQAYK-------DIGRLE-------EAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       179 ~~ka~~~rg~al~-------~lg~~~-------eAi~~lekAl~l~P~~~  214 (594)
                      +...++++|.+|.       .+|+++       +|+..|++++..+|.+.
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999998       666666       56666667777787643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.61  E-value=6.9e-09  Score=103.65  Aligned_cols=143  Identities=13%  Similarity=-0.009  Sum_probs=113.2

Q ss_pred             HHHHHhhhhcccccch---HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc---
Q 007653           86 ATMRARIDAQMNYEFN---AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT---  159 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~---~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl---  159 (594)
                      +.+...+...+...+.   ....+..+|..++..|+|++|+..|.++++..|+.+..      ..+++++|.||+..   
T Consensus        50 ~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~g~~~~~~~~~  123 (235)
T TIGR03302        50 TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------DYAYYLRGLSNYNQIDR  123 (235)
T ss_pred             HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------HHHHHHHHHHHHHhccc
Confidence            3444444444444443   34678999999999999999999999999999987531      12567777777765   


Q ss_pred             -----ccchhhhhhcceeeeecccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC---C
Q 007653          160 -----KQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---G  214 (594)
Q Consensus       160 -----g~y~eAi~~~~~AL~ldP~~~ka~-----------------~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~  214 (594)
                           +++++|++.|+++++.+|++..++                 +.+|.+|...|++.+|+..|++++...|++   .
T Consensus       124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  203 (235)
T TIGR03302       124 VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATE  203 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchH
Confidence                 899999999999999999986542                 467888999999999999999999998765   4


Q ss_pred             hHHHHHhHHHHHhhhccCCC
Q 007653          215 TIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       215 ~a~~~l~~a~~~l~~~~~a~  234 (594)
                      +++..++.+...++++.++.
T Consensus       204 ~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       204 EALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            78889999988888765443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.61  E-value=9.7e-09  Score=109.88  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=75.4

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch---
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---  180 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~---  180 (594)
                      ..+..+|..++..|+|++|+..|.++++..|...         .++.+++.+|.+.|+|++|++.+.++++.+|.+.   
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  178 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAE---------GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE  178 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchH---------HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence            4556666667777777777777777766555442         2556666666666777777766666666655432   


Q ss_pred             --HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          181 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       181 --ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                        ..++.+|.++...|++++|+.+|+++++++|++..++..++.+....++...
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  232 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAA  232 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHH
Confidence              2445566666666677777777777666666666666666666555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.61  E-value=2.2e-09  Score=85.53  Aligned_cols=64  Identities=28%  Similarity=0.394  Sum_probs=59.1

Q ss_pred             cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      .+|..|++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4577889999999999999999999999999999999999999999999999999999999874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.60  E-value=9.2e-09  Score=102.75  Aligned_cols=118  Identities=17%  Similarity=0.215  Sum_probs=103.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..++.+|..++..|+|++|+..|++++...|..+.      ...+++++|.+|++.++|++|+..|+++++++|+
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            3556778999999999999999999999999999987642      1236799999999999999999999999999998


Q ss_pred             chH---HHHHhccchhhh--------hhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          179 NVK---ALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       179 ~~k---a~~~rg~al~~l--------g~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      ++.   +++.+|.++...        |++++|+..|++++..+|++..++..+..
T Consensus       103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            887   799999999876        89999999999999999999776654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.59  E-value=3.9e-08  Score=115.42  Aligned_cols=108  Identities=7%  Similarity=-0.033  Sum_probs=89.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...+..++..+...|++++|+..|++++...|.++.         +++++|.++...|++++|++.++++++++|++..+
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l  429 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINL  429 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence            456677888888888888888888888888888754         78888888888888888888888888888888888


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  219 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~  219 (594)
                      ++.+|.++..+|+|++|+..++++++.+|+++.+...
T Consensus       430 ~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~  466 (765)
T PRK10049        430 EVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRL  466 (765)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            8888888888888888888888888888888765443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.59  E-value=7.8e-09  Score=97.39  Aligned_cols=121  Identities=12%  Similarity=0.093  Sum_probs=106.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ..+..+.++..|..++..|+|++|...|+-...+++.++.         .|..+|.|+..+++|++|+..|..+..++++
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~  103 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------YTMGLAAVCQLKKQFQKACDLYAVAFTLLKN  103 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            4445677888999999999999999999999999888865         7899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      ++..+|+.|.||..+|+.+.|+..|+.++. .|.+..++..-....+.+..
T Consensus       104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999998 57777766665555555543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.57  E-value=1.6e-08  Score=108.27  Aligned_cols=122  Identities=15%  Similarity=0.027  Sum_probs=56.8

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      .+...+...+...+.....+..++..+.+.|+|++|+..|.++++..|.....    ....+|.+++.+|.+.+++++|+
T Consensus       125 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~  200 (389)
T PRK11788        125 RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQALARGDLDAAR  200 (389)
T ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHHhCCCHHHHH
Confidence            33333333333333444445555555555555555555555555444332110    00112344455555555555555


Q ss_pred             hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      ..|+++++++|++..+++.+|.+|...|++++|+..|++++..+|.
T Consensus       201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  246 (389)
T PRK11788        201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE  246 (389)
T ss_pred             HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence            5555555555555555555555555555555555555555544444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.57  E-value=2.6e-08  Score=116.87  Aligned_cols=130  Identities=12%  Similarity=0.056  Sum_probs=113.9

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (594)
Q Consensus        88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~  167 (594)
                      +...+.......+..+..+..+|..+...|++.+|+.+|+++|+++|.++.         ++.+++.++...+++++|+.
T Consensus        34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~l~~~g~~~eA~~  104 (765)
T PRK10049         34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------YQRGLILTLADAGQYDEALV  104 (765)
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHH
Confidence            334444444445566778999999999999999999999999999999854         77899999999999999999


Q ss_pred             hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      .++++++.+|+++. ++.+|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus       105 ~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~  163 (765)
T PRK10049        105 KAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN  163 (765)
T ss_pred             HHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            99999999999999 999999999999999999999999999999999888887776543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.55  E-value=2e-08  Score=100.33  Aligned_cols=127  Identities=15%  Similarity=0.041  Sum_probs=116.0

Q ss_pred             ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653           96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus        96 ~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l  175 (594)
                      ..+.......++.+|...++.|+|.+|+..+.++..+.|++..         +|.-+|.||.+.|++++|...|.+++++
T Consensus        93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010          93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------AWNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------hhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            3345666677778999999999999999999999999999954         8999999999999999999999999999


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      .|..+.++.|+|..|+-.|+++.|..++..+...-+.+..+..++..+....++..
T Consensus       164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~  219 (257)
T COG5010         164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR  219 (257)
T ss_pred             ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence            99999999999999999999999999999999888889999999999877776543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.46  E-value=1.6e-08  Score=94.90  Aligned_cols=95  Identities=11%  Similarity=0.045  Sum_probs=87.8

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ..+.+|..++..|+|++|+..|+.++.+||.++.+||++|.|+..+|+|++|+..|.+|+.++|+|+....+++.|...+
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            44667777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccchHH
Q 007653          228 MKEDGHHGPRGLLIE  242 (594)
Q Consensus       228 ~~~~~a~~~~~~~ie  242 (594)
                      ++...+....+.+|.
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            988877777776663

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.43  E-value=5.1e-08  Score=99.98  Aligned_cols=110  Identities=13%  Similarity=0.062  Sum_probs=95.3

Q ss_pred             HHHHHHhcccc-cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---
Q 007653          103 AKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---  178 (594)
Q Consensus       103 a~~l~~~Gn~~-~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---  178 (594)
                      ....+..+..+ ++.|+|++|+..|.+.+...|..+.      ...+++++|.+|+..|+|++|+..|.++++..|+   
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            35667777765 6679999999999999999998741      1348899999999999999999999999988776   


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                      .+++++.+|.+|..+|++++|+..|+++++..|+...+..
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            5889999999999999999999999999999998765443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.43  E-value=3.8e-08  Score=80.05  Aligned_cols=69  Identities=30%  Similarity=0.497  Sum_probs=63.7

Q ss_pred             ceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       153 a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                      ..+|++.++|++|++++++++.++|+++..++.+|.+|..+|+|++|+.+|+++++++|++..+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999887665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=1.2e-07  Score=97.22  Aligned_cols=137  Identities=12%  Similarity=0.010  Sum_probs=115.6

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +.+.+.+-|...++..+..++++--.|.-||-.++.+-|+.+|++.|+.--..|+         +|.|+|.|.+-.++|+
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---------Lf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---------LFCNIGLCCLYAQQID  375 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---------HHhhHHHHHHhhcchh
Confidence            3445555566666666777777777888889999999999999999987766655         7999999999999999


Q ss_pred             hhhhhcceeeeec--c-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          164 ECIKVGSEVLAYD--A-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       164 eAi~~~~~AL~ld--P-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      -++..+.+|+..-  | .-++.|||+|.+....|++.-|..+|+-||..||++.+++.+|+.++.+-+.
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~  444 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD  444 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence            9999999998763  2 4578999999999999999999999999999999999999999987665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.40  E-value=1.4e-07  Score=107.67  Aligned_cols=138  Identities=19%  Similarity=0.203  Sum_probs=123.4

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..|.+.|.+.++..+.+..+-.-.|.++...|++.+|+..|.++.+-...+         ..+|+|+|.||+.+|+|..
T Consensus       628 ~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~---------~dv~lNlah~~~e~~qy~~  698 (1018)
T KOG2002|consen  628 QEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF---------EDVWLNLAHCYVEQGQYRL  698 (1018)
T ss_pred             HHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC---------CceeeeHHHHHHHHHHHHH
Confidence            4566777888888899999999999999999999999999999998865555         3489999999999999999


Q ss_pred             hhhhcceeeeec--ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          165 CIKVGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       165 Ai~~~~~AL~ld--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      ||+.|+.+++-.  .++...+..+|.++++.|.|.+|.+++.+|+.+.|.++.+..+++.+..++...-
T Consensus       699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence            999999998653  4678999999999999999999999999999999999999999999988887654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.39  E-value=5.3e-08  Score=104.27  Aligned_cols=103  Identities=11%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..+...|...+...+..+..+.++|.+++..|+|.+|+..|.++|+++|.++.         +|+++|.+|+.+|+|+
T Consensus        17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~---------a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK---------AYLRKGTACMKLEEYQ   87 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHhCCHH
Confidence            3445566666666777778889999999999999999999999999999999854         8999999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~  195 (594)
                      +|+.+|+++++++|++..+++.++.|...+..
T Consensus        88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         88 TAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888777743

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.35  E-value=2.5e-08  Score=79.43  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=58.4

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      .+|..++..|+|++|+.+|+++++..|.++.         +++.+|.|++.+|+|++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE---------AWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788899999999999999999999999855         899999999999999999999999999999875

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.35  E-value=8.5e-08  Score=86.49  Aligned_cols=102  Identities=18%  Similarity=0.193  Sum_probs=90.5

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---  178 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---  178 (594)
                      ....+-.+|..+...|+.+.|++.|.++|.+.|..+         ++|+||+.+|+-+|+.++|++++.+|+++.-+   
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra---------SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr  112 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERA---------SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTR  112 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch---------HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence            345567788889999999999999999999999985         49999999999999999999999999998654   


Q ss_pred             -chHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          179 -NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       179 -~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                       -..+|..||..|..+|+.+.|..+|+.|.++-..
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence             3558999999999999999999999999887544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.35  E-value=9e-08  Score=76.66  Aligned_cols=66  Identities=27%  Similarity=0.361  Sum_probs=60.7

Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      ++.|+|++|+..|++++..+|++..+++.++.||...|++++|...|++++..+|+++.++..+..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            467999999999999999999999999999999999999999999999999999998887776654

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.34  E-value=6.8e-08  Score=99.31  Aligned_cols=92  Identities=18%  Similarity=0.106  Sum_probs=84.4

Q ss_pred             ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      .-+|..|+++|+|++||++|.++|.++|.|+..|.+|+.+|+++++|..|..+|+.|+.++-.+.+++.+.+.+++.|+.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCCCccchH
Q 007653          230 EDGHHGPRGLLI  241 (594)
Q Consensus       230 ~~~a~~~~~~~i  241 (594)
                      -.++...++.++
T Consensus       181 ~~EAKkD~E~vL  192 (536)
T KOG4648|consen  181 NMEAKKDCETVL  192 (536)
T ss_pred             HHHHHHhHHHHH
Confidence            777666555554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4.3e-07  Score=94.25  Aligned_cols=134  Identities=28%  Similarity=0.347  Sum_probs=117.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc----------cccceeeeeecccCceeeeccccchhhhhh
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRTLLLACSLNSMSCYLKTKQYDECIKV  168 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~  168 (594)
                      .....+..++.|+..++.++|..|...|.+++++....+.          .....+...++.|++.|-++.+.|..|+..
T Consensus       218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~  297 (372)
T KOG0546|consen  218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR  297 (372)
T ss_pred             hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence            4445678889999999999999999999999986652211          124556778999999999999999999999


Q ss_pred             cceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       169 ~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      +..+++.++...++||+++.++..+.++++|+++++.+....|++..+...+..+...+.++++
T Consensus       298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~  361 (372)
T KOG0546|consen  298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR  361 (372)
T ss_pred             cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999988888776653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.30  E-value=3.7e-08  Score=101.38  Aligned_cols=128  Identities=18%  Similarity=0.123  Sum_probs=94.1

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+..+......+...++++++...+.++....+...+       ..+|..+|.+|.+.|++++|+.+|+++|+++|++..
T Consensus       109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~  181 (280)
T PF13429_consen  109 DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD  181 (280)
T ss_dssp             ---------H-HHHTT-HHHHHHHHHHHHH-T---T--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH
T ss_pred             ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            3455666667788889999999999887754421111       347888999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      ++..++.++...|+++++...++......|+++.++..++.+...+++.+.+...
T Consensus       182 ~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~  236 (280)
T PF13429_consen  182 ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY  236 (280)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence            9999999999999999988888888888899999999999999998876654433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.29  E-value=3.7e-07  Score=84.89  Aligned_cols=99  Identities=22%  Similarity=0.201  Sum_probs=84.1

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      ...+...++..++..|+|++|+..|.+++...+...      +...++++++.|++..|+|++|+..++. +.-.+-.+.
T Consensus        47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~  119 (145)
T PF09976_consen   47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKAL  119 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHH
Confidence            366788899999999999999999999999764432      2244788999999999999999999976 444556677


Q ss_pred             HHHHhccchhhhhhHHHHhhhccccc
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAH  207 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl  207 (594)
                      ++..+|.+|...|++++|+..|++|+
T Consensus       120 ~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  120 AAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            89999999999999999999999885

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.28  E-value=1.7e-07  Score=100.95  Aligned_cols=69  Identities=10%  Similarity=0.007  Sum_probs=63.8

Q ss_pred             cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH---HHHhccchhhhhhHHHHhhhccccccc
Q 007653          141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA---LYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       141 ~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka---~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      ...-...+|+|+|.+|+++|+|++|+..|++||+++|+++.+   ||++|.||..+|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344446689999999999999999999999999999999965   999999999999999999999999997

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.26  E-value=4.9e-07  Score=97.22  Aligned_cols=119  Identities=18%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...++..+..++..|++++|+..+...+...|+++         .++.-++.++++.+++++|++.+++++.++|+.+..
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------YYLELAGDILLEANKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH
Confidence            33444444444555555555555555444444442         133334444555555555555555555555555555


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      .+++|.+|...|++.+|+..+...+.-+|+|+..|..|..++..++..
T Consensus       377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            555555555555555555555555555555555555555554444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.23  E-value=2.5e-07  Score=99.42  Aligned_cols=133  Identities=16%  Similarity=0.115  Sum_probs=117.8

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      .+.+.++.-+...++++..+-..+.++++.+++++|++.|++++.++|..+         .+++|+|.+|++.|++.+|+
T Consensus       324 ~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~---------~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         324 EALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP---------LLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc---------HHHHHHHHHHHhcCChHHHH
Confidence            444555555557788899999999999999999999999999999999984         48899999999999999999


Q ss_pred             hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      ..+.+.+.-+|+++..|..++.+|..+|+-.+|...+-..+.+.-+...++..+..++++.+
T Consensus       395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~  456 (484)
T COG4783         395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999888877777777777766653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.22  E-value=2e-07  Score=88.75  Aligned_cols=114  Identities=14%  Similarity=0.056  Sum_probs=95.8

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---hHHHHH
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYR  185 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~  185 (594)
                      ..+.+|-.+.|..+...+.+.++.......       ..+|+++|.++...++|++|+..|++++.+.|+.   +.+|++
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~   77 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGEKE-------AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYN   77 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchhHH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHH
Confidence            345677778888888888766655444432       5688999999999999999999999999887763   458999


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +|.+|...|++++|+.+|++++.++|.+...+..++.+...+++
T Consensus        78 lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         78 IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999888888888875553

>TIGR00540 hemY_coli hemY protein

Probab=98.22  E-value=7.8e-07  Score=96.97  Aligned_cols=132  Identities=14%  Similarity=0.004  Sum_probs=106.3

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      +.+..+...+..+...|++++|+..+.++++..|++..       .....-+...++..++...+++.++++++.+|+++
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~-------~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~  333 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA-------ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP  333 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc-------chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence            46788899999999999999999999999999888742       00012223333445788999999999999999999


Q ss_pred             --HHHHHhccchhhhhhHHHHhhhcc--cccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007653          181 --KALYRRGQAYKDIGRLEEAVSDLS--NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (594)
Q Consensus       181 --ka~~~rg~al~~lg~~~eAi~~le--kAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~  240 (594)
                        ..+..+|.++++.|+|++|.++|+  ++++.+|++.. ...++.+..++++...+...+++.
T Consensus       334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence              888899999999999999999999  68889998766 448899988888766654444443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.20  E-value=2.3e-07  Score=85.74  Aligned_cols=109  Identities=17%  Similarity=0.251  Sum_probs=92.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+..++..|...++.|+|.+|++.|+......|..+-      -..+.+.++.+|++.++|++|+..+++-|+++|.|++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            3557899999999999999999999999888776542      2347789999999999999999999999999998865


Q ss_pred             ---HHHHhccchhhhhh---------------HHHHhhhcccccccCCCCChH
Q 007653          182 ---ALYRRGQAYKDIGR---------------LEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       182 ---a~~~rg~al~~lg~---------------~~eAi~~lekAl~l~P~~~~a  216 (594)
                         ++|.+|.++..+..               ..+|+.+|++.+..-|+..-+
T Consensus        83 vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   83 VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             ccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence               79999999999877               777777777777777776543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.17  E-value=5.4e-07  Score=97.14  Aligned_cols=102  Identities=14%  Similarity=0.130  Sum_probs=77.1

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeee-eecccCceeeeccccchhhhhhcceeeeec
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL-ACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~-~~~~N~a~~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      ..++.+..+.++|..|++.|+|++|+.+|+++|+++|++..       . .+|+|+|.||.++|++++|+.++++||++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-------A~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-------AQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46778999999999999999999999999999999999853       1 359999999999999999999999999973


Q ss_pred             ccchHHHHHhcc---chhhhhhHHHHhhhccccc
Q 007653          177 AKNVKALYRRGQ---AYKDIGRLEEAVSDLSNAH  207 (594)
Q Consensus       177 P~~~ka~~~rg~---al~~lg~~~eAi~~lekAl  207 (594)
                      +...+ +.....   .+....+|++-++.+.++-
T Consensus       143 n~~f~-~i~~DpdL~plR~~pef~eLlee~rk~G  175 (453)
T PLN03098        143 NLKFS-TILNDPDLAPFRASPEFKELQEEARKGG  175 (453)
T ss_pred             chhHH-HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence            22221 222222   2333445555555444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.17  E-value=7.4e-07  Score=94.23  Aligned_cols=107  Identities=11%  Similarity=-0.042  Sum_probs=93.0

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus        97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      ...+.....+..+|..+...|+|++|+..|++++++.|.++         .++..++.+|+..|++++|+..+.+++.+.
T Consensus       108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804         108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------WAVHAVAHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------HHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence            34566667778889999999999999999999999999984         378899999999999999999999999988


Q ss_pred             ccch----HHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          177 AKNV----KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       177 P~~~----ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      |..+    ..|+.++.+|...|++++|+..|++++...|.
T Consensus       179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            7432    45678999999999999999999999877763

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.15  E-value=4.3e-07  Score=73.69  Aligned_cols=84  Identities=32%  Similarity=0.393  Sum_probs=77.0

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      +++++|.+++..++|++|+..+.+++++.|.+..+++.+|.+|...+++++|+.+|++++.+.|.+..++..++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999998888888887777


Q ss_pred             hhcc
Q 007653          228 MKED  231 (594)
Q Consensus       228 ~~~~  231 (594)
                      ++..
T Consensus        82 ~~~~   85 (100)
T cd00189          82 GKYE   85 (100)
T ss_pred             HhHH
Confidence            6543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.14  E-value=4.8e-07  Score=102.82  Aligned_cols=117  Identities=12%  Similarity=0.086  Sum_probs=67.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +..+..++|.+|.+|++++|+..+.++|..+|..+.         +|+.+|.||..+|+.++|+.....|-.++|.+...
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~  209 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL  209 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence            556666666666666666666666666666666633         55666666666655555555555555555555555


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      |.+++.....+|.++.|+-+|.+|++.+|.+.+...+...+..+.+
T Consensus       210 W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G  255 (895)
T KOG2076|consen  210 WKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTG  255 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC
Confidence            5555555555555555555555555555555444444444433333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.14  E-value=4.8e-07  Score=91.52  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=98.2

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---h
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V  180 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~  180 (594)
                      +.+++.+..+++.|+|.+|+..|...|+..|+.+-      ...+++++|.|++.+|+|++|...|..+++-.|++   +
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp  215 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP  215 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence            45899999999999999999999999999988752      35689999999999999999999999999887765   5


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                      ++++-+|.++.++|+.++|...|+++++--|+.+.+..
T Consensus       216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            67999999999999999999999999999998876544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.11  E-value=3.1e-07  Score=73.53  Aligned_cols=67  Identities=25%  Similarity=0.297  Sum_probs=59.3

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhcc
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~  188 (594)
                      +++.|+|++|+..|++++..+|.+..         +++.++.||++.|+|++|...+.+++..+|+++.++.-++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE---------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH---------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            35789999999999999999999854         88999999999999999999999999999999877766543

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.11  E-value=5.4e-07  Score=91.48  Aligned_cols=124  Identities=14%  Similarity=0.131  Sum_probs=102.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  179 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~--  179 (594)
                      .++.++..|..++..|+|++|+..|++++...|..+.      ...+.+++|.+|++.++|.+|+..+++.|+++|++  
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            4667889999999999999999999999999887753      13356899999999999999999999999999877  


Q ss_pred             -hHHHHHhccchhhhh------------------hHHHHhhhcccccccCCCC---ChHHHHHhHHHHHhhhcc
Q 007653          180 -VKALYRRGQAYKDIG------------------RLEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED  231 (594)
Q Consensus       180 -~ka~~~rg~al~~lg------------------~~~eAi~~lekAl~l~P~~---~~a~~~l~~a~~~l~~~~  231 (594)
                       +.++|.+|.++..++                  ...+|+..|++.+...|+.   +++...+..++.++.+++
T Consensus       105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e  178 (243)
T PRK10866        105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  178 (243)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence             457999998865543                  2467999999999999986   467777777777776543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.10  E-value=2.6e-06  Score=99.99  Aligned_cols=178  Identities=8%  Similarity=-0.023  Sum_probs=129.6

Q ss_pred             HhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccch
Q 007653           42 IATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS  120 (594)
Q Consensus        42 ~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~  120 (594)
                      +++...++.+.+.....++++....|........- .......+...+...+.+.+...+.....+..+|..+...|+|+
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence            36666777777777777777777777753211100 00011133344555555555444555667777788999999999


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh
Q 007653          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (594)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi  200 (594)
                      +|++.|+++++.+|.++.         ++.-++.+|...+++++|++.+.+++.++|.+... ..++.++...+++.+|+
T Consensus       120 ~Aiely~kaL~~dP~n~~---------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL  189 (822)
T PRK14574        120 QALALWQSSLKKDPTNPD---------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL  189 (822)
T ss_pred             HHHHHHHHHHhhCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence            999999999999999965         56677899999999999999999999999985554 44455555577787799


Q ss_pred             hhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          201 SDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       201 ~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      ..|+++++++|++.++...+-.+...++-
T Consensus       190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        190 QASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999887777766555443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.09  E-value=5e-07  Score=100.74  Aligned_cols=124  Identities=12%  Similarity=0.033  Sum_probs=108.2

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      ...+.+.+..|+..+.+++|.++..+++..++++|-...         .|+++|.|+++++++..|+.+|.+.+.++|++
T Consensus       482 ~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~  552 (777)
T KOG1128|consen  482 YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN  552 (777)
T ss_pred             hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence            334556777888888899999999999999999888744         89999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      ..+|.|++.+|..+++..+|...+.+|++.+-++..+|.++-.+...++....
T Consensus       553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed  605 (777)
T KOG1128|consen  553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED  605 (777)
T ss_pred             hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence            99999999999999999999999999999998888888888777666555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.09  E-value=4.7e-07  Score=73.55  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (594)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg  187 (594)
                      .+.+++.++|++|+.++++++.++|.++         .+|..+|.||+++|+|.+|+.+++++++++|++..+...++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDP---------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccc---------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            4568899999999999999999999985         48999999999999999999999999999999988766554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.09  E-value=3.9e-06  Score=93.98  Aligned_cols=126  Identities=10%  Similarity=0.029  Sum_probs=96.2

Q ss_pred             CChHHHHHHHHhhhhcccccchHHHHHHHhccccccc--------ccchhHHHHHHHhhhc--cccccccccceeeeeec
Q 007653           80 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE--------GRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACS  149 (594)
Q Consensus        80 ~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~--------g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~  149 (594)
                      ...+++..+...+++.++..++.+.++-.++..+...        .+...+.....+++.+  ++..+         .+|
T Consensus       353 ~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~---------~~~  423 (517)
T PRK10153        353 GDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP---------RIY  423 (517)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh---------HHH
Confidence            3555666677777777777777666666655544332        2344556666666554  33332         256


Q ss_pred             ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      .-+|..+...|++++|...+++|+.++| ++.+|+.+|.+|...|++++|++.|++|+.++|.++.
T Consensus       424 ~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        424 EILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            6778888888999999999999999999 5889999999999999999999999999999999875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.08  E-value=8.6e-07  Score=88.78  Aligned_cols=128  Identities=16%  Similarity=0.167  Sum_probs=108.2

Q ss_pred             hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653           94 AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (594)
Q Consensus        94 a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL  173 (594)
                      +....+++.... .+..+.++..|+-+.++.+..+++...|.+..         +..-++..+++.|+|.+|+..+.++.
T Consensus        58 ~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~---------ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          58 AAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRE---------LLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             HHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHH---------HHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            334445655666 77888889999999988888887777777643         33337888899999999999999999


Q ss_pred             eecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       174 ~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      .++|+++++|.-+|.+|.++|++++|...|.+++++.|.++.+..+++-....-++.+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~  185 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE  185 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence            9999999999999999999999999999999999999999999999998766665544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.06  E-value=1e-06  Score=98.87  Aligned_cols=110  Identities=18%  Similarity=0.168  Sum_probs=91.8

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh--hcceeee
Q 007653           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK--VGSEVLA  174 (594)
Q Consensus        97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~--~~~~AL~  174 (594)
                      ...+-.+..|+..|..+..+|++.+|.+.|..|+.++|+++         .+...+|.||.+.|+..-|..  ....+++
T Consensus       678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------~s~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------PSMTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------HHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            34456677788888888888888999999999988888884         467788888888887777777  8888888


Q ss_pred             ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       175 ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      +||.|.++||.+|.++..+|+.++|.++|..|+.+++.++.
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            89999999999999999999999999999888888887764

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.06  E-value=1.9e-06  Score=89.07  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=69.1

Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      +..|.+++||+.|+.+|+++|..+..|-.|+.+|+.+++...|+.+|..|++++|+...-+...+.++..++....+
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            34577999999999999999999999999999999999999999999999999999988888888887777765543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.06  E-value=7e-07  Score=104.70  Aligned_cols=126  Identities=13%  Similarity=0.040  Sum_probs=100.7

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (594)
Q Consensus        82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~  161 (594)
                      ..++..|...+.+.++..+..+........++...|++++|+.++++++  +|....       ...+..+|.+|...|+
T Consensus        47 ~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-------~~~llalA~ly~~~gd  117 (822)
T PRK14574         47 AGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-------SRGLASAARAYRNEKR  117 (822)
T ss_pred             CCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-------HHHHHHHHHHHHHcCC
Confidence            3344566677777777777765444466666777799999999999999  343321       2233444779999999


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                      |++|++.|+++++++|+++.+++.++.+|...+++++|+..+++++..+|++...
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            9999999999999999999999999999999999999999999999999986543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.05  E-value=5.9e-07  Score=88.59  Aligned_cols=123  Identities=16%  Similarity=0.213  Sum_probs=97.2

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch-
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  180 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~-  180 (594)
                      .++.++..|..++..|+|.+|+..|++.+...|..+.      ...+.+.++.+|++.++|.+|+..+++.|+..|+++ 
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            3568999999999999999999999999999887653      134778999999999999999999999999999865 


Q ss_pred             --HHHHHhccchhhhh-----------hHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhc
Q 007653          181 --KALYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKE  230 (594)
Q Consensus       181 --ka~~~rg~al~~lg-----------~~~eAi~~lekAl~l~P~~~---~a~~~l~~a~~~l~~~  230 (594)
                        .++|.+|.+++.+.           ...+|+..|+..+...|+.+   .+...+..+...+.++
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~  143 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH  143 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence              58999999976654           44589999999999999875   4556666776666543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.05  E-value=6.4e-07  Score=85.71  Aligned_cols=86  Identities=15%  Similarity=0.148  Sum_probs=77.5

Q ss_pred             eeecccCceeeeccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      ..+++++|.+|...|+|++|+.+|.+++++.|+.   +.+++++|.+|..+|++++|+..|++++.++|++...+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            5578999999999999999999999999887763   5799999999999999999999999999999999999888888


Q ss_pred             HHHHhhhcc
Q 007653          223 AKEILMKED  231 (594)
Q Consensus       223 a~~~l~~~~  231 (594)
                      +...+++..
T Consensus       115 ~~~~~g~~~  123 (172)
T PRK02603        115 IYHKRGEKA  123 (172)
T ss_pred             HHHHcCChH
Confidence            887776543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.6e-06  Score=86.44  Aligned_cols=120  Identities=15%  Similarity=0.051  Sum_probs=77.9

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      +......+-.|..+-..|+|++|+++|...|+-+|.+.         ..|...-++...+|+-.+||+....-++.-+.+
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~---------v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D  153 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT---------VIRKRKLAILKAQGKNLEAIKELNEYLDKFMND  153 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh---------HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence            55556667777788888888888888888888887763         244444444445555556666666666666666


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      .++|..++..|...|+|++|.-+|+..+-+.|.++-...+++++..-++
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            6666666666666666666666666666666666666666655555444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.02  E-value=3.3e-06  Score=86.74  Aligned_cols=130  Identities=14%  Similarity=0.028  Sum_probs=112.2

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (594)
Q Consensus        88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~  167 (594)
                      +.--|+..++--...++.+.++|.+++-.++|+-++..|.+|+........      ...+|+|++.+..-.|++.-|.+
T Consensus       343 AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~------aaDvWYNlg~vaV~iGD~nlA~r  416 (478)
T KOG1129|consen  343 ALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ------AADVWYNLGFVAVTIGDFNLAKR  416 (478)
T ss_pred             HHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch------hhhhhhccceeEEeccchHHHHH
Confidence            334455555555666889999999999999999999999999987653321      25699999999999999999999


Q ss_pred             hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +++-+|.-|+++..++.|+|..-.+.|+.++|...|..|-.+.|+-.+...+++.+
T Consensus       417 cfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  417 CFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            99999999999999999999999999999999999999999999987777766554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.01  E-value=5.2e-07  Score=81.59  Aligned_cols=99  Identities=21%  Similarity=0.085  Sum_probs=86.3

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---ch
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NV  180 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~  180 (594)
                      +.+++.+..+-..|+.++|+.+|++++......+.      ...+++++|.+|..+|++++|+..+++++.-.|+   +.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH
Confidence            46788889999999999999999999996544321      2348899999999999999999999999998888   88


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                      ...+.++.++..+|++++|+..+-.++.
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888999999999999999999987764

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=6.5e-06  Score=82.22  Aligned_cols=136  Identities=13%  Similarity=0.058  Sum_probs=116.6

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ...|..-|..-+...+...-.++.+--++..+|+-.+||+...+.++.++.+++         +|.-++..|+..++|++
T Consensus       102 ~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---------AW~eLaeiY~~~~~f~k  172 (289)
T KOG3060|consen  102 YKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---------AWHELAEIYLSEGDFEK  172 (289)
T ss_pred             hhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhHhHHHH
Confidence            345556666666666766667777777778888889999999999999999976         89999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg---~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      |+-+|++.+-+.|.++-++-++|.+++.+|   +++-|.++|+++++++|.+...+..+-.+...+.+
T Consensus       173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998776   57779999999999999888888888777777653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=3.5e-06  Score=82.35  Aligned_cols=108  Identities=20%  Similarity=0.096  Sum_probs=101.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..+++.|+.|-..|-+.-|.-.|++++.+.|..++         +++-+|..+...|+|+.|.+.|+.++++||.
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------HHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            4456788999999999999999999999999999999976         7888999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      +--++.|||.+++..|||.-|.+++.+-..-||+++-
T Consensus       132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            9999999999999999999999999999999999874

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.99  E-value=2.8e-06  Score=97.40  Aligned_cols=138  Identities=17%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+.+....+...+..+..+++-+|-.|+|..+...+..++....+.+      +..-.|+++|.+|..+|+|++
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~------~~aes~Y~~gRs~Ha~Gd~ek  325 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS------IKAESFYQLGRSYHAQGDFEK  325 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHHHHhhccHHH
Confidence            33444555555666777888888899999999999999999888887653322      223357889999999999999


Q ss_pred             hhhhcceeeeecccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          165 CIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      |..+|.+++..++++ .-.++.+|+.|...|+++.|+.+|++.++..|++.+....|+.+.....
T Consensus       326 A~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  326 AFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            999999999999888 7788889999999999999999999999999999888888888766653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.98  E-value=6.1e-07  Score=99.34  Aligned_cols=148  Identities=18%  Similarity=0.129  Sum_probs=118.8

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--  175 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--  175 (594)
                      ..+..+..+...|..|...++|.+|+..|.+|+.+....-. +.++-.+.++.|++.+|++.|+|++|..+|++|++|  
T Consensus       236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~  314 (508)
T KOG1840|consen  236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYE  314 (508)
T ss_pred             cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence            35666677778999999999999999999999987653221 223334668899999999999999999999999876  


Q ss_pred             ------cccchHHHHHhccchhhhhhHHHHhhhcccccccCC-----CC---ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          176 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-----DD---GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       176 ------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P-----~~---~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                            .|.-+..+.+.+.++...++|++|+.+|.+++++.-     ++   ..++.+++.+....++++++.+-++..|
T Consensus       315 ~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai  394 (508)
T KOG1840|consen  315 KLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI  394 (508)
T ss_pred             HhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence                  356677899999999999999999999999988742     23   4677888888888888887766666666


Q ss_pred             HHHHH
Q 007653          242 EEITE  246 (594)
Q Consensus       242 ee~~e  246 (594)
                      +...+
T Consensus       395 ~~~~~  399 (508)
T KOG1840|consen  395 QILRE  399 (508)
T ss_pred             HHHHh
Confidence            54443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.94  E-value=1e-06  Score=84.06  Aligned_cols=98  Identities=21%  Similarity=0.189  Sum_probs=77.7

Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeecccCceeeecc----------ccchhhhhhcceeeeecccchHHHHHhcc
Q 007653          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (594)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl----------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~  188 (594)
                      |+.|.+.|+.....+|.+++         .++|-|.+++.+          .-|++|+.-|++||.|+|+..++++.+|.
T Consensus         7 FE~ark~aea~y~~nP~Dad---------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD---------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHH---------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            67788899999999998854         566666666655          34678999999999999999999999999


Q ss_pred             chhhhhh-----------HHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          189 AYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       189 al~~lg~-----------~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      ||..++.           |++|..+|++|..++|+|...+.-|+.+..
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            9998775           888999999999999999988888877743

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.94  E-value=4.5e-06  Score=95.08  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=110.4

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.|..-+...++..+..+.+|+.+|.+|-.+|+..+++..+..|-.++|.+++         .|..++....++|.+.
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------LWKRLADLSEQLGNIN  224 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------HHHHHHHHHHhcccHH
Confidence            4455666666667778888999999999999999999999999999999999965         8999999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                      +|+-+|.+||.++|.+.+.++++...|.+.|++..|...|.+.+.++|
T Consensus       225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.92  E-value=4.6e-06  Score=90.69  Aligned_cols=128  Identities=20%  Similarity=0.064  Sum_probs=103.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .++.+..+...+..+...|++++|.....++++..+ ++.         +..-++.  +..++++++++.+++.++.+|+
T Consensus       259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~---------l~~l~~~--l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER---------LVLLIPR--LKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH---------HHHHHhh--ccCCChHHHHHHHHHHHhhCCC
Confidence            345677888889999999999999999999998433 321         1112222  2459999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~  239 (594)
                      ++..++.+|.++...++|++|.++|+++++++|++.. +..+..+.++.++.+.+...++.
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~  386 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRD  386 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999755 45788888888776655444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.90  E-value=8.1e-07  Score=78.03  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=75.0

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR  221 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~~a~~~l~  221 (594)
                      .++++|.++.+.|+|++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++..+|++   ..++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            57888999999999999999999999999877   6799999999999999999999999999999986   45677778


Q ss_pred             HHHHHhhhccCC
Q 007653          222 DAKEILMKEDGH  233 (594)
Q Consensus       222 ~a~~~l~~~~~a  233 (594)
                      .+...+++...+
T Consensus        84 ~~~~~~~~~~~A   95 (119)
T TIGR02795        84 MSLQELGDKEKA   95 (119)
T ss_pred             HHHHHhCChHHH
Confidence            887776654443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.89  E-value=7.1e-06  Score=90.71  Aligned_cols=147  Identities=16%  Similarity=0.078  Sum_probs=117.9

Q ss_pred             hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceee
Q 007653           77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  156 (594)
Q Consensus        77 ~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~  156 (594)
                      +......++..-.+-+++.+...++..+.+--+|..+...|+-++|..+...++..++..+         .||--+|.++
T Consensus        15 lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~---------vCwHv~gl~~   85 (700)
T KOG1156|consen   15 LKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH---------VCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc---------hhHHHHHHHH
Confidence            3333444445555556666667788888888888888888888888888888888877773         4888888888


Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      +..++|++||.+|+.||.++|+|...|+-++....++++|+-....-.+.+++.|.+..-|..+..+...++.+..
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888887777654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.86  E-value=3.4e-07  Score=75.56  Aligned_cols=64  Identities=22%  Similarity=0.344  Sum_probs=56.5

Q ss_pred             eeecccCceeeeccccchhhhhhcceeeeec-------ccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      +.+|.|+|.+|+.+|+|++|+.+|++++++.       |..+.+++++|.+|..+|++++|+++|++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4578999999999999999999999999762       345889999999999999999999999999865

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=5.1e-06  Score=89.78  Aligned_cols=109  Identities=20%  Similarity=0.152  Sum_probs=98.2

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc---cchhhhhhcceeee
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLA  174 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg---~y~eAi~~~~~AL~  174 (594)
                      ..+..++..+..||..+..+....||..|.+++...|..         ..+|.|++.++++.+   +.-.|+.+|..||+
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr  439 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------IYLLENRAAALMKRKWRGDSYLALRDCHVALR  439 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------hHHHHhHHHHHHhhhccccHHHHHHhHHhhcc
Confidence            456778899999999999999999999999999988877         569999999998864   67789999999999


Q ss_pred             ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       175 ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      +||...++||+++.++..++++.+|+.+...+....|.+..
T Consensus       440 ln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  440 LNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             CChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            99999999999999999999999999998888878885543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.81  E-value=1.4e-05  Score=88.39  Aligned_cols=119  Identities=14%  Similarity=0.053  Sum_probs=108.7

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .++.....+|..++|...+...+..|.-.|..++         ...-.|..+..+|+-++|...+..++..|+.+..+|+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH   79 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH   79 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------hHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence            5666777789999999999999999998888765         4566788888999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      .+|..+..-++|++|+++|+.|+.++|+|..++.-+..++.+++++++
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999988875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.79  E-value=6.7e-06  Score=86.94  Aligned_cols=141  Identities=11%  Similarity=-0.041  Sum_probs=90.6

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeecccCceeeeccccc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      +++.+...+.+.+...+.....+.. +..++..+++..+...+.+++.. .+..+      ....++.+++.++...|+|
T Consensus        58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP------DYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC------CcHHHHHHHHHHHHHcCCH
Confidence            4445555566666666665555554 44444444444333334343321 11111      1133456778888889999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH----HHHHhHHHHHhhhcc
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI----ADVLRDAKEILMKED  231 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a----~~~l~~a~~~l~~~~  231 (594)
                      ++|+..|+++++++|+++.+++.+|.+|...|++++|+.+|++++.+.|.++..    +..+..+....++..
T Consensus       131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~  203 (355)
T cd05804         131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE  203 (355)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999899999999999999999999999999888754332    234555555554433

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.79  E-value=6.2e-06  Score=96.41  Aligned_cols=144  Identities=10%  Similarity=0.029  Sum_probs=87.8

Q ss_pred             cCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc
Q 007653           63 THTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG  141 (594)
Q Consensus        63 ~~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~  141 (594)
                      .+.+|.......+-+... ...+++.+.......+.+.++....++-.|..++..+++.++...  .++...+....-..
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence            445555555544444433 334455566556666666777777777777777777777666665  55555554421111


Q ss_pred             ceeee----------eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          142 RTLLL----------ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       142 ~~l~~----------~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      .+...          .+++.+|.||-++|++++|...|+++|++||+|+.++.++|..|... ++++|+.++.+|+..
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            11111          35556677777777777777777777777777777777777777766 777777777777665

>PRK11906 transcriptional regulator; Provisional

Probab=97.75  E-value=1.4e-05  Score=86.46  Aligned_cols=129  Identities=12%  Similarity=-0.055  Sum_probs=107.7

Q ss_pred             hhcCChHHHHHHHHhhhhcc---cccchHHHHHHHhcccccc---------cccchhHHHHHHHhhhcccccccccccee
Q 007653           77 LANASPEEIATMRARIDAQM---NYEFNAAKMLKKQGNELYS---------EGRFSNALQKYLLAKKNLQGIHSSEGRTL  144 (594)
Q Consensus        77 ~~~~~~~el~aa~~~~~a~~---~~~~~~a~~l~~~Gn~~~~---------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l  144 (594)
                      ++...++..+++..-+.+.+   ...+..+.+|.-++.+++.         ...-.+|+++-.+|++++|.++.      
T Consensus       266 ~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------  339 (458)
T PRK11906        266 LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------  339 (458)
T ss_pred             hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH------
Confidence            45556667777777777777   6677767666666655432         34456889999999999999964      


Q ss_pred             eeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       145 ~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                         ++..+|.++.-.++++.|+..+++|+.++|+++.+||.+|.++...|+.++|++.+++|++++|...
T Consensus       340 ---a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        340 ---ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             ---HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence               7888888888889999999999999999999999999999999999999999999999999999753

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.75  E-value=8.5e-07  Score=73.13  Aligned_cols=74  Identities=18%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l  175 (594)
                      +..+..+.++|.+++..|+|++|+.+|++++++......  .....+.++.|+|.||..+|+|++|++.+++++++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            355778999999999999999999999999987433321  12234678999999999999999999999999865

...

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=2.6e-05  Score=82.39  Aligned_cols=128  Identities=14%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      .+..-..+.++.+++..+++.-+|+.+...++.++|+..|+.|+.+.|+.         ..+|--+-.||+..++++||.
T Consensus       318 rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------L~~Y~GL~hsYLA~~~~kEA~  388 (564)
T KOG1174|consen  318 RALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------LEIYRGLFHSYLAQKRFKEAN  388 (564)
T ss_pred             HHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------HHHHHHHHHHHHhhchHHHHH
Confidence            33444444555677788899999999999999999999999999998887         347888888888888888887


Q ss_pred             hhcceeeeecccchHHHHHhc-cchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          167 KVGSEVLAYDAKNVKALYRRG-QAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg-~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      .....+++.-|.+++++-..| .++. .----++|.+.|+++|++.|.+..+...+.++
T Consensus       389 ~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL  447 (564)
T KOG1174|consen  389 ALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL  447 (564)
T ss_pred             HHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence            777666666666666666665 3332 22334566666677777776665555444444

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.74  E-value=1.4e-05  Score=91.84  Aligned_cols=159  Identities=14%  Similarity=0.027  Sum_probs=125.5

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc-----------------------
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-----------------------  139 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~-----------------------  139 (594)
                      ....-+...+.+.++..+.-+..+--+|..|...-+...|..+|.+|+++++.+...                       
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            345556666777777777788888888888877778888888888888888766430                       


Q ss_pred             ----ccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          140 ----EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       140 ----e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                          .......-.|..||..|++-+++..|+.+++.|++.+|.+..+|.-+|.+|...|+|..|++.|.+|..++|.+.-
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y  631 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY  631 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence                0011122356679999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHhHHHHHhhhccCCCCCccchH
Q 007653          216 IADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       216 a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      .+......+...++++++....+.++
T Consensus       632 ~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  632 GRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            77777777777777776555544444

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.73  E-value=5.4e-06  Score=80.11  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=78.0

Q ss_pred             ceeeeccccchhhhhhcceeeeecccc-----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          153 MSCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       153 a~~~~klg~y~eAi~~~~~AL~ldP~~-----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      |.-+++-|+|++|...|.+||.+.|..     ...|.+||.|+..++.++.||.+|.+|+++.|.+..+..+...+++++
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            344677899999999999999999864     458999999999999999999999999999999999999999999998


Q ss_pred             hhccCCCCCccchH
Q 007653          228 MKEDGHHGPRGLLI  241 (594)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (594)
                      ..+..+...+.+++
T Consensus       182 ek~eealeDyKki~  195 (271)
T KOG4234|consen  182 EKYEEALEDYKKIL  195 (271)
T ss_pred             hhHHHHHHHHHHHH
Confidence            87777776666554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.72  E-value=6.6e-06  Score=96.20  Aligned_cols=130  Identities=17%  Similarity=0.104  Sum_probs=104.7

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc---------ccceeeeeecccCceeeeccccchhhhh
Q 007653           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------EGRTLLLACSLNSMSCYLKTKQYDECIK  167 (594)
Q Consensus        97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~---------e~~~l~~~~~~N~a~~~~klg~y~eAi~  167 (594)
                      .|.+...+++..+...+...++|++|+..+..+++..|.....         ....+.-.+.+++......-.++ .+++
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve  103 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE  103 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence            4678888999999999999999999999999999999976530         11122223334566666666677 6777


Q ss_pred             hcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ++...+...+.+-.+++.+|.||-.+|++++|...|+++++++|+|+.+..+++......
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            776667668899999999999999999999999999999999999999888887765554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.72  E-value=1.9e-05  Score=88.44  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=96.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ++..+..|..+|.+.....-|++|.++.+..-               ..+...+|...+..++|.++..+++..++++|-
T Consensus       453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~s---------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl  517 (777)
T KOG1128|consen  453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYIS---------------ARAQRSLALLILSNKDFSEADKHLERSLEINPL  517 (777)
T ss_pred             CCCcchhHHHhhhhccChHHHHHHHHHhhhhh---------------HHHHHhhccccccchhHHHHHHHHHHHhhcCcc
Confidence            45556666666766666555555555544321               124455666677789999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      ....||++|.|...++++..|+++|.+++.++|++.+.|.++..++-++++.++
T Consensus       518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~r  571 (777)
T KOG1128|consen  518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKR  571 (777)
T ss_pred             chhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHH
Confidence            999999999999999999999999999999999999999999999888876543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=1.1e-05  Score=85.47  Aligned_cols=98  Identities=11%  Similarity=-0.019  Sum_probs=84.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...+.|++.++.+.++|..|+.++.++|.++|.+         ..+++.+|.||+.+++|+.|+.+|.+|++++|.|-.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N---------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~  327 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN---------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA  327 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence            4578899999999999999999999999999998         4589999999999999999999999999999999888


Q ss_pred             HHHhccchhhhhhHHHH-hhhccccccc
Q 007653          183 LYRRGQAYKDIGRLEEA-VSDLSNAHEV  209 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eA-i~~lekAl~l  209 (594)
                      ..-+..+..+..++.+. .+.|.+.+..
T Consensus       328 ~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  328 RAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            87777777777666554 5555555443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=5.7e-06  Score=90.26  Aligned_cols=242  Identities=13%  Similarity=-0.011  Sum_probs=170.4

Q ss_pred             cChhHHHH-hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccc
Q 007653           35 ANPELMRI-ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNE  112 (594)
Q Consensus        35 ~~p~l~r~-A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~  112 (594)
                      .|++++.. |-..+..-+-.+...+.+.+-...|-+.....-++..+ ...+-..+..--++-++..|..+-.|+..|..
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            35564433 44445555555555555555555544433332222211 00011122233344455678889999999999


Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~  192 (594)
                      |+-.|++.+|..+|.|+..++|.+         ..+|+-.|..|--.++.+.|+..|..|-++-|..-...+.+|.=|.+
T Consensus       322 Yl~i~k~seARry~SKat~lD~~f---------gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~  392 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDPTF---------GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR  392 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCccc---------cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence            999999999999999999999999         56999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhhcccccCCcCCcchhhhhhhcCCCC
Q 007653          193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPS  272 (594)
Q Consensus       193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~e~~~~~~~~~~s~s~~~~~~~~~~~~~  272 (594)
                      .+.++-|.+.|..|+.+.|.++-+...++.+...-+.+.++..-....++.+.+ ....+.     .+.           
T Consensus       393 t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~-~~~e~~-----~w~-----------  455 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS-VLNEKI-----FWE-----------  455 (611)
T ss_pred             hccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh-cccccc-----chh-----------
Confidence            999999999999999999999999999999877777666654444444422111 110000     000           


Q ss_pred             CcccccCCCCCCCCCCCCCCCCCChHhHHHHHhhhhcc
Q 007653          273 KSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNA  310 (594)
Q Consensus       273 ~~~~~~~~~~~~~~p~~l~~l~~~Pe~~~~~~~~i~~~  310 (594)
                              ............++++.|++.-+++.+..-
T Consensus       456 --------p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  456 --------PTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             --------HHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence                    011223345567788999999999998843

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=2e-05  Score=83.72  Aligned_cols=129  Identities=15%  Similarity=0.104  Sum_probs=87.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc----------cccce---------------eeeeecccCc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRT---------------LLLACSLNSM  153 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~---------------l~~~~~~N~a  153 (594)
                      ..+.++.+..++++|-...+...||+.|.++..+.|++|.          .++..               ..+...-+++
T Consensus       554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            4445556666666666666666666666666666665542          00000               0022334577


Q ss_pred             eeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       154 ~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ..|+..+=++++|.++++|--+.|+..+-....+.|+.+.|+|..|++.|+.....-|.+.+..+.|-.+.-.+
T Consensus       634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dl  707 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccc
Confidence            77888888888888888888888888888888888888888888888888888888888877766665554333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.64  E-value=4.7e-06  Score=77.50  Aligned_cols=127  Identities=17%  Similarity=0.093  Sum_probs=98.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---  179 (594)
                      +...+......+..+++..+...+.+.+.-.|..+-      -..+++.+|.+++..|+|++|+..|+.++...|+.   
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~   84 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY------AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence            344555555566788899998889999887777631      13467889999999999999999999999877654   


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      ..+.++++.++...|+|++|+..++.. .-.+-.+.++..++.+..+.++..++...
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            568999999999999999999999763 33334567788888888887776554433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.64  E-value=7.5e-06  Score=92.02  Aligned_cols=127  Identities=16%  Similarity=-0.011  Sum_probs=110.6

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~  183 (594)
                      ..|...+..+.+.+..++|..+..++-.++|..+         ..|+-+|.++...|.+.+|.+.|..|+.+||+++...
T Consensus       651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~---------~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~  721 (799)
T KOG4162|consen  651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA---------SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM  721 (799)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH---------HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH
Confidence            3444556666777778888889999999988874         4889999999999999999999999999999999999


Q ss_pred             HHhccchhhhhhHHHHhh--hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653          184 YRRGQAYKDIGRLEEAVS--DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (594)
Q Consensus       184 ~~rg~al~~lg~~~eAi~--~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~  239 (594)
                      .-+|.+|...|+-.-|..  .+..++++||.+.++|..++++.+++++.+.+...+..
T Consensus       722 ~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a  779 (799)
T KOG4162|consen  722 TALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA  779 (799)
T ss_pred             HHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            999999999998888888  99999999999999999999999999887655444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.63  E-value=6.3e-06  Score=69.17  Aligned_cols=73  Identities=27%  Similarity=0.359  Sum_probs=64.4

Q ss_pred             cccchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          159 TKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      .++|+.|+..++++++.+|.  +..+++.+|.||+..|+|++|+..+++ +.++|.+..++..++.+...+++++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e   76 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE   76 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence            57899999999999999995  577888899999999999999999999 88999888888899999999887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.60  E-value=1.1e-05  Score=82.99  Aligned_cols=126  Identities=17%  Similarity=0.097  Sum_probs=98.0

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      ...++..+-++|-..++|++||+.-++...+.+..-.    -..+.+|.-++..+....+++.|+..+.+|+..||+++.
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR  215 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR  215 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence            4456777777888888888888887777766655421    112335666666667778888999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHHHhhhcc
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKED  231 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~-~~a~~~l~~a~~~l~~~~  231 (594)
                      +-.-+|.++...|+|+.|++.|+.+++.+|++ +++...|.+|+..+++..
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999999999999987 677788888887776644

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.58  E-value=1.5e-05  Score=55.61  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             hcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999974

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.58  E-value=8.6e-06  Score=90.35  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=93.0

Q ss_pred             ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653           96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus        96 ~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l  175 (594)
                      ....+.....+..++..|+.+|+|+.|+..|++|+++...... ..+.+...+..++|.+|+.+++|.+|+..|.+||.+
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i  270 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI  270 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3356777778888999999999999999999999998322111 011112334456999999999999999999999976


Q ss_pred             --------cccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          176 --------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       176 --------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                              +|..+..+.+++.+|...|+|++|..+|++|++|-
T Consensus       271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence                    67788899999999999999999999999999874

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.00016  Score=74.73  Aligned_cols=110  Identities=15%  Similarity=0.160  Sum_probs=99.5

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus        97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      .+..+.+..+.+++..+....+++.|+..+.+|++-+|.+         +.+-.-+|.++...|+|..|++.++.+++.|
T Consensus       174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---------vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn  244 (389)
T COG2956         174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC---------VRASIILGRVELAKGDYQKAVEALERVLEQN  244 (389)
T ss_pred             cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---------eehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence            3678899999999999999999999999999999999998         4467789999999999999999999999999


Q ss_pred             ccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          177 AKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       177 P~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      |++ +...-.+-.||..+|+.++.+..+.++.+..+....
T Consensus       245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence            987 457778899999999999999999999998876543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.54  E-value=6.9e-06  Score=84.30  Aligned_cols=95  Identities=12%  Similarity=0.046  Sum_probs=78.0

Q ss_pred             ecccCceee-eccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHH
Q 007653          148 CSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVL  220 (594)
Q Consensus       148 ~~~N~a~~~-~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~~a~~~l  220 (594)
                      .+++.+.++ ++.++|++|+..|+..|+..|++   +.++|++|.+|+..|+|++|+.+|++++...|++   ++++..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            456666665 56799999999999999999998   5899999999999999999999999999998886   4566667


Q ss_pred             hHHHHHhhhccCCCCCccchHH
Q 007653          221 RDAKEILMKEDGHHGPRGLLIE  242 (594)
Q Consensus       221 ~~a~~~l~~~~~a~~~~~~~ie  242 (594)
                      +.+...+++...+...+..++.
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777776666555555553

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.53  E-value=1.7e-05  Score=88.84  Aligned_cols=126  Identities=10%  Similarity=-0.058  Sum_probs=95.8

Q ss_pred             HHHHHHhccccccc---ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc--------cchhhhhhcce
Q 007653          103 AKMLKKQGNELYSE---GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK--------QYDECIKVGSE  171 (594)
Q Consensus       103 a~~l~~~Gn~~~~~---g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg--------~y~eAi~~~~~  171 (594)
                      +-.++..|..++..   +.+..|+.+|++|++++|++..         +|.-++.||....        +...+.+...+
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---------AQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            44566667666544   4488999999999999999943         5555566654432        34455666667


Q ss_pred             eeee--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653          172 VLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       172 AL~l--dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                      ++.+  +|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++++....++.+++...+.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~  477 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS  477 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6664  788889999999999999999999999999999999 47789999999888877665544433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=3e-05  Score=76.88  Aligned_cols=77  Identities=14%  Similarity=0.075  Sum_probs=69.7

Q ss_pred             CceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       152 ~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      -|.+|+.-++|..||.+|.+||.++|..+.+|-+|+.||+.+.+|+.+..++++|++++|+....+..++.+.-...
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            46677888999999999999999999999999999999999999999999999999999998888888877655443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.46  E-value=2.4e-05  Score=87.45  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=69.0

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +++.+|.+|...|+|++|++++++||+..|..++.|+.+|.+|.+.|++.+|.++++.|-.+|+.|.-+.....+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            5688899999999999999999999999999999999999999999999999999999999999886655544443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.46  E-value=3.1e-05  Score=53.38  Aligned_cols=34  Identities=38%  Similarity=0.628  Sum_probs=29.9

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      +++|+++|.+|..+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.45  E-value=5.9e-05  Score=78.62  Aligned_cols=120  Identities=13%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      |.+.+....+...+..-.....+.+.+..|  +|.+|.-.|++..+..+..+         ..++.++.|++.+|+|++|
T Consensus       150 A~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~---------~~lng~A~~~l~~~~~~eA  220 (290)
T PF04733_consen  150 AEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP---------KLLNGLAVCHLQLGHYEEA  220 (290)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH---------HHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH---------HHHHHHHHHHHHhCCHHHH
Confidence            334444444444444444444444443333  46666666666544433332         2345566666666666666


Q ss_pred             hhhcceeeeecccchHHHHHhccchhhhhhH-HHHhhhcccccccCCCCChH
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~-~eAi~~lekAl~l~P~~~~a  216 (594)
                      ...+.+++..+|+++.++.|+..+...+|+. +.+.+++.+....+|+++-+
T Consensus       221 e~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~  272 (290)
T PF04733_consen  221 EELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV  272 (290)
T ss_dssp             HHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence            6666666666666666666666666666665 44445555555566665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR00540 hemY_coli hemY protein

Probab=97.45  E-value=5.1e-05  Score=82.75  Aligned_cols=122  Identities=13%  Similarity=0.064  Sum_probs=98.7

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..+.+.+.+..+..+.....+.-.|..+..+|+++.|..+|.++.+..|...        ..+...++.+++..|+|+
T Consensus        99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~--------l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN--------ILVEIARTRILLAQNELH  170 (409)
T ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc--------hHHHHHHHHHHHHCCCHH
Confidence            344455555555555555566777888899999999999999999998777652        113344588888999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      .|+..+++.++..|+++.+++.++.+|...|+|++|++.+++.++....+
T Consensus       171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999998775443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.39  E-value=0.00012  Score=81.19  Aligned_cols=136  Identities=13%  Similarity=0.056  Sum_probs=113.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++.++..-+...++++++.-+.++..-.+.+....|++|..+|.++....+..          .+|+.-+.....++..+
T Consensus       599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----------Rv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----------RVWMKSANLERYLDNVE  668 (913)
T ss_pred             CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----------hhhHHHhHHHHHhhhHH
Confidence            34455666666677777777777777777777778888888888877655543          36777777888899999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +|++.|+++|+.-|++.+.|..+|+++-..++.+.|.+.|...++..|+...+|-.|..+.++.++
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999988877653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=3.6e-05  Score=81.26  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=84.2

Q ss_pred             chHHHHHHHhcccccccccc--------------------hhHHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653          100 FNAAKMLKKQGNELYSEGRF--------------------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  159 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y--------------------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl  159 (594)
                      .-...+++++||+|...|+.                    +.|+++|.+-|++.....+   ......||-|+|..|+.+
T Consensus       132 v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD---r~aqGRa~GnLGNTyYlL  208 (639)
T KOG1130|consen  132 VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD---RLAQGRAYGNLGNTYYLL  208 (639)
T ss_pred             HhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh---HHhhcchhcccCceeeee
Confidence            34567899999999888764                    5677778877776554432   222356999999999999


Q ss_pred             ccchhhhhhcceeeeeccc------chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          160 KQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      |+|+.||..-..-|.|.-.      --.+|.++|.||.-+|+++.|+++|++.+.+
T Consensus       209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            9999999987777766543      3468999999999999999999999987654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.31  E-value=7.5e-05  Score=55.00  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=36.8

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      +.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3578888999999999999999999999999999888887764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.29  E-value=4.6e-05  Score=78.95  Aligned_cols=114  Identities=19%  Similarity=0.192  Sum_probs=88.1

Q ss_pred             cchHHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653           99 EFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP  177 (594)
                      ....+..+.+.|..|... +++++|+.+|.+|+++......   ......|+.+++.++.++++|++|++.|++++...-
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            344678899999999999 9999999999999998654431   111244788999999999999999999999875321


Q ss_pred             ------cch-HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          178 ------KNV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       178 ------~~~-ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                            -++ ..++..+.|++..|++..|...|++...++|....
T Consensus       187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence                  123 35678889999999999999999999999997654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.29  E-value=9.4e-05  Score=80.45  Aligned_cols=103  Identities=13%  Similarity=0.058  Sum_probs=84.5

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .+...+....+.|+++.|..+|.++.+..|+...        ......+.++...|+|++|+..+++.++.+|+++.++.
T Consensus       120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~--------~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~  191 (398)
T PRK10747        120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQL--------PVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLR  191 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            3444455669999999999999999998777631        12224478899999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      .++.+|...|+|++|++.+.+..+..+.++.
T Consensus       192 ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~  222 (398)
T PRK10747        192 LAEQAYIRTGAWSSLLDILPSMAKAHVGDEE  222 (398)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999888877776665443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.28  E-value=0.00019  Score=82.76  Aligned_cols=113  Identities=13%  Similarity=0.080  Sum_probs=99.5

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      ....|..+|..+...+++..|+..|+-+++.+|.+.         .+|..+|.+|.+.|+|..|++.+++|..++|.+.-
T Consensus       561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~---------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y  631 (1238)
T KOG1127|consen  561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY---------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY  631 (1238)
T ss_pred             HHhhhhhccccccCccchhhHHHHHHHHhcCCchhH---------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence            446677799999999999999999999999999994         49999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +.|..+.....+|+|.+|+..+...+........++..++++
T Consensus       632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~  673 (1238)
T KOG1127|consen  632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES  673 (1238)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            999999999999999999999998877655544444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=6.5e-05  Score=77.10  Aligned_cols=108  Identities=11%  Similarity=-0.032  Sum_probs=95.8

Q ss_pred             ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh--
Q 007653          117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--  194 (594)
Q Consensus       117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg--  194 (594)
                      ...+.-+...+..|..+|++.+         -|.-+|.+|+.++++..|...|.+|++|.|+|+..+.-+|.+++...  
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~e---------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~  206 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAE---------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ  206 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCch---------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence            3456778889999999999955         79999999999999999999999999999999999999999997653  


Q ss_pred             -hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          195 -RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       195 -~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                       .-.++...|++++++||.|..+...|+...+..++++.+
T Consensus       207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A  246 (287)
T COG4235         207 QMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA  246 (287)
T ss_pred             cccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence             367899999999999999999999999998888777643

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.00015  Score=76.82  Aligned_cols=162  Identities=9%  Similarity=-0.031  Sum_probs=113.9

Q ss_pred             ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC----ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHH
Q 007653           48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA----SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL  123 (594)
Q Consensus        48 k~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~----~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi  123 (594)
                      -+.+-.+....+++....+|..+..|....--+    .-++++.+...+   +......+.-|..-|..++..++|..|+
T Consensus       244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L---f~~~~~ta~~wfV~~~~l~~~K~~~rAL  320 (564)
T KOG1174|consen  244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYL---FAKVKYTASHWFVHAQLLYDEKKFERAL  320 (564)
T ss_pred             hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHH---HhhhhcchhhhhhhhhhhhhhhhHHHHH
Confidence            355556666667777777777776665441111    222222222222   2222234556777778888888888888


Q ss_pred             HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (594)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l  203 (594)
                      .+-.++|+.+|+.         +.+|+-.|.+++.+++..+|+-.|+.|+.+.|.....|--+-.+|...|++.||.-..
T Consensus       321 ~~~eK~I~~~~r~---------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A  391 (564)
T KOG1174|consen  321 NFVEKCIDSEPRN---------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA  391 (564)
T ss_pred             HHHHHHhccCccc---------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence            8888888888877         4477888888888888888888888888888888888888888888888888888888


Q ss_pred             ccccccCCCCChHHHHHh
Q 007653          204 SNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       204 ekAl~l~P~~~~a~~~l~  221 (594)
                      ..++..-|.+......++
T Consensus       392 n~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  392 NWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHHhhcchhhhhhhc
Confidence            888888787777777775

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.24  E-value=0.00011  Score=79.36  Aligned_cols=105  Identities=12%  Similarity=0.125  Sum_probs=79.0

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      ....++..++..++..+|+..+.++|...|.+..         ++.-.+.++++.++|+.|+..+++++.+.|+..+.|+
T Consensus       202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~  272 (395)
T PF09295_consen  202 VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---------LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWY  272 (395)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHH
Confidence            3344566666667778888888888887777632         5566777788888888888888888888888888888


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                      .++.+|..+|+|++|+..+..+--..+.+.....
T Consensus       273 ~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~  306 (395)
T PF09295_consen  273 QLAECYIQLGDFENALLALNSCPMLTYKDKYKLK  306 (395)
T ss_pred             HHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhh
Confidence            8888888888888888888866555444443333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.24  E-value=0.0001  Score=50.43  Aligned_cols=34  Identities=38%  Similarity=0.650  Sum_probs=30.6

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      +++++.+|.+|..+|+|++|+.+|++++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4789999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.19  E-value=4.8e-05  Score=68.81  Aligned_cols=85  Identities=21%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeeccc---chHHHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLR  221 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~---~~~a~~~l~  221 (594)
                      +++++|.+|-.+|+.++|+..|+++|...+.   -..++..+|.+|..+|++++|+..+++++.-.|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            5688999999999999999999999987543   4679999999999999999999999999999898   667777777


Q ss_pred             HHHHHhhhccC
Q 007653          222 DAKEILMKEDG  232 (594)
Q Consensus       222 ~a~~~l~~~~~  232 (594)
                      .+...+++.++
T Consensus        83 l~L~~~gr~~e   93 (120)
T PF12688_consen   83 LALYNLGRPKE   93 (120)
T ss_pred             HHHHHCCCHHH
Confidence            77777665544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.18  E-value=4.1e-05  Score=80.89  Aligned_cols=106  Identities=15%  Similarity=0.191  Sum_probs=86.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  176 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------  176 (594)
                      -.++-++||.||-.|+|+.||.+-+.-|++...+.+.   ...-.+|.|+|.||.-+|+|+.|+++|.+++.+.      
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---AaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r  271 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---AAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR  271 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---HHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch
Confidence            3567889999999999999999988888877665431   1113489999999999999999999999876542      


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                      -..+...|.+|.+|.-+.+|+.||.|+.+-|.|.-
T Consensus       272 ~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  272 TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22466789999999999999999999999887754

>PRK11906 transcriptional regulator; Provisional

Probab=97.17  E-value=7.5e-05  Score=80.96  Aligned_cols=115  Identities=11%  Similarity=-0.059  Sum_probs=94.0

Q ss_pred             HHHhcccccccc---cchhHHHHHHHhh---hccccccccccceeeeeecccCceeeecc---------ccchhhhhhcc
Q 007653          106 LKKQGNELYSEG---RFSNALQKYLLAK---KNLQGIHSSEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGS  170 (594)
Q Consensus       106 l~~~Gn~~~~~g---~y~eAi~~Y~kAL---~l~p~~~~~e~~~l~~~~~~N~a~~~~kl---------g~y~eAi~~~~  170 (594)
                      ++..|...+.++   ....|+.+|.+++   .++|.+.         .+|.-++.||...         .+-.+|++..+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a---------~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~  328 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKT---------ECYCLLAECHMSLALHGKSELELAAQKALELLD  328 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccH---------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            355555543333   4467899999999   8888884         4788888888654         24567888999


Q ss_pred             eeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       171 ~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +|+++||.++.+++.+|.++...++++.|+..|++|+.++|+...++...+.+..--++
T Consensus       329 rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~  387 (458)
T PRK11906        329 YVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK  387 (458)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999888886555444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.09  E-value=7.3e-05  Score=70.76  Aligned_cols=92  Identities=11%  Similarity=-0.019  Sum_probs=82.8

Q ss_pred             ccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +..|.-++..|+|++|...|+-...+||.++++++.+|.|+..+++|++|+..|..|..++++++......+.|.-.+++
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence            44555678899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccCCCCCccchH
Q 007653          230 EDGHHGPRGLLI  241 (594)
Q Consensus       230 ~~~a~~~~~~~i  241 (594)
                      ...+......++
T Consensus       121 ~~~A~~~f~~a~  132 (165)
T PRK15331        121 AAKARQCFELVN  132 (165)
T ss_pred             HHHHHHHHHHHH
Confidence            777766665555

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.00057  Score=75.37  Aligned_cols=153  Identities=14%  Similarity=0.139  Sum_probs=95.8

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e  121 (594)
                      .-...++...+++.+.+.++...-|.+..+.+.++-++ ..+.++.+.+-...... ........+.++.++|+.++.++
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-~~~~~~~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-LLVINSFFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-hhhcchhhHHHHHHHHHcccHHH
Confidence            33344455556666666666666677777777774444 33444444421111110 01111122577778888888888


Q ss_pred             HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--------------------------
Q 007653          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------------------------  175 (594)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--------------------------  175 (594)
                      |+..|+ .++-.+..           +..-+|.++|++++|++|+..|+..++-                          
T Consensus        98 alk~~~-~~~~~~~~-----------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q  165 (652)
T KOG2376|consen   98 ALKTLK-GLDRLDDK-----------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQ  165 (652)
T ss_pred             HHHHHh-cccccchH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHH
Confidence            888887 22222211           3345678888888888888888776422                          


Q ss_pred             ----ccc-chHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          176 ----DAK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       176 ----dP~-~~ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                          .|. ....+||++.++...|+|.+|++.+++|+.
T Consensus       166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                222 567899999999999999999999999933

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00028  Score=73.13  Aligned_cols=80  Identities=20%  Similarity=0.160  Sum_probs=69.7

Q ss_pred             ccCceeeeccccchhhhhhcceeeeeccc----chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          150 LNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       150 ~N~a~~~~klg~y~eAi~~~~~AL~ldP~----~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      ---|.-|++.++|..|+..|+++|+..-.    ++..|.||+.|.+.+|+|..|+.|+.+|+.++|.+.+++.+-.+|..
T Consensus        85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~  164 (390)
T KOG0551|consen   85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL  164 (390)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence            33466689999999999999999987533    67789999999999999999999999999999999988887777777


Q ss_pred             Hhhh
Q 007653          226 ILMK  229 (594)
Q Consensus       226 ~l~~  229 (594)
                      .|..
T Consensus       165 eLe~  168 (390)
T KOG0551|consen  165 ELER  168 (390)
T ss_pred             HHHH
Confidence            7766

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.93  E-value=0.00056  Score=71.31  Aligned_cols=132  Identities=16%  Similarity=0.072  Sum_probs=96.9

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--c
Q 007653           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--T  159 (594)
Q Consensus        82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k--l  159 (594)
                      ..+++.+..-++..     ...+...-.-.++++.+|++.|.+.|+...+.+++.           ...+++.++..  .
T Consensus       115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------~l~qLa~awv~l~~  178 (290)
T PF04733_consen  115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-----------ILTQLAEAWVNLAT  178 (290)
T ss_dssp             CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-----------HHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHh
Confidence            33444455444432     334555556667889999999999999988876554           33455544433  3


Q ss_pred             --ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          160 --KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       160 --g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                        .+|.+|...|++.....+.++..+...+.|+..+|+|++|...+++|+..+|+++.+..++..+...+++
T Consensus       179 g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  179 GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence              3799999999998887788999999999999999999999999999999999999988888877666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.0007  Score=74.69  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg  160 (594)
                      ..++++.+.....+.+...++...+++..-.++.+.++|++|+..-++-..+.-.          ....+-.+.|+|+++
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~----------~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI----------NSFFFEKAYCEYRLN   93 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc----------chhhHHHHHHHHHcc
Confidence            3445666666666677777788888999999999999999998443332211111          112257899999999


Q ss_pred             cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      +.++|+.+++   .+++...+.+..+|..++++|+|++|++.|+..++.+-++.+
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            9999999999   557888889999999999999999999999999877665533

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.88  E-value=0.00023  Score=76.98  Aligned_cols=108  Identities=16%  Similarity=0.107  Sum_probs=98.2

Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh
Q 007653          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  193 (594)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l  193 (594)
                      ...++|+.|+..|++..+.+|..            .+-++.+|+..++..+|++.+.++|+.+|.+...+...+..|...
T Consensus       180 ~~t~~~~~ai~lle~L~~~~pev------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  180 SLTQRYDEAIELLEKLRERDPEV------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             hhcccHHHHHHHHHHHHhcCCcH------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            44678999999999998877654            345788888899999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      ++|+.|+..+++++.+.|.+.+.|..|.++.-.+++++.+
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            9999999999999999999999999999999999887754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.88  E-value=7e-05  Score=66.71  Aligned_cols=101  Identities=22%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccc---cceeeeeecccCceeeeccccchhhhhhcceeeee-------cc
Q 007653          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------DA  177 (594)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-------dP  177 (594)
                      ..|...+..|-|.+|...|.+|.+.....|..+   +......||..++.++..+|+|++++...+++|.+       +.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            345556778899999999999999887776533   34445678999999999999999999999998854       32


Q ss_pred             ----cchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          178 ----KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       178 ----~~~ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                          -++.+.|+|+.++-.+|+.++|+..|+.+.+
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                3677899999999999999999999887654

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.87  E-value=0.00065  Score=69.05  Aligned_cols=122  Identities=9%  Similarity=-0.044  Sum_probs=91.2

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc------------------cc
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK------------------QY  162 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg------------------~y  162 (594)
                      -...+.+.+|..+++.++|.+|+..|++.++..|+++..      ..+++.+|.|+..++                  .-
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~  140 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHA  140 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHH
Confidence            344567899999999999999999999999999998752      446777887764443                  13


Q ss_pred             hhhhhhcceeeeecccchH---H--------------HHHhccchhhhhhHHHHhhhcccccccCCCCChHH---HHHhH
Q 007653          163 DECIKVGSEVLAYDAKNVK---A--------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA---DVLRD  222 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~k---a--------------~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~---~~l~~  222 (594)
                      .+|+..+++.|+.-|+..-   +              -+..|.-|.+.|+|..|+.-++.++.--|+-+...   ..+.+
T Consensus       141 ~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~  220 (243)
T PRK10866        141 RAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMEN  220 (243)
T ss_pred             HHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence            5788999999999887522   2              23356668888999999999999999888765444   44444


Q ss_pred             HHHHhh
Q 007653          223 AKEILM  228 (594)
Q Consensus       223 a~~~l~  228 (594)
                      +...++
T Consensus       221 ay~~lg  226 (243)
T PRK10866        221 AYRQLQ  226 (243)
T ss_pred             HHHHcC
Confidence            444443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.83  E-value=0.00074  Score=52.05  Aligned_cols=49  Identities=18%  Similarity=0.231  Sum_probs=43.2

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +.+|.++.+++++|+|++|..+++.+|+++|+|..+......++.++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999888887754

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.83  E-value=0.00019  Score=68.67  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=64.8

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhccccccc----------ccchhHHHHHHHhhhccccccccccceeeeeecccCce
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSE----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS  154 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~  154 (594)
                      ++.+.+.+.+....++..++.+.+-|..+...          .-+++|+..|++||.++|..++         +++++|.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---------Alw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---------ALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHH
Confidence            44555666666667888888888888877544          3457899999999999999965         8899999


Q ss_pred             eeecccc-----------chhhhhhcceeeeecccchH
Q 007653          155 CYLKTKQ-----------YDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       155 ~~~klg~-----------y~eAi~~~~~AL~ldP~~~k  181 (594)
                      +|..++.           |++|..+|++|..++|+|..
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            9987753           88888999999999998864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.80  E-value=0.00088  Score=72.41  Aligned_cols=128  Identities=16%  Similarity=0.090  Sum_probs=100.3

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHh-hhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee--
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA--  174 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kA-L~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~--  174 (594)
                      ...+.+.++.-+.+.+|..|+|..|.+.+... |.-.+... ....-....+|+|+|-+|++++.|.-++.+|.+||.  
T Consensus       235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~-~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~  313 (696)
T KOG2471|consen  235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT-ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNS  313 (696)
T ss_pred             hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc-ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHH
Confidence            34466788889999999999999999987653 12112110 001112356789999999999999999999999985  


Q ss_pred             -------ec---------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          175 -------YD---------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       175 -------ld---------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                             +.         -.....+|+.|..|...|+.-.|.++|.++..+--.++.+|-++.+|.-.
T Consensus       314 c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  314 CSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                   11         23567899999999999999999999999999998999999999988544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.76  E-value=0.00013  Score=53.67  Aligned_cols=42  Identities=24%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a  189 (594)
                      +|+.+|.+|..+|++++|++.|+++|+++|+++.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            567899999999999999999999999999999999998864

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.64  E-value=0.00021  Score=72.63  Aligned_cols=95  Identities=16%  Similarity=0.092  Sum_probs=79.8

Q ss_pred             cccCceeeeccccchhhhhhcceeeeecccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhH
Q 007653          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRD  222 (594)
Q Consensus       149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~---~a~~~l~~  222 (594)
                      .||.|.-|++.|+|.+|...|..-|+.-|+.   +.++|++|.+++..|+|++|...|..+++-.|+++   +....|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5888888999999999999999999988875   77999999999999999999999999999988875   56677788


Q ss_pred             HHHHhhhccCCCCCccchHHH
Q 007653          223 AKEILMKEDGHHGPRGLLIEE  243 (594)
Q Consensus       223 a~~~l~~~~~a~~~~~~~iee  243 (594)
                      +...+++...++.-...++.+
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            888887776665555555533

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.63  E-value=0.00043  Score=66.55  Aligned_cols=116  Identities=13%  Similarity=0.113  Sum_probs=95.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhh-ccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--c
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N  179 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~  179 (594)
                      ....+.+|+.+...|+|.+|..+|.+++. +.-.+         ....+.++.+.+..+++..|...+++..+.+|.  .
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d---------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~  159 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD---------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS  159 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence            55788899999999999999999999986 33333         236788999999999999999999999999985  5


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      ++.+...|.+|..+|++++|...|+.++...|+- .+...+.+-.-+.+
T Consensus       160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg  207 (251)
T COG4700         160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG  207 (251)
T ss_pred             CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence            7888889999999999999999999999988763 34444444444444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.59  E-value=0.00072  Score=68.23  Aligned_cols=124  Identities=14%  Similarity=0.162  Sum_probs=100.8

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      -+..|++.|...++.|+|.+|+.+|++.....|..+.      .-.+.+.++.+|++.++|++|+...++-|.+.|.++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999999999999988777653      1346678899999999999999999999999998755


Q ss_pred             ---HHHHhccchhh--------hhhHHHHhhhcccccccCCCC---ChHHHHHhHHHHHhhhcc
Q 007653          182 ---ALYRRGQAYKD--------IGRLEEAVSDLSNAHEVSPDD---GTIADVLRDAKEILMKED  231 (594)
Q Consensus       182 ---a~~~rg~al~~--------lg~~~eAi~~lekAl~l~P~~---~~a~~~l~~a~~~l~~~~  231 (594)
                         ++|.+|.+++.        ...-.+|+..|+..+..-|+.   +.+...+..+..++..++
T Consensus       107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105         107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence               67778887653        344567999999999999986   466677777766665544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.57  E-value=0.001  Score=74.07  Aligned_cols=111  Identities=14%  Similarity=-0.023  Sum_probs=73.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...|..-.++....++.++|+.+++++|+..|.++.         +|.-+|++|-+.++.+.|.+.|...++..|..+-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K---------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL  721 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK---------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL  721 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH---------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence            344555555555666667777777777777776643         66677777777777777777777777777777777


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      |..++..--..|+...|...|+++.-.+|++..+|-..-.
T Consensus       722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir  761 (913)
T KOG0495|consen  722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR  761 (913)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence            7777766666667777777777777777776655544333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.56  E-value=0.0012  Score=65.05  Aligned_cols=125  Identities=16%  Similarity=0.070  Sum_probs=92.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-----------ccchhhhh
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----------KQYDECIK  167 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-----------g~y~eAi~  167 (594)
                      .+-..+++..+|..+++.|+|.+|+..|++.++..|..+..      ..+++.+|.|++.+           +...+|+.
T Consensus        38 s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~  111 (203)
T PF13525_consen   38 SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE  111 (203)
T ss_dssp             STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------hhHHHHHHHHHHHhCccchhcccChHHHHHHHH
Confidence            44556788999999999999999999999999999988641      34677788886554           44568999


Q ss_pred             hcceeeeecccchHH-----------------HHHhccchhhhhhHHHHhhhcccccccCCCCCh---HHHHHhHHHHHh
Q 007653          168 VGSEVLAYDAKNVKA-----------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKEIL  227 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka-----------------~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~---a~~~l~~a~~~l  227 (594)
                      .|+..|+.-|++.-+                 -+..|.-|.+.|.|..|+..|+.+++.-|+-..   +...+.++..++
T Consensus       112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l  191 (203)
T PF13525_consen  112 EFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL  191 (203)
T ss_dssp             HHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            999999998876322                 344688899999999999999999999998754   455555555555


Q ss_pred             hh
Q 007653          228 MK  229 (594)
Q Consensus       228 ~~  229 (594)
                      +.
T Consensus       192 ~~  193 (203)
T PF13525_consen  192 GL  193 (203)
T ss_dssp             T-
T ss_pred             CC
Confidence            43

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.55  E-value=0.0024  Score=67.65  Aligned_cols=183  Identities=17%  Similarity=0.107  Sum_probs=119.8

Q ss_pred             ChhHHHHhhhhh-ccCCCchhhhhhhhhc---CCChhHHHHHHHHhhcC------ChHHHHHHHHhhhhcccccchHHHH
Q 007653           36 NPELMRIATENM-KNMRPEDLKCAAEQLT---HTPPEEVAEIGEKLANA------SPEEIATMRARIDAQMNYEFNAAKM  105 (594)
Q Consensus        36 ~p~l~r~A~e~m-k~~~pe~~~~a~e~l~---~~~pee~~~~~~~~~~~------~~~el~aa~~~~~a~~~~~~~~a~~  105 (594)
                      +|+.+|.+.+.. +.....++......+.   ..+.+++....++++..      +....+.+.....++-......++.
T Consensus       186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l  265 (400)
T COG3071         186 HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPEL  265 (400)
T ss_pred             ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhH
Confidence            445555554442 3334444444444443   34556666555544432      1122222223333332333333555


Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~  185 (594)
                      ....+..+...|++++|.+...++++..-+..            +-+=.-.++.+++..-++..++.++.+|+++..++.
T Consensus       266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~------------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t  333 (400)
T COG3071         266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR------------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST  333 (400)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhccChh------------HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence            55666678899999999999999987543321            111112356789999999999999999999999999


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +|..|++.+.|.+|..+|+.|++..|+.. .+..++.+..++++-.
T Consensus       334 LG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~  378 (400)
T COG3071         334 LGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPE  378 (400)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence            99999999999999999999999988643 4577777777776543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.55  E-value=0.0012  Score=45.24  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=30.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  136 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~  136 (594)
                      ++.|..+|..++..|+|++|+.+|+++|+++|.+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4679999999999999999999999999999863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.0028  Score=65.00  Aligned_cols=65  Identities=26%  Similarity=0.270  Sum_probs=56.2

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA  174 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~  174 (594)
                      +.+..+.+.|..+|+.|+|++|++.|..|++..-..+.         +-+|++.||++.++|..|++...+.|+
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------lAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------LAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45678899999999999999999999999997665543         668999999999999999998776653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.0015  Score=65.93  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=92.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+.....+|....+-|+.+.|..+|+++-+......   .-.....+..|.+.+|+-.++|.+|...|++.+..||.
T Consensus       208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~---~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~  284 (366)
T KOG2796|consen  208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD---GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR  284 (366)
T ss_pred             CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh---ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence            366677788889999999999999888885432111110   01112446788999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      ++.+..+.+.|+..+|+..+|++.++.++.++|...
T Consensus       285 ~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  285 NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            999999999999999999999999999999999753

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.46  E-value=0.0017  Score=44.24  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=30.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  136 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~  136 (594)
                      ++.+..+|..++..|+|++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.41  E-value=0.0016  Score=74.26  Aligned_cols=125  Identities=26%  Similarity=0.427  Sum_probs=107.6

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--cccchhhhhhcceeeeec
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--TKQYDECIKVGSEVLAYD  176 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k--lg~y~eAi~~~~~AL~ld  176 (594)
                      ....+..++..||.+|..++|.+|...|..++.+.|.+..     ....++.|.+.||..  +++|..++..|+-++...
T Consensus        49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~  123 (748)
T KOG4151|consen   49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALESQ  123 (748)
T ss_pred             HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence            3445667899999999999999999999999999996532     235677888888876  469999999999999999


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      |...+++..|+.+|..+++++-|++++.-....+|.+..+-..+.+.+..+.
T Consensus       124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~  175 (748)
T KOG4151|consen  124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE  175 (748)
T ss_pred             chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999877776666666653

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.38  E-value=0.001  Score=72.04  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=95.7

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (594)
Q Consensus        82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~  161 (594)
                      ..+++.|..-|.+.++..++.+..+-+++..+++.++|..|+.-..+||+++|..         +.+|+.+|.++.++++
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---------~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---------IKAYVRRGTAVMALGE   87 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh---------hheeeeccHHHHhHHH
Confidence            3457778888899999999999999999999999999999999999999999988         5699999999999999


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhh--hHHHHh
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--RLEEAV  200 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg--~~~eAi  200 (594)
                      |.+|+.+|+....+.|+.+++.--...|-....  +|+.|+
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999998777777665443  344444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.31  E-value=0.00042  Score=71.85  Aligned_cols=111  Identities=18%  Similarity=0.239  Sum_probs=80.3

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-ccchhhhhhcceeeeec
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYD  176 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g~y~eAi~~~~~AL~ld  176 (594)
                      .....+..+.+.++.+ +..++.+|+.+|++|+++.-....   ...-..++.++|.+|... +++++|++.|.+|+++-
T Consensus        70 ~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~---~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y  145 (282)
T PF14938_consen   70 DKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR---FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELY  145 (282)
T ss_dssp             -HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT----HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            3444566666666555 445999999999999987543321   011144788999999998 99999999999999873


Q ss_pred             c------cchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          177 A------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       177 P------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      -      .....+...|.++..+|+|++|+..|++.....-+
T Consensus       146 ~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  146 EQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            2      23556778999999999999999999998775433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.27  E-value=0.00039  Score=64.30  Aligned_cols=98  Identities=19%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             hcccccccccchhHHHHHHHhhhcccccccc-------------ccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l  175 (594)
                      .|......++...++..|.+++.+.....-.             ........+...++.++...|+|++|+..|.+++.+
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            3434444555566666666666654332110             011222335566777788888999999999999999


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                      +|.+-.+|..+-.+|...|++.+|+..|+++
T Consensus        92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   92 DPYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            9999999999999999999999988888765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.25  E-value=0.0013  Score=68.80  Aligned_cols=104  Identities=16%  Similarity=0.124  Sum_probs=82.4

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~  192 (594)
                      +....+|..|+..++-.+.++....        ..+-.++|.||+++|+|++|+..|+.+..-+..+.+.+.+++.|+..
T Consensus        32 fls~rDytGAislLefk~~~~~EEE--------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy  103 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEE--------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY  103 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhh--------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH
Confidence            5667899999999888776554432        23567899999999999999999999998888889999999999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      +|.|.+|....++|    |+.+--...+-.+.-++.
T Consensus       104 Lg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen  104 LGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            99999999888776    555554444444444443

>PRK10941 hypothetical protein; Provisional

Probab=96.23  E-value=0.001  Score=68.48  Aligned_cols=81  Identities=19%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             ceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       142 ~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                      ..+......|+-.+|.+.++|+.|+.+++..+.++|+++.-+.-||.+|.++|++..|+.||+..++..|+++.+.....
T Consensus       177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            33445567899999999999999999999999999999999999999999999999999999999999999987654433


Q ss_pred             H
Q 007653          222 D  222 (594)
Q Consensus       222 ~  222 (594)
                      .
T Consensus       257 q  257 (269)
T PRK10941        257 Q  257 (269)
T ss_pred             H
Confidence            3

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.23  E-value=0.0011  Score=45.39  Aligned_cols=34  Identities=35%  Similarity=0.677  Sum_probs=29.5

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      +++|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3678999999999999999999999999998853

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.20  E-value=0.00058  Score=62.13  Aligned_cols=61  Identities=25%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             ceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       153 a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      |.++...|+.+.|++.|.++|.+-|.++.+|.||+.+|.-.|+.++|++++++|+++.-+.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            3445668999999999999999999999999999999999999999999999999997654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.14  E-value=0.00054  Score=47.75  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=30.9

Q ss_pred             HHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653          125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (594)
Q Consensus       125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~  167 (594)
                      +|+++|+++|+++.         +|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~---------a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAE---------AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHH---------HHHHHHHHHHHCcCHHhhcC
Confidence            48999999999965         99999999999999999974

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.09  E-value=0.0088  Score=59.04  Aligned_cols=87  Identities=11%  Similarity=0.023  Sum_probs=78.2

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      -+...+.+.+..+++.+..+.-+|..+...|+|+.|.+.|.-.++++|..         -+++.|||..++-.|+|.-|.
T Consensus        83 LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------~Ya~lNRgi~~YY~gR~~LAq  153 (297)
T COG4785          83 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------NYAHLNRGIALYYGGRYKLAQ  153 (297)
T ss_pred             HHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---------hHHHhccceeeeecCchHhhH
Confidence            44566777888899999999999999999999999999999999999998         458999999999999999999


Q ss_pred             hhcceeeeecccchHH
Q 007653          167 KVGSEVLAYDAKNVKA  182 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka  182 (594)
                      +++.+--.-||+++--
T Consensus       154 ~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         154 DDLLAFYQDDPNDPFR  169 (297)
T ss_pred             HHHHHHHhcCCCChHH
Confidence            9999888888887743

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.00  E-value=0.0019  Score=71.07  Aligned_cols=112  Identities=13%  Similarity=0.073  Sum_probs=99.1

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~  185 (594)
                      +...|..+...|+...|+.++..|+.+.|....        .-.+|++.+.++-+-...|-..+.++|.++-..+-.+|.
T Consensus       610 ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~  681 (886)
T KOG4507|consen  610 LNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS  681 (886)
T ss_pred             eecccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence            444566667889999999999999998887643        346899999999999999999999999999889999999


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       186 rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      +|.+|+.+.+.+.|++.|+.|+.++|++.++..-|..+..
T Consensus       682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  682 LGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             cchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999888877755

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.92  E-value=0.0052  Score=56.72  Aligned_cols=122  Identities=23%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCce-eeeccccchhhhhhcceeeeec
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~-~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      ........+...+..+...++|..++..+.+++...+....         .+..... +|...+++..|+..+.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  160 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---------AEALLALGALYELGDYEEALELYEKALELD  160 (291)
T ss_pred             hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34555667777888888888888888888888876655421         2233333 7888888888888888888777


Q ss_pred             c---cchHHHHHhccchhhhhhHHHHhhhcccccccCCC-CChHHHHHhHHHHHhh
Q 007653          177 A---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGTIADVLRDAKEILM  228 (594)
Q Consensus       177 P---~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~-~~~a~~~l~~a~~~l~  228 (594)
                      |   .....++.++..+...+++++|+..+.+++...+. ...+...+..+....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            6   46677777777778888888888888888888887 4666666666555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.0024  Score=65.40  Aligned_cols=116  Identities=10%  Similarity=0.053  Sum_probs=92.4

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~  192 (594)
                      +.+..+|.+||++..--.+..|..         .....-+|.||+..++|..|..+|++...+.|...++.+..+..++.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er~p~~---------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELERSPRS---------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCccc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            467889999999988888877765         23567899999999999999999999999999999999999999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       193 lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      .+.+.+|+..+....    +++.++...-.++..++-.++.....+..+
T Consensus        91 A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv  135 (459)
T KOG4340|consen   91 ACIYADALRVAFLLL----DNPALHSRVLQLQAAIKYSEGDLPGSRSLV  135 (459)
T ss_pred             hcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence            999999998776543    446666666666777765554444433333

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.75  E-value=0.0018  Score=68.91  Aligned_cols=103  Identities=14%  Similarity=0.233  Sum_probs=78.1

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccccc--------cc-ccceeeeeecccCceeeeccccchhhhhhcceeee
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH--------SS-EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA  174 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~--------~~-e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~  174 (594)
                      +.....+..+|++++|..|+..|..+|+++..-.        .. +...+...+...+..||+++++.+-|+...-+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            3444556667888888888888888888764321        10 01111122345688999999999999999999999


Q ss_pred             ecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653          175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       175 ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                      ++|.++.-|.+.+.|+..+.+|.+|.+.+-.|
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998766544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.74  E-value=0.0032  Score=70.61  Aligned_cols=128  Identities=13%  Similarity=-0.058  Sum_probs=101.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...++-++..+-..|+|++|+.+..+||++.|..++         +|+..|.+|-+.|++.+|.+..+.|..+|+.+--.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence            466788888899999999999999999999999865         89999999999999999999999999999988888


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccC--CCC-----ChHHHH--HhHHHHHhhhccCCCCCccc
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDD-----GTIADV--LRDAKEILMKEDGHHGPRGL  239 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~--P~~-----~~a~~~--l~~a~~~l~~~~~a~~~~~~  239 (594)
                      ....+..+++.|++++|.+.+..-.+-+  |..     .-+|..  .+.+..+.+.+..+...+..
T Consensus       265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~  330 (517)
T PF12569_consen  265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA  330 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8888888899999999999887765544  211     123333  34445555555444444433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.69  E-value=0.0054  Score=56.92  Aligned_cols=79  Identities=8%  Similarity=0.030  Sum_probs=65.1

Q ss_pred             ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc--------------
Q 007653           96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ--------------  161 (594)
Q Consensus        96 ~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~--------------  161 (594)
                      ..+.+-..++.+.++..+++.++|.+|+..|++-|++.|..+.      ...+++-+|.+++++..              
T Consensus        40 yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~  113 (142)
T PF13512_consen   40 YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------VDYAYYMRGLSYYEQDEGSLQSFFRSDRDPT  113 (142)
T ss_pred             CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------ccHHHHHHHHHHHHHhhhHHhhhcccccCcH
Confidence            3344555678899999999999999999999999999999875      25688899999988877              


Q ss_pred             -chhhhhhcceeeeecccch
Q 007653          162 -YDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       162 -y~eAi~~~~~AL~ldP~~~  180 (594)
                       ...|..++.+.|..-|++.
T Consensus       114 ~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  114 PARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHHHHHCcCCh
Confidence             7777888888777777664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.58  E-value=0.0056  Score=64.12  Aligned_cols=114  Identities=11%  Similarity=0.036  Sum_probs=84.4

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc------
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------  179 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~------  179 (594)
                      -.-.|.++|+.|+|++|+..|+-+.+-+...         ..+++|++-|++-+|.|.+|.....++-+- |-.      
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~---------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~RLlfh  129 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAP---------AELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCIRLLFH  129 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCC---------cccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHH
Confidence            3346778999999999999999887744443         448999999999999999999877766421 111      


Q ss_pred             ---------------------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          180 ---------------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       180 ---------------------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                                           .+-...++.+++..-+|.+||+.|.+.+.-+|++-.+.-.+..|..++.-
T Consensus       130 lahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  130 LAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence                                 11222355566666789999999999999888887776677777665543

>smart00028 TPR Tetratricopeptide repeats

Probab=95.46  E-value=0.0071  Score=38.84  Aligned_cols=33  Identities=36%  Similarity=0.665  Sum_probs=28.9

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      .+|+++|.+|...+++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999888753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.36  E-value=0.0025  Score=70.94  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=93.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      .+..+..-+.......|+.+-.+...|..+...|+.++|++.|++++......     .++...|+..++.||.-+.+|+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHH
Confidence            34455555666666788899999999999999999999999999998543333     3455678999999999999999


Q ss_pred             hhhhhcceeeeecc-cchHHHHHhccchhhhhhH-------HHHhhhcccc
Q 007653          164 ECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRL-------EEAVSDLSNA  206 (594)
Q Consensus       164 eAi~~~~~AL~ldP-~~~ka~~~rg~al~~lg~~-------~eAi~~lekA  206 (594)
                      +|..++.+.++.+. ..+-++|-.|.||..+++.       ++|.+.++++
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            99999999987644 3456777789999999988       5555555544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.28  E-value=0.0082  Score=55.36  Aligned_cols=105  Identities=24%  Similarity=0.297  Sum_probs=85.5

Q ss_pred             cccccccchhHHHHHHHhhhcccc-ccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc-chHHHHHhccc
Q 007653          112 ELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-NVKALYRRGQA  189 (594)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-~~ka~~~rg~a  189 (594)
                      .++..+++..|+..|.+++...+. ..       ....+..++..+...+++.+++..+.+++...+. ....++.++.+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE-------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL  211 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence            789999999999999999886652 11       1234555565577889999999999999999999 79999999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       190 l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +...+++++|+..+..++...|........+..+
T Consensus       212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             HHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence            9999999999999999999999844444444333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.061  Score=56.26  Aligned_cols=112  Identities=9%  Similarity=-0.010  Sum_probs=76.0

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-cccchHH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVKA  182 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-dP~~~ka  182 (594)
                      +.....+.+++.+|++.+|...+.+.|+-.|.+-         .++...-.+|+-.|+...-...+++.|-. +++-+-+
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl---------la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~  174 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL---------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY  174 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh---------hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH
Confidence            5566677788999999999999999999888873         23333344455566666666666676654 5555444


Q ss_pred             HHH---hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          183 LYR---RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       183 ~~~---rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      .|.   .+.++.+.|-|++|.+..+++++++|.+.=+...+..+.
T Consensus       175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence            443   455667778888888888888888887754444444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.74  E-value=0.012  Score=39.67  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=29.4

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      .++|++|.+|..+|++++|+..|++.+...|+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999888863

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.71  E-value=0.015  Score=67.98  Aligned_cols=89  Identities=12%  Similarity=0.016  Sum_probs=57.1

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~  185 (594)
                      |..+...+.+.|++++|.+.|++.- ..|.          ...|..+..++...|+++.|...+++.++++|++...|..
T Consensus       465 y~~li~~l~r~G~~~eA~~~~~~~~-~~p~----------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~  533 (697)
T PLN03081        465 YACMIELLGREGLLDEAYAMIRRAP-FKPT----------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV  533 (697)
T ss_pred             hHhHHHHHHhcCCHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence            4444455666666666666665431 1111          2345666666666777777777777777777777777777


Q ss_pred             hccchhhhhhHHHHhhhccc
Q 007653          186 RGQAYKDIGRLEEAVSDLSN  205 (594)
Q Consensus       186 rg~al~~lg~~~eAi~~lek  205 (594)
                      +..+|...|++++|.+.++.
T Consensus       534 L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        534 LLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHH
Confidence            77777777777777776653

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.61  E-value=0.022  Score=56.89  Aligned_cols=173  Identities=18%  Similarity=0.187  Sum_probs=111.9

Q ss_pred             HHHhhhhhccCCCchhh----hhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccc
Q 007653           40 MRIATENMKNMRPEDLK----CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS  115 (594)
Q Consensus        40 ~r~A~e~mk~~~pe~~~----~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~  115 (594)
                      .+.|-=.++..+..|..    .+....+...|++...-           +..+.+-|...+++.. .+..+..+|..|-.
T Consensus        58 lkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~c-----------L~~aieIyt~~Grf~~-aAk~~~~iaEiyEs  125 (288)
T KOG1586|consen   58 LKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNC-----------LEKAIEIYTDMGRFTM-AAKHHIEIAEIYES  125 (288)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHH-----------HHHHHHHHHhhhHHHH-HHhhhhhHHHHHhh
Confidence            33333345555554443    35666666777765552           3334444444444433 25567777777766


Q ss_pred             c-ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc------h-HHHHHhc
Q 007653          116 E-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------V-KALYRRG  187 (594)
Q Consensus       116 ~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~------~-ka~~~rg  187 (594)
                      . .+++.||.+|+++-+.......   ...--.|++..+..--.+++|.+||..|+++..-.-+|      + ..++.-|
T Consensus       126 dl~d~ekaI~~YE~Aae~yk~ees---~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg  202 (288)
T KOG1586|consen  126 DLQDFEKAIAHYEQAAEYYKGEES---VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG  202 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHcchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence            5 8999999999999987665532   11222356666666677899999999998887554433      2 3566678


Q ss_pred             cchhhhhhHHHHhhhcccccccCCCCChH--HHHHhHHHHHh
Q 007653          188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEIL  227 (594)
Q Consensus       188 ~al~~lg~~~eAi~~lekAl~l~P~~~~a--~~~l~~a~~~l  227 (594)
                      .||+...+.-.+...+++...++|.....  ...|..+...+
T Consensus       203 LChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai  244 (288)
T KOG1586|consen  203 LCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI  244 (288)
T ss_pred             HHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence            89988888888999999999999987543  34445544444

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.59  E-value=0.0087  Score=54.80  Aligned_cols=83  Identities=12%  Similarity=0.213  Sum_probs=67.4

Q ss_pred             ecccCceeeeccc---cchhhhhhcceeee-ecc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          148 CSLNSMSCYLKTK---QYDECIKVGSEVLA-YDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       148 ~~~N~a~~~~klg---~y~eAi~~~~~AL~-ldP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      +.+|++.|+.+..   +..+-|..++..++ -+| ..-.++|.++..|+++|+|+.++.+++..++.+|+|..+...-..
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4567777776654   55667777777775 444 357799999999999999999999999999999999999998888


Q ss_pred             HHHHhhhc
Q 007653          223 AKEILMKE  230 (594)
Q Consensus       223 a~~~l~~~  230 (594)
                      ++.++.+.
T Consensus       114 ied~itke  121 (149)
T KOG3364|consen  114 IEDKITKE  121 (149)
T ss_pred             HHHHHhhc
Confidence            88888653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.39  E-value=0.0061  Score=42.80  Aligned_cols=29  Identities=28%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                      +|.++|.+|..+|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46788888888888888888888866543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.28  E-value=0.044  Score=60.08  Aligned_cols=133  Identities=14%  Similarity=0.052  Sum_probs=91.7

Q ss_pred             HHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------------
Q 007653           72 EIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------------  138 (594)
Q Consensus        72 ~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------------  138 (594)
                      ....++|.....+  +-.+.++++++.+++.+.+|.-++.....  -..+|.++|+++++..+..-.             
T Consensus       173 ~IMq~AWRERnp~--aRIkaA~eALei~pdCAdAYILLAEEeA~--Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e  248 (539)
T PF04184_consen  173 EIMQKAWRERNPQ--ARIKAAKEALEINPDCADAYILLAEEEAS--TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWE  248 (539)
T ss_pred             HHHHHHHhcCCHH--HHHHHHHHHHHhhhhhhHHHhhccccccc--CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhh
Confidence            3344455443332  23344566677788888888777654322  235677777777664332110             


Q ss_pred             ---cccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          139 ---SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       139 ---~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                         .........+...+|.|..++|+.+|||+.+...++..|.  +...++++-.+|..+++|.++...+.+--.
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence               0122334556678899999999999999999999988774  677999999999999999999999887543

The molecular function of this protein is uncertain.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=0.011  Score=59.31  Aligned_cols=81  Identities=12%  Similarity=-0.001  Sum_probs=67.5

Q ss_pred             ecccCceeeeccccchhhhhhcceeeee--------cc----------cchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAY--------DA----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~l--------dP----------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      +....|.-++++|+|.+|+..|..||..        .|          .....+.|...|++..|+|-++++.+...|..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            4456777889999999999999999743        22          23447889999999999999999999999999


Q ss_pred             CCCCChHHHHHhHHHHHhh
Q 007653          210 SPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       210 ~P~~~~a~~~l~~a~~~l~  228 (594)
                      +|.|.+++...+++....=
T Consensus       260 ~~~nvKA~frRakAhaa~W  278 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVW  278 (329)
T ss_pred             CCchHHHHHHHHHHHHhhc
Confidence            9999999988888755543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=93.99  E-value=0.049  Score=58.04  Aligned_cols=127  Identities=13%  Similarity=0.100  Sum_probs=92.1

Q ss_pred             HhcChhH-HHHhhhhhccCCCchhhhhhhhh-cC-CChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHh
Q 007653           33 MMANPEL-MRIATENMKNMRPEDLKCAAEQL-TH-TPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQ  109 (594)
Q Consensus        33 m~~~p~l-~r~A~e~mk~~~pe~~~~a~e~l-~~-~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~  109 (594)
                      +-.+|++ +..|.+.+.-...++.....++. .+ .+++ +.   ..+....+.+.....+.++..+...++.+..+..+
T Consensus       259 lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~---~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tL  334 (400)
T COG3071         259 LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC---RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTL  334 (400)
T ss_pred             hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH---HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHH
Confidence            3446884 44455555555556665544443 22 2333 33   33444455555556677777777888889999999


Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (594)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL  173 (594)
                      |..+++.+.|.+|-.+|+.+|..-|...          .|.-+|.+|.++|+..+|-+.+++++
T Consensus       335 G~L~~k~~~w~kA~~~leaAl~~~~s~~----------~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         335 GRLALKNKLWGKASEALEAALKLRPSAS----------DYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            9999999999999999999999887764          57889999999999999998888876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.90  E-value=0.029  Score=39.33  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccc
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQ  134 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p  134 (594)
                      +|.++|+.+.+.|+|++|+.+|+++|.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478899999999999999999999776543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.88  E-value=0.052  Score=52.89  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=80.9

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-h
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-V  180 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-~  180 (594)
                      ..-....++..++..+++++|+..++.++..-.+.      .+...+-.+++.+.+.+|+|++|+..++..-  ++.+ +
T Consensus        88 a~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~  159 (207)
T COG2976          88 AVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE------NLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAA  159 (207)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHH
Confidence            34566777888999999999999999998643222      2334466889999999999999999887754  2222 2


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      ..-..||.+|...|+-++|+..|++++..+++
T Consensus       160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         160 IVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence            34667999999999999999999999998743

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.85  E-value=0.023  Score=56.52  Aligned_cols=61  Identities=13%  Similarity=0.268  Sum_probs=56.4

Q ss_pred             eeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       155 ~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      ...+-++++.|.+.|.+++++-|.+...|+++|......|+++.|.+.|++.++++|++--
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            3456789999999999999999999999999999999999999999999999999998643

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.84  E-value=0.033  Score=37.91  Aligned_cols=33  Identities=18%  Similarity=0.138  Sum_probs=29.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (594)
                      ++.+..+|.++...|++++|+.+|+++++++|+
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            357899999999999999999999999999873

...

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.73  E-value=0.011  Score=62.25  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=85.8

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc-----
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-----  178 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-----  178 (594)
                      ..+.-+|+.+...+.|+++++.|++|+++.....+   .-+...+|+.++..|-++++|++|+-+..+|.++--.     
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d  199 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD---AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD  199 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC---ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence            45666889999999999999999999987665533   2344668899999999999999999999998876322     


Q ss_pred             -----chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          179 -----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       179 -----~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                           ..-++|+.+.+|..+|++-+|.++++.|.++.
T Consensus       200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence                 23468889999999999999999999987764

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.66  E-value=0.042  Score=56.79  Aligned_cols=115  Identities=11%  Similarity=0.083  Sum_probs=81.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +....+.+....+.|+.++|...|..|+.+.|.+++         ++...|.....-++.-+|-.+|.+||.++|.|.++
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------ILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence            344445556678889999999999999999999976         56677777777788888999999999999999999


Q ss_pred             HHHhccchhhhhh----HHHHhhhcccccccCCC-CChHHHHHhHHHHH
Q 007653          183 LYRRGQAYKDIGR----LEEAVSDLSNAHEVSPD-DGTIADVLRDAKEI  226 (594)
Q Consensus       183 ~~~rg~al~~lg~----~~eAi~~lekAl~l~P~-~~~a~~~l~~a~~~  226 (594)
                      +.+|+...--...    +-+.+......+..-++ |..++...++..+.
T Consensus       187 LvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~  235 (472)
T KOG3824|consen  187 LVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL  235 (472)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            9999877643332    33344444444443343 34455555555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.62  E-value=0.057  Score=57.52  Aligned_cols=181  Identities=13%  Similarity=0.062  Sum_probs=115.0

Q ss_pred             hcChh-HHHH--hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHh
Q 007653           34 MANPE-LMRI--ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQ  109 (594)
Q Consensus        34 ~~~p~-l~r~--A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~  109 (594)
                      -+|.+ |++.  |.-.+-..+.++.++.++.+..-+.-.+..+... +....-...+++...........+....+....
T Consensus       115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~At  194 (531)
T COG3898         115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARAT  194 (531)
T ss_pred             hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHH
Confidence            34544 7776  4444667888899999998877644333333222 112222223344443333344455555566665


Q ss_pred             cccccccccchhHHHHHHHhhhc---cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653          110 GNELYSEGRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR  186 (594)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l---~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r  186 (594)
                      =...+..|+|+.|+++.......   .+...    ......++.-.+...+ --+...|..+..++++|.|+.+-+-..-
T Consensus       195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~a----eR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A  269 (531)
T COG3898         195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVA----ERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA  269 (531)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhhchhhH----HHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence            56678999999999998766542   12211    1111112222222222 2357889999999999999999999999


Q ss_pred             ccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007653          187 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (594)
Q Consensus       187 g~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l  220 (594)
                      +.+|++.|+..++-..++.+-+.+|+ +.+...+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY  302 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH-PDIALLY  302 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHH
Confidence            99999999999999999999999885 4444433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.01  E-value=0.11  Score=53.79  Aligned_cols=56  Identities=25%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhh
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILM  228 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~~~l~  228 (594)
                      +..||++..+-+-++..|...|++++|++.|-..++.+-.  +..+++.+-.+.+.++
T Consensus       229 ~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         229 LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            4458999999999999999999999999988887777653  4566666666666654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=92.96  E-value=0.14  Score=59.87  Aligned_cols=116  Identities=9%  Similarity=-0.073  Sum_probs=85.9

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .+..+-..+.+.|++++|..+|.+..+.....|.       ...|..+..+|.+.|++++|.+.+++.- ..| +...|.
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~  498 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWA  498 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHH
Confidence            3555556677888888888888877653333332       3467778888999999999999887652 334 455688


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      .+..++...|+++.|...+++.++++|++...+..+..+..+.++
T Consensus       499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence            888888899999999999999999999887777777666555544

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=92.93  E-value=0.051  Score=56.18  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=63.3

Q ss_pred             cCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      +.+.-.++.|+.++|...+..|++++|+++.++...|...-.-.+.-+|-.+|-+||.++|.|.++.-+...
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            334445678999999999999999999999999999999998899999999999999999999887665544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.70  E-value=0.038  Score=63.97  Aligned_cols=143  Identities=14%  Similarity=0.062  Sum_probs=104.7

Q ss_pred             cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec
Q 007653           79 NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (594)
Q Consensus        79 ~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k  158 (594)
                      ..+..++..+.+...+-++..++..-+..-.|..+++.|++++|..++ +++...+...        ....--+-.||..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D--------~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTD--------DLTLQFLQNVYRD   89 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCc--------hHHHHHHHHHHHH
Confidence            345567777888888888888998888888899999999999999554 4444433332        1244567889999


Q ss_pred             cccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhcc
Q 007653          159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKED  231 (594)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~-~a~~~l~~a~~~l~~~~  231 (594)
                      ++++++|+..|++++..+|. .+.++.+=.||.+.+.|.+=-+.--+..+..|+++ -.|..+..+...+...+
T Consensus        90 ~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~  162 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN  162 (932)
T ss_pred             HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence            99999999999999999999 88999999999999988763333222333557664 35566665555554443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.58  E-value=0.056  Score=62.65  Aligned_cols=98  Identities=20%  Similarity=0.232  Sum_probs=82.0

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~  192 (594)
                      ....++|+.|+....+.++..|+.+         ++..-.|..+.++|++++|..+++..-.+-+++-..+-.+-.||.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~---------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNAL---------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD   89 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence            5677899999999999999888874         3555678889999999999977766666677788888899999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHH
Q 007653          193 IGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (594)
Q Consensus       193 lg~~~eAi~~lekAl~l~P~~~~a~~~l  220 (594)
                      ++++++|+..|++++..+|. .+....+
T Consensus        90 ~~~~d~~~~~Ye~~~~~~P~-eell~~l  116 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKYPS-EELLYHL  116 (932)
T ss_pred             HhhhhHHHHHHHHHHhhCCc-HHHHHHH
Confidence            99999999999999999998 4443333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.55  E-value=0.19  Score=51.19  Aligned_cols=92  Identities=16%  Similarity=0.143  Sum_probs=71.5

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (594)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~  195 (594)
                      .+++.+|.-+|++.-+..+..+         ...+-.+.|++.+++|++|...++.+|..+++++..+.|+-.+-..+|.
T Consensus       186 gek~qdAfyifeE~s~k~~~T~---------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTP---------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCCh---------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            4458899999998877333332         3567789999999999999999999999999999999999999999998


Q ss_pred             HHHHhhhc-ccccccCCCCChH
Q 007653          196 LEEAVSDL-SNAHEVSPDDGTI  216 (594)
Q Consensus       196 ~~eAi~~l-ekAl~l~P~~~~a  216 (594)
                      -.++...+ .+....+|+++-+
T Consensus       257 d~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  257 DAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             ChHHHHHHHHHHHhcCCcchHH
Confidence            87766544 4445556766543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.18  E-value=0.033  Score=60.68  Aligned_cols=90  Identities=13%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhcc-c----cccc----cccceeeeeecccCceeeeccccchhhhhhcceee
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNL-Q----GIHS----SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~-p----~~~~----~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL  173 (594)
                      .-.+.++|.++|+.+.|.-++.+|.+||+.. .    ....    .-...-...+.||+|..|+..|+...|.++|.++.
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av  362 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV  362 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence            3457899999999999999999999999621 1    1000    00111223467999999999999999999999999


Q ss_pred             eecccchHHHHHhccchhh
Q 007653          174 AYDAKNVKALYRRGQAYKD  192 (594)
Q Consensus       174 ~ldP~~~ka~~~rg~al~~  192 (594)
                      ..-..++..|.|++.|...
T Consensus       363 ~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  363 HVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHhcCcHHHHHHHHHHHH
Confidence            9999999999999999864

>PLN03077 Protein ECB2; Provisional

Probab=91.99  E-value=0.074  Score=63.62  Aligned_cols=91  Identities=12%  Similarity=0.023  Sum_probs=70.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...|..+...+.+.|++++|.+.+++. .+.|+.          .+|..+-.++...++.+.+....+++++++|++...
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~----------~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~  693 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP----------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY  693 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH----------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence            456777778888899999999888874 233332          245555455566788888888888889999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcc
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLS  204 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~le  204 (594)
                      |..++.+|...|+|++|.+..+
T Consensus       694 y~ll~n~ya~~g~~~~a~~vr~  715 (857)
T PLN03077        694 YILLCNLYADAGKWDEVARVRK  715 (857)
T ss_pred             HHHHHHHHHHCCChHHHHHHHH
Confidence            9999999999999999988765

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.95  E-value=0.098  Score=44.87  Aligned_cols=65  Identities=25%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhh
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMK  229 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~  229 (594)
                      .+..++++++.+|++..+.|.++.+|...|+|++|++.|-..+..++++  ..++..+-.+-..++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3556778888999999999999999999999999999999999999876  6677777777777654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=91.87  E-value=0.042  Score=57.01  Aligned_cols=113  Identities=9%  Similarity=-0.042  Sum_probs=79.2

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcceeeeecccchHHHH
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      |....+...+.+..+.|-..|.+|++..+..         ..+|...|...++ .++.+.|...|+.+++.-|.+...|.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~   74 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCT---------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            3444455556666888888899998644433         2367777777555 56666699999999999999999888


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHh
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEIL  227 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~---~a~~~l~~a~~~l  227 (594)
                      ....-+..+++.+.|...|++++..-|...   .+|..+-.-+...
T Consensus        75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~  120 (280)
T PF05843_consen   75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKY  120 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc
Confidence            888888899999999999999998877654   3555444444433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.64  E-value=0.016  Score=44.75  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=32.4

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR  186 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r  186 (594)
                      |++.+|..|+++|+|.+|..+++.+|+++|+|..+...+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            567788999999999999999999999999998875443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.63  E-value=0.1  Score=34.90  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=29.0

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (594)
                      ++++.+|.++++.|++++|+..|++++...|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            36888999999999999999999999998775

>PRK04841 transcriptional regulator MalT; Provisional

Probab=91.58  E-value=0.024  Score=67.82  Aligned_cols=105  Identities=14%  Similarity=0.058  Sum_probs=78.7

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc-----
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-----  178 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-----  178 (594)
                      ..+..+|..++..|+|++|+..|.+++........   ......++.+++.+++..|++++|...+.+++.+-..     
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~  568 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ  568 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            45667788888899999999999999876543321   0011235678899999999999999999998875221     


Q ss_pred             ---chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          179 ---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       179 ---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                         ....+..+|.++...|++++|...+++++.+..
T Consensus       569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence               233466788899999999999999999887643

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.52  E-value=0.054  Score=60.67  Aligned_cols=102  Identities=19%  Similarity=0.239  Sum_probs=80.7

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~  183 (594)
                      ..+.+.+..+|+..+|..+++.|...+...|.+-.   ....+....+++.||+++.+.+.|++.+.+|-+.||.++-..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~---~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY---SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh---hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            46778888999999999999999999998887632   122245667888899999999999999999988888888777


Q ss_pred             HHhccchhhhhhHHHHhhhcccccc
Q 007653          184 YRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       184 ~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                      +..-.+...-+.-++|+..+.+...
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~s  456 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIKS  456 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHh
Confidence            7777777777777887777665544

>smart00028 TPR Tetratricopeptide repeats

Probab=91.33  E-value=0.11  Score=33.00  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (594)
                      ..+..+|..++..++|++|+..|.+++++.|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            36788999999999999999999999987764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.88  E-value=0.082  Score=53.83  Aligned_cols=118  Identities=17%  Similarity=0.039  Sum_probs=85.2

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      ...-.-+++.+..+++-|....++..+++.+..-    .-++.+|++++.-   ..++.+|.-.|++.-..-|..+..+.
T Consensus       139 ~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL----tQLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~lln  211 (299)
T KOG3081|consen  139 AAALNVQILLKMHRFDLAEKELKKMQQIDEDATL----TQLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLN  211 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH----HHHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHc
Confidence            3333444566667777777777777766554310    0012234444322   34688999999988887777888999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      ..+.|+..+|+|++|...++.||.-++++++...++-.+-..++.
T Consensus       212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  212 GQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             cHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999988888777555543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.83  E-value=0.044  Score=56.06  Aligned_cols=74  Identities=24%  Similarity=0.328  Sum_probs=67.1

Q ss_pred             eeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653          145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       145 ~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                      ......|+-..|.+.++++.|..+..+.|.++|.++..+--||.+|.++|.+.-|+.+++..++..|+++.+..
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            34456788888999999999999999999999999999999999999999999999999999999999876543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.74  E-value=0.062  Score=58.99  Aligned_cols=108  Identities=15%  Similarity=0.144  Sum_probs=81.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-cccchH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVK  181 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-dP~~~k  181 (594)
                      .-..+.++.++.+.|+.++||+.|.+.++.+|....       ..++.|+-.|++.+++|.++-..+.+-=++ -|+.+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence            344566888999999999999999999988776432       447899999999999999998887775433 267777


Q ss_pred             HHHHhccchhh-hhh---------------HHHHhhhcccccccCCCCChHH
Q 007653          182 ALYRRGQAYKD-IGR---------------LEEAVSDLSNAHEVSPDDGTIA  217 (594)
Q Consensus       182 a~~~rg~al~~-lg~---------------~~eAi~~lekAl~l~P~~~~a~  217 (594)
                      ..|..+....+ .++               -..|++.+++|++.+|+-++..
T Consensus       332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence            77777665433 221               1347788999999999876543

The molecular function of this protein is uncertain.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.60  E-value=0.038  Score=66.14  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=82.2

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc-----
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-----  177 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP-----  177 (594)
                      +..+..+|..++..|++.+|..++.+++.+....... .......++.+++.+++..|++++|...+.+++.+..     
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence            3466778889999999999999999999875443110 0011122355778889999999999999999887532     


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                      ....++..+|.++...|++++|...+++++.+..
T Consensus       610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            2466777899999999999999999999977643

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.39  E-value=0.13  Score=62.17  Aligned_cols=102  Identities=13%  Similarity=0.031  Sum_probs=61.2

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHH
Q 007653          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  199 (594)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eA  199 (594)
                      +...+.|++|-+++...          .+|..|.-+|.+..+|.+|.+.++.-++.--...+.|...|..+++..+-++|
T Consensus      1514 esl~kVFeRAcqycd~~----------~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1514 ESLKKVFERACQYCDAY----------TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred             HHHHHHHHHHHHhcchH----------HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHH
Confidence            44445566665554332          25556666666666666666666666655555566666666666666666666


Q ss_pred             hhhcccccccCCC--CChHHHHHhHHHHHhhhcc
Q 007653          200 VSDLSNAHEVSPD--DGTIADVLRDAKEILMKED  231 (594)
Q Consensus       200 i~~lekAl~l~P~--~~~a~~~l~~a~~~l~~~~  231 (594)
                      ...+.+|++.-|.  |.++......++++.++.+
T Consensus      1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            6666666666665  4555555555555555543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=90.13  E-value=0.077  Score=51.44  Aligned_cols=104  Identities=13%  Similarity=0.021  Sum_probs=81.4

Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee-ecccchHHHHHhccchhhhhhH
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YDAKNVKALYRRGQAYKDIGRL  196 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~-ldP~~~ka~~~rg~al~~lg~~  196 (594)
                      +.+..+..-.+.+++.|...          -.+.++..+.++|+|.||...|.+++. +--+++..+.-++.+...++++
T Consensus        71 dP~R~~Rea~~~~~~ApTvq----------nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          71 DPERHLREATEELAIAPTVQ----------NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHH----------HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            44555555556666666654          367889999999999999999999874 4567888999999999999999


Q ss_pred             HHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhcc
Q 007653          197 EEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKED  231 (594)
Q Consensus       197 ~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~~~  231 (594)
                      .+|...+++..+.+|..  +.-.-.++.+...++++.
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence            99999999999999975  455566666666665544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.92  E-value=0.083  Score=52.68  Aligned_cols=97  Identities=18%  Similarity=0.172  Sum_probs=70.6

Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-------chhhhhhcceeeeecc------c
Q 007653          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-------YDECIKVGSEVLAYDA------K  178 (594)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-------y~eAi~~~~~AL~ldP------~  178 (594)
                      .+.....+++|+..|.-||-...-..  +.....+.+++.+|.+|+.+++       +..|++.|.+++....      +
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~--~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKK--EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            56667788999999998876432111  1111345678889999999988       4455666666654432      3


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                      .....|.+|..+.++|++++|+.+|.+.+..-
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999998654

>PLN03218 maturation of RBCL 1; Provisional

Probab=89.71  E-value=0.15  Score=62.15  Aligned_cols=92  Identities=11%  Similarity=0.005  Sum_probs=48.6

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec-ccchH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVK  181 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-P~~~k  181 (594)
                      .|..+...|.+.|++++|+..|.+..+.  .|+          ...|..+..+|.+.|++++|++.+.+.++.. +.+..
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            3444444555666666666666655542  122          1234445555555556666665555555432 22444


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccc
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                      .|..+..+|.+.|++++|++.|++.
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            5555555666666666666665544

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.53  E-value=0.16  Score=46.68  Aligned_cols=78  Identities=12%  Similarity=0.028  Sum_probs=58.6

Q ss_pred             chHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653          100 FNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      .-..+..++++..+.+..+   -.+.|.+++..+...+...       .-.|.+-++..|+++++|+.++.+++..|+.+
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-------RRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            3345677777777766554   4678888988886222221       13477889999999999999999999999999


Q ss_pred             ccchHHHH
Q 007653          177 AKNVKALY  184 (594)
Q Consensus       177 P~~~ka~~  184 (594)
                      |+|..+.-
T Consensus       102 ~~n~Qa~~  109 (149)
T KOG3364|consen  102 PNNRQALE  109 (149)
T ss_pred             CCcHHHHH
Confidence            99987643

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=89.51  E-value=0.11  Score=57.71  Aligned_cols=96  Identities=13%  Similarity=0.038  Sum_probs=84.2

Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchh
Q 007653          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (594)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~  191 (594)
                      .+..+|+..+|+.||..++.+.+....       -...+.+|.++.+.|...+|--.+..|+.-.|....-+|.++.+|.
T Consensus       222 YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~a  294 (886)
T KOG4507|consen  222 YWRIKGEPYQAVECAMRALHFSSRHNK-------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYA  294 (886)
T ss_pred             HHHHcCChhhhhHHHHHHhhhCCcccc-------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHH
Confidence            345678899999999999998887643       4467889999999999999999999999888877778999999999


Q ss_pred             hhhhHHHHhhhcccccccCCCCC
Q 007653          192 DIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       192 ~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      .++.|...+.+|..+.+.+|...
T Consensus       295 ml~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  295 MLGEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             HHhhhhhhhhhhhhhhccCcchh
Confidence            99999999999999999999753

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.24  E-value=0.34  Score=58.83  Aligned_cols=118  Identities=13%  Similarity=0.008  Sum_probs=102.9

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--  178 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--  178 (594)
                      +....|..+.-+|-+.++|++|.++|+.-++.....         ...|...+..+++..+-++|...+.+||+--|.  
T Consensus      1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred             chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence            334566777778999999999999999999877644         348999999999999999999999999999998  


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      |.+...--+..-+..|+-+.+...|+..+.-+|...++|..+-....+.
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHcc
Confidence            8888888899999999999999999999999999999999887765553

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.13  E-value=0.13  Score=51.35  Aligned_cols=60  Identities=20%  Similarity=0.099  Sum_probs=54.9

Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      .+.+.++++.|.+.|.+++++.|..         ...|..++....+.|+++.|.+.|++.|++||.+-
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w---------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEW---------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchh---------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            4678899999999999999999998         45899999999999999999999999999999763

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.40  E-value=0.86  Score=49.97  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ...-++.+...+....++.+...|-..+-.||-.+|.+..          +...-..-+++++++.|...|++-|+..|.
T Consensus       400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----------Fk~YIelElqL~efDRcRkLYEkfle~~Pe  469 (677)
T KOG1915|consen  400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL----------FKGYIELELQLREFDRCRKLYEKFLEFSPE  469 (677)
T ss_pred             cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH----------HHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence            3445677777888888889999999999999998888742          222223346788999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                      +..+|...|..-..+|+.+.|...|+-|+...
T Consensus       470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  470 NCYAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999888653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=87.92  E-value=0.12  Score=52.57  Aligned_cols=70  Identities=17%  Similarity=0.114  Sum_probs=61.3

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeeccc---chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA  217 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~  217 (594)
                      .+++-|...++-|+|.+|+..|+.+....|.   ..++...++.++++.++|++|+..+++-+.+.|.++.+.
T Consensus        36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d  108 (254)
T COG4105          36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD  108 (254)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence            4566666678899999999999999988775   467999999999999999999999999999999987654

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=87.61  E-value=0.16  Score=55.79  Aligned_cols=94  Identities=18%  Similarity=0.130  Sum_probs=78.8

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh-HHH
Q 007653          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEE  198 (594)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~-~~e  198 (594)
                      ..-+..|++|+...+.+.         .+|.+......+-+.|.+....|.++|.++|+++..|..-+.-.+..+. .+.
T Consensus        88 ~rIv~lyr~at~rf~~D~---------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s  158 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDV---------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES  158 (568)
T ss_pred             HHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence            445667999999888774         3677766555566669999999999999999999999999999988877 899


Q ss_pred             HhhhcccccccCCCCChHHHHHhH
Q 007653          199 AVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       199 Ai~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      |...+.++|..+|+.+.+|..+=.
T Consensus       159 aRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  159 ARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HHHHHHHHhhcCCCChHHHHHHHH
Confidence            999999999999999998875543

>PRK10941 hypothetical protein; Provisional

Probab=87.45  E-value=0.14  Score=52.83  Aligned_cols=76  Identities=12%  Similarity=-0.081  Sum_probs=65.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...+.++-..+.+.++|..|+.+.+..+.+.|.++.         -+.-||.+|.+++.+..|+.+++.-|+..|+.+.+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            355667777899999999999999999999999963         46679999999999999999999999999999887


Q ss_pred             HHHhc
Q 007653          183 LYRRG  187 (594)
Q Consensus       183 ~~~rg  187 (594)
                      ..-+-
T Consensus       252 ~~ik~  256 (269)
T PRK10941        252 EMIRA  256 (269)
T ss_pred             HHHHH
Confidence            55443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.26  E-value=0.2  Score=35.22  Aligned_cols=30  Identities=40%  Similarity=0.516  Sum_probs=24.2

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      +.++.++|.+|...|+|++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357788999999999999999999888764

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.18  E-value=0.16  Score=49.16  Aligned_cols=104  Identities=13%  Similarity=0.060  Sum_probs=77.2

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc--
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA--  177 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP--  177 (594)
                      ...-..+..+|..|++.|++++|++.|.++.+..-...      ..+..++++-.+.+..++|..+..+..++-.+--  
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~  106 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG  106 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence            34557899999999999999999999999888654332      1244667777777888999999888888755422  


Q ss_pred             cc----hHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          178 KN----VKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       178 ~~----~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                      .+    .+.....|.++...++|.+|...|-.++.-
T Consensus       107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            22    223445677888889999999988776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03077 Protein ECB2; Provisional

Probab=87.12  E-value=0.28  Score=58.68  Aligned_cols=99  Identities=11%  Similarity=0.055  Sum_probs=67.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---c
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---D  176 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---d  176 (594)
                      ....|..+...|.+.|++++|+..|++.++.  .|+.          ..|..+-.+|.+.|++++|.+.++...+.   .
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~----------~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~  622 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE----------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT  622 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc----------ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence            4556788888888889999999998887653  3333          23455555666777788888877776532   3


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      | +...|..+..+|.+.|++++|.+.+++. .+.|+
T Consensus       623 P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        623 P-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             C-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            3 3456677777777778888887777764 24454

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=87.03  E-value=0.22  Score=44.23  Aligned_cols=96  Identities=11%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-----------ccchhhhhhcceeeeecc
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----------KQYDECIKVGSEVLAYDA  177 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-----------g~y~eAi~~~~~AL~ldP  177 (594)
                      ++..++.+|++-+|++..++.+...++....      ...+.-.|.+++++           .-...++++|.++..+.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            3456889999999999999999877666421      01222334444332           235678899999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                      ..+..+|.+|.=+-....|++++.-++++|.+.
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999999999999888889999999999988764

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.66  E-value=0.41  Score=33.60  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=27.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (594)
                      +..+.++|..+...|+|++|+.+|.+++.+...
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~   34 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRER   34 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence            457889999999999999999999999986443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.66  E-value=0.3  Score=49.82  Aligned_cols=70  Identities=11%  Similarity=0.102  Sum_probs=62.2

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      ..-.+++.+.++...++|.+|...|.+.+..++.++         .+-+|.|.|++-+|+..+|++..+.++.++|...
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~---------~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA---------VANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCch---------hhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            345677888899999999999999999999999985         4778999999999999999999999999999753

>PLN03218 maturation of RBCL 1; Provisional

Probab=86.32  E-value=0.21  Score=60.92  Aligned_cols=61  Identities=13%  Similarity=0.066  Sum_probs=33.5

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeec-ccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ld-P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                      .|..+-.+|.+.|++++|++.|++..+.+ +.+...|..+..+|.+.|++++|+..|++..+
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34445555555566666666655555444 23445555555556666666666666655443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=86.09  E-value=0.051  Score=57.35  Aligned_cols=107  Identities=12%  Similarity=0.067  Sum_probs=85.9

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccccc-ccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  176 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~-~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------  176 (594)
                      +.+..+|..+-+.++|++|+.+..+|.++..... .......+....+..+.+|+.+|+.-.|.++|+++-++.      
T Consensus       163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence            4566778888899999999999999998876654 222333445566788889999999999999999997764      


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                      +.++....-.|.+|...|+.+.|..-|+.|..+-
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence            4566777778999999999999999999887653

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=85.62  E-value=0.3  Score=50.61  Aligned_cols=128  Identities=13%  Similarity=0.038  Sum_probs=85.9

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccc-cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYS-EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~-~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++++..-+........-....|...+..-++ .++.+.|...|+.+++..|.+..         +|+.....+.++++.+
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------~~~~Y~~~l~~~~d~~   87 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------FWLEYLDFLIKLNDIN   87 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHTT-HH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhCcHH
Confidence            4444444444444444445566677766445 67777799999999999998854         5666667788899999


Q ss_pred             hhhhhcceeeeecccch--H-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          164 ECIKVGSEVLAYDAKNV--K-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~--k-a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                      .|...|++++..-|...  + .|-....--...|+++...+.++++.++-|++..+.....
T Consensus        88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~  148 (280)
T PF05843_consen   88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD  148 (280)
T ss_dssp             HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999998766554  3 3444444446778888888888888888888665544333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=85.41  E-value=0.38  Score=52.56  Aligned_cols=115  Identities=14%  Similarity=0.037  Sum_probs=93.6

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus        90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~  169 (594)
                      +++..+++.+.-....+...|.--..++++..|-..|++||..+-.+         +++|+..+.|-++-+....|...+
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------itLWlkYae~Emknk~vNhARNv~  130 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------ITLWLKYAEFEMKNKQVNHARNVW  130 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------chHHHHHHHHHHhhhhHhHHHHHH
Confidence            44444555555556677777777788899999999999999987666         668999999999999999999999


Q ss_pred             ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      ++|+.+-|.--+.||..-..--.+|+..-|...|++=+...|+.
T Consensus       131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence            99999999988888887777777888888888888888887763

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=83.55  E-value=0.34  Score=44.55  Aligned_cols=73  Identities=23%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhhc
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVG  249 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~e~~~  249 (594)
                      .....++..++.++...|++++|+..+++++.++|-+..++..+-.+....++...+...+........++-.
T Consensus        59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg  131 (146)
T PF03704_consen   59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG  131 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence            3456677888899999999999999999999999999999999999999988877766666665555554443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.99  E-value=0.55  Score=49.43  Aligned_cols=108  Identities=10%  Similarity=-0.023  Sum_probs=81.3

Q ss_pred             hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653           93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        93 ~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      ++-++..|...-+++---..+|-.|+...-...+++.|-. +++.|-      ..++.--++.|+...|-|++|.+..++
T Consensus       127 dklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~------~sYv~GmyaFgL~E~g~y~dAEk~A~r  200 (491)
T KOG2610|consen  127 DKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC------YSYVHGMYAFGLEECGIYDDAEKQADR  200 (491)
T ss_pred             HHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH------HHHHHHHHHhhHHHhccchhHHHHHHh
Confidence            3344445555556666666777778777777778887755 444431      122223468899999999999999999


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                      ++.||+.+.-+.+..+-++...+++.++++...+-
T Consensus       201 alqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  201 ALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             hccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            99999999999999999999999999999887654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.67  E-value=0.33  Score=48.70  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcc
Q 007653           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGS  170 (594)
Q Consensus        92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~  170 (594)
                      +|.......+.+..+..-++ .|+..+..+|+.++.++|++..+....   ..-+..+.-+|..|-. +.+++.||.+|+
T Consensus        63 ~h~k~~skhDaat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---~~aAk~~~~iaEiyEsdl~d~ekaI~~YE  138 (288)
T KOG1586|consen   63 LHLKAGSKHDAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---TMAAKHHIEIAEIYESDLQDFEKAIAHYE  138 (288)
T ss_pred             HHHhcCCchhHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---HHHHhhhhhHHHHHhhhHHHHHHHHHHHH
Confidence            34333444555555555555 456669999999999999987654320   0001123345555543 378899999998


Q ss_pred             eeeeec------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          171 EVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       171 ~AL~ld------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                      .+-+.-      ..--+++...+..-..+++|.+|+..|++.....-+|..+
T Consensus       139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            876442      1223445555555678999999999999988776666543

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=82.60  E-value=2  Score=30.92  Aligned_cols=31  Identities=26%  Similarity=0.645  Sum_probs=26.9

Q ss_pred             HHHHhcCcHHHHHHHHHHhhcCCHHHHhhhhhh
Q 007653          483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQ  515 (594)
Q Consensus       483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~  515 (594)
                      .+..+|+||.+++++..|+.|  |+.+..|.++
T Consensus         3 ~~~~~l~~P~~~~~l~~~~~n--P~~~~~~~~~   33 (41)
T smart00727        3 EMALRLQNPQVQSLLQDMQQN--PDMLAQMLQE   33 (41)
T ss_pred             HHHHHHcCHHHHHHHHHHHHC--HHHHHHHHHh
Confidence            577888999999999999999  9988887764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.89  E-value=0.94  Score=45.84  Aligned_cols=109  Identities=12%  Similarity=0.047  Sum_probs=79.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  175 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---  175 (594)
                      .++.+..-..++-......+.++|+.+|++++.+......   ...-...|...+.+|.++.+|.+|...+.+-..+   
T Consensus       106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr---~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~  182 (308)
T KOG1585|consen  106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR---DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK  182 (308)
T ss_pred             CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence            4555566666777788888999999999999998765532   1111235677888999999999998776664332   


Q ss_pred             -c--ccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007653          176 -D--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       176 -d--P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~  210 (594)
                       +  ++..+++.-.-.+|+...+|..|...|+....+.
T Consensus       183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip  220 (308)
T KOG1585|consen  183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP  220 (308)
T ss_pred             HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence             2  4445566666677777889999999999987764

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.33  E-value=0.87  Score=29.41  Aligned_cols=26  Identities=23%  Similarity=0.119  Sum_probs=21.6

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhccc
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSN  205 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lek  205 (594)
                      +.+++.+|.+|...|++++|...+++
T Consensus         1 ~~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    1 PRARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            35788899999999999999988763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=81.23  E-value=1.5  Score=49.34  Aligned_cols=110  Identities=15%  Similarity=-0.019  Sum_probs=87.9

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhh-cceeeeecccchHHHHHh-
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV-GSEVLAYDAKNVKALYRR-  186 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~-~~~AL~ldP~~~ka~~~r-  186 (594)
                      +...+...++...++.....++..+|.+         +.++.|++.+....|....++.. +..+..+.|++..+...+ 
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  143 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPEN---------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI  143 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCccc---------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence            4666677788888899999999999888         55899999888777766665555 455889999998887777 


Q ss_pred             -----ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          187 -----GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       187 -----g~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                           +..+..+|+..++..+++++..+.|+++.+...+-.+.+..
T Consensus       144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence                 88888999999999999999999999977666555553333

>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function

Probab=80.84  E-value=2.9  Score=35.46  Aligned_cols=43  Identities=14%  Similarity=0.425  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhhcCCHHHHhhhhhhhccccchhhHHHHHHhhhc
Q 007653          492 AMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS  534 (594)
Q Consensus       492 ~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~a~~~~~~~~~  534 (594)
                      =++++...=++++|++.+-.-|+|+|+.++++||++-.+-|+.
T Consensus         3 i~qqiVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~   45 (85)
T PF11116_consen    3 IIQQIVNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRG   45 (85)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence            3567777778999999999999999999999999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	594
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		6e-14
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-11
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		8e-11
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		7e-10
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-08
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-08
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-07
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		6e-06
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		6e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		8e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		9e-06
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		3e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-04

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 8/141 (5%)
Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQGIHSSE 140
           +AR D  +     AA   K  GN L+ E +   A+Q+Y +A           L G +   
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224
Query: 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200
              +   C LN  +C +K K+YDE I   + VL  + KN KAL+RRG+A  ++G+++ A 
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284
Query: 201 SDLSNAHEVSPDDGTIADVLR 221
            D   A + +PDD  I   LR
Sbjct: 285 DDFRKAQKYAPDDKAIRRELR 305

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           ++ + L+K+GNEL+  G +  AL  Y  A     G+ ++     +L    N  +C+LK +
Sbjct: 26  SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACHLKLE 79
Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + L
Sbjct: 80  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Query: 221 RD 222
           R+
Sbjct: 140 RN 141

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----EGRTL---LLACSLNSMSCYLK 158
           LK  GN  +    +  A++KY    + ++G  ++    +G  L    L+C LN  +C LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-A 217
              +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A E++P+D  I A
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 218 DVLRDAKEILMKED 231
           ++L+  ++I  ++D
Sbjct: 346 ELLKVKQKIKAQKD 359

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---------GRTLLLACSLNSMSCY 156
           +K++GNE + +   + A+ KY  A      IH+ E          + + ++C+LN  +CY
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
            K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  A  ++P++  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 103 AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156
           A ++K++G   +  G++  A+ +Y      L  +  L    S    + LLA  LN   CY
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211
           LK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     EV+P
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 103 AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156
           A ++K++G   +  G++  A+ +Y      L  +  L    S    + LLA  LN   CY
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           LK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 89  RARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSE 140
           +A+   +MN E     + ++K++G   + EG++  AL +Y      L  + +     + +
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200
            + L LA  LN   C+LK + +   I+  ++ L  D+ N K L+RRG+A+  +   E A 
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELAR 250
Query: 201 SDLSNAHEVSPDD 213
           +D     ++ P++
Sbjct: 251 ADFQKVLQLYPNN 263

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 105 MLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158
           ++K++G   + EG++  AL +Y      L  + +     + + + L LA  LN   C+LK
Sbjct: 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            + +   I+  ++ L  D+ N K L RRG+A+  +   E A +D     ++ P++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 102 AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 149
           A  ++ ++GN LY EG    A  KY   +   KNLQ          I   +  T LL   
Sbjct: 7   AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 63
Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
           LN   C L  ++Y E +   S +L     NVKA ++RG+A+  +   +EA +D +   E+
Sbjct: 64  LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 123
Query: 210 SP 211
            P
Sbjct: 124 DP 125

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 102 AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 149
           A  ++ ++GN LY EG    A  KY   +   KNLQ          I   +  T LL   
Sbjct: 13  AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 69
Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
           LN   C L  ++Y E +   S +L     NVKA ++RG+A+  +   +EA +D +   E+
Sbjct: 70  LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 129
Query: 210 SP 211
            P
Sbjct: 130 DP 131

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           N+A+  K  GN  Y +G +  A++ Y   +K L+   ++       +   N  + Y K  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYY---QKALELDPNNA------SAWYNLGNAYYKQG 57
Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            Y + I+   + L  D  N KA YRRG AY   G  ++A+ D   A E+ P++      L
Sbjct: 58  DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 221 RDAKE 225
            +AK+
Sbjct: 118 GNAKQ 122

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           L +   EL  +GR+++A  KY    K    I     R+    C      C+ K ++  E 
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH-----CFSKDEKPVEA 314
Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
           I+V SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ 
Sbjct: 315 IRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQR 374
Query: 226 IL 227
           +L
Sbjct: 375 LL 376

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 28/241 (11%)
Query: 9   EMIRLAQEQMNRMSPDDFA-------RIQQQMMANPELMRIATEN-MKNMRPE----DLK 56
           EM RL  + +N     D+        +I +  + + EL  +  E  +K   P     DLK
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 57  CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRAR----IDAQMNYEFNAAKMLKK---- 108
            AA +L +   E   +I          E++    R    +D      F   K +KK    
Sbjct: 202 -AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 109 --QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
                EL  +GR+++A  KY    K    I     R+    C      C+ K ++  E I
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAI 315
Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226
           +V SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
Query: 227 L 227
           L
Sbjct: 376 L 376

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           L +   EL  +GR+++A  KY    K    +     R+    C      C+ K ++  E 
Sbjct: 237 LIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH-----CFSKDEKPVEA 291
Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
           I++ SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ 
Sbjct: 292 IRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351
Query: 226 IL 227
           +L
Sbjct: 352 LL 353

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	594
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	6e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-14
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	8e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	6e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	7e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	7e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-04

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  128 bits (323), Expect = 2e-34
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 9/146 (6%)

Query: 95  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLL 145
               E    +A  +K++GNE + +   + A+ KY  A          +        + + 
Sbjct: 28  DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87

Query: 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 205
           ++C+LN  +CY K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  
Sbjct: 88  ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147

Query: 206 AHEVSPDDGTIADVLRDAKEILMKED 231
           A  ++P++  I +        L +  
Sbjct: 148 AASLNPNNLDIRNSYELCVNKLKEAR 173

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  124 bits (314), Expect = 1e-33
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------RTLLLACSLN 151
            + + L+++GNEL+ +  +  A+  Y  A   L  +   E              +    N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211
              CYL      E  +  SEVL  +  N KAL+RR +A     +L+EA  DL       P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 212 DDGTIADVLRDAKEILMKE 230
              ++             E
Sbjct: 129 AAASVVAREMKIVTERRAE 147

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  125 bits (316), Expect = 4e-32
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 56  KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS 115
           K       + PP   A++  ++     +E    +AR D  +     AA   K  GN L+ 
Sbjct: 134 KEGNFSFPNVPPM--ADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFK 191

Query: 116 EGRFSNALQKYLLAKKNLQGIHSSE--------GRTLLLACSLNSMSCYLKTKQYDECIK 167
           E +   A+Q+Y +A   +      +           +   C LN  +C +K K+YDE I 
Sbjct: 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
             + VL  + KN KAL+RRG+A  ++G+++ A  D   A + +PDD  I   LR   E  
Sbjct: 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311

Query: 228 MKED 231
               
Sbjct: 312 KALY 315

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  125 bits (315), Expect = 6e-32
 Identities = 41/219 (18%), Positives = 88/219 (40%), Gaps = 9/219 (4%)

Query: 22  SPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANA 80
               F   + + +  P  +  A + M+      +         +  +E  +I        
Sbjct: 63  RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKY 122

Query: 81  SPEEIATMRARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ---- 134
                +  +A+   +MN E     + ++K++G   + EG++  AL +Y      L+    
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182

Query: 135 --GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192
                + + + L LA  LN   C+LK + +   I+  ++ L  D+ N K L RRG+A+  
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242

Query: 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231
           +   E A +D     ++ P++      L   ++ + ++ 
Sbjct: 243 VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  116 bits (293), Expect = 1e-28
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 95  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-------KKNLQGIHSSEGRTLLLA 147
            ++     ++ LK  GN  +    +  A++KY          +   +    ++ + + L+
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207
           C LN  +C LK   +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A 
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 208 EVSPDDGTIADVLRDAKEIL 227
           E++P+D  I   L   K+ +
Sbjct: 335 EIAPEDKAIQAELLKVKQKI 354

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  112 bits (280), Expect = 2e-26
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 95  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLAC 148
               +   A ++K++G   +  G++  A+ +Y      L+  +           + LLA 
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
            LN   CYLK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     E
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379

Query: 209 VSPDDGTIADVLRDAKEILMKED 231
           V+P +      +   ++   + +
Sbjct: 380 VNPQNKAARLQISMCQKKAKEHN 402

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 94.3 bits (235), Expect = 5e-23
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           + + L+K+GNEL+  G +  AL  Y  A      +              N  +C+LK + 
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQA------LGLDATPQDQAVLHRNRAACHLKLED 80

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221
           YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + LR
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           A+ LK Q N+ +    + NA++ Y  A      I  +    +      N    YL+T+ Y
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQA------IELNPSNAIYYG---NRSLAYLRTECY 63

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
              +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       ++
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

Query: 223 AKEILMKED 231
             +I+ ++ 
Sbjct: 124 CNKIVKQKA 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------SC 155
           +A+ LK+QGN L+   ++  A   Y                  +    L ++       C
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACY------------GRA---ITRNPLVAVYYTNRALC 52

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215
           YLK +Q ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +   
Sbjct: 53  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 112

Query: 216 IADVLRDAKEILMK 229
             +   D    L  
Sbjct: 113 --NFGDDIPSALRI 124

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 81.9 bits (203), Expect = 7e-19
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC 148
            A I+ ++      A+  K +GNE + +G +  A++ Y       + +       +L + 
Sbjct: 5   LAYINPEL------AQEEKNKGNEYFKKGDYPTAMRHYN------EAVKRDPENAILYS- 51

Query: 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
             N  +C  K  ++   +      +  D+K +K   R+      +    +A     +A +
Sbjct: 52  --NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109

Query: 209 VSPDDGTIADVLRDAK 224
           V P +    + +R+  
Sbjct: 110 VDPSNEEAREGVRNCL 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 80.7 bits (200), Expect = 2e-18
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
              LK++GN+  S G   +ALQ Y  A      I       +L +   N  + Y K   Y
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEA------IKLDPHNHVLYS---NRSAAYAKKGDY 54

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
            +  + G + +       K   R+  A + + R EEA        +   ++  + + L++
Sbjct: 55  QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114

Query: 223 AKE 225
            + 
Sbjct: 115 MEA 117

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 78.8 bits (195), Expect = 9e-18
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
             A+ LK +GNE      F  A+  Y  A      I  +    +      N  + Y K  
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKA------IELNPANAVYFC---NRAAAYSKLG 60

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            Y   ++     +  D    KA  R G A   + +  EAV+    A E+ PD+ T    L
Sbjct: 61  NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120

Query: 221 RDAKEILMK 229
           + A+  L +
Sbjct: 121 KIAELKLRE 129

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 22/134 (16%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------SCY 156
           A+  + +G E +++  + NA++ Y                  +     ++       +  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---------------IKRAPEDARGYSNRAAAL 48

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
            K   + E I   ++ +  D   V+A  R+  A   +     A+  L  A     +    
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN- 107

Query: 217 ADVLRDAKEILMKE 230
               R+  ++  K 
Sbjct: 108 GSSAREIDQLYYKA 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 77.3 bits (191), Expect = 3e-17
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 93  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 152
            + MN +   A M+K +GNE + +G +  A++ Y       + I  +     L +   N 
Sbjct: 8   HSHMNPD--LALMVKNKGNECFQKGDYPQAMKHYT------EAIKRNPKDAKLYS---NR 56

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +CY K  ++   +K   E +  +   +K   R+  A + +    +A+     A ++   
Sbjct: 57  AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

Query: 213 DGTIADVLRDAKE 225
               AD  +    
Sbjct: 117 CKEAADGYQRCMM 129

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 79.2 bits (195), Expect = 2e-16
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           +A+ LK+QGN L+   ++  A   Y  A      I  +    +      N   CYLK +Q
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNPLVAVYYT---NRALCYLKMQQ 53

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +         
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 222 DAKEILMKE 230
            +   + K+
Sbjct: 114 PSALRIAKK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.1 bits (198), Expect = 4e-16
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           L +   EL  +GR+++A  KY    K              +        C+ K ++  E 
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMK-----TEPSIAEYTVRSKERICHCFSKDEKPVEA 314

Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
           I+V SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ 
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374

Query: 226 ILMKED 231
           +L +  
Sbjct: 375 LLKQSQ 380

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYL 157
              +   + G +L + G+ ++AL ++  A     +    +                + +L
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA------------TVFL 71

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              +    +   ++V+        A  +RG      G+L+EA  D     + +P +
Sbjct: 72  AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEG---RTLLLACSLNSMSCYLKTKQYD 163
           G+ L  +G+   A   +        +      ++    ++  +    +       +  Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             I    ++L     + +    R + +   G   +A+SDL  A ++  D+
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 90  ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLAC 148
            +       + +  + L+ Q    +  G ++ A+         L+  +  +E R  L A 
Sbjct: 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWDAELR-ELRAE 185

Query: 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
                 C++K  +  + I            N +A Y+    Y  +G  E ++S++    +
Sbjct: 186 ------CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 209 VSPDDGTIADVLRDAKEIL 227
           +  D        +  K++ 
Sbjct: 240 LDQDHKRCFAHYKQVKKLN 258

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 20/106 (18%)

Query: 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167
             G +L +E  +  ++      K    G                     L   Q  + + 
Sbjct: 8   SSGVDLGTENLYFQSMADV--EKHLELGK------------------KLLAAGQLADALS 47

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +  D  N  A YRR   +  +G+ + A+ DL+   ++  D 
Sbjct: 48  QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKT 159
             A   K+ GN+ Y +  F  AL+ Y  AK+    +  +          + + +  Y + 
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN------MTYITNQAAVYFEK 51

Query: 160 KQYDECIKVGSEVLAYDAKN-------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
             Y++C ++  + +    +N        KA  R G +Y    + ++A+   + +      
Sbjct: 52  GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

Query: 213 DGTIADVLRDAKEILMKED 231
              +    + A++IL +++
Sbjct: 112 PDVLKK-CQQAEKILKEQE 129

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 93  DAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN 151
               +Y+       L +   EL  +GR+++A  KY    K       S     + +    
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEYTVRS--KE 276

Query: 152 SM-SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
            +  C+ K ++  E I++ SEVL  +  NV AL  R +AY      +EA+ D   A E +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 211 PDDGTIADVLRDAKEIL 227
            +D  I + L  A+ +L
Sbjct: 337 ENDQQIREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.8 bits (156), Expect = 4e-11
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159
            +   + G +L + G+ ++AL ++  A     +    +                + +L  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA------------TVFLAM 50

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +    +   ++V+A       A  +RG      G+L+EA  D     + +P +
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 10/136 (7%)

Query: 98  YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157
            + +  + L+ Q  + +    ++ A+       +    +  +E R  L A       C++
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILE--VCVWDAELR-ELRAE------CFI 165

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217
           K  +  + I          + N +A Y+    Y  +G  E ++S++    ++  D     
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225

Query: 218 DVLRDAKEIL-MKEDG 232
              +  K++  + E  
Sbjct: 226 AHYKQVKKLNKLIESA 241

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.0 bits (169), Expect = 6e-14
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           +  LK +GN   +   +S A+  Y  A      +  +    + L+   N  + Y  + Q+
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQA------LSIAPANPIYLS---NRAAAYSASGQH 61

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVL 220
           ++  +        D K  KA  R G A  D+   + A        E   + G+ A    L
Sbjct: 62  EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121

Query: 221 RDAKEILMKE 230
              K  + + 
Sbjct: 122 ETTKRKIEEA 131

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKT 159
           +AA   K  GN  Y +  F  A   Y  A +    +  S           N+ +  Y + 
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN------ITFYNNKAAVYFEE 55

Query: 160 KQYDECIK-------VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           K++ EC++       VG E  A      KA+ R G A++    L  AV     +     D
Sbjct: 56  KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

Query: 213 DGTIADVLRDAK 224
              +   +++ +
Sbjct: 116 PELVKK-VKELE 126

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
            A+ LK Q N+ +    + NA++ Y  A      I  +    +      N    YL+T+ 
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQA------IELNPSNAIYYG---NRSLAYLRTEC 55

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221
           Y   +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       +
Sbjct: 56  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115

Query: 222 DAKEILMKED 231
           +  +I+ ++ 
Sbjct: 116 ECNKIVKQKA 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.0 bits (160), Expect = 2e-11
 Identities = 63/470 (13%), Positives = 119/470 (25%), Gaps = 124/470 (26%)

Query: 190 YKDIGR--LEEAVSDLSNAHEVSPDDGTIADVLR------DAKEILMKEDGHHGPR---G 238
           YKDI     +  V +         D   + D+ +      +   I+M +D   G      
Sbjct: 18  YKDILSVFEDAFVDNF--------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 239 LLIEEITEEVGAVSSGSHRSSGTEY------LAREKADPSKSEH---SANGRGSSTKPEF 289
            L+ +  E V        R     Y      +  E+  PS           R  +    F
Sbjct: 70  TLLSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 290 LPDLKDDPESIRSFQNFISNANPDSFAALSG----GK---AGEISPDMFKAVSIMINKM- 341
                   +     +  +    P     + G    GK   A ++    +K    M  K+ 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIF 185

Query: 342 --------SPEELQRMIQ----------IASSFQGENPHANGDSIETNFNGFRPGSTPPN 383
                   SPE +  M+Q           + S    N      SI+              
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------- 237

Query: 384 MRPDMLKTASDVMSKMSSEDLQKMFEMES----TLKNKVAGQASTAVDPKGISSDPGPR- 438
           ++    +    V+  + +      F +      T + K      +A     IS D     
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 439 --LSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPST-----ADLQQMRN----- 486
               E +          +         P     +  + +P         ++         
Sbjct: 298 LTPDEVKSLLL----KYLDCRPQD--LPR----EVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 487 -QMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMML 545
             +N   +  +  S +  + P     M ++  +             +S          ++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLS----------LI 395

Query: 546 WADRVQRGVQGV-----KKTKNWLLGKPVMSEGSFWYYLRFYSNNIHGWQ 590
           W D ++  V  V     K +   L+ K               S  I    
Sbjct: 396 WFDVIKSDVMVVVNKLHKYS---LVEK--------QPKESTIS--IPSIY 432

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 42/316 (13%), Positives = 92/316 (29%), Gaps = 107/316 (33%)

Query: 6   MDPEMIRLAQEQMNRMSP-----------DDFARIQQ-QMMANPELMRIATENMKNMRPE 53
             P+ +     ++   +P           D  A     + +   +L  I   ++  + P 
Sbjct: 313 CRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 54  DLKCAAEQL------THTPP------------EEVAEIGEKLANASPEEIATMRARIDAQ 95
           + +   ++L       H P              +V  +  KL   S              
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-------------- 415

Query: 96  MNYEFNAAKMLKKQGNELYSEGRFS-NALQKYLLAK-KNLQGIHSSEGRTLLLACSLNSM 153
                    +++KQ      E   S  ++   L  K +N   +H    R+++        
Sbjct: 416 ---------LVEKQPK----ESTISIPSIYLELKVKLENEYALH----RSIV-------- 450

Query: 154 SCYLKTKQYD--ECIKVGSEV-----LAYDAKNVK-----ALYRR--------------- 186
             Y   K +D  + I    +      + +  KN++      L+R                
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 187 GQAYKDIGRLEEAVSDLSN--AHEVSPDDGTIADVLRDAKEILMK--EDGHHGPRGLLIE 242
             A+   G +   +  L     + +  +D     ++    + L K  E+        L+ 
Sbjct: 511 STAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 243 -EITEEVGAVSSGSHR 257
             +  E  A+   +H+
Sbjct: 570 IALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 43/334 (12%), Positives = 97/334 (29%), Gaps = 107/334 (32%)

Query: 67  PEEVAEIGEKLANASPEE----------------IATMRA-RIDAQMNYE-F-------N 101
            +   ++ + L    P +                +    + ++  +M+++ F       N
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           + + + +   +L            Y +          S    L +      +   LK+K 
Sbjct: 194 SPETVLEMLQKLL-----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-------RLEEAVSDLSNAH--EVSPD 212
           Y+ C+ V   V   +AK   A         ++        R ++    LS A    +S D
Sbjct: 243 YENCLLVLLNV--QNAKAWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 213 DGTIADVLRDAKEILMK-----------EDGHHGPRGLLIEEITEEVGAVSSGSHRSSGT 261
             ++     + K +L+K           E     P    +  I E    +  G       
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAES---IRDGLATWDNW 347

Query: 262 EYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS-FQN---FISNANPDSFAA 317
           +++  +K              ++     L  L  +P   R  F     F  +A+      
Sbjct: 348 KHVNCDKL-------------TTIIESSLNVL--EPAEYRKMFDRLSVFPPSAH------ 386

Query: 318 LSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQ 351
                   I       +S++   +   ++  ++ 
Sbjct: 387 --------IPT---ILLSLIWFDVIKSDVMVVVN 409

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 21/133 (15%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM-SCY 156
           + A   K +GN+ Y   +F  A++ Y  A    K+                 LN+  +  
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD--------------ITYLNNRAAAE 48

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
            +  +Y+  I   ++ +    +         +++  IG     + DL    E      T 
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 217 ---ADVLRDAKEI 226
              AD+L   +  
Sbjct: 109 HRTADILTKLRNA 121

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYL 157
             A+  + +G E +++  + NA++ Y             +S+              +   
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA------------AALA 184

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           K   + E I   ++ +  D   V+A  R+  A   +     A+  L  A     + 
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
            + L         L+K                 EG+             Y     +   +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE------------YFTKSDWPNAV 159

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           K  +E++    ++ +    R  A   +    EA++D + A E  P+ 
Sbjct: 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 33/121 (27%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-------- 154
            +  K+QGN L+ +G +  A+  Y             +        +    +        
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCY------------DQ------LITAQPQNPVGYSNKA 45

Query: 155 -CYLKTKQYDECIKVGSEVLAYDAKNVKAL------YRRGQAYKDIGRLEEAVSDLSNAH 207
              +K  +Y + I++  + L Y +            YR   A   +G ++  V ++    
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 208 E 208
           E
Sbjct: 106 E 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.0 bits (156), Expect = 6e-11
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 97  NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM 153
           +     A  LK +GN  ++   F+ A++ Y  A     N    +S+              
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS------------ 66

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +CY+ T   ++ I+  ++ L     + KAL RR  A + +G   +A+ DL +   ++ D
Sbjct: 67  ACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKT 159
           NAA  L   G   + +    +A       ++++  +H +         S   +       
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLL---QESIN-LHPT-------PNSYIFLALTLADK 289

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +   E  K   + +  + +     Y RGQ Y  +   + A  D   A  ++P++
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTL----LLACSLNSMSCYLKTKQY 162
              L   G F  A+++Y +A   ++  + IH   G  +    +LA   +     L  +++
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVL 220
           +  IK+ ++    D ++ +A     Q    + +++EA+    ++  ++        A   
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 221 RDAKEI 226
            +A +I
Sbjct: 505 AEAAKI 510

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 18/175 (10%)

Query: 69  EVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ---- 124
            V  +      AS E +        A      N +K   +    L S    ++       
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 125 -----------KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173
                       Y  A   L                + +      T  Y   +   +   
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKE 225
                   AL   G  +     L +A   L  +  + P   +   +A  L D + 
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.9 bits (122), Expect = 7e-07
 Identities = 11/107 (10%), Positives = 24/107 (22%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G   +    + NA + +  A          +                    K  ++ E  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA------------CLLYKQGKFTESE 364

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              +E         +      +   D G  + A+     A  +    
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +   K ++E IK     +  D             Y   G LE+ +   + A E+ PD 
Sbjct: 34  HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-LACSLNSMSCYLKTKQYDE 164
           +     + Y++GR   A   +    + L          ++ LA      + Y   +Q+ +
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFF----RFLCIYDFYNVDYIMGLA------AIYQIKEQFQQ 88

Query: 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              + +   A    +   ++  GQ    +    +A        + S D+
Sbjct: 89  AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMS-CY 156
             A  LK +GN+ +   ++ +A++ Y   L  K++                  +++S CY
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------------PVFYSNLSACY 49

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 204
           +      + +++ ++ L       K L RR  A + +G+  +A+ DLS
Sbjct: 50  VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 29/197 (14%), Positives = 51/197 (25%), Gaps = 25/197 (12%)

Query: 24  DDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA--- 80
                +          +  A  +  N   ++L      L    PE   +  E    A   
Sbjct: 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218

Query: 81  SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIH 137
             E++         +       A  L+  G   + +     A +    A      +    
Sbjct: 219 FEEQLDKNNEDEKLKEKL----AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--- 271

Query: 138 SSEGRTLLLACSLNSM-SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196
                      S   M           E      + L  D+ N    Y RGQ    +   
Sbjct: 272 -----------SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320

Query: 197 EEAVSDLSNAHEVSPDD 213
           ++A  D   A E+ P++
Sbjct: 321 DQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
              L  +  F  AL++Y LA   +  L GI+      +  A  L         + + E  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT---VENFIEAT 435

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  +    D ++ +A     Q       ++EA++    + +++   
Sbjct: 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G   +    +  A + +  AK+        +                    +  ++D+C 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA------------CLAYRENKFDDCE 358

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            + SE      +  +      +   D    ++A+     A E+    
Sbjct: 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            + + K+YD+ IK  +  L      V         Y  +G L++ V   + A E+ PD 
Sbjct: 15  QFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 23/122 (18%), Positives = 42/122 (34%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
           G   +  G +  A + +L A + ++ I +            N      K K+Y E +   
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229
            + L    +N       G  +  +G  E AV     A  +  DD     +L    E+ + 
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 230 ED 231
           + 
Sbjct: 320 DS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 167
            G+    E     A+  Y  A + ++G H            +  +   Y  T       +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------MLYIGLEYGLTNNSKLAER 180

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
             S+ L+   ++   ++  G      G  + A     +A E     G
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 10/115 (8%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
               ++       Y    F    +   +  +       +    + +          ++  
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGT-------LVELN 70

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDG 214
           + +E   +  +++     N  + +  G  Y  +G   E A   LS A  +    G
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 15/93 (16%)

Query: 110 GNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G+      +++ AL  +  A          +S+ G              +     ++  +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY------------IHSLMGNFENAV 290

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199
                 L     +  ++   G   +      EA
Sbjct: 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLLACSLNSM-SC 155
              + ++ +     G+   A+  +         +  +    + +  + + +     +   
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           Y K + YD+      E+L     NV  L    +     G+ ++A+       ++  D+
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157
           N    L+         G+  +AL+ Y   L  + +    +   G              YL
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY-----------YL 134

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---G 214
             +Q  + ++   + L+   K   A YR G +     R E+A + L       P      
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194

Query: 215 TIADVLRDAKEI 226
           T+  +LR  KE+
Sbjct: 195 TLDKILRIEKEV 206

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------S 154
           +  + L   G   Y  G++ +A + +               + L +    ++       +
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIF---------------QALCMLDHYDARYFLGLGA 60

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           C      Y++ ++  S     D    +  +   + +  +G L+ A S   +A  ++    
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 215 TIADVLRDAKEIL 227
               +   A  +L
Sbjct: 121 AHEALAARAGAML 133

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 14/124 (11%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159
           A +           G +  A      A      +    + +       C           
Sbjct: 11  AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70

Query: 160 KQYDECIKVGSEVLAYDAKN-----------VKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
           + +DE +    + L Y  +            + A+Y R  A   +GR  EA+ +     E
Sbjct: 71  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130

Query: 209 VSPD 212
           +  +
Sbjct: 131 MIEE 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 108 KQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164
           +  +  Y  G F  A +        + +  G+                 S + + ++ D 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLS------------SIHFQCRRLDR 51

Query: 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +  +  +    +A    G  YK+ G+L+EA+    +A  + PD 
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
              L + G    A+Q Y+ A     +L  + S  G            +      + +E  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG------------NLLKALGRLEEAK 155

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               + +        A    G  +   G +  A+     A  + P+ 
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G    ++G    A+  +  A     N    + + G  L             + + +D  +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------------EARIFDRAV 223

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                 L+    +          Y + G ++ A+     A E+ P  
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 19/124 (15%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
               Y +G    A+  Y  A   + +    + +    L             +     E  
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK------------EKGSVAEAE 291

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRD 222
              +  L     +  +L       ++ G +EEAV     A EV P+       +A VL+ 
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

Query: 223 AKEI 226
             ++
Sbjct: 352 QGKL 355

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           GN L     F  A+  YL A     N   +H +                Y +    D  I
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA------------CVYYEQGLIDLAI 257

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                 +        A      A K+ G + EA    + A  + P  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 168
            N L  +G  + A   Y      L+ +  +       A SLN++ +   +    +E +++
Sbjct: 278 ANALKEKGSVAEAEDCY---NTALR-LCPT------HADSLNNLANIKREQGNIEEAVRL 327

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAK 224
             + L    +   A        +  G+L+EA+     A  +SP        + + L++ +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Query: 225 E 225
           +
Sbjct: 388 D 388

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 168
           G   +++     A+  +  A   L  +  ++      A +  ++   Y K K YD  I  
Sbjct: 482 GVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223
            ++ L     +          Y        A++ L  +  +SP++   +D+L+ A
Sbjct: 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 9e-06
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 15/140 (10%)

Query: 77  LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG- 135
           L  A  E    ++         +    + L        S        + YL +   L+  
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304

Query: 136 --IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193
             +   +  TL +              ++ + + + +++L  D  N+        +  + 
Sbjct: 305 SDLLLCKADTLFVRS------------RFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352

Query: 194 GRLEEAVSDLSNAHEVSPDD 213
           G   +     ++  +  P+ 
Sbjct: 353 GEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 13/114 (11%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
            ++ +L  + + L+   RF + L       + +   +        L      ++   ++ 
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILE-IDPYN--------LDVYPLHLASLHESG 353

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           + ++   + ++++    +        G  Y  + ++ EA    S +  + P  G
Sbjct: 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG 407

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +    ++D+ I   +                G  +  +G +  A   L +++ +   D
Sbjct: 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 36/236 (15%), Positives = 61/236 (25%), Gaps = 35/236 (14%)

Query: 10  MIRLAQEQMNRMS--PDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPP 67
           M+    +  +RM   P +         A             N     L            
Sbjct: 1   MVVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLA 60

Query: 68  EEVAEIGEKLANASPEEIATMRA-------RIDAQMNYEFNAA-----KMLKKQGNE--L 113
              +  G  L   + +   ++         R DA M  ++  A     K+L   GN    
Sbjct: 61  NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDA 120

Query: 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173
           +   +       Y  AK  L      +      AC   +  C +K   +   + +  E  
Sbjct: 121 FWLAQVYCCTGDYARAKCLL---TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177

Query: 174 AY------------DAKNVK----ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +                +K      Y RGQ Y ++   + A      A  V    
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 167
             +    EG    A+  Y  A +  QG H               +   +++        +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLP----------YLFLGMQHMQLGNILLANE 462

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
                 A    +   L   G    +   ++ A++   NA  +     + 
Sbjct: 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G  L  +G+ S A+Q+Y  A         ++   G            S +     +   I
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG------------SYFYNKGNFPLAI 128

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +   + +     + K  Y  GQAY       +A S      E+ P+ 
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 18/117 (15%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159
             +  +  + L+    ++ A++ +      K N   I++                CY + 
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYN------------RRAVCYYEL 50

Query: 160 KQYDECIKVGS---EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +YD   K        +             G+     G+   A+     A +     
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 63  THTPPEEVAEIGEKLANASPEEIATMRAR--IDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           ++T   +   +   L     +E+   R    + ++   +   A++L ++G    S G  +
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 121 NALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177
            A   +  A   + ++  + +  G  L             +   +D   +    VL  D 
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLT------------QAGNFDAAYEAFDSVLELDP 108

Query: 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               A   RG A    GR + A  DL   ++  P+D
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 110 GNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSL---NSMSCYLKTKQYD 163
                +E   + AL      LL++   + + S   +  +    L   +    +    +Y 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           EC  +    L  +  + +     G  Y      + A ++L  A E+ PDD
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 21/130 (16%)

Query: 92  IDAQMNYEFNA------AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGR 142
           +    +Y F A       +   ++G  +      + A   +          +    S G 
Sbjct: 4   LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL 63

Query: 143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202
           T              + ++    I   +     D K++        ++ +      A++ 
Sbjct: 64  TQA------------ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111

Query: 203 LSNAHEVSPD 212
           L       P 
Sbjct: 112 LRAWLLSQPQ 121

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 15/100 (15%)

Query: 117 GRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173
           G        Y     N          EG ++L            K     E       V 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSML------------KLANLAEAALAFEAVC 48

Query: 174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               +  +A    G    +  +   A+  L++A  + P D
Sbjct: 49  QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
            +     G  +                    +  GR                 +++ E  
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR------------VRWTQQRHAEAA 77

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  +      ++       G A +D G+ E A +  + AH++ P++
Sbjct: 78  VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 16/125 (12%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 168
           G  LY + R+  A Q+ L A ++      S            ++    L+ K+  +  + 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSR--------VFENLGLVSLQMKKPAQAKEY 163

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-------GTIADVLR 221
             + L  +                      A        +    +         +A V  
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223

Query: 222 DAKEI 226
           D    
Sbjct: 224 DRDTA 228

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
            +LK       + +  E++  D   V   Y  G+ Y+ + R ++A+   +   EV+ ++G
Sbjct: 16  EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75

Query: 215 TI--ADVLRDAKEILMKEDGHH 234
           T      L+DAK      + HH
Sbjct: 76  TQKDLSELQDAKLKAEGLEHHH 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 168
           +G     +  +  AL  +   +     I  + G              Y   K   E  K 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQDPHSRICFNIG------------CMYTILKNMTEAEKA 59

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217
            +  +  D     A ++RG  Y    + + A+ DL  A      +  I 
Sbjct: 60  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+       + +  ++  +  L  AH ++P  
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 11/116 (9%), Positives = 26/116 (22%), Gaps = 15/116 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYL 157
                +        +       L     A           +S                  
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD------------GGKQ 151

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 152 ALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 7/54 (12%), Positives = 20/54 (37%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +      + V A+       + +  ++  +  L  AH ++P+ 
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 7/59 (11%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+       + +  ++  +  L  AH ++P+ 
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 21/59 (35%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P+ 
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 8/63 (12%), Positives = 18/63 (28%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
                +     + V  +      + V A+   G     +  +   +S    A     +D 
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480

Query: 215 TIA 217
            +A
Sbjct: 481 LVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+       + +  ++  +  L  AH ++P  
Sbjct: 251 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 18/120 (15%)

Query: 94  AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM 153
              +++++ A+ L  +     +       LQ   L    L  I    G T + A      
Sbjct: 4   HHHHHQWSGARAL--EALLTVAGELRGPPLQ---LDTGQLLKIAKRGGVTAVEA------ 52

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                   +   +      L    + V A+       + +  ++  +  L  AH ++P  
Sbjct: 53  -----VHAWRNALT--GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 9/121 (7%)

Query: 93  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 152
             Q  +E  A +    +  E  ++   S + + Y    +N                +   
Sbjct: 21  KMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG---------AFEE 71

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
               LK       I      +  D  + +A    G    +    + A+  L    E+ P+
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 213 D 213
           +
Sbjct: 132 N 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 15/143 (10%)

Query: 73  IGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLA 129
           I E     +   ++             F       ++G +   EG     +      +L 
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 130 KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189
                      G T              + +     I      L     N+KAL     +
Sbjct: 95  DPGDAEAWQFLGITQA------------ENENEQAAIVALQRCLELQPNNLKALMALAVS 142

Query: 190 YKDIGRLEEAVSDLSNAHEVSPD 212
           Y +    ++A   L N  + +P 
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPK 165

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 7/181 (3%)

Query: 39  LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMR---ARIDAQ 95
           L  I   +   ++   +              VAE+  +++ +      T     A I   
Sbjct: 54  LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113

Query: 96  MNYEFNAAKMLKKQGNELYSEGRFSNAL---QKYLLAKKNLQGIHSSEGRTLLLACSLNS 152
                +AA     QG+ L         L    +  LA+K L+ +   +    L   +   
Sbjct: 114 DQ-NPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +S     ++  +   +  E+    +  +  L  +   +   GR E A   L  A +    
Sbjct: 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

Query: 213 D 213
            
Sbjct: 233 H 233

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           L       Y  G + +A   +    + L  +   + R  L   +     C     QYD  
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVF----QALCVLDHYDSRFFLGLGA-----CRQAMGQYDLA 74

Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
           I   S     D    +  +   +     G L EA S L  A E+  +     ++      
Sbjct: 75  IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 226 IL 227
           +L
Sbjct: 135 ML 136

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 6e-06
 Identities = 13/122 (10%), Positives = 33/122 (27%), Gaps = 15/122 (12%)

Query: 97  NYEFNA------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 150
           +Y F A       +   ++G  +      + A   +    +  +     E    L     
Sbjct: 5   DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSL----- 57

Query: 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
                  + ++    I   +     D K++        ++ +      A++ L       
Sbjct: 58  --GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

Query: 211 PD 212
           P 
Sbjct: 116 PQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 11/59 (18%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             LK     E       V   + +  +A    G    +  +   A+  L++A  + P D
Sbjct: 26  SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.4 bits (106), Expect = 7e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                  Y E I +  + +  D +  K    +G+A  ++ R EEAV   +    V  D+
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 42.8 bits (102), Expect = 3e-05
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 17/110 (15%)

Query: 109 QGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           +G   Y  G ++ ++  +  A             +G+ L               ++Y+E 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY------------NLERYEEA 59

Query: 166 IKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +   + V+    D  N      +  A + I   E          ++    
Sbjct: 60  VDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 8/63 (12%), Positives = 20/63 (31%)

Query: 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
           ++       +     + V  +        V A+       + +  ++  +  L  AH + 
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

Query: 211 PDD 213
           PD 
Sbjct: 257 PDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.1 bits (114), Expect = 8e-06
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 8/63 (12%), Positives = 22/63 (34%)

Query: 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
           +++      +     + V  +        V A+       + +  ++  +  L  AH ++
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 211 PDD 213
           PD 
Sbjct: 664 PDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 24/203 (11%), Positives = 52/203 (25%), Gaps = 23/203 (11%)

Query: 14  AQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEI 73
               +   + +D   + +Q      L  + T+        +L+    QL      ++A+ 
Sbjct: 111 IITALPEATHEDIVGVGKQWSGARALEALLTD------AGELRGPPLQLDTGQLVKIAKR 164

Query: 74  GEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---K 130
           G   A  +        A   A +N        +        +       L     A    
Sbjct: 165 GGVTAMEAVHASR--NALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 222

Query: 131 KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190
                  +S                    +     + V  +        V A+       
Sbjct: 223 PAQVVAIASHDGG------------KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGK 270

Query: 191 KDIGRLEEAVSDLSNAHEVSPDD 213
           + +  ++  +  L  AH ++PD 
Sbjct: 271 QALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               +     + V  +        V A+       + +  ++  +  L  AH ++PD 
Sbjct: 304 KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 7/58 (12%), Positives = 19/58 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               +     + V  +        V A+   G   + +  ++  +  L  AH ++ + 
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 10/113 (8%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           +    +   G    +       L     A           G T     ++ S       +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAH----------GLTPDQVVAIASNGGKQALE 409

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                + V  +        V A+       + +  ++  +  L   H ++P  
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +        V A+       + +  ++  +  L  AH ++P  
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 9/59 (15%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                      + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 564

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +        V A+   G   + +  ++  +  L  AH ++   
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 20/155 (12%), Positives = 37/155 (23%), Gaps = 15/155 (9%)

Query: 97  NYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSM 153
                      ++G     EG   NA+  +   +             G T          
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-------- 109

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               + +Q    I      L     N  AL     ++ +     +A   L +    +P  
Sbjct: 110 ----ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

Query: 214 GTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV 248
             +     +                LL + +  EV
Sbjct: 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 200

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 6/132 (4%)

Query: 83  EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEG 141
              + + + +D     +    +M K+          + +            +G     E 
Sbjct: 5   RAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSAT-----YDKGYQFEEEN 59

Query: 142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201
                          L+       + +    +  D K+++A    G    +  +   A+S
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119

Query: 202 DLSNAHEVSPDD 213
            L    E+ PD+
Sbjct: 120 ALRRCLELKPDN 131

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKVGSEVLAY 175
           G  + A+  Y  A   +      +      A     + S +    +Y +   V +  +  
Sbjct: 4   GLEAQAVPYYEKA---IASGLQGKDL----AECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218
              +            ++GR E+ V  L      + DD TI  
Sbjct: 57  FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
            N L S      AL  Y  A     +    +   G              Y+  + Y E  
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV------------YVVKEMYKEAK 111

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  + L    +N    Y  G     + + + A+  L  A E++ +D
Sbjct: 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G  L    +   AL     A    +N        G             C       DE +
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG------------MCLANEGMLDEAL 179

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              + V   D  +  A Y  G  Y      E+A+  L  A ++ PD 
Sbjct: 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 6/58 (10%), Positives = 20/58 (34%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +   Y++  +  ++ +  + ++             +  LE A++    A E+    
Sbjct: 33  GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 19/59 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           Y + +Q+D  +      L +D     A    G+  +  G    A     +    +   G
Sbjct: 29  YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +LA    N+   +  G+ Y +  + + A+  L  A +  P 
Sbjct: 10  AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 10/106 (9%)

Query: 110 GNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 167
           G  L     R + ++  +  A  +                +  +   C  K  Q+     
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYI--------ANLNKGICSAKQGQFGLAEA 134

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                LA   +   A     +     G+L +A              
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           Y++ + Y +      + L  D KN  A   R + Y+ +   ++A      A  + PD  
Sbjct: 18  YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G      GR+S A+               +    G   +            KT   D   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV------------KTGAVDRGT 62

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           ++    LA    NVK     G  Y  + + + AV  L    E +P +
Sbjct: 63  ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G      G      +    +     +   + +  G T +            + ++YD  +
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV------------QVQKYDLAV 96

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  +V   +  N    +R G A  ++GR +EA+     A  + P++
Sbjct: 97  PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G       ++  A+   +           +    G  L                ++DE I
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD------------NLGRFDEAI 130

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                 L       K       +Y+ +GR EEA+     A+E+    
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 24/154 (15%)

Query: 93  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ---KYLLAKKNLQGIHSSEGRTLLLACS 149
           +        A+  L        +      A++        K  L          L     
Sbjct: 173 EFTSGLA-IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL-------ALKL----- 219

Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
                   + ++  E  K+  E L         L    + Y+     ++A+  L  A E 
Sbjct: 220 ---HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276

Query: 210 SPDDGT----IADVLRDAKEILMKEDGHHGPRGL 239
            P++      I    R AK   +     +G  G 
Sbjct: 277 IPNNAYLHCQIGCCYR-AKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
             A M        + +G+   AL+    A++ +Q  H+ +     L    N    Y    
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 161 QYDECIKVGSEVL--------AYDAKNVKALYRRGQAYKDIG--RLEEAVSDLSNAHEVS 210
           +  +      +V          Y  ++ +     G      G  + E A      A E  
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 211 PDD 213
           P +
Sbjct: 169 PKN 171

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
            + L  +G+   AL  Y  A + +    +            N  +   + +     ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR-ISPTFA--------DAYSNMGNTLKEMQDVQGALQCY 100

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +  +  +     A       +KD G + EA++    A ++ PD
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
            N    +G    A++ Y  A +      +            N  S   +  +  E +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHY 66

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKE 225
            E +        A    G   K++  ++ A+   + A +++P        +A + +D+  
Sbjct: 67  KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126

Query: 226 I 226
           I
Sbjct: 127 I 127

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
                  G  + AL+             G +       + A    +          ++ +
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQAL 104

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            V  +    + +      +RG  Y  +G  ++A + L  A  +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +YD  + +    L  + ++ +ALY   +    +G +  A+ +       +P  
Sbjct: 15  LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 10/113 (8%)

Query: 95  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM- 153
              Y     + L            +  AL     A +    +         +A SL ++ 
Sbjct: 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE----LAMDIQNDRFIAISLLNIA 229

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVS 201
           + Y ++      ++   +      +       K L+         G+ ++A  
Sbjct: 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 91  RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 150
           +  +  +   +    L  +G  L + G     +  +  A +       +       +   
Sbjct: 36  QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL------SAIY 89

Query: 151 NSM-SCYLKTKQYDECIKVGSEVLA-----YDAKNV-KALYRRGQAYKDIGRLEEAVS 201
           + + + Y     Y++ ++     L       D     K+    G   K +GR +EA  
Sbjct: 90  SQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           GN  Y +G +  A++ Y  A            + G                K   YDE I
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY------------KQGDYDEAI 55

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +   + L  D ++ +A Y  G AY   G  +EA+     A E+ P 
Sbjct: 56  EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           Y K   YDE I+   + L  D ++ +A Y  G AY   G  +EA+     A E+ P  
Sbjct: 11  YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 20/176 (11%)

Query: 55  LKCAAEQLTHTPPEEVAEIGEKLANA-----SPEEIATM---RARIDAQMNYEFNAAKML 106
           L+ A     +      A+  E+            E        + +  +      AA  L
Sbjct: 60  LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119

Query: 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDEC 165
            +   +L      S A+  Y  A    +     E R    A  +       ++ +++DE 
Sbjct: 120 DR-AGKLMEPLDLSKAVHLYQQAAAVFEN----EERLRQAAELIGKASRLLVRQQKFDEA 174

Query: 166 IKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215
                +  +   +        K    +            A   +  ++ +    G+
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGS 230

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 98  YEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMS 154
           +E ++ +   ++  ++  +      LQ+    L + +        +G+ L          
Sbjct: 65  FETHSVEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL---------- 112

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +      E   + S+ +  + + V+A  + G+ Y   G +  A +  S A     + 
Sbjct: 113 -NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK 170

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 40.7 bits (96), Expect = 9e-04
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 13/106 (12%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQ 161
              L  +G  L   G     +  +  A +       +       +   + + + Y     
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------SAIYSQLGNAYFYLHD 58

Query: 162 YDECIKVGSEVLA-----YDAKNV-KALYRRGQAYKDIGRLEEAVS 201
           Y + ++     L       D     KA    G   K +G  +EA+ 
Sbjct: 59  YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	594
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.6
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.59
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.56
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.56
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.51
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.51
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.5
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.49
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.48
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.47
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.46
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.45
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.44
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.42
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.39
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.39
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.38
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.37
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.37
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.32
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.31
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.3
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.3
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.29
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.29
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.29
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.28
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.26
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.25
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.25
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.24
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.24
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.23
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.21
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.21
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.21
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.2
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.18
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.16
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.16
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.16
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.15
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.13
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.12
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.12
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.1
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.07
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.04
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.03
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.02
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.02
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.02
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.01
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.01
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.99
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.99
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.98
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.98
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.98
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.96
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.95
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.94
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.94
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.93
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.92
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.92
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.92
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.91
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.89
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.88
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.87
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.84
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.84
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.82
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.81
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.81
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.8
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.78
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.77
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.77
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.75
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.75
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.73
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.73
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.72
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.72
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.67
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.67
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.66
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.66
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.65
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.65
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.63
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.63
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.63
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.63
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.62
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.6
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.58
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.56
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.55
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.54
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.51
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.51
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.5
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.49
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.49
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.48
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.47
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.47
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.45
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.43
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.39
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.35
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.34
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.28
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.16
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.13
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.1
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.08
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.01
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.99
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.84
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.74
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.7
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.68
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.65
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.62
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.58
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.57
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.54
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.37
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.27
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.01
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.97
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.95
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.88
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.66
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.63
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.32
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.15
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.67
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.9
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.31
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.41
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	91.95
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	85.78
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	82.74

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=1e-19  Score=163.10  Aligned_cols=117  Identities=19%  Similarity=0.291  Sum_probs=111.7

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP  177 (594)
                      .+|+.++.++++|+.+++.|+|++|+.+|+++|+++|.++.         +|+++|.||+++|+|++|+.+|+++|+++|
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------LYSNRAACLTKLMEFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence            46677899999999999999999999999999999999854         899999999999999999999999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..|+.+
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999888876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.68  E-value=5.5e-19  Score=165.66  Aligned_cols=127  Identities=16%  Similarity=0.225  Sum_probs=114.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceee-----eeecccCceeeeccccchhhhhhcceeeee-
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-----LACSLNSMSCYLKTKQYDECIKVGSEVLAY-  175 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~-----~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-  175 (594)
                      .+..++++|+.+++.|+|++|+.+|+++|+++|.++..+  .+.     ..+|+|+|.|+.++|+|++|+.+|++||++ 
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            467899999999999999999999999999999965422  111     239999999999999999999999999999 


Q ss_pred             ------cccchHHH----HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          176 ------DAKNVKAL----YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       176 ------dP~~~ka~----~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                            +|+++++|    |++|.+|..+|+|++|+.+|++|++++|++..+...+..++..+..+
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence                  99999999    99999999999999999999999999999998888888887777543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.66  E-value=4.9e-18  Score=156.87  Aligned_cols=135  Identities=25%  Similarity=0.341  Sum_probs=116.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc---------cccceeeeeecccCceeeeccccchhhhhhc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---------SEGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~---------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~  169 (594)
                      ..+.+..++.+|+.+++.|+|.+|+.+|.++|.+.+....         .........+|+|+|.||+++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4566889999999999999999999999999998222100         0001122558999999999999999999999


Q ss_pred             ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhccCC
Q 007653          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~-~a~~~l~~a~~~l~~~~~a  233 (594)
                      +++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++. .+...+..+...+.++...
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 8899999999888776543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.61  E-value=2.1e-17  Score=152.12  Aligned_cols=138  Identities=6%  Similarity=-0.038  Sum_probs=125.8

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg  160 (594)
                      ...+++.+...+.......++.+..++.+|.+|++.|+|++|+.+|+++|+++|.++.         +|+++|.||.++|
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~   79 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------AHRFLGLLYELEE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTT
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcC
Confidence            4456777888888888888999999999999999999999999999999999999954         8999999999999


Q ss_pred             cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhh-cccccccCCCCChHHHHHhHHHHHh
Q 007653          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD-LSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~-lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      +|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.. +++|++++|+++.++..+..+....
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887765 5999999999999988887765544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=4e-17  Score=159.03  Aligned_cols=190  Identities=13%  Similarity=0.042  Sum_probs=153.7

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-  116 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~-  116 (594)
                      +...+...++..+.++....++......|............ ....+++.+...+.+.+...++.+..+..+|.++... 
T Consensus         8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~   87 (217)
T 2pl2_A            8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY   87 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence            34445555666777777777777777777766655444221 2233466788888888888999999999999999999 


Q ss_pred             ----------ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHh
Q 007653          117 ----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR  186 (594)
Q Consensus       117 ----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~r  186 (594)
                                |++++|+..|.++++++|.++.         +|+++|.+|..+|+|++|+..|+++++++ +++.+++++
T Consensus        88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l  157 (217)
T 2pl2_A           88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAP---------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL  157 (217)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred             hhhhhhcccccCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence                      9999999999999999999854         89999999999999999999999999999 999999999


Q ss_pred             ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007653          187 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       187 g~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                      |.+|..+|++++|+.+|+++++++|++..++..++.+...+++...+....+
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888776655443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.60  E-value=6.4e-17  Score=150.40  Aligned_cols=116  Identities=11%  Similarity=0.079  Sum_probs=109.5

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhc
Q 007653           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus        90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~  169 (594)
                      ..+...+...++.+..++.+|..+++.|+|++|+.+|++++.++|.++.         +|+++|.||..+|+|++|+.+|
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------YIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHccHHHHHHHH
Confidence            4566667778889999999999999999999999999999999999965         8999999999999999999999


Q ss_pred             ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      +++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+.+
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=5.5e-17  Score=142.98  Aligned_cols=118  Identities=18%  Similarity=0.205  Sum_probs=111.7

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      ..++.++.+|+.+++.|+|++|+.+|+++++++|.++.         +|+++|.||+++|+|++|+.+|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            35778999999999999999999999999999999854         899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhHHHHHh
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDAKEIL  227 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~------P~~~~a~~~l~~a~~~l  227 (594)
                      .+|+++|.+|..+|++++|+.+|+++++++      |++..++..+..+..++
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999      99999999999887664

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.58  E-value=8.6e-17  Score=143.93  Aligned_cols=114  Identities=21%  Similarity=0.274  Sum_probs=101.8

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      .+.+.+++++|+.+++.|+|++|+.+|+++|+++|.++         .+|+|+|.||+++|+|++|+.+|+++|+++|++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            45677899999999999999999999999999999984         489999999999999999999999999999976


Q ss_pred             -------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          180 -------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       180 -------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                             +++|+++|.+|..+|+|++|+.+|++++.++|+ +++...+..+
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence                   468999999999999999999999999999885 4454444443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=2e-16  Score=145.45  Aligned_cols=131  Identities=17%  Similarity=0.112  Sum_probs=117.7

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      +...+...++.+..++.+|..++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|++|+.+|++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~   80 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------FFLGLGACRQAMGQYDLAIHSYSY   80 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34445556777889999999999999999999999999999999854         899999999999999999999999


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      ++.++|+++.+++++|.+|..+|++++|+.+|+++++++|+++........+...+....
T Consensus        81 al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  140 (148)
T 2vgx_A           81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK  140 (148)
T ss_dssp             HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred             HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888777777766665433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.56  E-value=2.1e-16  Score=181.81  Aligned_cols=155  Identities=14%  Similarity=0.091  Sum_probs=142.7

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      .++++|...|++.++..++.+.++.++|+++.+.|+|++|+.+|+++|+++|.+..         +|+|+|.+|..+|+|
T Consensus        23 G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~---------a~~nLg~~l~~~g~~   93 (723)
T 4gyw_A           23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD---------AYSNMGNTLKEMQDV   93 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence            35667888888888889999999999999999999999999999999999999854         899999999999999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~ie  242 (594)
                      ++|+++|++||+++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..++.+...+++..++.+.+++.++
T Consensus        94 ~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A           94 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887777666664


Q ss_pred             HHHH
Q 007653          243 EITE  246 (594)
Q Consensus       243 e~~e  246 (594)
                      -..+
T Consensus       174 l~~~  177 (723)
T 4gyw_A          174 IVAD  177 (723)
T ss_dssp             HHHH
T ss_pred             hChh
Confidence            4333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.56  E-value=2.8e-16  Score=145.31  Aligned_cols=122  Identities=20%  Similarity=0.190  Sum_probs=110.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..++.+|+.++..|+|++|+.+|.++++++|.++         .+|+++|.||+++|+|++|+.+|+++|+++|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------IYLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            456688999999999999999999999999999999985         48999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh--HHHHHhHHHHHhhh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKEILMK  229 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~--a~~~l~~a~~~l~~  229 (594)
                      ++.+|+++|.+|..+|+|++|+.+|+++++++|++..  +...+..++.++.+
T Consensus        78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE  130 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998  44555555555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.55  E-value=3.2e-16  Score=141.94  Aligned_cols=129  Identities=13%  Similarity=0.120  Sum_probs=116.7

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcce
Q 007653           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      +...+...++....++.+|..++..|+|++|+.+|.+++.++|.++.         +|+++|.||..+|+|++|+.+|++
T Consensus         7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~   77 (142)
T 2xcb_A            7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------YFLGLGACRQSLGLYEQALQSYSY   77 (142)
T ss_dssp             --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHHhhHHHHHHHHHH
Confidence            44555667777889999999999999999999999999999999854         899999999999999999999999


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      ++.++|+++.+++++|.+|..+|++++|+.+|++++.++|+++........+...+..
T Consensus        78 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           78 GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888777777666643

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.51  E-value=9.2e-16  Score=167.01  Aligned_cols=140  Identities=24%  Similarity=0.389  Sum_probs=119.1

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeecccCceeeeccccchhh
Q 007653           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        92 ~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      +.......+..+..++++|+.+++.|+|.+|+.+|.++|+++|.++.      .+...+...+|+|+|.||+++++|++|
T Consensus       257 ~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  336 (457)
T 1kt0_A          257 WEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA  336 (457)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            34444456778899999999999999999999999999999998731      001112235899999999999999999


Q ss_pred             hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +.+|+++|+++|+++++||++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++++.
T Consensus       337 ~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          337 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998887765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.51  E-value=5.3e-16  Score=161.98  Aligned_cols=155  Identities=21%  Similarity=0.328  Sum_probs=129.8

Q ss_pred             HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc------ccceeeeeecccCceeeeccccc
Q 007653           89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        89 ~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      ...+.......+..+..++.+|+.+++.|+|++|+.+|.+++.+.|.+...      +...+...+|+|+|.||+++|+|
T Consensus       133 ~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  212 (336)
T 1p5q_A          133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF  212 (336)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            333444455577788999999999999999999999999999999987310      01111235899999999999999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC-CCCccchH
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH-HGPRGLLI  241 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a-~~~~~~~i  241 (594)
                      ++|+.+|+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++++..+ ...+...+
T Consensus       213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998887654 22334444


Q ss_pred             HH
Q 007653          242 EE  243 (594)
Q Consensus       242 ee  243 (594)
                      ..
T Consensus       293 ~~  294 (336)
T 1p5q_A          293 ER  294 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.50  E-value=1.3e-15  Score=145.17  Aligned_cols=137  Identities=29%  Similarity=0.432  Sum_probs=120.1

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc-------ceeeeeecccCceeeeccccchhhhhhc
Q 007653           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLLLACSLNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus        97 ~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~-------~~l~~~~~~N~a~~~~klg~y~eAi~~~  169 (594)
                      ...+..+..++.+|+.++..|+|.+|+.+|.+++.+.|..+....       ..+...+|+++|.||+++++|++|+.+|
T Consensus        32 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  111 (198)
T 2fbn_A           32 EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHA  111 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            345667889999999999999999999999999999888752000       0001258999999999999999999999


Q ss_pred             ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      +++++++|+++.+++++|.+|..+|+|++|+.+|++++.++|++..++..++.+...+++....
T Consensus       112 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~  175 (198)
T 2fbn_A          112 SKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK  175 (198)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988776544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.49  E-value=2.2e-15  Score=145.93  Aligned_cols=190  Identities=12%  Similarity=0.114  Sum_probs=147.7

Q ss_pred             Chh-HHHHhhhhhccCCCchhhhhhhhhcCCCh-hHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccc
Q 007653           36 NPE-LMRIATENMKNMRPEDLKCAAEQLTHTPP-EEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNE  112 (594)
Q Consensus        36 ~p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~p-ee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~  112 (594)
                      ||+ +...+...+...+.++....++......| ......... .......+++.+...+...+...+..+..+..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            344 44556666666666666665555544333 222222222 111123345678888888888899999999999999


Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccch
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAY  190 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al  190 (594)
                      ++..|+|++|+..|++++++.|.++.  .......+|+++|.++..+|+|++|+..|+++|+++|+  ++.+++++|.+|
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            99999999999999999999998752  00011146999999999999999999999999999999  999999999999


Q ss_pred             hhhhhH---------------------------HHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          191 KDIGRL---------------------------EEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       191 ~~lg~~---------------------------~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ...|+.                           ++|+.+|+++++++|++..+...+..++..+
T Consensus       164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            999999                           9999999999999999999998888876543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.48  E-value=1.5e-15  Score=174.75  Aligned_cols=134  Identities=13%  Similarity=0.089  Sum_probs=124.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .++.+++|.++|+++.+.|+|++|+.+|+++|+++|.+..         +|+|+|.+|.++|+|++|+.+|++||+++|+
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~   75 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHYKEAIRISPT   75 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            5677899999999999999999999999999999999854         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      ++.+|+++|.+|..+|++++|+++|++|++++|++..++..++.+...+++.+++...+++.+
T Consensus        76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888776655544444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.47  E-value=2.8e-15  Score=156.76  Aligned_cols=132  Identities=33%  Similarity=0.472  Sum_probs=97.8

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------ccceeeeeecccCceeeeccccchhhhhhc
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l~~~~~~N~a~~~~klg~y~eAi~~~  169 (594)
                      ..++.+..++.+|+.+++.|+|.+|+.+|.+++.+.|.+...        ....+...+|+|+|.||+++++|++|+.+|
T Consensus       174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356678899999999999999999999999999998876310        000111138999999999999999999999


Q ss_pred             ceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       170 ~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +++|+++|+++++||++|.+|..+|+|++|+.+|+++++++|++..++..+..+......
T Consensus       254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888655443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.46  E-value=1.8e-15  Score=147.24  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=134.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc----
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----  159 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl----  159 (594)
                      +++.+...+.+.+...++.+..+..+|.+++..|+|++|+..|+++++++|.++.         +|+++|.+|...    
T Consensus        20 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~~~~~   90 (217)
T 2pl2_A           20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---------GYMVLSEAYVALYRQA   90 (217)
T ss_dssp             CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhhhhh
Confidence            3556777778888888889999999999999999999999999999999999854         899999999999    


Q ss_pred             -------ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          160 -------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       160 -------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                             |++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|+++++++ +++.++..++.+...+++...
T Consensus        91 ~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~  169 (217)
T 2pl2_A           91 EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE  169 (217)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred             hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence                   999999999999999999999999999999999999999999999999999 999999999999999887766


Q ss_pred             CCCCccchH
Q 007653          233 HHGPRGLLI  241 (594)
Q Consensus       233 a~~~~~~~i  241 (594)
                      +...++..+
T Consensus       170 A~~~~~~al  178 (217)
T 2pl2_A          170 ALAQYAKAL  178 (217)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            544444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.46  E-value=3.2e-15  Score=159.55  Aligned_cols=156  Identities=7%  Similarity=-0.089  Sum_probs=135.0

Q ss_pred             CCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-chhHHHHHHHhhhcccccccccc
Q 007653           64 HTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSSEG  141 (594)
Q Consensus        64 ~~~pee~~~~~~~~~~~-~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~-y~eAi~~Y~kAL~l~p~~~~~e~  141 (594)
                      ...|+............ ....+..+...+.+.+..+++.+.+|..+|.++...|+ |++|+.+|.++|.++|.+..   
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~---  167 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---  167 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---
Confidence            34555555443332111 12235567888888888999999999999999999997 99999999999999999854   


Q ss_pred             ceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       142 ~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                            +|+++|.||..+|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++
T Consensus       168 ------a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg  241 (382)
T 2h6f_A          168 ------VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY  241 (382)
T ss_dssp             ------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ------HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                  89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 007653          222 DAKEILM  228 (594)
Q Consensus       222 ~a~~~l~  228 (594)
                      .+...+.
T Consensus       242 ~~l~~l~  248 (382)
T 2h6f_A          242 FVISNTT  248 (382)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            9988743

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.45  E-value=3.9e-15  Score=136.84  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=105.3

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (594)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg  187 (594)
                      .+|..+..+|++++|+..|.+++...|..+.         .++++|.||++.|+|++|+.+|+++|+++|+++.+|+++|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   72 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLG   72 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHT---------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4789999999999999999999999998854         7899999999999999999999999999999999999999


Q ss_pred             cchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       188 ~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      .+|..+|++++|+.+|+++++++|++..++..++.+....++...
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           73 LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            999999999999999999999999999999999999888876543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.44  E-value=4.1e-15  Score=131.74  Aligned_cols=122  Identities=26%  Similarity=0.344  Sum_probs=112.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+..++.+|..++..|+|++|+.+|.+++.++|.++         .+|+++|.||+.+|+|++|+.+|+++++++|+
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------VYYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            344578899999999999999999999999999999884         48999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCC-----CChHHHHHhHHHHHhhh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-----DGTIADVLRDAKEILMK  229 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~-----~~~a~~~l~~a~~~l~~  229 (594)
                      ++.+++++|.+|..+|++++|+.+|++++.++|+     +..+...+..++.+...
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998     78888888888776644

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.42  E-value=5.5e-15  Score=157.70  Aligned_cols=139  Identities=9%  Similarity=-0.074  Sum_probs=129.0

Q ss_pred             hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-chhhhhhccee
Q 007653           94 AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEV  172 (594)
Q Consensus        94 a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-y~eAi~~~~~A  172 (594)
                      ..+.+.++.+..+..+|.++...|+|++|+.+|.++|.++|.+.         .+|+++|.+|..+|+ |++|+.+|+++
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~---------~a~~~~g~~l~~~g~d~~eAl~~~~~a  158 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY---------TVWHFRRVLLKSLQKDLHEEMNYITAI  158 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH---------HHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence            34567888899999999999999999999999999999999985         489999999999997 99999999999


Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      |+++|+++.+|++||.+|..+|+|++|+.+|+++++++|++..++..++.+...++++..+...+...|
T Consensus       159 l~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          159 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998877665555555

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.41  E-value=5.5e-15  Score=138.12  Aligned_cols=148  Identities=13%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ++.|...+.+.++..++.+..+..+|.+++..|++++|+..|.+++...|..+.         ++.+++.++...++++.
T Consensus        21 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~   91 (184)
T 3vtx_A           21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---------AYYILGSANFMIDEKQA   91 (184)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------HHHHHHHHHHHcCCHHH
Confidence            444555555555556666666666666666666666666666666666665532         55666666666666666


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      |+..+.+++.++|.+..+++.+|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++.+.+...+...+
T Consensus        92 a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A           92 AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666555544444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.41  E-value=2.3e-14  Score=124.96  Aligned_cols=121  Identities=20%  Similarity=0.271  Sum_probs=113.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+..++.+|..++..|+|++|+.+|.++++..|.+.         .+++++|.||...++|++|+..|+++++++|+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------KLYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            456688999999999999999999999999999998874         48999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      ++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+....+
T Consensus        83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999988876553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.40  E-value=1.5e-14  Score=153.37  Aligned_cols=133  Identities=27%  Similarity=0.482  Sum_probs=115.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------cccceeeeeecccCceeeeccccchhhhhhcce
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      ..+.+..++.+|+.+++.|+|++|+.+|+++|++.+..+.       .........+|+|+|.||+++++|++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            4556788999999999999999999999999994333100       001112255899999999999999999999999


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..+..++..+++++
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.40  E-value=8.3e-15  Score=136.87  Aligned_cols=167  Identities=13%  Similarity=0.059  Sum_probs=139.6

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g  117 (594)
                      ....+.-..+..+.++....+++.....|............ ....+++.+...+.......+..+..+...|..+...+
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID   87 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence            33444444556677888888888777778777665544221 12334556777777777788888999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE  197 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~  197 (594)
                      ++..|+..|.+++.+.|.+..         ++.++|.+|.++|+|++|+..|+++++++|.++.+|+++|.+|..+|+++
T Consensus        88 ~~~~a~~~~~~a~~~~~~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           88 EKQAAIDALQRAIALNTVYAD---------AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence            999999999999999999854         78999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccCCCCC
Q 007653          198 EAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       198 eAi~~lekAl~l~P~~~  214 (594)
                      +|+.+|++|++++|+++
T Consensus       159 ~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          159 EAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHhCCccCH
Confidence            99999999999999763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.39  E-value=2.7e-14  Score=163.09  Aligned_cols=170  Identities=13%  Similarity=-0.013  Sum_probs=138.4

Q ss_pred             hccCCCchhhhhhhhhc--------CCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653           47 MKNMRPEDLKCAAEQLT--------HTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (594)
Q Consensus        47 mk~~~pe~~~~a~e~l~--------~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g  117 (594)
                      +...++++....+++..        ...|+.......+. ......+++.|...+.+.++..++.+..++.+|..++..|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            33444455555454444        44454444333331 1122334567788888888889999999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE  197 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~  197 (594)
                      +|++|+..|+++++++|.++.         +|+|+|.||.++|+|++ +.+|+++|+++|+++.+|+++|.+|..+|+++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~---------~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~  551 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELA---------PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV  551 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999854         89999999999999999 99999999999999999999999999999999


Q ss_pred             HHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          198 EAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       198 eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      +|+.+|+++++++|++..++..++.+...
T Consensus       552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          552 GAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999888887533

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.39  E-value=2.1e-14  Score=138.74  Aligned_cols=117  Identities=13%  Similarity=0.066  Sum_probs=109.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccc----------------Cceeeeccccchhhh
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN----------------SMSCYLKTKQYDECI  166 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N----------------~a~~~~klg~y~eAi  166 (594)
                      ++.+..+|..++..|+|++|+.+|.++++++|.++.         +|++                +|.||.+.|+|++|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---------MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            567889999999999999999999999999998854         6777                999999999999999


Q ss_pred             hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      ..|+++|+++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999998876554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=3.6e-14  Score=120.55  Aligned_cols=115  Identities=23%  Similarity=0.278  Sum_probs=108.1

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+..+..+|..++..|+|++|+.+|.+++...|.++         .++.++|.||...++|++|+..+.++++++|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   73 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   73 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH
Confidence            467899999999999999999999999999999874         38899999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      +++++|.+|..+|++++|+.+|+++++++|++..++..++.+..
T Consensus        74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999888887753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.38  E-value=2.1e-14  Score=127.34  Aligned_cols=102  Identities=8%  Similarity=-0.037  Sum_probs=91.6

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .++.+|..+++.|+|++|+..|+++++++|.++.         +|+++|.||...|++++|+..|+++++++|+++.+++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   89 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   89 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4778899999999999999999999999999854         8999999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      ++|.+|..+|++++|+..|+++++++|++..
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           90 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999998754

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=2.4e-14  Score=156.33  Aligned_cols=181  Identities=12%  Similarity=0.000  Sum_probs=146.5

Q ss_pred             hhhhhccCCC-chhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc----
Q 007653           43 ATENMKNMRP-EDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----  116 (594)
Q Consensus        43 A~e~mk~~~p-e~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~----  116 (594)
                      +.-.....+. ++....+++.....|........... .....+++.|...+.+.+...++ +..+..+|.+++..    
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~  187 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS  187 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence            3333444445 55555555554445554443333211 11223456777888888888888 69999999999999    


Q ss_pred             -----ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc--------ccchhhhhhcceeeeecc---cch
Q 007653          117 -----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDA---KNV  180 (594)
Q Consensus       117 -----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl--------g~y~eAi~~~~~AL~ldP---~~~  180 (594)
                           |+|++|+.+|+++++++|.++.         +|+++|.+|..+        ++|++|+..|+++++++|   .++
T Consensus       188 ~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  258 (474)
T 4abn_A          188 GDEHSRHVMDSVRQAKLAVQMDVLDGR---------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP  258 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence                 9999999999999999999854         899999999999        999999999999999999   999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      .+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++...+
T Consensus       259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888776543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.37  E-value=9.2e-14  Score=134.17  Aligned_cols=149  Identities=11%  Similarity=0.045  Sum_probs=108.0

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR  118 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~  118 (594)
                      ++..+...+...+.++....+++.....|+..........                 .......+....++|.++++.|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~-----------------~~~~~~~~~~~~~lg~~~~~~g~   69 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNV-----------------DKNSEISSKLATELALAYKKNRN   69 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHS-----------------CTTSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhh-----------------cchhhhhHHHHHHHHHHHHHCCC
Confidence            4555666565655665555555555555544433221100                 00011123344559999999999


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh----
Q 007653          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG----  194 (594)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg----  194 (594)
                      |++|+..|+++++++|.++.         +|+++|.||..+|+|++|+.+|+++|+++|+++.+|+++|.+|+..|    
T Consensus        70 ~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPNNVD---------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999854         89999999999999999999999999999999999999888875443    


Q ss_pred             -------------------------------hHHHHhhhcccccccCCCC
Q 007653          195 -------------------------------RLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       195 -------------------------------~~~eAi~~lekAl~l~P~~  213 (594)
                                                     +|++|+.+|++|++++|+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence                                           4667777777777777753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.37  E-value=5.6e-14  Score=121.37  Aligned_cols=123  Identities=25%  Similarity=0.247  Sum_probs=114.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++...|.++         .++.++|.||...++|++|+..|.+++.++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------VYFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            455678999999999999999999999999999998874         38899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      ++.+++.+|.+|..+|++++|+.+|++++.++|++..++..++.+...++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999998877654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=5.1e-14  Score=125.35  Aligned_cols=120  Identities=32%  Similarity=0.489  Sum_probs=109.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+..++.+|..++..|+|.+|+.+|++++++.|..+.      ...+|+++|.||+..++|++|+.+|+++++++|+
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   97 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG   97 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence            4556788999999999999999999999999999887511      1237899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      ++.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+.
T Consensus        98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.35  E-value=8.3e-14  Score=134.81  Aligned_cols=137  Identities=14%  Similarity=0.097  Sum_probs=121.4

Q ss_pred             HHHHHHHhhhhcccccc-hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653           84 EIATMRARIDAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~-~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      ++..+...+...+...+ .....+..+|.+++..|+|++|+.+|.++++++|.+.         .+|+++|.||..+|+|
T Consensus        22 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~l~~~~~~~~~~   92 (228)
T 4i17_A           22 NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA---------NAYIGKSAAYRDMKNN   92 (228)
T ss_dssp             CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH---------HHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH---------HHHHHHHHHHHHcccH
Confidence            34556666666666665 5667888899999999999999999999999999984         4899999999999999


Q ss_pred             hhhhhhcceeeeecccch-------HHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhhh
Q 007653          163 DECIKVGSEVLAYDAKNV-------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMK  229 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~-------ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~~~l~~  229 (594)
                      ++|+..|+++++++|+++       .+|+++|.++..+|++++|+.+|+++++++|+  +..++..++.+....+.
T Consensus        93 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A           93 QEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence            999999999999999998       77999999999999999999999999999999  88999999998776654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.32  E-value=1.2e-13  Score=119.62  Aligned_cols=120  Identities=21%  Similarity=0.302  Sum_probs=110.6

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-  179 (594)
                      +.+..+..+|..++..|+|++|+.+|.+++.+.|.++         .+++++|.+|...|+|++|+..|.+++.++|.+ 
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence            3467899999999999999999999999999998874         488999999999999999999999999999988 


Q ss_pred             ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       180 ------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                            +.+++++|.+|..+|++++|+.+|++++.+.| +..++..+..+...+++.
T Consensus        73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence                  99999999999999999999999999999999 688888888888877654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.32  E-value=7e-14  Score=130.76  Aligned_cols=106  Identities=19%  Similarity=0.111  Sum_probs=95.6

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch----------hhhhhcceeeeecccchHH
Q 007653          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD----------ECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~----------eAi~~~~~AL~ldP~~~ka  182 (594)
                      .-+.++|++|+..|.++++++|.++.         +|+|+|.|+..+++|+          +||..|++||+++|++..+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~ae---------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A   82 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence            44667899999999999999999965         8999999999998865          9999999999999999999


Q ss_pred             HHHhccchhhhh-----------hHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          183 LYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       183 ~~~rg~al~~lg-----------~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ||++|.+|..+|           +|++|+.+|++|++++|++...+..+..+....
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            999999999885           899999999999999999988877777664443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.32  E-value=4.9e-14  Score=153.89  Aligned_cols=170  Identities=11%  Similarity=0.068  Sum_probs=142.4

Q ss_pred             hhcCCChhHHHHHHHH-hhcCChHHH-HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc
Q 007653           61 QLTHTPPEEVAEIGEK-LANASPEEI-ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS  138 (594)
Q Consensus        61 ~l~~~~pee~~~~~~~-~~~~~~~el-~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~  138 (594)
                      .+....|......... .......++ +.|...+.+.++..+..+..+..+|.+++..|+|++|+.+|+++++++|.. .
T Consensus        93 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~  171 (474)
T 4abn_A           93 EVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK-V  171 (474)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCH-H
T ss_pred             HHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCH-H
Confidence            3334444444443333 112233455 678888888888899999999999999999999999999999999998873 3


Q ss_pred             cccceeeeeecccCceeeecc---------ccchhhhhhcceeeeecccchHHHHHhccchhhh--------hhHHHHhh
Q 007653          139 SEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------GRLEEAVS  201 (594)
Q Consensus       139 ~e~~~l~~~~~~N~a~~~~kl---------g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l--------g~~~eAi~  201 (594)
                               +|.++|.+|..+         |+|++|+..|+++++++|+++.+|+++|.+|..+        |+|++|+.
T Consensus       172 ---------~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          172 ---------SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             ---------HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence                     789999999999         9999999999999999999999999999999999        99999999


Q ss_pred             hcccccccCC---CCChHHHHHhHHHHHhhhccCCCCCccch
Q 007653          202 DLSNAHEVSP---DDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (594)
Q Consensus       202 ~lekAl~l~P---~~~~a~~~l~~a~~~l~~~~~a~~~~~~~  240 (594)
                      +|+++++++|   ++..++..++.+...++++..+...+...
T Consensus       243 ~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  284 (474)
T 4abn_A          243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA  284 (474)
T ss_dssp             HHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999   99999999999999988776554444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.31  E-value=3.2e-13  Score=133.76  Aligned_cols=189  Identities=12%  Similarity=0.048  Sum_probs=146.7

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhH---HHHHHHH-hhcCChHHHHHHHHhhhhcccccc---hHHHHHHHhcc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEE---VAEIGEK-LANASPEEIATMRARIDAQMNYEF---NAAKMLKKQGN  111 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee---~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~---~~a~~l~~~Gn  111 (594)
                      +...+...++..+.++....++.+....|..   ....... .......++..+...+...+...+   ....+++.+|.
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~   97 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM   97 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence            6666777788888888888888887665554   3333222 111223345567777777776544   56789999999


Q ss_pred             cccc--------cccchhHHHHHHHhhhccccccccccceeeeeec--------------ccCceeeeccccchhhhhhc
Q 007653          112 ELYS--------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS--------------LNSMSCYLKTKQYDECIKVG  169 (594)
Q Consensus       112 ~~~~--------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~--------------~N~a~~~~klg~y~eAi~~~  169 (594)
                      +++.        .|+|++|+..|+++++..|..+..      ..++              +++|.||++.|+|++|+..|
T Consensus        98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999        999999999999999999987531      1111              78999999999999999999


Q ss_pred             ceeeeeccc---chHHHHHhccchhhh----------hhHHHHhhhcccccccCCCCCh---HHHHHhHHHHHhhhccCC
Q 007653          170 SEVLAYDAK---NVKALYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKEILMKEDGH  233 (594)
Q Consensus       170 ~~AL~ldP~---~~ka~~~rg~al~~l----------g~~~eAi~~lekAl~l~P~~~~---a~~~l~~a~~~l~~~~~a  233 (594)
                      +++++.+|+   .+.+++++|.+|..+          |++++|+..|+++++.+|+++.   +...+..+...+++.++.
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999998   678999999999988          9999999999999999999964   555666666666665443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.31  E-value=1.1e-13  Score=136.18  Aligned_cols=118  Identities=18%  Similarity=0.078  Sum_probs=107.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +..+..+|.++...|+|++|+.+|.+++++.|..+.         +|.++|.+|...|+|++|+..|+++++++|.++.+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~  144 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV  144 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHH
Confidence            566899999999999999999999999999998854         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      ++++|..++..+++++|+.+|+++++++|++..++..++.+...+++
T Consensus       145 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          145 FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999444444599999999999999999999999999999888866

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=4.1e-13  Score=140.09  Aligned_cols=177  Identities=14%  Similarity=0.011  Sum_probs=103.7

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHH
Q 007653           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK  125 (594)
Q Consensus        47 mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~  125 (594)
                      ....+.++....++......|.......... ......+++.+...+.+.+...++.+..+..+|..++..|++++|+..
T Consensus       180 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  259 (388)
T 1w3b_A          180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDT  259 (388)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3344444554444444444444433322221 111222333455555555555666666666666666666666666666


Q ss_pred             HHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccc
Q 007653          126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN  205 (594)
Q Consensus       126 Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lek  205 (594)
                      |++++++.|.++.         +|.+++.+|.+.|++++|+..|+++++++|+++.+++++|.+|...|++++|+..|++
T Consensus       260 ~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  330 (388)
T 1w3b_A          260 YRRAIELQPHFPD---------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHHTCSSCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHhhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666666666533         5666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          206 AHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       206 Al~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      +++++|++..++..++.+....++...
T Consensus       331 al~~~p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          331 ALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            666666666666666666555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.30  E-value=1.6e-13  Score=143.16  Aligned_cols=142  Identities=13%  Similarity=0.067  Sum_probs=117.6

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+...+...+..+..+..+|..+...|++++|+..|+++++++|.+.         .+|.++|.+|...++|+
T Consensus       150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~  220 (388)
T 1w3b_A          150 RLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL---------DAYINLGNVLKEARIFD  220 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCTT
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHHHcCCHH
Confidence            344566666666667777788888888888888999999999999988888874         37888888998999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~  234 (594)
                      +|+..|.+++.++|+++.+++++|.+|...|++++|+..|+++++++|+++.++..++.+....++...+.
T Consensus       221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  291 (388)
T 1w3b_A          221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE  291 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999998899888899999999999999999999999999999988888888888877776655433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.30  E-value=1.7e-13  Score=127.41  Aligned_cols=132  Identities=11%  Similarity=0.059  Sum_probs=115.1

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee-eeccccc-
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY-  162 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~~klg~y-  162 (594)
                      ++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.         ++.++|.+ |+..++| 
T Consensus        26 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           26 PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---------LYAALATVLYYQASQHM   96 (177)
T ss_dssp             -CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---------HHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCcc
Confidence            334444555555567777889999999999999999999999999999998853         88999999 8899999 


Q ss_pred             -hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          163 -DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       163 -~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                       ++|+..|+++++++|+++.+++.+|.+|...|++++|+.+|++++.++|++......+..+..
T Consensus        97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A           97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence             999999999999999999999999999999999999999999999999999876665555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.30  E-value=1.2e-13  Score=142.64  Aligned_cols=201  Identities=9%  Similarity=-0.033  Sum_probs=143.8

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g  117 (594)
                      ++..+...++..+.++....++.+....|............ ....++..+...+...+...+..+..+..+|..+...|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            44555555556666666666666655555544443333111 12234556777788888888888999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccce-eeeeecccCceeeeccccchhhhhhcceeeeeccc--chHHHHHhccchhhhh
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRT-LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIG  194 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~-l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg  194 (594)
                      +|++|+.+|.+++++.|......... ....++.+++.+|...|+|++|+..|+++++++|+  ++.+++++|.+|..+|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            99999999999999998875410000 11234455699999999999999999999999999  8999999999999999


Q ss_pred             hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653          195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (594)
Q Consensus       195 ~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~  239 (594)
                      ++++|+..|+++++++|++..++..++.+....++...+...+..
T Consensus       228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  272 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR  272 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999998888776655444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.29  E-value=1e-13  Score=143.29  Aligned_cols=192  Identities=11%  Similarity=0.031  Sum_probs=138.5

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHH----------Hhcc
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLK----------KQGN  111 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~----------~~Gn  111 (594)
                      +.-.....+.++....++......|........... .....+++.+...+...+...++....+.          .+|.
T Consensus       106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence            333344555566666555555444544333322211 11222344566666666655555444444          4499


Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchh
Q 007653          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (594)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~  191 (594)
                      .+...|+|++|+.+|.+++++.|....       ..+|+++|.+|...|+|++|+..|+++++++|+++.+|+++|.+|.
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  258 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMID-------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA  258 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999998321       3478999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       192 ~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      .+|++++|+.+|+++++++|++..++..++.+...++++..+...+...+
T Consensus       259 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          259 NGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988776555554444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.29  E-value=3.2e-13  Score=122.46  Aligned_cols=116  Identities=22%  Similarity=0.341  Sum_probs=108.0

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      .+.+..+..+|..++..|+|++|+.+|.+++.+.|.+.         .+|+++|.||...|+|++|+..|.++++++|.+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            34577899999999999999999999999999999874         489999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      +.+++++|.+|..+|++++|+.+|++++.++|++..++..+..+.
T Consensus        81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887776663

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.29  E-value=1.2e-13  Score=133.16  Aligned_cols=190  Identities=13%  Similarity=0.015  Sum_probs=141.4

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g  117 (594)
                      +...+...+...+.++....++......|........... .....++..+...+...+...+.....+..+|..++..|
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  105 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE  105 (243)
T ss_dssp             ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence            3344555555666677777677666666655444333311 112234556777777777777778899999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE  197 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~  197 (594)
                      +|++|+.+|.+++++.|..+.         ++.+++.+|...|+|++|+..|+++++++|+++.+++.+|.+|...|+++
T Consensus       106 ~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A          106 MYKEAKDMFEKALRAGMENGD---------LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             CHHHHHHHHHHHHHHTCCSHH---------HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             cHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999888743         78999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653          198 EAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  237 (594)
Q Consensus       198 eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~  237 (594)
                      +|+..|++++.++|++..++..++.+....++...+....
T Consensus       177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  216 (243)
T 2q7f_A          177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEML  216 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999999999999999999988887665443333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.28  E-value=1.7e-13  Score=119.87  Aligned_cols=116  Identities=12%  Similarity=0.077  Sum_probs=103.4

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---hH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VK  181 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---~k  181 (594)
                      .++.+|..++..|+|++|+..|.++++..|..+.      ...+++++|.||++.|+|++|+..|++++.++|++   +.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence            5778899999999999999999999999998751      01378999999999999999999999999999999   89


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      +++++|.+|..+|++++|+..|++++...|++..+...+..+...
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999998776666555443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.28  E-value=1.2e-13  Score=141.96  Aligned_cols=150  Identities=14%  Similarity=0.105  Sum_probs=129.7

Q ss_pred             HHHHHHHhhhhcccccch--HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653           84 EIATMRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~--~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~  161 (594)
                      ++..+...+...+...+.  .+..+..+|..++..|+|++|+.+|.+++.+.|.++         .+|+++|.+|...|+
T Consensus       196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~l~~~~~~~g~  266 (368)
T 1fch_A          196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------LLWNKLGATLANGNQ  266 (368)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------HHHHHHHHHHHHcCC
Confidence            445566666666666777  788999999999999999999999999999998874         388999999999999


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC-----------ChHHHHHhHHHHHhhhc
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----------GTIADVLRDAKEILMKE  230 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~-----------~~a~~~l~~a~~~l~~~  230 (594)
                      |++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|++           ..++..++.+...+++.
T Consensus       267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            9999999999999999999999999999999999999999999999999988           78999999999998877


Q ss_pred             cCCCCCccchHH
Q 007653          231 DGHHGPRGLLIE  242 (594)
Q Consensus       231 ~~a~~~~~~~ie  242 (594)
                      ..+.......++
T Consensus       347 ~~A~~~~~~~l~  358 (368)
T 1fch_A          347 DAYGAADARDLS  358 (368)
T ss_dssp             GGHHHHHTTCHH
T ss_pred             HhHHHhHHHHHH
Confidence            655444434443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.28  E-value=3e-13  Score=148.12  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=114.5

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      +.+..++.+|+.+++.|+|++|+.+|++++++.|...         .+|+++|.||.++|+|++|+.+|+++++++|+++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   74 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECYGYALGDATRAIELDKKYI   74 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            4466789999999999999999999999999999884         4899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH--HHHhhhccCCCCC
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGHHGP  236 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a--~~~l~~~~~a~~~  236 (594)
                      .+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+  ....++++++...
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~  132 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  132 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999988  5555666655444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.26  E-value=1.2e-13  Score=138.88  Aligned_cols=195  Identities=8%  Similarity=-0.057  Sum_probs=154.7

Q ss_pred             HhcChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhc
Q 007653           33 MMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQG  110 (594)
Q Consensus        33 m~~~p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~G  110 (594)
                      +-.+++ ++..+...+...+.++....++.+....|.........+. .....++..+...+...+...+..+..+..+|
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   97 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG   97 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            344555 5555666666777777777666665555544322221110 11222455666777777777888899999999


Q ss_pred             ccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653          111 NELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (594)
Q Consensus       111 n~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a  189 (594)
                      ..++..| ++++|+.+|.+++.+.|.++.         +|.++|.+|...|+|++|+..|.++++++|++..+++.+|.+
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  168 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGP---------AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE  168 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            9999999 999999999999999998854         799999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       190 l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      |...|++++|+..|++++.++|++..++..++.+....++...+...
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  215 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW  215 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHH
Confidence            99999999999999999999999999999999998888766544333

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.26  E-value=2.4e-13  Score=136.48  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=131.0

Q ss_pred             CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653           80 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  159 (594)
Q Consensus        80 ~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl  159 (594)
                      ....++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++++.|.++.         +|.++|.+|...
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~  219 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATLANG  219 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHT
T ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHc
Confidence            34455666777777777777778899999999999999999999999999999888743         789999999999


Q ss_pred             ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC------------CChHHHHHhHHHHHh
Q 007653          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------------DGTIADVLRDAKEIL  227 (594)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~------------~~~a~~~l~~a~~~l  227 (594)
                      |+|++|+..|+++++++|++..+++.+|.+|..+|++++|+.+|++++.++|+            +..++..++.+...+
T Consensus       220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999            788888889888888


Q ss_pred             hhccCCCCCccchH
Q 007653          228 MKEDGHHGPRGLLI  241 (594)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (594)
                      ++...+.......+
T Consensus       300 g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          300 NRPDLVELTYAQNV  313 (327)
T ss_dssp             TCHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHHH
Confidence            77655443333333

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.25  E-value=7.6e-14  Score=159.37  Aligned_cols=142  Identities=13%  Similarity=-0.030  Sum_probs=128.6

Q ss_pred             hHHHHHHHHhhhhcc--------cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCc
Q 007653           82 PEEIATMRARIDAQM--------NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM  153 (594)
Q Consensus        82 ~~el~aa~~~~~a~~--------~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a  153 (594)
                      ..+++.+...+.+.+        ...++.+..+..+|..++..|+|++|+..|+++++++|.+..         +|+++|
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg  474 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------LVWYRA  474 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------HHHHHH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------HHHHHH
Confidence            334556666676666        677888999999999999999999999999999999999854         899999


Q ss_pred             eeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       154 ~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      .+|+.+|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++ +.+|+++++++|++..++..++.+...+++++++
T Consensus       475 ~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A  553 (681)
T 2pzi_A          475 VAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA  553 (681)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999888876544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.25  E-value=5.3e-13  Score=134.16  Aligned_cols=143  Identities=16%  Similarity=0.147  Sum_probs=122.4

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ++.+...+...+...+..+..+..+|..++..|+|++|+.+|++++.+.+.............+|.++|.+|...|+|++
T Consensus       175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            44566667777777788889999999999999999999999999999875433211112224588999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      |+..|+++++++|+++.+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+....
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  317 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY  317 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999876443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.25  E-value=2.9e-14  Score=132.38  Aligned_cols=109  Identities=12%  Similarity=-0.023  Sum_probs=100.8

Q ss_pred             HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (594)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l  203 (594)
                      ..|.+++.++|.+..         +++++|.+|++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.+|
T Consensus        23 ~~l~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           23 ATLKDINAIPDDMMD---------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             CCTGGGCCSCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence            457888999998854         89999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       204 ekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      +++++++|+++.++..++.+...+++...+...+...+
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al  131 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVI  131 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999998887766666555

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.25  E-value=3.9e-13  Score=136.39  Aligned_cols=103  Identities=26%  Similarity=0.378  Sum_probs=98.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+..++.+|+.++..|+|++|+.+|.+++.++|.++         .+|+|+|.||+++|+|++|+.+|+++++++|++++
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            467899999999999999999999999999999884         48999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      +++++|.+|..+|+|++|+.+|+++++++|++
T Consensus        74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999976

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.24  E-value=4.3e-13  Score=129.95  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=65.1

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP  177 (594)
                      ..+..+..+..+|..++..|+|++|+.+|.+++.+.|.++         .+|+++|.+|...|+|++|+..|+++++++|
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------RGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            4445555555555555555555555555555555555542         2455555555555555555555555555555


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhH
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRD  222 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~------P~~~~a~~~l~~  222 (594)
                      +++.+++.+|.+|..+|++++|+.+|+++++++      |++..++..+..
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            555555555555555555555555555555555      555444444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.24  E-value=1.1e-12  Score=132.99  Aligned_cols=180  Identities=20%  Similarity=0.281  Sum_probs=133.7

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHH------------HHHhcccc
Q 007653           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKM------------LKKQGNEL  113 (594)
Q Consensus        47 mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~------------l~~~Gn~~  113 (594)
                      +...+.++....++......|........... .....+++.+...+...+...++....            ....|..+
T Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  244 (359)
T 3ieg_A          165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL  244 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555545544333222211 111223344555555555544443332            34558889


Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh
Q 007653          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  193 (594)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l  193 (594)
                      +..|+|++|+..|.+++...|.++.     ....++.++|.||.+.|+|++|+..|+++++++|+++.+++.+|.+|..+
T Consensus       245 ~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
T 3ieg_A          245 IRDGRYTDATSKYESVMKTEPSVAE-----YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE  319 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            9999999999999999999888642     11235778999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      |++++|+.+|+++++++|++..++..+..++..+++.+
T Consensus       320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.24  E-value=2.4e-13  Score=118.71  Aligned_cols=101  Identities=18%  Similarity=0.118  Sum_probs=88.2

Q ss_pred             ccccchhHHHHHHHhhhc---cccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchh
Q 007653          115 SEGRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (594)
Q Consensus       115 ~~g~y~eAi~~Y~kAL~l---~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~  191 (594)
                      ..|+|++|+.+|++++++   +|.++         .+|+++|.||+.+|+|++|+..|+++++++|+++.+++++|.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLA---------ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            468999999999999999   57663         489999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       192 ~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      .+|++++|+..|++++.++|+++.+......+.
T Consensus        73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999999999988766554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.23  E-value=3.1e-13  Score=149.91  Aligned_cols=133  Identities=12%  Similarity=0.047  Sum_probs=93.6

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      +.+...+.+.+...+..+..+..+|..++..|+|++|+.+|+++++++|.+..         +|+++|.+|..+|+|++|
T Consensus         6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A   76 (568)
T 2vsy_A            6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---------AVARLGRVRWTQQRHAEA   76 (568)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHH
Confidence            34445555555566666777888888888888888888888888887777643         677888888888888888


Q ss_pred             hhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      +..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888777777777777766

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.23  E-value=8.9e-13  Score=112.75  Aligned_cols=116  Identities=28%  Similarity=0.392  Sum_probs=108.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +..+..+|..++..|+|++|+..|.+++...|...         .++.+++.+|...|+|++|+..+.+++.++|.+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            66889999999999999999999999999988774         378999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ++.+|.+|...|++++|+.+|++++.++|++..++..++.+....
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999998888876543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.9e-13  Score=132.46  Aligned_cols=157  Identities=11%  Similarity=0.080  Sum_probs=124.8

Q ss_pred             HHHHHHhhhhcccccchH-------HHHHHHhcccccccccchhHHHHHHHhhhccccccc-----------------cc
Q 007653           85 IATMRARIDAQMNYEFNA-------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-----------------SE  140 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~-------a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-----------------~e  140 (594)
                      +..+...+...+...+..       +..+..+|..+...|+|++|+.+|.+++.+.|....                 ..
T Consensus        54 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~  133 (258)
T 3uq3_A           54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAY  133 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHH
Confidence            334444455544444433       788999999999999999999999999994432000                 00


Q ss_pred             cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007653          141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (594)
Q Consensus       141 ~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l  220 (594)
                      ..+....+|.++|.+|...|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|++..++..+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            00111447899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhccCCCCCccchH
Q 007653          221 RDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       221 ~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      +.+...+++...+.......+
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHH
Confidence            999999887766555544444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.21  E-value=4.4e-13  Score=112.92  Aligned_cols=105  Identities=14%  Similarity=0.116  Sum_probs=97.9

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--  178 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--  178 (594)
                      ..+..+..+|..++..|+|++|+.+|.+++++.|...         .+|+++|.+|+.+|+|++|+..|+++++++|.  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~   74 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY   74 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc
Confidence            3456788899999999999999999999999998874         37899999999999999999999999999999  


Q ss_pred             chHHHHHhccchhhh-hhHHHHhhhcccccccCCCCC
Q 007653          179 NVKALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       179 ~~ka~~~rg~al~~l-g~~~eAi~~lekAl~l~P~~~  214 (594)
                      +..+++.+|.+|..+ |++++|+++|++++..+|.++
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           75 NKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            999999999999999 999999999999999999764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.21  E-value=5.7e-13  Score=128.34  Aligned_cols=175  Identities=13%  Similarity=0.048  Sum_probs=136.2

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e  121 (594)
                      +.-.....+.++....++......|........... .....+++.+...+...+...+.....+..+|..++..|+|++
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  143 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL  143 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence            333344555566655555554444443333222211 1122345566666777777777788899999999999999999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhh
Q 007653          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      |+..|.+++++.|.+.         .++.++|.+|.+.|+|++|+..+.+++.++|+++.+++.+|.+|..+|++++|+.
T Consensus       144 A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          144 ALPYLQRAVELNENDT---------EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             HHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHHHhCCccH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999998874         3789999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHH
Q 007653          202 DLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       202 ~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      +|+++++++|++..++..+..+...
T Consensus       215 ~~~~~~~~~p~~~~~~~~~~~l~~~  239 (243)
T 2q7f_A          215 MLDKAIDIQPDHMLALHAKKLLGHH  239 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHTC----
T ss_pred             HHHHHHccCcchHHHHHHHHHHHhh
Confidence            9999999999999998888776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.21  E-value=5.9e-13  Score=121.79  Aligned_cols=143  Identities=13%  Similarity=0.172  Sum_probs=124.2

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+..+..+..+|..++..|++++|+.+|.++++..|...         .++.+++.+|...+++++
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~   94 (186)
T 3as5_A           24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV---------KVATVLGLTYVQVQKYDL   94 (186)
T ss_dssp             HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHHHHhcCHHH
Confidence            44555666666666667788899999999999999999999999999988774         378999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      |+..+++++.++|.++.+++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...
T Consensus        95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988887765544333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.21  E-value=7.3e-13  Score=129.03  Aligned_cols=182  Identities=11%  Similarity=0.025  Sum_probs=142.1

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007653           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (594)
Q Consensus        43 A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e  121 (594)
                      +...+...+.++....++......|........... .....+++.+...+...+...+.....+..+|..++..|+|++
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  123 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE  123 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence            444455566666666666555444544333222211 1122345566666777777777778899999999999999999


Q ss_pred             HHHHHHHhhh--ccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHH
Q 007653          122 ALQKYLLAKK--NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  199 (594)
Q Consensus       122 Ai~~Y~kAL~--l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eA  199 (594)
                      |+.+|.+++.  ..|..         ..+++++|.+|...|++++|+..|.++++++|.++.+++.+|.+|..+|++++|
T Consensus       124 A~~~~~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          124 AYQRLLEASQDTLYPER---------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHHTTCTTCTTH---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCccCccc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999  55555         347899999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          200 VSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       200 i~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      +..|++++.++|++..++..+..+....++...+
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  228 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA  228 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence            9999999999999998888888887777655433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.20  E-value=8.9e-13  Score=135.37  Aligned_cols=202  Identities=10%  Similarity=-0.043  Sum_probs=142.2

Q ss_pred             HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007653           40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR  118 (594)
Q Consensus        40 ~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~  118 (594)
                      +..+...+...+.++....++.+....|........... .....++..+...+...+...+..+..+..+|..+...|+
T Consensus        68 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  147 (368)
T 1fch_A           68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  147 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence            333444444555555555555555445544433332211 1122234456666777777777788889999999999999


Q ss_pred             chhHHHHHHHhhhccccccccccc----------------------------------------ee--eeeecccCceee
Q 007653          119 FSNALQKYLLAKKNLQGIHSSEGR----------------------------------------TL--LLACSLNSMSCY  156 (594)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~----------------------------------------~l--~~~~~~N~a~~~  156 (594)
                      +++|+..|.+++.+.|........                                        +.  ...++.++|.+|
T Consensus       148 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~  227 (368)
T 1fch_A          148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  227 (368)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHH
Confidence            999999998888887765431100                                        00  245677888888


Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      ...|+|++|+..|++++.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..++..++.+...+++...+...
T Consensus       228 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  307 (368)
T 1fch_A          228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH  307 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            88999999999999999989998899999999999999999999999999999998888888888888888776655444


Q ss_pred             ccchH
Q 007653          237 RGLLI  241 (594)
Q Consensus       237 ~~~~i  241 (594)
                      ....+
T Consensus       308 ~~~al  312 (368)
T 1fch_A          308 FLEAL  312 (368)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=8.6e-13  Score=112.00  Aligned_cols=97  Identities=21%  Similarity=0.272  Sum_probs=89.2

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  179 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~--  179 (594)
                      .+..+..+|..++..|+|++|+.+|++++++.|.++.         +|+|+|.||+++|+|++|+.+|+++++++|++  
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   73 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---------GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH   73 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence            4678999999999999999999999999999998854         88999999999999999999999999999999  


Q ss_pred             ----hHHHHHhccchhhhhhHHHHhhhccccc
Q 007653          180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (594)
Q Consensus       180 ----~ka~~~rg~al~~lg~~~eAi~~lekAl  207 (594)
                          ..+++++|.++..+|++++|+..|++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence                9999999999999999999999888754

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.19  E-value=6.4e-13  Score=131.61  Aligned_cols=139  Identities=13%  Similarity=0.062  Sum_probs=119.3

Q ss_pred             HHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--
Q 007653           84 EIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--  158 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~---a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k--  158 (594)
                      ++..+...+...+...+..   +.+++.+|.++++.|+|++|+..|++++++.|..+.      ...+++++|.||+.  
T Consensus        30 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~lg~~~~~~~  103 (261)
T 3qky_A           30 KYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------VPQAEYERAMCYYKLS  103 (261)
T ss_dssp             CHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------hHHHHHHHHHHHHHhc
Confidence            3445666666666665555   889999999999999999999999999999886643      13478999999999  


Q ss_pred             ------cccchhhhhhcceeeeecccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC--
Q 007653          159 ------TKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--  213 (594)
Q Consensus       159 ------lg~y~eAi~~~~~AL~ldP~~~ka~-----------------~~rg~al~~lg~~~eAi~~lekAl~l~P~~--  213 (594)
                            .|+|++|+..|+++++++|++..++                 +.+|.+|...|+|++|+..|+++++..|++  
T Consensus       104 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          104 PPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             ccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence                  9999999999999999999987666                 999999999999999999999999999985  


Q ss_pred             -ChHHHHHhHHHHHhh
Q 007653          214 -GTIADVLRDAKEILM  228 (594)
Q Consensus       214 -~~a~~~l~~a~~~l~  228 (594)
                       ..++..++.+...++
T Consensus       184 ~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          184 ADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence             457888888887774

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.18  E-value=1.5e-12  Score=116.27  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             hcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007653           62 LTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  140 (594)
Q Consensus        62 l~~~~pee~~~~~~~-~~~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e  140 (594)
                      +....|+..+...++ .......++..|...+...+...+..+..+.++|.++++.|+|++|+..|+++|+++|.+..  
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--   82 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK--   82 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH--
Confidence            344567666665544 12223345667888888889999999999999999999999999999999999999999854  


Q ss_pred             cceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccch
Q 007653          141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (594)
Q Consensus       141 ~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al  190 (594)
                             +|+++|.||..+|+|++|+.+|+++|+++|++..++..++.|+
T Consensus        83 -------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           83 -------GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                   8999999999999999999999999999999999999998876

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.18  E-value=6.8e-13  Score=134.48  Aligned_cols=186  Identities=10%  Similarity=0.082  Sum_probs=147.8

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g  117 (594)
                      ++..+...+...+.++....++.+....|........... .....++..+...+...+...+.....+..+|..++..|
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            3444555555666666666666555555554443333311 112334556777777777778888899999999999999


Q ss_pred             cchhHHHHHHHhhhccc---cccccccceeeeeecccC------------ceeeeccccchhhhhhcceeeeecccchHH
Q 007653          118 RFSNALQKYLLAKKNLQ---GIHSSEGRTLLLACSLNS------------MSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p---~~~~~e~~~l~~~~~~N~------------a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +|++|+..|.+++++.|   ..+.         ++.++            +.+|...|+|++|+..++++++++|.++.+
T Consensus        86 ~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  156 (359)
T 3ieg_A           86 KLDEAEDDFKKVLKSNPSEQEEKE---------AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL  156 (359)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ChHHHHHHHHHHHhcCCcccChHH---------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            99999999999999999   6643         44444            799999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      ++.+|.+|..+|++++|+..|++++.++|++..++..++.+....++...+
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999998888765543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.16  E-value=1.7e-12  Score=123.05  Aligned_cols=137  Identities=12%  Similarity=0.016  Sum_probs=116.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhccccccc-ccchhHHHHHHHhhh--ccccccccccceeeeeecccCceeeeccc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFSNALQKYLLAKK--NLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~-g~y~eAi~~Y~kAL~--l~p~~~~~e~~~l~~~~~~N~a~~~~klg  160 (594)
                      ++..+...+...+...+.....+..+|..++.. |+|++|+.+|.++++  ..|..         ..+++++|.+|...|
T Consensus        57 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~  127 (225)
T 2vq2_A           57 VNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP---------YIANLNKGICSAKQG  127 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH---------HHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch---------HHHHHHHHHHHHHcC
Confidence            344566666666666777788999999999999 999999999999998  33333         347899999999999


Q ss_pred             cchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCC-CCChHHHHHhHHHHHhhh
Q 007653          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGTIADVLRDAKEILMK  229 (594)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P-~~~~a~~~l~~a~~~l~~  229 (594)
                      ++++|+..|.++++++|.++.+++.+|.+|...|++++|+..|++++.++| ++..++..+..+....+.
T Consensus       128 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (225)
T 2vq2_A          128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN  197 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999999 888887777666555544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.16  E-value=9.7e-13  Score=125.24  Aligned_cols=119  Identities=16%  Similarity=0.097  Sum_probs=107.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +..++.+|..++..|+|++|+.+|.+++.  + .         ..+|+++|.||...|+|++|+..|.+++.++|+++.+
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~-~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~   73 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQD--P-H---------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA   73 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSSS--C-C---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcC--C-C---------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence            55688999999999999999999999963  2 2         3479999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCC----------------hHHHHHhHHHHHhhhccCC
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~----------------~a~~~l~~a~~~l~~~~~a  233 (594)
                      ++++|.+|..+|+|++|+.+|++++.+.|++.                .++..++.+...+++...+
T Consensus        74 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  140 (213)
T 1hh8_A           74 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  140 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHH
Confidence            99999999999999999999999999999887                8889999988888766544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.16  E-value=4.5e-12  Score=124.40  Aligned_cols=131  Identities=20%  Similarity=0.080  Sum_probs=113.2

Q ss_pred             HHHHHHHhhhhcccc----cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc
Q 007653           84 EIATMRARIDAQMNY----EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  159 (594)
Q Consensus        84 el~aa~~~~~a~~~~----~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl  159 (594)
                      +++.+...+...+..    .+..+..+..+|..++..|+|++|+.+|.+++++.|.++.         +|.++|.+|...
T Consensus        20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~   90 (275)
T 1xnf_A           20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQA   90 (275)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHc
Confidence            344444444444443    4567889999999999999999999999999999998743         899999999999


Q ss_pred             ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      |+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+..|++++.++|++......+..+
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999987655544433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.16  E-value=1.8e-12  Score=131.81  Aligned_cols=142  Identities=12%  Similarity=0.024  Sum_probs=125.1

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      .+++.|...+++.+...++.+.++..+|.++...|++++|+..|++++...|...         ..+.+.+..+...+++
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~---------~~~~~~~~~l~~~~~~  201 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR---------YQGLVAQIELLXQAAD  201 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH---------HHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH---------HHHHHHHHHHHhhccc
Confidence            3455677788888888899999999999999999999999999999999988552         3566777778889999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCC
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~~~~a  233 (594)
                      .+|+..|++++.++|+++.+++++|.+|...|++++|+..|+++++++|++  ..++..+..+...+++...+
T Consensus       202 ~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          202 TPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             CHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             CccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            999999999999999999999999999999999999999999999999998  88999999998888765543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.15  E-value=5.3e-12  Score=124.10  Aligned_cols=135  Identities=10%  Similarity=0.011  Sum_probs=114.9

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ++.+...+...+...+..+..+..+|.+++..|+|++|+.+|.++++ .+.++.     ....+|.++|.||...|+|++
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----~~~~~~~~lg~~~~~~~~~~~   92 (272)
T 3u4t_A           19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-----AKSADFEYYGKILMKKGQDSL   92 (272)
T ss_dssp             HHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----CCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----HHHHHHHHHHHHHHHcccHHH
Confidence            33444445555555666677899999999999999999999999999 554432     123358999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh-HHHH
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR-DAKE  225 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~-~a~~  225 (594)
                      |+..|.++++++|.++.+++.+|.+|..+|++++|+.+|+++++++|.+..++..++ .+..
T Consensus        93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998 5443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.15  E-value=5.4e-12  Score=133.44  Aligned_cols=180  Identities=21%  Similarity=0.280  Sum_probs=133.3

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHH------------hcccc
Q 007653           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKK------------QGNEL  113 (594)
Q Consensus        47 mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~------------~Gn~~  113 (594)
                      .+..+.++....++.+....|........... .....+++.+...+...+...++....+..            +|..+
T Consensus       188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (450)
T 2y4t_A          188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL  267 (450)
T ss_dssp             HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555544333333222222111 011223445555555555555555544433            49999


Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhh
Q 007653          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  193 (594)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l  193 (594)
                      +..|+|++|+.+|.+++++.|.++.     ....+|.+++.+|.+.|+|++|+..|+++++++|+++.+|+.+|.+|..+
T Consensus       268 ~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          268 IRDGRYTDATSKYESVMKTEPSIAE-----YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE  342 (450)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            9999999999999999999888632     11236889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       194 g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      |++++|+.+|+++++++|++..++..++.+...+++..
T Consensus       343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  380 (450)
T 2y4t_A          343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ  380 (450)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999888776543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.14  E-value=2.1e-12  Score=120.85  Aligned_cols=140  Identities=16%  Similarity=0.078  Sum_probs=115.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee-eeccccch
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQYD  163 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~~klg~y~  163 (594)
                      ++.+...+...+...++.+..+..+|.++...|++++|+..|++++...| ++.         .+..++.+ +...++..
T Consensus        22 ~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---------~~~~~~~~~~~~~~~~~   91 (176)
T 2r5s_A           22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---------YKSLIAKLELHQQAAES   91 (176)
T ss_dssp             HHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---------HHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---------HHHHHHHHHHHhhcccc
Confidence            44566667777777888899999999999999999999999999999988 542         22223322 22334556


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCC
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~--~~a~~~l~~a~~~l~~~~~a~  234 (594)
                      +|+..++++++++|+++.+++++|.+|...|++++|+..|+++++++|++  ..++..++.+...+++...+.
T Consensus        92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            68999999999999999999999999999999999999999999999986  558999999988887655433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.13  E-value=8.2e-12  Score=118.74  Aligned_cols=105  Identities=16%  Similarity=0.145  Sum_probs=97.3

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch-
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  180 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~-  180 (594)
                      .+..+.++|.+++..|+|++|+.+|.+++.++|.+.         .+|+++|.||..+|+|++|+.+|++++++.|.+. 
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  106 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL  106 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH
Confidence            467899999999999999999999999999999884         4899999999999999999999999999776655 


Q ss_pred             ---------------HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          181 ---------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       181 ---------------ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                                     .+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          107 IDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             EECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                           99999999999999999999999999999998644

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.13  E-value=9e-12  Score=127.17  Aligned_cols=120  Identities=12%  Similarity=-0.008  Sum_probs=103.5

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee----eeccccchhhhhhcceeeee
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC----YLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~----~~klg~y~eAi~~~~~AL~l  175 (594)
                      +...+.+..+|.++.+.|++++|+..|+++++..|...           +.+++.+    +...|+|++|+..|+++++.
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~  195 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------LTQLATAWVSLAAGGEKLQDAYYIFQEMADK  195 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence            56678899999999999999999999999999987762           2344333    23458999999999999999


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      +|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.++.+++.+...+++.
T Consensus       196 ~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          196 CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999887776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.13  E-value=1.9e-12  Score=118.40  Aligned_cols=163  Identities=13%  Similarity=0.061  Sum_probs=127.3

Q ss_pred             hhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH
Q 007653           46 NMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ  124 (594)
Q Consensus        46 ~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~  124 (594)
                      .....+.++....++.+....|+.......... .....+++.+...+...+...+.....+..+|..++..|+|++|+.
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   97 (186)
T 3as5_A           18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP   97 (186)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            334444555555555554444443333222211 1122344556666666666677778899999999999999999999


Q ss_pred             HHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcc
Q 007653          125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS  204 (594)
Q Consensus       125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~le  204 (594)
                      +|.+++...|..+         .++.++|.+|...|+|++|+..+.++++++|.++.+++.+|.+|...|++++|+.+|+
T Consensus        98 ~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           98 LLIKVAEANPINF---------NVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCcHhH---------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999988874         3789999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCChHH
Q 007653          205 NAHEVSPDDGTIA  217 (594)
Q Consensus       205 kAl~l~P~~~~a~  217 (594)
                      +++.++|++....
T Consensus       169 ~~~~~~~~~~~~~  181 (186)
T 3as5_A          169 KANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHCCCGGG
T ss_pred             HHHHcCCCchhhH
Confidence            9999999876543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.12  E-value=3.9e-12  Score=127.62  Aligned_cols=186  Identities=13%  Similarity=0.079  Sum_probs=142.1

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g  117 (594)
                      ++..+...+...+.++....++.+....|........... .....++..+...+...+...+.....+..+|..+...|
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence            4555555566666666666666655555554443332211 112234556677777777777888899999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccC--------------ce-eeeccccchhhhhhcceeeeecccchHH
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS--------------MS-CYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~--------------a~-~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +|++|+..|.+++...|....         ++..+              +. ++...|++++|+..++++++++|.++.+
T Consensus       104 ~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  174 (327)
T 3cv0_A          104 NANAALASLRAWLLSQPQYEQ---------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL  174 (327)
T ss_dssp             CHHHHHHHHHHHHHTSTTTTT---------C--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHH---------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence            999999999999999988754         34444              55 7889999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  225 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA  225 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999888887665543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.12  E-value=2.7e-12  Score=121.55  Aligned_cols=142  Identities=11%  Similarity=-0.043  Sum_probs=124.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-ccch
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYD  163 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g~y~  163 (594)
                      ++.+...+...+...+..+..+..+|..+...|+|++|+.+|.+++++.|...         .++.+++.+|... |+|+
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~l~~~~~~~~~~~~   94 (225)
T 2vq2_A           24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA---------EINNNYGWFLCGRLNRPA   94 (225)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhcCcHH
Confidence            34455555555555666688999999999999999999999999999998874         3789999999999 9999


Q ss_pred             hhhhhcceeee--ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007653          164 ECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  235 (594)
Q Consensus       164 eAi~~~~~AL~--ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~  235 (594)
                      +|+..++++++  .+|.+..+++.+|.+|...|++++|+..|+++++++|++..++..++.+....++...+..
T Consensus        95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A           95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999  7788899999999999999999999999999999999999999999999888876654433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.12  E-value=6.7e-12  Score=128.14  Aligned_cols=128  Identities=11%  Similarity=0.081  Sum_probs=105.2

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhc--ccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQG--NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~G--n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~  161 (594)
                      +++.+...+...+...++........+  +.+...|+|++|+.+|+++++..|.++         .+|+++|.||.++|+
T Consensus       145 ~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~---------~~~~~la~~~~~~g~  215 (291)
T 3mkr_A          145 RLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL---------LLLNGQAACHMAQGR  215 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH---------HHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCC
Confidence            344566666666665555443332222  444567999999999999999999874         489999999999999


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhhhHHH-HhhhcccccccCCCCChHHHHH
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE-AVSDLSNAHEVSPDDGTIADVL  220 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~e-Ai~~lekAl~l~P~~~~a~~~l  220 (594)
                      |++|+..|+++|+++|+++.+++++|.++..+|++++ +..+++++++++|+++.+....
T Consensus       216 ~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          216 WEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999999999999999987 5689999999999999876643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.10  E-value=8.4e-13  Score=121.10  Aligned_cols=110  Identities=7%  Similarity=-0.036  Sum_probs=99.5

Q ss_pred             HHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhh
Q 007653          123 LQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD  202 (594)
Q Consensus       123 i~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~  202 (594)
                      -..|++++.++|.+..         +++++|.+++..|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+
T Consensus         7 ~~~~~~al~~~p~~~~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~   77 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLE---------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS   77 (148)
T ss_dssp             CCSHHHHTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3468899999998843         7899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          203 LSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       203 lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      |++++.++|+++.++..++.+...+++...+...+...+
T Consensus        78 ~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           78 YSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999988776655554444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.09  E-value=5.2e-12  Score=122.98  Aligned_cols=139  Identities=10%  Similarity=-0.004  Sum_probs=123.5

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++++.|...         .++.+++.+|...|+|++
T Consensus        53 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~g~~~~  123 (252)
T 2ho1_A           53 TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---------RVLNNYGGFLYEQKRYEE  123 (252)
T ss_dssp             TGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------HHHHHHHHHHHHHhHHHH
Confidence            34455556666666677788999999999999999999999999999988874         378999999999999999


Q ss_pred             hhhhcceeee--ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007653          165 CIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       165 Ai~~~~~AL~--ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~  232 (594)
                      |+..|++++.  .+|.++.+++.+|.+|...|++++|+.+|++++.++|.+..++..++.+....++...
T Consensus       124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999  8899999999999999999999999999999999999999999999998887765543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.08  E-value=8.4e-12  Score=138.35  Aligned_cols=130  Identities=7%  Similarity=-0.040  Sum_probs=118.3

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      .+++.+...+.+.+...++.+..+..+|..++..|+|++|+.+|+++++++|.++.         +|+++|.||.++|+|
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~  107 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG---------IALWLGHALEDAGQA  107 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCH
Confidence            34567778888888888888999999999999999999999999999999998854         899999999999999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhh---hhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l---g~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                      ++|+..|+++++++|++..+++++|.+|..+   |++++|+..|+++++++|++...+..+.
T Consensus       108 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence            9999999999999999999999999999999   9999999999999999998765554433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.07  E-value=2.6e-12  Score=135.91  Aligned_cols=206  Identities=9%  Similarity=0.079  Sum_probs=148.4

Q ss_pred             HHHHHHhcChh----HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchH
Q 007653           28 RIQQQMMANPE----LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNA  102 (594)
Q Consensus        28 r~~~~m~~~p~----l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~-~~~~el~aa~~~~~a~~~~~~~~  102 (594)
                      .+...+..+|+    +...+...++..+.++....++.+....|............ ....++..+...+...+...+..
T Consensus        14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~   93 (450)
T 2y4t_A           14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF   93 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            33344444553    34445566667777777777777665556554444333111 12234566777788888888888


Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhcccccc---cccc---ceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH---SSEG---RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~---~~e~---~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      +..+..+|..+...|+|++|+..|.+++++.|...   ....   .......++++|.+|...|+|++|+..|+++++++
T Consensus        94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  173 (450)
T 2y4t_A           94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC  173 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999988764   2000   00000013455778999999999999999999999


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      |.++.+++.+|.+|..+|++++|+..|++++.++|++..++..++.+....++...+
T Consensus       174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  230 (450)
T 2y4t_A          174 VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS  230 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999998888888877665543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.06  E-value=2e-12  Score=120.12  Aligned_cols=119  Identities=10%  Similarity=0.018  Sum_probs=104.4

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (594)
Q Consensus       106 l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~  185 (594)
                      +...+..++..|+|++|+..|.+++..+|.++.         +|+++|.+|+..|+|++|+..|.++++++|+++.+++.
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   83 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA   83 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHHHCCSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            445667789999999999999999999998854         89999999999999999999999999999999999999


Q ss_pred             hccc-hhhhhhH--HHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          186 RGQA-YKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       186 rg~a-l~~lg~~--~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      +|.+ |...|++  ++|+.+|++++.++|++..++..++.+....+++..+
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  134 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQA  134 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHH
Confidence            9999 8899999  9999999999999999999999999998888766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.06  E-value=3.7e-12  Score=109.79  Aligned_cols=118  Identities=25%  Similarity=0.300  Sum_probs=92.5

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~  183 (594)
                      ..+..+|..++..|++++|+..|.++++..|...         .++.+++.+|...+++++|+..+.+++.++|.+..++
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   72 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW   72 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch---------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHH
Confidence            3566777788888888888888888888777653         3677788888888888888888888888888888888


Q ss_pred             HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       184 ~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      +.+|.++...|++++|+..|++++.+.|.+..++..++.+....++.
T Consensus        73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  119 (136)
T 2fo7_A           73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY  119 (136)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccH
Confidence            88888888888888888888888888888777777777776655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.04  E-value=2.4e-11  Score=119.13  Aligned_cols=123  Identities=13%  Similarity=0.063  Sum_probs=85.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++++.|.++         .+|+++|.||...|+|++
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~~~la~~~~~~g~~~~  129 (275)
T 1xnf_A           59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------YAHLNRGIALYYGGRDKL  129 (275)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---------HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc---------HHHHHHHHHHHHhccHHH
Confidence            34455555555555566666667777777777777777777777777666653         256666777777777777


Q ss_pred             hhhhcceeeeecccc-----------------------------------------------------------------
Q 007653          165 CIKVGSEVLAYDAKN-----------------------------------------------------------------  179 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~-----------------------------------------------------------------  179 (594)
                      |+..|+++++++|++                                                                 
T Consensus       130 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  209 (275)
T 1xnf_A          130 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS  209 (275)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence            776666666666554                                                                 


Q ss_pred             -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       180 -----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                           +.+++.+|.+|..+|++++|+.+|++++.++|++...
T Consensus       210 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          210 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             ccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence                 4677788888888888888888888888888876553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.03  E-value=1.1e-11  Score=120.82  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=98.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH-
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-  181 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k-  181 (594)
                      +..++.+|..++..|+|++|+..|++++...|..+.      ...+++++|.||++.|+|++|+..|+++++++|++.. 
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            467899999999999999999999999999887642      1237899999999999999999999999999999875 


Q ss_pred             --HHHHhccchhh------------------hhhHHHHhhhcccccccCCCCChHHH
Q 007653          182 --ALYRRGQAYKD------------------IGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       182 --a~~~rg~al~~------------------lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                        ++|.+|.+|..                  .|++++|+..|+++++..|++..+..
T Consensus        78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence              89999999876                  68999999999999999999986654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.02  E-value=2.2e-11  Score=131.54  Aligned_cols=147  Identities=7%  Similarity=-0.006  Sum_probs=129.8

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+. ...+..+|..++..|+|++|+.+|.+++++.|.++.         +|.++|.+|...|+|++
T Consensus       259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~  328 (537)
T 3fp2_A          259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMYFILQDYKN  328 (537)
T ss_dssp             HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHHhcCCHHH
Confidence            34566666666667777 889999999999999999999999999999998854         89999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      |+..|+++++++|+++.+++.+|.+|...|++++|+..|+++++++|++..++..++.+....++...+...+...+
T Consensus       329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888877665544444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.02  E-value=1.9e-11  Score=105.18  Aligned_cols=117  Identities=24%  Similarity=0.348  Sum_probs=102.8

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      .+...+...+...+.....+..+|..++..|++++|+.+|.+++...|...         .++.+++.+|...|+|++|+
T Consensus        19 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~A~   89 (136)
T 2fo7_A           19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------EAWYNLGNAYYKQGDYDEAI   89 (136)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---------HHHHHHHHHHHHhcCHHHHH
Confidence            344444444444555677889999999999999999999999999988774         37889999999999999999


Q ss_pred             hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      ..+.+++.++|.+..+++.+|.+|...|++++|+..|++++.++|+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           90 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999999999999886

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.3e-11  Score=132.22  Aligned_cols=141  Identities=13%  Similarity=0.078  Sum_probs=109.1

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      +.+...+...+...+.....+..+|..++..|+|++|+..|.++++..|.++.         +|+++|.+|.+.|+|++|
T Consensus       321 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          321 DQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPE---------VPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             THHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHH---------HHHHHHHHHHHCCCHHHH
Confidence            34555555555566666777888888888888888888888888888777643         678888888888888888


Q ss_pred             hhhcceeeeecccchH------HHHHhccchhh---hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007653          166 IKVGSEVLAYDAKNVK------ALYRRGQAYKD---IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  235 (594)
Q Consensus       166 i~~~~~AL~ldP~~~k------a~~~rg~al~~---lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~  235 (594)
                      +..|.++++++|++..      +++.+|.+|..   .|++++|+.+|++++.++|++..++..++.+....++...+..
T Consensus       392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  470 (514)
T 2gw1_A          392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT  470 (514)
T ss_dssp             HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence            8888888888887754      88888888888   8888888888888888888888888888888777766554433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.01  E-value=6.1e-12  Score=113.55  Aligned_cols=109  Identities=10%  Similarity=0.026  Sum_probs=95.9

Q ss_pred             HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhc
Q 007653          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (594)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~l  203 (594)
                      ..|.+++.++|.+..         .++++|.++++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus         5 ~~l~~al~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   75 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLE---------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY   75 (142)
T ss_dssp             ----CCTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHH---------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            568889999888743         78999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       204 ekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      ++++.++|+++.++..++.+...+++...+...+...+
T Consensus        76 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999988776655555444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.01  E-value=3e-11  Score=132.79  Aligned_cols=138  Identities=17%  Similarity=0.170  Sum_probs=116.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+...+...+..+..+..+|..+++.|++++|+..|++++++.|..+..  ......+|.+++.+|.+.|+++
T Consensus       456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--SGGGHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc--hhhHHHHHHHHHHHHHHhcCHH
Confidence            34456666666666677778899999999999999999999999999985431100  0001347899999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|++..++..++.+
T Consensus       534 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  593 (597)
T 2xpi_A          534 AAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA  593 (597)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888765

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.00  E-value=2.2e-11  Score=105.27  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=87.6

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHH
Q 007653          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  199 (594)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eA  199 (594)
                      .+|+..|.++++.+|.++.         +|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|
T Consensus         2 ~~a~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML---------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            5789999999999998854         8999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCC--hHHHHHhHHHHHhh
Q 007653          200 VSDLSNAHEVSPDDG--TIADVLRDAKEILM  228 (594)
Q Consensus       200 i~~lekAl~l~P~~~--~a~~~l~~a~~~l~  228 (594)
                      +.+|++++.++|.+.  .+...+..+...++
T Consensus        73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            999999999998643  44445555444443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.99  E-value=3.3e-11  Score=122.35  Aligned_cols=176  Identities=7%  Similarity=-0.069  Sum_probs=142.7

Q ss_pred             chHHHHHHHHhcC-hh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccc
Q 007653           24 DDFARIQQQMMAN-PE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEF  100 (594)
Q Consensus        24 ~~l~r~~~~m~~~-p~-l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~-~~~~~~el~aa~~~~~a~~~~~~  100 (594)
                      +.+..+....+-+ ++ ++..|...+...+.++....++.+....|+......... ......+++.|...+.......+
T Consensus       103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p  182 (287)
T 3qou_A          103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ  182 (287)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence            3444444444332 23 666677778888888888888888777777665544332 11233455678888888888888


Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-  179 (594)
                      +....+...+..+...+++.+|+..|++++..+|.++.         +++++|.+|...|+|++|+..|.++++++|++ 
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~---------~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~  253 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAA---------LATQLALQLHQVGRNEEALELLFGHLRXDLTAA  253 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence            87888888888899999999999999999999999854         89999999999999999999999999999999 


Q ss_pred             -hHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          180 -VKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       180 -~ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                       ..++.+++.+|..+|++++|+..|++++.
T Consensus       254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          254 DGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence             99999999999999999999999998864

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.99  E-value=7.8e-12  Score=126.96  Aligned_cols=130  Identities=12%  Similarity=-0.067  Sum_probs=108.4

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-ccchhhhhhcceeeeecccc
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g~y~eAi~~~~~AL~ldP~~  179 (594)
                      ..+..+.++|+++...|+|++|+.+|.+++++.+....   ......+|.|+|.+|... |+|++|+.+|++||++.|.+
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~  151 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999876421   001134789999999995 99999999999999999865


Q ss_pred             ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh-------HHHHHhHHHHHhhhccCC
Q 007653          180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVLRDAKEILMKEDGH  233 (594)
Q Consensus       180 ------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~-------a~~~l~~a~~~l~~~~~a  233 (594)
                            ..+++++|.+|..+|+|++|+.+|++++.+.|++..       ++..++.+...+++...+
T Consensus       152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  218 (292)
T 1qqe_A          152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAA  218 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence                  678999999999999999999999999999998754       456677777766655433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.99  E-value=2.3e-11  Score=133.63  Aligned_cols=147  Identities=10%  Similarity=-0.051  Sum_probs=125.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+...+...+.....+..+|..+.+.|++++|+.+|.+++++.|.++         .+|.+++.+|.+.|+++
T Consensus       422 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~  492 (597)
T 2xpi_A          422 EHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDP---------LLLNELGVVAFNKSDMQ  492 (597)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---------HHHHHHHHHHHHhCCHH
Confidence            344566666666666677788899999999999999999999999999888874         37999999999999999


Q ss_pred             hhhhhcceeeee------cccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007653          164 ECIKVGSEVLAY------DAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (594)
Q Consensus       164 eAi~~~~~AL~l------dP~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~  236 (594)
                      +|+..|++++++      +|++ ..+|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.+.+...
T Consensus       493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  572 (597)
T 2xpi_A          493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITH  572 (597)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            999999999988      6665 789999999999999999999999999999999999999999999888776654444


Q ss_pred             ccc
Q 007653          237 RGL  239 (594)
Q Consensus       237 ~~~  239 (594)
                      ++.
T Consensus       573 ~~~  575 (597)
T 2xpi_A          573 LHE  575 (597)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.98  E-value=2.1e-11  Score=112.28  Aligned_cols=87  Identities=22%  Similarity=0.190  Sum_probs=81.3

Q ss_pred             eeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      ...|+++|.+|++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HhhhccC
Q 007653          226 ILMKEDG  232 (594)
Q Consensus       226 ~l~~~~~  232 (594)
                      .++++..
T Consensus        91 ~~g~~~~   97 (164)
T 3sz7_A           91 DMADYKG   97 (164)
T ss_dssp             HTTCHHH
T ss_pred             HccCHHH
Confidence            8765543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.98  E-value=1.3e-11  Score=120.15  Aligned_cols=142  Identities=9%  Similarity=-0.027  Sum_probs=113.4

Q ss_pred             HHHHhhhhccccc---chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeee------
Q 007653           87 TMRARIDAQMNYE---FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL------  157 (594)
Q Consensus        87 aa~~~~~a~~~~~---~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~------  157 (594)
                      .+...+...+...   +....++..+|.++++.|+|++|+..|+++++..|..+..      ..+++++|.||.      
T Consensus        22 ~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           22 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------DYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------HHHHHHHHHHHHhhhhhh
Confidence            3444444444333   2345789999999999999999999999999999987531      124566666665      


Q ss_pred             ------------ccccchhhhhhcceeeeecccchHHH-----------------HHhccchhhhhhHHHHhhhcccccc
Q 007653          158 ------------KTKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       158 ------------klg~y~eAi~~~~~AL~ldP~~~ka~-----------------~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                                  ..|++++|+..|+++|+.+|++..++                 +.+|.+|...|+|++|+..|+++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                        47899999999999999999987654                 6789999999999999999999999


Q ss_pred             cCCCCC---hHHHHHhHHHHHhhhccCCC
Q 007653          209 VSPDDG---TIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       209 l~P~~~---~a~~~l~~a~~~l~~~~~a~  234 (594)
                      ..|+++   +++..++.+...+++...+.
T Consensus       176 ~~p~~~~~~~a~~~l~~~~~~~g~~~~A~  204 (225)
T 2yhc_A          176 DYPDTQATRDALPLMENAYRQMQMNAQAE  204 (225)
T ss_dssp             HSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence            999986   67888898888887765443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.98  E-value=5.3e-11  Score=127.36  Aligned_cols=140  Identities=11%  Similarity=0.084  Sum_probs=121.3

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec---c
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---T  159 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k---l  159 (594)
                      .++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|..+..   .....+|+++|.+|..   .
T Consensus       352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~  428 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPLVGKATLLTRNPTV  428 (514)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC---SSCSHHHHHHHHHHHTSCCT
T ss_pred             CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH---HHHHHHHHHHHHHHhhhhhc
Confidence            345566666777777777788899999999999999999999999999998887421   0112278999999999   9


Q ss_pred             ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      |+|++|+..|++++.++|+++.+++.+|.+|...|++++|+.+|+++++++|++..++..+.....
T Consensus       429 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             THHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998887766544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.96  E-value=2.8e-11  Score=126.10  Aligned_cols=116  Identities=10%  Similarity=-0.079  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeee
Q 007653           83 EEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA  147 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~---------------a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~  147 (594)
                      .++..|...|.+.+...+..               +..+.++|.++++.|+|++|+.+|.++|+++|.++         .
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~  231 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------K  231 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------H
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------H
Confidence            35667777777777777666               68999999999999999999999999999999984         4


Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh-hhccccc
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV-SDLSNAH  207 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi-~~lekAl  207 (594)
                      +|+++|.||+.+|+|++|+.+|+++|+++|++..+++.++.++..+|++++|. ..|++.+
T Consensus       232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999994 4554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.96  E-value=8e-11  Score=119.47  Aligned_cols=129  Identities=15%  Similarity=0.128  Sum_probs=99.0

Q ss_pred             HHHHHHhhhhcccccc------hHHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           85 IATMRARIDAQMNYEF------NAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~------~~a~~l~~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      ++.+...+.+.+...+      ..+..+.++|.++... |+|++|+.+|++++++.|....   ......+|.++|.+|.
T Consensus        93 ~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLKA  169 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHH
Confidence            3345444555444332      2467899999999996 9999999999999999886521   0011347899999999


Q ss_pred             ccccchhhhhhcceeeeecccchH-------HHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          158 KTKQYDECIKVGSEVLAYDAKNVK-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       158 klg~y~eAi~~~~~AL~ldP~~~k-------a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                      ++|+|++|+.+|+++++++|++..       +|+++|.+|..+|++++|+.+|++++.++|++...
T Consensus       170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            999999999999999999987643       68999999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.95  E-value=1.9e-11  Score=132.15  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=88.2

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      ..+...+...+...+.....+..+|.+++..|+|++|+..|.+++++.|.++.         +|.++|.+|...|+|++|
T Consensus       327 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          327 KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhCCHHHH
Confidence            34444455555555555566666666666666666666666666666666532         566666666666666666


Q ss_pred             hhhcceeeeecccchHH------HHHhccchhhh----------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          166 IKVGSEVLAYDAKNVKA------LYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka------~~~rg~al~~l----------g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +..|+++++++|++...      ++.+|.+|...          |++++|+.+|+++++++|++..++..++.+....++
T Consensus       398 ~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~  477 (537)
T 3fp2_A          398 IKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK  477 (537)
T ss_dssp             HHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            66666666666654433      34445666666          777777777777777777777777777777666665


Q ss_pred             ccCCC
Q 007653          230 EDGHH  234 (594)
Q Consensus       230 ~~~a~  234 (594)
                      ...+.
T Consensus       478 ~~~A~  482 (537)
T 3fp2_A          478 IDEAI  482 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.94  E-value=1.8e-11  Score=114.63  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeeccc-------chH-----HHHHhccchhhhhhHHHHhhhccccccc------
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-------NVK-----ALYRRGQAYKDIGRLEEAVSDLSNAHEV------  209 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~-------~~k-----a~~~rg~al~~lg~~~eAi~~lekAl~l------  209 (594)
                      .+.++|.++++.|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|++||++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            5688999999999999999999999999999       444     9999999999999999999999999999      


Q ss_pred             -CCCCChHH----HHHhHHHHHhhhccCCCCCccchHHH
Q 007653          210 -SPDDGTIA----DVLRDAKEILMKEDGHHGPRGLLIEE  243 (594)
Q Consensus       210 -~P~~~~a~----~~l~~a~~~l~~~~~a~~~~~~~iee  243 (594)
                       +|++..+|    .+++.+...++++.++...+.+.++-
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             99999999    99999999999999888888877743

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.94  E-value=6.1e-11  Score=126.49  Aligned_cols=132  Identities=16%  Similarity=0.011  Sum_probs=109.2

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc----
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----  177 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP----  177 (594)
                      .+..+..+|.+++..|+|++|+.+|++|+++.+.............+|.|+|.+|..+|+|++|+.+|++++++.+    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3567888999999999999999999999998654332222222345789999999999999999999999998744    


Q ss_pred             ----cchHHHHHhccchhhh--hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          178 ----KNVKALYRRGQAYKDI--GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       178 ----~~~ka~~~rg~al~~l--g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                          ..+..+.++|.++..+  ++|++|+.+|++|++++|+++.++..++.+...+......
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~  191 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS  191 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHH
Confidence                5678899999888765  5799999999999999999999999999988777665443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.93  E-value=2.3e-11  Score=118.80  Aligned_cols=142  Identities=15%  Similarity=0.072  Sum_probs=117.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  175 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---  175 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++++...... ........++.++|.+|...|+|++|+..|.+++.+   
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  117 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  117 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3667889999999999999999999999999987511100 000112458999999999999999999999999998   


Q ss_pred             -----cccchHHHHHhccchhhhhhHHHHhhhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l--------~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                           +|....+++++|.+|..+|++++|+.+|++++.+        +|....++..++.+....++...+.......+
T Consensus       118 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  196 (283)
T 3edt_B          118 VLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL  196 (283)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 5889999999999999999999999999999998        67777888899999888887766555554444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.3e-10  Score=98.29  Aligned_cols=90  Identities=10%  Similarity=0.061  Sum_probs=82.6

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLR  221 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~  221 (594)
                      +|+++|.+|+..|+|++|+..|+++++++|+++.+++++|.+|..+|+|++|+.+|+++++++|++      ..++..++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999998      78888889


Q ss_pred             HHHHHhhhccCCCCCc
Q 007653          222 DAKEILMKEDGHHGPR  237 (594)
Q Consensus       222 ~a~~~l~~~~~a~~~~  237 (594)
                      .+...++....+....
T Consensus        86 ~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           86 LAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHhHhhhHhHH
Confidence            9988888766555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.92  E-value=1.8e-11  Score=114.36  Aligned_cols=125  Identities=17%  Similarity=0.125  Sum_probs=106.2

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      .+.+..+|..++..|+|++|+..|+++++.+|.++.         +++++|.+|...|++++|+..|++++.++| ++..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~   75 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY   75 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence            345778899999999999999999999999999854         899999999999999999999999999999 8877


Q ss_pred             HHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007653          183 LYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  237 (594)
Q Consensus       183 ~~~rg~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~  237 (594)
                      +..++.+.. ..++..+|+..|+++++++|++..++..++.+....++...+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  131 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL  131 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            766664433 3344556899999999999999999999999998887766544333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.92  E-value=3.2e-11  Score=107.44  Aligned_cols=88  Identities=13%  Similarity=0.066  Sum_probs=75.1

Q ss_pred             eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH-------HHH
Q 007653          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-------ADV  219 (594)
Q Consensus       147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a-------~~~  219 (594)
                      .++.|+|.+|++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++...       +..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            3678999999999999999999999999999999999999999999999999999999999999987654       444


Q ss_pred             HhHHHHHhhhccCCC
Q 007653          220 LRDAKEILMKEDGHH  234 (594)
Q Consensus       220 l~~a~~~l~~~~~a~  234 (594)
                      ++.+...++++..+.
T Consensus        89 lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHH
Confidence            555555555444333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.91  E-value=6.8e-11  Score=129.42  Aligned_cols=121  Identities=7%  Similarity=0.011  Sum_probs=106.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.|...+.+.++..+..+..+.++|..+++.|+|++|+.+|+++++++|.++         .+|+++|.+|..+|+|+
T Consensus        21 ~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------KGYYRRAASNMALGKFR   91 (477)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------HHHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Confidence            455666667777777888899999999999999999999999999999999885         48999999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccc--hhhhhhHHHHhhhcc-----------cccccCCCC
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLS-----------NAHEVSPDD  213 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~a--l~~lg~~~eAi~~le-----------kAl~l~P~~  213 (594)
                      +|+..|+++++++|++..+++.++.+  +...|+|++|++.++           +++.++|++
T Consensus        92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999999999999  889999999999999           999999876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.89  E-value=1.7e-10  Score=120.37  Aligned_cols=103  Identities=7%  Similarity=-0.027  Sum_probs=59.0

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~  183 (594)
                      ..+.++|.++++.|+|.+|+.+|.++|+++|.+.         .+|+++|.||+.+|+|++|+.+|+++++++|++..++
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~  301 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR  301 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence            4899999999999999999999999999999884         4899999999999999999999999999999999999


Q ss_pred             HHhccch-hhhhhHHHHhhhcccccccCCCCCh
Q 007653          184 YRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       184 ~~rg~al-~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      +.++.+. ...++++++...|.+++.+.|+++.
T Consensus       302 ~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          302 RELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999995 4567788899999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.88  E-value=1.3e-10  Score=105.20  Aligned_cols=115  Identities=7%  Similarity=-0.000  Sum_probs=98.9

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+..+..+..+|.+++..|+|++|+.+|.+++.+.|..+         .+|+++|.||..+|+|++
T Consensus        29 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~~a~~~~~~~~~~~   99 (166)
T 1a17_A           29 YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------KGYYRRAASNMALGKFRA   99 (166)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHhccHHH
Confidence            44555556666666777788999999999999999999999999999999874         389999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccc--hhhhhhHHHHhhhcccccc
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~a--l~~lg~~~eAi~~lekAl~  208 (594)
                      |+..|.++++++|.+..++..++.+  +...|++++|+..++++..
T Consensus       100 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          100 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999999988555555  8889999999999886543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.87  E-value=3.4e-11  Score=117.65  Aligned_cols=110  Identities=12%  Similarity=-0.011  Sum_probs=94.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  175 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---  175 (594)
                      .+..+..+..+|.+++..|+|++|+.+|.+++.+...... ........+|.++|.+|..+|+|++|+..|++++++   
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999999998411100 000112458999999999999999999999999999   


Q ss_pred             -----cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                           +|....+++++|.+|...|++++|+..|++++.+
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 8889999999999999999999999999999986

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.86  E-value=8.6e-11  Score=98.41  Aligned_cols=91  Identities=12%  Similarity=0.024  Sum_probs=62.6

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeee-ecccCceeeeccccchhhhhhcceeeeecccchHHHHH
Q 007653          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA-CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (594)
Q Consensus       107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~-~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~  185 (594)
                      .++|..++..|+|++|+..|+++++..|.+         .. +|+++|.||+.+|+|++|+..|+++++++|++..++++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVG---------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSST---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            345666667777777777777777776665         33 56777777777777777777777777777777766654


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       186 rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                              +.+.+++..|++++.++|++.
T Consensus        75 --------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 --------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             --------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             --------HHHHHHHHHHHHHhccCcccc
Confidence                    566777777777777666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=2.4e-10  Score=127.91  Aligned_cols=169  Identities=9%  Similarity=-0.033  Sum_probs=138.0

Q ss_pred             chhhhhhhhhcCCChhHHHHHHHHhhcCC-----------hHHHHHHHHhhhhcccccchHHHHHHHhcccccccc--cc
Q 007653           53 EDLKCAAEQLTHTPPEEVAEIGEKLANAS-----------PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RF  119 (594)
Q Consensus        53 e~~~~a~e~l~~~~pee~~~~~~~~~~~~-----------~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g--~y  119 (594)
                      +++....+.+....|+.+.....|.....           ...+..+..-+...+..+++...+|..++.++.+.+  +|
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            44444555555556665555444411110           011556667777778889999999999999999999  66


Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecccchHHHHHhccchhhh-----
Q 007653          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI-----  193 (594)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l-----  193 (594)
                      ++++.+|.++|+++|.+         ..+|.+|+.++.+++ .|++++++++++|+++|.|..+|++|+.++..+     
T Consensus       126 ~~el~~~~k~l~~d~~N---------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~  196 (567)
T 1dce_A          126 ARELELCARFLEADERN---------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD  196 (567)
T ss_dssp             HHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHhhcccc---------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence            99999999999999998         459999999999999 999999999999999999999999999999886     


Q ss_pred             ---------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          194 ---------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       194 ---------g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                               +++++|++++++|+.++|+|..+|..++.+....+++
T Consensus       197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence                     7899999999999999999999999999887776553

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.85  E-value=6e-11  Score=103.93  Aligned_cols=94  Identities=13%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      .|.++|.++++.|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccchH
Q 007653          228 MKEDGHHGPRGLLI  241 (594)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (594)
                      +++..+.......+
T Consensus        86 ~~~~~A~~~~~~al   99 (126)
T 3upv_A           86 KEYASALETLDAAR   99 (126)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHH
Confidence            88776655555444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.84  E-value=8.4e-11  Score=116.95  Aligned_cols=142  Identities=15%  Similarity=0.070  Sum_probs=116.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec--
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--  176 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld--  176 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++.+...... ........++.++|.+|...|+|++|+..|.+++++.  
T Consensus        65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            5667889999999999999999999999999987521100 0001124588999999999999999999999999884  


Q ss_pred             ------ccchHHHHHhccchhhhhhHHHHhhhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          177 ------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       177 ------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l--------~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                            |....+++++|.+|...|++++|+.+|++++.+        +|....++..++.+....++...+.......+
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                  788999999999999999999999999999998        66667788888888888887766555544444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.84  E-value=1.5e-10  Score=125.71  Aligned_cols=111  Identities=8%  Similarity=-0.061  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeee
Q 007653           83 EEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA  147 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~---------------a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~  147 (594)
                      .++..|...|.+.+...+..               +..+.++|.++++.|+|++|+.+|.++|+++|.+.         .
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~  352 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---------K  352 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------H
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------H
Confidence            34566777777777766665               78999999999999999999999999999999984         4


Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD  202 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~  202 (594)
                      +|+++|.||+.+++|++|+.+|+++|+++|++..+++.++.++..++++++|...
T Consensus       353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          353 GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999988754

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.84  E-value=1.1e-10  Score=119.09  Aligned_cols=133  Identities=5%  Similarity=-0.175  Sum_probs=70.3

Q ss_pred             HHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           88 MRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        88 a~~~~~a~~~-~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      +...+.+.+. ..++....|...|..+...|++++|+..|+++|++.|.++.        .+|.+++.++.+.|++++|+
T Consensus        83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A~  154 (308)
T 2ond_A           83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSGR  154 (308)
T ss_dssp             HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------HHHHHHHHHHHHhcCHHHHH
Confidence            4444444444 34455555555555555555566666666666555554421        14555555555555555555


Q ss_pred             hhcceeeeecccchHHHHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      ..|+++++++|.+..+|...+.... ..|++++|+..|+++++++|++..++..+..+...++
T Consensus       155 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  217 (308)
T 2ond_A          155 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             HHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            5555555555555555543333322 2455555555555555555555555555555444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.82  E-value=9.7e-10  Score=122.99  Aligned_cols=135  Identities=7%  Similarity=-0.092  Sum_probs=124.8

Q ss_pred             HHHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeecccCceee
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  156 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~  156 (594)
                      ++...+...+..+++...+|..++.++...++          |++++..|.++|+.+|.+.         .+|++|+.++
T Consensus        47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y---------~aW~hR~w~l  117 (567)
T 1dce_A           47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------GTWHHRCWLL  117 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHH
Confidence            45666777788899999999999999999888          9999999999999999985         4999999999


Q ss_pred             eccc--cchhhhhhcceeeeecccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          157 LKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       157 ~klg--~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      .+++  +|++++++|+++|++||.|..+|+.|+.++..+| .+++++++++++++++|.|..+|..++.+...+...
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            9999  6699999999999999999999999999999999 999999999999999999999999999998887544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.81  E-value=9.3e-11  Score=116.62  Aligned_cols=110  Identities=13%  Similarity=0.038  Sum_probs=93.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  175 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---  175 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++++...... ........++.++|.+|...|+|++|+..|++++++   
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG-KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3667889999999999999999999999999987511100 000012457899999999999999999999999998   


Q ss_pred             -----cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007653          176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (594)
Q Consensus       176 -----dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l  209 (594)
                           +|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 8889999999999999999999999999999974

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.81  E-value=5.9e-10  Score=112.84  Aligned_cols=134  Identities=14%  Similarity=0.034  Sum_probs=107.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..|...+...+...+..+..+.++|.++++.|+|++|+..|+++++++|.+.         .+|+++|.+|..+|+|+
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~g~~~   89 (281)
T 2c2l_A           19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV---------KAHFFLGQCQLEMESYD   89 (281)
T ss_dssp             CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH---------HHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Confidence            345566667777777888899999999999999999999999999999999884         48999999999999999


Q ss_pred             hhhhhcceeeeecccchHH-------HHHhc----------------------cchhhhhhHHHHhhhcccccccCCCCC
Q 007653          164 ECIKVGSEVLAYDAKNVKA-------LYRRG----------------------QAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka-------~~~rg----------------------~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      +|+.+|+++++++|++...       ..+++                      ...+..|++++|++.|+++++++|++.
T Consensus        90 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~  169 (281)
T 2c2l_A           90 EAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG  169 (281)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHH
T ss_pred             HHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence            9999999999999976211       11111                      011236899999999999999999987


Q ss_pred             hHHHHHhHHHHH
Q 007653          215 TIADVLRDAKEI  226 (594)
Q Consensus       215 ~a~~~l~~a~~~  226 (594)
                      .+...+..+...
T Consensus       170 ~~~~~l~~~~~~  181 (281)
T 2c2l_A          170 HIRAQQACIEAK  181 (281)
T ss_dssp             HHTHHHHHHHHH
T ss_pred             hhhhHHHHHHHH
Confidence            766666554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.80  E-value=3.5e-10  Score=115.34  Aligned_cols=129  Identities=9%  Similarity=-0.016  Sum_probs=111.6

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccc-------cccc-------hhHHHHHHHhhh-ccccccccccceeeeeecc
Q 007653           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYS-------EGRF-------SNALQKYLLAKK-NLQGIHSSEGRTLLLACSL  150 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~-------~g~y-------~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~  150 (594)
                      ..+...+.+.+...+..+..|...|..+..       .|++       ++|+..|++++. +.|.+.         .+|.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---------~~~~  103 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------LLYF  103 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---------HHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---------HHHH
Confidence            345556677777788888899999988763       4776       999999999999 688874         4899


Q ss_pred             cCceeeeccccchhhhhhcceeeeecccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k-a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +++.++.+.|++++|+..|+++|+++|.++. +|+.+|.++.+.|++++|+..|++|++++|.+..++.....+
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999997 999999999999999999999999999999887776544444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.78  E-value=1.7e-10  Score=101.88  Aligned_cols=91  Identities=13%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      .++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhccCCCCCcc
Q 007653          228 MKEDGHHGPRG  238 (594)
Q Consensus       228 ~~~~~a~~~~~  238 (594)
                      ++...+.....
T Consensus        99 g~~~~A~~~~~  109 (121)
T 1hxi_A           99 HNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            87765443333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.77  E-value=2.2e-10  Score=119.75  Aligned_cols=155  Identities=15%  Similarity=0.097  Sum_probs=123.7

Q ss_pred             HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec
Q 007653           85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (594)
Q Consensus        85 l~aa~~~~~a~~~~------~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k  158 (594)
                      +..+...+...+..      ....+..+..+|..++..|+|.+|+.+|.+++++.+....  .......++.++|.||..
T Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~~  196 (383)
T 3ulq_A          119 YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFLD  196 (383)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHHH
Confidence            44455555555443      4457889999999999999999999999999998776532  011224589999999999


Q ss_pred             cccchhhhhhcceeeeecccc------hHHHHHhccchhhhhhHHHHhhhcccccc-----cC-CCCChHHHHHhHHHHH
Q 007653          159 TKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VS-PDDGTIADVLRDAKEI  226 (594)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~------~ka~~~rg~al~~lg~~~eAi~~lekAl~-----l~-P~~~~a~~~l~~a~~~  226 (594)
                      +|+|++|+..|.+++++.+..      +.+++++|.+|..+|++++|+.+|++++.     .+ |....++..++.+...
T Consensus       197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            999999999999999886544      36999999999999999999999999999     46 7777888999999888


Q ss_pred             hhhccCCCCCccchH
Q 007653          227 LMKEDGHHGPRGLLI  241 (594)
Q Consensus       227 l~~~~~a~~~~~~~i  241 (594)
                      +++...+.......+
T Consensus       277 ~g~~~~A~~~~~~al  291 (383)
T 3ulq_A          277 LGKIDKAHEYHSKGM  291 (383)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            887765554444444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.77  E-value=9e-10  Score=113.94  Aligned_cols=169  Identities=8%  Similarity=-0.086  Sum_probs=139.9

Q ss_pred             CchhhhhhhhhcCCChhHHHHHHHH--hhcCCh-HHHHHHHHhhhhcccccchHHHHHHHhcccc----ccc---ccchh
Q 007653           52 PEDLKCAAEQLTHTPPEEVAEIGEK--LANASP-EEIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSE---GRFSN  121 (594)
Q Consensus        52 pe~~~~a~e~l~~~~pee~~~~~~~--~~~~~~-~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~----~~~---g~y~e  121 (594)
                      .++.....+.+....|+.......|  +...-. ..+..+..-+...+..+++...++..++.++    ...   +++.+
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            3455556666666666666555444  111111 2455566667777778899899999999888    555   78999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeecccCceeeeccccch--hhhhhcceeeeecccchHHHHHhccchhhhhh----
Q 007653          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR----  195 (594)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~--eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~----  195 (594)
                      ++.+|.++|+.+|.+.         .+|.+|+.++.++++|+  ++++.|+++|++||.|..+|+.|+.++..+++    
T Consensus       129 EL~~~~~~l~~~pkny---------~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          129 EFDILEAMLSSDPKNH---------HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             HHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred             HHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence            9999999999999984         49999999999999999  99999999999999999999999999999998    


Q ss_pred             --HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          196 --LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       196 --~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                        ++++++++++++.++|+|..++..++.+...+++
T Consensus       200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence              9999999999999999999999999998887764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.75  E-value=6.1e-10  Score=90.80  Aligned_cols=76  Identities=32%  Similarity=0.463  Sum_probs=35.9

Q ss_pred             cccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      ++++|.+|...++|++|+..|+++++++|+++.+++++|.+|...|++++|+.+|++++.++|++..++..++.+.
T Consensus        12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444555555555555555555555555454444444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.75  E-value=4.8e-10  Score=104.74  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=81.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccch----------hHHHHHHHhhhccccccccccceeeeeecccCc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS----------NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM  153 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~----------eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a  153 (594)
                      .++.+...+...+..+++.++.|.++|.++...++|+          +|+.+|++||+++|....         +|+|+|
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------A~~~LG   87 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIG   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---------HHHHHH
Confidence            4677888889999999999999999999999998865          999999999999999954         899999


Q ss_pred             eeeeccc-----------cchhhhhhcceeeeecccchH
Q 007653          154 SCYLKTK-----------QYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       154 ~~~~klg-----------~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+|..+|           +|++|+.+|++||+++|++..
T Consensus        88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            9999885           899999999999999999853

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=1.2e-10  Score=119.14  Aligned_cols=127  Identities=11%  Similarity=0.003  Sum_probs=100.4

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      ...+..+.++|.++...|+|++|+.+|.+++++.+....   ......+|.|+|.+|.. |+|++|+.+|+++|++.+..
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~  148 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE  148 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence            345778999999999999999999999999998654321   00123578899999999 99999999999999998754


Q ss_pred             ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhc
Q 007653          180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKE  230 (594)
Q Consensus       180 ------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~l~~~  230 (594)
                            ..+++++|.+|..+|+|++|+.+|++++.+.|++..      ++..++.+...++++
T Consensus       149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  211 (307)
T 2ifu_A          149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY  211 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence                  678999999999999999999999999998776542      334444444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.73  E-value=8.2e-10  Score=101.25  Aligned_cols=92  Identities=7%  Similarity=-0.050  Sum_probs=81.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+..+.++|.++++.|+|.+|+..|.++|+++|.++         .+|+++|.||..+|+|++|+.+|.++++++|+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~---------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE---------KALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch---------HHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            566778999999999999999999999999999999985         48999999999999999999999999999999


Q ss_pred             ch-HHHHHhccchhhhhhHHHH
Q 007653          179 NV-KALYRRGQAYKDIGRLEEA  199 (594)
Q Consensus       179 ~~-ka~~~rg~al~~lg~~~eA  199 (594)
                      +. .+...++.+...++++.+.
T Consensus       130 ~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A          130 AASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            98 6666777777666655443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.73  E-value=9.1e-10  Score=95.42  Aligned_cols=102  Identities=11%  Similarity=-0.001  Sum_probs=89.5

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+.....+..+|.+++..|+|++|+.+|.+++++.|.++         .+++++|.+|..+|+|++
T Consensus        32 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------~~~~~la~~~~~~~~~~~  102 (133)
T 2lni_A           32 YPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI---------KGYTRKAAALEAMKDYTK  102 (133)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch---------HHHHHHHHHHHHHhhHHH
Confidence            33455555566666666788999999999999999999999999999999874         389999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhh
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~  195 (594)
                      |+..|.++++++|.+..+++.++.++..+|+
T Consensus       103 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          103 AMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999987764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.72  E-value=7.5e-10  Score=90.24  Aligned_cols=62  Identities=23%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~  239 (594)
                      .++.+++.+|.+|...|+|++|+.+|++++.++|++..++..++.+....++...+......
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   68 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK   68 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            46777888888888888888888888888888888888888888777777666554443333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.72  E-value=5e-10  Score=117.07  Aligned_cols=111  Identities=14%  Similarity=0.119  Sum_probs=97.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee----
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----  174 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~----  174 (594)
                      ....+..+..+|.++...|+|++|+.+|.+++++.+....   ......++.|+|.||..+|+|++|+.+|.++++    
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~  256 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE  256 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            5667789999999999999999999999999998775532   122345899999999999999999999999999    


Q ss_pred             -ec-ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          175 -YD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       175 -ld-P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                       .+ |..+.+++++|.+|..+|++++|+.+|++++.+.+.
T Consensus       257 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          257 SNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             46 889999999999999999999999999999998543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.70  E-value=8.7e-10  Score=94.68  Aligned_cols=103  Identities=10%  Similarity=-0.059  Sum_probs=90.6

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++         .+++++|.+|...++|++
T Consensus        28 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~   98 (131)
T 2vyi_A           28 FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS---------KAYGRMGLALSSLNKHVE   98 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH---------HHHHHHHHHHHHhCCHHH
Confidence            33455555555555666788999999999999999999999999999998874         388999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhH
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  196 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~  196 (594)
                      |+..+.++++++|++..+++.++.++..+|++
T Consensus        99 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           99 AVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999876

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.68  E-value=1.3e-09  Score=111.17  Aligned_cols=130  Identities=13%  Similarity=0.042  Sum_probs=109.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+.......+... .++.+|..+++.++|.+|+.+|++++...+...       ...+++++|.++..+|+++
T Consensus       117 ~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~-------~~~a~~~LG~al~~LG~~~  188 (282)
T 4f3v_A          117 NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL-------AGAAGVAHGVAAANLALFT  188 (282)
T ss_dssp             CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH-------HHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHHHHHHHCCCHH
Confidence            45567777777777778778 999999999999999999999998877532210       0237899999999999999


Q ss_pred             hhhhhcceeeeec--cc-chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          164 ECIKVGSEVLAYD--AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       164 eAi~~~~~AL~ld--P~-~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      +|+..|++++.-.  |. .+.+++++|.|+..+|+.++|+..|++++.++|+ ..++..|..
T Consensus       189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            9999999998554  65 7789999999999999999999999999999998 776666654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.68  E-value=1.2e-09  Score=103.49  Aligned_cols=96  Identities=4%  Similarity=-0.095  Sum_probs=83.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...+.++|.+++..|+|++|+.+|.++++++|.+.         .+|+++|.||..+|+|++|+.+|.++++++|++..+
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  158 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---------KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  158 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            37899999999999999999999999999999884         489999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHh-hhccccc
Q 007653          183 LYRRGQAYKDIGRLEEAV-SDLSNAH  207 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi-~~lekAl  207 (594)
                      +..++.++..++++.++. ..|.+.+
T Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          159 RNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999887 4444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.68  E-value=4.5e-10  Score=113.55  Aligned_cols=136  Identities=13%  Similarity=0.006  Sum_probs=108.2

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee-------ee
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-------AY  175 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL-------~l  175 (594)
                      ...++.+|..++..++|++|+.+|.+++.+.+.....   ...+.+|.++|.+|..+|+|++|+.+|.+++       ..
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  191 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence            3456678999999999999999999999976554321   1123378999999999999999999999999       44


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhc-cCCCCCccchH
Q 007653          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKE-DGHHGPRGLLI  241 (594)
Q Consensus       176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~-~~a~~~~~~~i  241 (594)
                      .+..+.+++++|.+|..+|+|++|+.+|++++.+.+..      ..++..++.+...+++. +.+...+...+
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            56677899999999999999999999999999987654      56788889988888743 44444444333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.67  E-value=1.8e-09  Score=110.20  Aligned_cols=111  Identities=12%  Similarity=0.012  Sum_probs=95.1

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-  179 (594)
                      ..+..+.++|.++.. |+|++|+.+|++++++.+....   ......++.|+|.+|.++|+|++|+.+|++++++.|.+ 
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            356889999999999 9999999999999998876421   11124578999999999999999999999999987754 


Q ss_pred             -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       180 -----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                           ..+++.+|.+|..+|++++|+.+|++++ ++|.+...
T Consensus       190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence                 4588999999999999999999999999 99987653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.67  E-value=1.8e-09  Score=90.41  Aligned_cols=85  Identities=21%  Similarity=0.185  Sum_probs=79.5

Q ss_pred             eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHH
Q 007653          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAK  224 (594)
Q Consensus       147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~  224 (594)
                      .+++++|.+|+..|+|++|+..|+++++++|.+..+++++|.+|..+|++++|+.+|+++++++|+  +..++..++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            378999999999999999999999999999999999999999999999999999999999999999  999999999887


Q ss_pred             HHh-hhcc
Q 007653          225 EIL-MKED  231 (594)
Q Consensus       225 ~~l-~~~~  231 (594)
                      ..+ ++.+
T Consensus        87 ~~~~~~~~   94 (112)
T 2kck_A           87 RYIEGKEV   94 (112)
T ss_dssp             TTCSSCSH
T ss_pred             HHHhCCHH
Confidence            777 6544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.66  E-value=6.7e-10  Score=96.55  Aligned_cols=102  Identities=9%  Similarity=0.080  Sum_probs=85.7

Q ss_pred             HHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc
Q 007653           86 ATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (594)
Q Consensus        86 ~aa~~~~~a~~~~---~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y  162 (594)
                      +.+...+.+.+..   .+..+..+..+|.+++..|+|++|+.+|+++++++|.++.         +++++|.||..+|+|
T Consensus         7 ~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            7 AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---------LRVFYAMVLYNLGRY   77 (117)
T ss_dssp             CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHcCCH
Confidence            3444555555555   5778899999999999999999999999999999999854         899999999999999


Q ss_pred             hhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007653          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (594)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl  207 (594)
                      ++|+..|.+++.++|+++...           .|..|+..|.+.+
T Consensus        78 ~~A~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l  111 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDETIQ-----------SYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHH
Confidence            999999999999999998653           4666776666554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.66  E-value=2.3e-10  Score=119.51  Aligned_cols=197  Identities=13%  Similarity=0.040  Sum_probs=137.0

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHH---HHHHH--hhcCChHHHHHHHHhhhhcccc------cchHHHHHH
Q 007653           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVA---EIGEK--LANASPEEIATMRARIDAQMNY------EFNAAKMLK  107 (594)
Q Consensus        39 l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~---~~~~~--~~~~~~~el~aa~~~~~a~~~~------~~~~a~~l~  107 (594)
                      +...+...+...+.++....++......|++..   .....  .......+++.+...+...+..      .+..+..+.
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            334455555566666666655555443443221   11111  0111122344455555544443      567788999


Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-----------------chhhhhhcc
Q 007653          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------YDECIKVGS  170 (594)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-----------------y~eAi~~~~  170 (594)
                      .+|..++..|+|++|+.+|.+++++.+....   ......+|.++|.+|...|+                 |++|+..|.
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999998543211   11124588999999999999                 999999999


Q ss_pred             eeeeec------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhccCCCCCcc
Q 007653          171 EVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       171 ~AL~ld------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                      +++++.      +..+.+++++|.+|...|+|++|+.+|++++.+.|.+..      ++..++.+....+++..+.....
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            998874      456779999999999999999999999999999887655      77777777777766554443333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.66  E-value=1.7e-10  Score=102.61  Aligned_cols=128  Identities=15%  Similarity=0.146  Sum_probs=102.3

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-  179 (594)
                      ..+..+..+|..++..|+|++|+.+|.+++++.+....   ......++.++|.+|...|+|++|+..+.+++.+.+.. 
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            34668899999999999999999999999998775432   11223478999999999999999999999999887653 


Q ss_pred             -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhcc
Q 007653          180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKED  231 (594)
Q Consensus       180 -----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~  231 (594)
                           ..+++++|.+|..+|++++|+.+|++++.+.+..      ..++..++.+....++..
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence                 7789999999999999999999999999875432      345566666666665544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.65  E-value=3.4e-09  Score=112.89  Aligned_cols=135  Identities=11%  Similarity=0.017  Sum_probs=111.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccc---cccchhHHHHHHHhhhccccccccccceeeeeecccCce----ee
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS----CY  156 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~----~~  156 (594)
                      +++.|...+.+.+...++.++.+..+|..++.   .+++.+|+..|+++++++|.++.         ++.+++.    ++
T Consensus       153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---------~~~~l~~~~~~~~  223 (472)
T 4g1t_A          153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---------LKVLLALKLHKMR  223 (472)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------HHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------HHHHHHHHHHHHH
Confidence            45677778888888888888888888888654   45668899999999999988753         5666654    45


Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ...+++++|+..+++++.++|.++.+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus       224 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             ------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999998876544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.65  E-value=3.6e-09  Score=111.95  Aligned_cols=97  Identities=9%  Similarity=-0.003  Sum_probs=90.8

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP  177 (594)
                      ..+..+..+.++|.++++.|+|++|+.+|+++|+++|.++         .+|+++|.||+.+++|++|+.+|+++++++|
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT---------KALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            5667789999999999999999999999999999999884         4899999999999999999999999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhc
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDL  203 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~l  203 (594)
                      ++..++..++.++..+++++++.+.+
T Consensus       339 ~~~~~~~~l~~~~~~~~~~~~a~k~~  364 (370)
T 1ihg_A          339 EDKAIQAELLKVKQKIKAQKDKEKAA  364 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.64  E-value=6.1e-10  Score=104.29  Aligned_cols=130  Identities=12%  Similarity=-0.015  Sum_probs=99.4

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-----
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----  175 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-----  175 (594)
                      ..+..+..+|..++..|+|++|+.+|.+++.+......   ......++.++|.+|...|+|++|+..|.+++.+     
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            45778899999999999999999999999985443211   1122457889999999999999999999999988     


Q ss_pred             -cc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCC
Q 007653          176 -DA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       176 -dP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~------~a~~~l~~a~~~l~~~~~a  233 (594)
                       ++ ....+++++|.+|..+|++++|+.+|++++.+.+...      .++..++.+....++...+
T Consensus       101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A          101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence             33 4567899999999999999999999999987654322      2335666666666655443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.63  E-value=9.4e-10  Score=96.80  Aligned_cols=96  Identities=11%  Similarity=0.024  Sum_probs=86.9

Q ss_pred             eeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      ...|+++|.+|+..|+|++|+..|.+++.++|+++.+++++|.+|..+|+|++|+.+|++++.++|++..++..++.+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhccCCCCCccchH
Q 007653          226 ILMKEDGHHGPRGLLI  241 (594)
Q Consensus       226 ~l~~~~~a~~~~~~~i  241 (594)
                      .++++..+.......+
T Consensus        89 ~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           89 EMESYDEAIANLQRAY  104 (137)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            9887765554444444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.63  E-value=2.6e-09  Score=89.21  Aligned_cols=79  Identities=19%  Similarity=0.392  Sum_probs=70.9

Q ss_pred             cccCceeeeccccchhhhhhcceeeeecccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHH--HHHhHHHH
Q 007653          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVLRDAKE  225 (594)
Q Consensus       149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k-a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~--~~l~~a~~  225 (594)
                      .+++|.+|++.|+|++|+..|+++++++|+++. +++++|.+|..+|++++|+.+|+++++++|++..++  ..+..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999 999999999999999999999999999999999987  55555444


Q ss_pred             Hh
Q 007653          226 IL  227 (594)
Q Consensus       226 ~l  227 (594)
                      ..
T Consensus        83 ~~   84 (99)
T 2kc7_A           83 FY   84 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.63  E-value=7.3e-10  Score=94.16  Aligned_cols=71  Identities=20%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             eeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       146 ~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                      ..+|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|.+...
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~   77 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ   77 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence            34789999999999999999999999999999999999999999999999999999999999998865443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.63  E-value=7.5e-10  Score=115.81  Aligned_cols=149  Identities=13%  Similarity=0.004  Sum_probs=119.5

Q ss_pred             HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec
Q 007653           85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (594)
Q Consensus        85 l~aa~~~~~a~~~~------~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k  158 (594)
                      +..+...+...+..      .+..+..+..+|.+++..|+|.+|+.+|.+++++.+.....  ....+.++.++|.||..
T Consensus       117 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~~  194 (378)
T 3q15_A          117 YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYDD  194 (378)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHHH
Confidence            34455444444332      45578899999999999999999999999999987754320  11235588999999999


Q ss_pred             cccchhhhhhcceeeeecc------cchHHHHHhccchhhhhhHHHHhhhcccccc-----cCCCCChHHHHHhHHHHHh
Q 007653          159 TKQYDECIKVGSEVLAYDA------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~-----l~P~~~~a~~~l~~a~~~l  227 (594)
                      +|+|++|+..|.+++++.+      ....+++++|.+|..+|++++|+.+|++++.     .+|....++..++.+...+
T Consensus       195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  274 (378)
T 3q15_A          195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA  274 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence            9999999999999998743      3467899999999999999999999999999     7887788888999998888


Q ss_pred             hhccCCCC
Q 007653          228 MKEDGHHG  235 (594)
Q Consensus       228 ~~~~~a~~  235 (594)
                      ++...+..
T Consensus       275 g~~~~A~~  282 (378)
T 3q15_A          275 GQTQKAFQ  282 (378)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            77654433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.63  E-value=3.5e-09  Score=109.49  Aligned_cols=134  Identities=7%  Similarity=-0.167  Sum_probs=122.0

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeecccCceee----ecc-
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY----LKT-  159 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~----~kl-  159 (594)
                      .+...+...+..+++...++..++.++...+  +|.+++..+.++|..+|.+.         .+|+.|+.++    ..+ 
T Consensus        51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y---------~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY---------QIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC---------HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH---------HHHHHHHHHHHHHHHhcc
Confidence            3555666777788898999999999999988  99999999999999999994         4899999999    667 


Q ss_pred             --ccchhhhhhcceeeeecccchHHHHHhccchhhhhhHH--HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          160 --KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       160 --g~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~--eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                        +++++++..|+++|+++|+|..+|+.|+.++..+++++  ++++.++++++++|.|..++...+.+...++.
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              78999999999999999999999999999999999999  99999999999999999999999888777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.62  E-value=8.8e-10  Score=113.85  Aligned_cols=140  Identities=14%  Similarity=0.104  Sum_probs=115.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++++.+....   ......+|.++|.+|...|+|++|+..|++++.+.+.
T Consensus       183 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  259 (406)
T 3sf4_A          183 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  259 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            4556778999999999999999999999999998776532   1122347899999999999999999999999999887


Q ss_pred             c------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          179 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       179 ~------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                      .      ..+++.+|.+|...|++++|+.+|++++.+.+..      ..++..++.+....++...+.......+
T Consensus       260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6      8899999999999999999999999999986654      4567778888777777665544444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.62  E-value=1.4e-09  Score=109.90  Aligned_cols=107  Identities=12%  Similarity=0.184  Sum_probs=90.7

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc--
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  179 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~--  179 (594)
                      .+..+.++|.+++..|+|++|+.+|.+++++....+.  .......+|+|+|.+|.++|+|++|+.+|.++|++.+..  
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence            3567999999999999999999999999975443311  122235589999999999999999999999999988665  


Q ss_pred             ----hHHHHHhccchhhhhh-HHHHhhhcccccccC
Q 007653          180 ----VKALYRRGQAYKDIGR-LEEAVSDLSNAHEVS  210 (594)
Q Consensus       180 ----~ka~~~rg~al~~lg~-~~eAi~~lekAl~l~  210 (594)
                          +.+|+++|.+|..+|+ +++|+.+|++|+.+.
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence                8899999999999995 699999999998764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.62  E-value=3.6e-09  Score=110.55  Aligned_cols=111  Identities=11%  Similarity=0.056  Sum_probs=98.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeee----
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----  174 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~----  174 (594)
                      ....+..+..+|.++...|+|++|+.+|.+++++.+....   ......++.|+|.||..+|+|++|+..|.+++.    
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            4457889999999999999999999999999998654321   112345889999999999999999999999999    


Q ss_pred             -ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          175 -YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       175 -ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                       .+|..+.+++++|.+|..+|++++|+.+|++++++.+.
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             88999999999999999999999999999999998765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.61  E-value=3.4e-10  Score=116.99  Aligned_cols=138  Identities=16%  Similarity=0.092  Sum_probs=114.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-----------------
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------  161 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-----------------  161 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++++.+....   ......++.++|.+|...|+                 
T Consensus        83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a  159 (406)
T 3sf4_A           83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV  159 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence            4566889999999999999999999999999998876532   11224478999999999999                 


Q ss_pred             ---chhhhhhcceeeee------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH
Q 007653          162 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI  226 (594)
Q Consensus       162 ---y~eAi~~~~~AL~l------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~  226 (594)
                         |++|+..|.+++.+      .|....+++++|.+|..+|++++|+.+|++++.+.|....      ++..++.+...
T Consensus       160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence               99999999999987      5667889999999999999999999999999999887655      77788888777


Q ss_pred             hhhccCCCCCccc
Q 007653          227 LMKEDGHHGPRGL  239 (594)
Q Consensus       227 l~~~~~a~~~~~~  239 (594)
                      .++...+......
T Consensus       240 ~g~~~~A~~~~~~  252 (406)
T 3sf4_A          240 LGEFETASEYYKK  252 (406)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             cCChHHHHHHHHH
Confidence            7766554443333

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.60  E-value=9.1e-10  Score=114.97  Aligned_cols=125  Identities=16%  Similarity=0.116  Sum_probs=109.8

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee----
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  175 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l----  175 (594)
                      ...+..+..+|..++..|+|++|+.+|++++++.|.++.     ....+|+++|.+|+..|+|++|+..|++++++    
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            455778889999999999999999999999999887642     11247899999999999999999999999998    


Q ss_pred             --cccchHHHHHhccchhhhhhHHHHhhhccccccc------CCCCChHHHHHhHHHHHhhh
Q 007653          176 --DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       176 --dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l------~P~~~~a~~~l~~a~~~l~~  229 (594)
                        +|..+.+++.+|.+|..+|++++|+.+|++++.+      .|....++..++.+...+++
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence              7889999999999999999999999999999998      45556688888888888877

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.58  E-value=4.2e-09  Score=110.66  Aligned_cols=169  Identities=9%  Similarity=-0.062  Sum_probs=136.8

Q ss_pred             CchhhhhhhhhcCCChhHHHHHHHHhhcC--ChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-c-cchhHHHHHH
Q 007653           52 PEDLKCAAEQLTHTPPEEVAEIGEKLANA--SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-G-RFSNALQKYL  127 (594)
Q Consensus        52 pe~~~~a~e~l~~~~pee~~~~~~~~~~~--~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~-g-~y~eAi~~Y~  127 (594)
                      .++.....+.+....|+.......|...+  -...+.....-+...+..+++...++..++.++... + ++.+++.+|.
T Consensus        70 se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           70 SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            34455556666666666655544441111  111244555666667778999999999999998887 7 8999999999


Q ss_pred             HhhhccccccccccceeeeeecccCceeeeccccch--------hhhhhcceeeeecccchHHHHHhccchhhhhh----
Q 007653          128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--------ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR----  195 (594)
Q Consensus       128 kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~--------eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~----  195 (594)
                      ++|+.+|.+.         .+|.+|+.++.++++++        +++++++++|+++|.|..+|+.|+.++..+++    
T Consensus       150 k~L~~dpkNy---------~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          150 GSLLPDPKNY---------HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHTSSCTTCH---------HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHhCCCCH---------HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccc
Confidence            9999999984         49999999999999999        99999999999999999999999999999987    


Q ss_pred             ---HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          196 ---LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       196 ---~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                         ++++++++++++.++|+|..++..+.-+....+.
T Consensus       221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence               7999999999999999999999998887666543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.58  E-value=2.1e-09  Score=106.55  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=84.9

Q ss_pred             HHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceee
Q 007653          102 AAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVL  173 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL  173 (594)
                      .+..+..+|..+..    .+++++|+.+|+++++..  +         ..+++++|.+|..    .+++++|+.+|++++
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~  141 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC  141 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---------ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence            46677888888888    888888888888888763  2         2367888888888    888888888888888


Q ss_pred             eecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          174 AYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       174 ~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      +++  ++.+++++|.+|..    .+++++|+.+|+++++.  ++..++..++.+...
T Consensus       142 ~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          142 DLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            765  67788888888887    88888888888888776  345666777776655

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.56  E-value=2.3e-08  Score=96.56  Aligned_cols=113  Identities=11%  Similarity=-0.005  Sum_probs=98.8

Q ss_pred             hHHHHHHHhcccccccc----cchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhccee
Q 007653          101 NAAKMLKKQGNELYSEG----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEV  172 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~A  172 (594)
                      ..+.++.++|..+.. +    ++++|+.+|+++++.  .+         ..+++++|.+|..    .+++++|+..|+++
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  115 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GS---------KSGEIVLARVLVNRQAGATDVAHAITLLQDA  115 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TC---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CC---------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence            356789999999988 7    899999999999764  34         2378999999998    88999999999999


Q ss_pred             eeecc--cchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          173 LAYDA--KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       173 L~ldP--~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                      +++.|  .++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus       116 ~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          116 ARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             TSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             HHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence            99988  579999999999998    88999999999999998 7788888888887654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.55  E-value=1.1e-08  Score=106.85  Aligned_cols=165  Identities=11%  Similarity=-0.000  Sum_probs=134.5

Q ss_pred             CchhhhhhhhhcCCChhHHHHHHHHhhcC-------ChH----HHHHHHHhhhhcccccchHHHHHHHhccccccccc--
Q 007653           52 PEDLKCAAEQLTHTPPEEVAEIGEKLANA-------SPE----EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR--  118 (594)
Q Consensus        52 pe~~~~a~e~l~~~~pee~~~~~~~~~~~-------~~~----el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~--  118 (594)
                      .+++......+....|+.......|...+       .++    .+.....-+...+..+++...+|..++.++...++  
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence            34556677777777787766655541111       111    13445555666677899999999999999988884  


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-chhhhhhcceeeeecccchHHHHHhccchhhh----
Q 007653          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI----  193 (594)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~l----  193 (594)
                      |.+++.+|.++|+.+|.+         ..+|.+|+.++..++. +++++++++++|+++|.|..+|++|+.++..+    
T Consensus       126 ~~~EL~~~~k~l~~dprN---------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          126 WARELELCARFLEADERN---------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            899999999999999998         4599999999999999 59999999999999999999999999999988    


Q ss_pred             ----------hhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          194 ----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       194 ----------g~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                                +.++++++++.+++.++|+|..+|..+.-+..
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                      78999999999999999999999986655543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.54  E-value=3.7e-09  Score=106.75  Aligned_cols=107  Identities=12%  Similarity=0.188  Sum_probs=89.3

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc---
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---  178 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~---  178 (594)
                      .+..+..+|..++..|+|++|+.+|.+++++....+..  ..+...+|+|+|.+|..+|+|++|+.+|++++++.+.   
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~  231 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence            46789999999999999999999999999654332210  0011258999999999999999999999999998754   


Q ss_pred             ---chHHHHHhccchhhhhhHHHH-hhhcccccccC
Q 007653          179 ---NVKALYRRGQAYKDIGRLEEA-VSDLSNAHEVS  210 (594)
Q Consensus       179 ---~~ka~~~rg~al~~lg~~~eA-i~~lekAl~l~  210 (594)
                         .+.+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus       232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence               378999999999999999999 77899998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.53  E-value=6.7e-10  Score=110.59  Aligned_cols=133  Identities=17%  Similarity=0.122  Sum_probs=109.6

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc-----------------
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------  161 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~-----------------  161 (594)
                      .+..+..+..+|..++..|+|++|+.+|.+++++.+....   ......++.++|.+|...|+                 
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            4556788999999999999999999999999998776532   11224478999999999999                 


Q ss_pred             ---chhhhhhcceeeee------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH
Q 007653          162 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI  226 (594)
Q Consensus       162 ---y~eAi~~~~~AL~l------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~------a~~~l~~a~~~  226 (594)
                         |++|+..+.+++.+      .+....+++.+|.+|...|++++|+.+|++++.+.+....      ++..++.+...
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence               99999999999877      4566789999999999999999999999999998776544      67777777777


Q ss_pred             hhhccCCC
Q 007653          227 LMKEDGHH  234 (594)
Q Consensus       227 l~~~~~a~  234 (594)
                      .++...+.
T Consensus       236 ~g~~~~A~  243 (338)
T 3ro2_A          236 LGEFETAS  243 (338)
T ss_dssp             HTCHHHHH
T ss_pred             cCCHHHHH
Confidence            76655443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.51  E-value=6.3e-09  Score=103.04  Aligned_cols=125  Identities=15%  Similarity=0.092  Sum_probs=105.5

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec--
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--  158 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k--  158 (594)
                      +..+...+......  ..+..+..+|..+..    .+++++|+.+|+++++..+..           +++++|.+|..  
T Consensus        94 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------a~~~lg~~~~~~~  160 (273)
T 1ouv_A           94 TNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGD-----------GCTILGSLYDAGR  160 (273)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHH-----------HHHHHHHHHHcCC
Confidence            34455555544443  367889999999999    999999999999999976333           78999999998  


Q ss_pred             --cccchhhhhhcceeeeecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          159 --TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       159 --lg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                        .+++++|+..|++++++  .++.+++++|.+|..    .+++++|+.+|++++++.|  ..++..++.+...
T Consensus       161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~  230 (273)
T 1ouv_A          161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN  230 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence              99999999999999976  568999999999999    9999999999999999866  6778888888776

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.51  E-value=3.8e-09  Score=106.65  Aligned_cols=128  Identities=14%  Similarity=0.036  Sum_probs=102.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee---cccc
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---DAKN  179 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l---dP~~  179 (594)
                      ...+...|..+...|+|++|+.+|.+++.+.+.....   .....+|.++|.+|..+|+|++|+..|.+++++   .|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence            3556778888999999999999999999876554221   112448899999999999999999999999944   4442


Q ss_pred             ----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCC
Q 007653          180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       180 ----~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~~a  233 (594)
                          +.+++++|.+|..+|+|++|+.+|++++.+.++.      ..++..++.+...+++.+.+
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence                3799999999999999999999999999886431      45677888888888766544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.51  E-value=1.6e-09  Score=107.74  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=109.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..+..+|..++..|+|++|+.+|.+++++.+....   ......++.++|.+|...|+|++|+..+++++.+.+.
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            4445678999999999999999999999999998766432   1112347899999999999999999999999998877


Q ss_pred             c------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCC
Q 007653          179 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       179 ~------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~------~a~~~l~~a~~~l~~~~~a  233 (594)
                      .      ..+++.+|.+|...|++++|+.+|++++.+.+...      .++..++.+....++...+
T Consensus       256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            6      88999999999999999999999999999876543      3666777777777665443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.50  E-value=9.3e-09  Score=87.36  Aligned_cols=99  Identities=23%  Similarity=0.286  Sum_probs=84.6

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhh
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      .+...+...+...+.....+..+|..++..|+|++|+..|.+++.+.|..+         .++++++.+|...+++++|+
T Consensus        27 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~~~~~~A~   97 (125)
T 1na0_A           27 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------EAWYNLGNAYYKQGDYDEAI   97 (125)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------HHHHHHHHHHHHhcCHHHHH
Confidence            344444444444556677899999999999999999999999999988874         37899999999999999999


Q ss_pred             hhcceeeeecccchHHHHHhccchhhhh
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYKDIG  194 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg  194 (594)
                      ..|++++.++|++..+++.++.++...|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           98 EYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.49  E-value=6e-09  Score=89.75  Aligned_cols=99  Identities=10%  Similarity=-0.031  Sum_probs=81.2

Q ss_pred             HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhh
Q 007653           89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV  168 (594)
Q Consensus        89 ~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~  168 (594)
                      ...+...+...++.+..+..+|..++..|+|++|+.+|.++++++|.+.         .+|+++|.||..+|++++|+..
T Consensus         5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS---------VAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH---------HHHHHHHHHHHHcCCHHHHHHH
Confidence            3345555566777788999999999999999999999999999999884         3899999999999999999999


Q ss_pred             cceeeeecccc--hHHHHHhccchhhhhhH
Q 007653          169 GSEVLAYDAKN--VKALYRRGQAYKDIGRL  196 (594)
Q Consensus       169 ~~~AL~ldP~~--~ka~~~rg~al~~lg~~  196 (594)
                      |+++++++|.+  ..++..+...+..+++.
T Consensus        76 ~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           76 WESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence            99999999864  44555555555555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.49  E-value=2.8e-09  Score=92.65  Aligned_cols=93  Identities=17%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccch---HHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR  221 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~---ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~---~~a~~~l~  221 (594)
                      +++++|.+++..|+|++|+..|+++++.+|++.   .+++.+|.+|...|+|++|+.+|++++.++|++   ..++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            578899999999999999999999999999998   899999999999999999999999999999999   77789999


Q ss_pred             HHHHHhhhccCCCCCccch
Q 007653          222 DAKEILMKEDGHHGPRGLL  240 (594)
Q Consensus       222 ~a~~~l~~~~~a~~~~~~~  240 (594)
                      .+...+++...+.......
T Consensus        84 ~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            9988887766544443333

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=1.3e-08  Score=94.23  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=93.6

Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc---cchhhhhhcceeeeec-c-cchHHHHHhcc
Q 007653          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD-A-KNVKALYRRGQ  188 (594)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg---~y~eAi~~~~~AL~ld-P-~~~ka~~~rg~  188 (594)
                      ........+.+.|.+.+...+...         .+.+++|.|+.+.+   +++++|..++.+++.+ | ++.+++|++|.
T Consensus         9 l~~~~l~~~~~~y~~e~~~~~~~~---------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAGSVSK---------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   79 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCH---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcH---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence            344556778888998888666553         37899999999988   8889999999999999 8 68999999999


Q ss_pred             chhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       189 al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +|+++|+|++|+++++++|+++|+|..+......+..++.+
T Consensus        80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998888754

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=1.1e-08  Score=86.09  Aligned_cols=97  Identities=8%  Similarity=0.003  Sum_probs=83.6

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+..+..+..+|..++..|+|++|+..|.+++++.|..+         .++.++|.+|..+|+|++
T Consensus        20 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~~~~~   90 (118)
T 1elw_A           20 IDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG---------KGYSRKAAALEFLNRFEE   90 (118)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH---------HHHHHHHHHHHHHhhHHH
Confidence            33444555555555666788999999999999999999999999999999874         388999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccch
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAY  190 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al  190 (594)
                      |+..+.++++++|++..+++.++.+.
T Consensus        91 A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           91 AKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            99999999999999999998887764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.47  E-value=1.4e-08  Score=106.80  Aligned_cols=134  Identities=8%  Similarity=-0.124  Sum_probs=122.5

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-c-cch
Q 007653           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-K-QYD  163 (594)
Q Consensus        87 aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-g-~y~  163 (594)
                      .+...+...+..+++...++..++.++...+ ++++++..+.++|..+|.+.         .+|+.|+.|+..+ + +++
T Consensus        72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny---------~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY---------QVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH---------HHHHHHHHHHHHHCCSCCH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHhcCCChH
Confidence            3556667777889999999999999998888 59999999999999999984         4899999999998 7 999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHH--------HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--------EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~--------eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +++..|+++|+++|+|..+|+.|+.++..+++++        +++++++++++++|.|..++..++.+...++.
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999998        99999999999999999999999998777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.47  E-value=9.4e-09  Score=104.91  Aligned_cols=147  Identities=10%  Similarity=0.049  Sum_probs=122.8

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHh-------cccccccccchhHHHHHHHhhhccccccccccceeeeeeccc---
Q 007653           82 PEEIATMRARIDAQMNYEFNAAKMLKKQ-------GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN---  151 (594)
Q Consensus        82 ~~el~aa~~~~~a~~~~~~~~a~~l~~~-------Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N---  151 (594)
                      +.+...+...+.+.....+..+.+|..+       +.++...+++.+++..|.+++.+.|..-.         ++++   
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~---------a~~~~~g   89 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN---------ARIAIGG   89 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC---------CEEECCT
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh---------hhhccCC
Confidence            4455667777777888889999999999       89999999999999999999999998743         4455   


Q ss_pred             ------------------CceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCC-
Q 007653          152 ------------------SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-  212 (594)
Q Consensus       152 ------------------~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~-  212 (594)
                                        ++.+|...|+|++|++.|+.++..+|++. ++|.+|.++...++|++|+.+|++++...+. 
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                              55778899999999999999999999999 9999999999999999999999988876322 


Q ss_pred             C-ChHHHHHhHHHHHhhhccCCCCCcc
Q 007653          213 D-GTIADVLRDAKEILMKEDGHHGPRG  238 (594)
Q Consensus       213 ~-~~a~~~l~~a~~~l~~~~~a~~~~~  238 (594)
                      + ..++..++.+...+++..++...+.
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~  195 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLT  195 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            1 3488899999888887665544433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.47  E-value=3.3e-09  Score=94.03  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=90.8

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc----
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----  177 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP----  177 (594)
                      .+..+..+|..++..|+|++|+.+|.+++.+.+....   ......++.++|.+|...|+|++|+..+.+++.+.+    
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  124 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  124 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence            3568999999999999999999999999998765422   112245789999999999999999999999998743    


Q ss_pred             --cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          178 --KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       178 --~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                        ....+++.+|.+|..+|++++|+.+|++++++..
T Consensus       125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence              3477899999999999999999999999987643

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.46  E-value=2.1e-08  Score=104.73  Aligned_cols=132  Identities=7%  Similarity=-0.101  Sum_probs=117.7

Q ss_pred             HHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        88 a~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      +...+...+..+++...++..++.++...++          +.+++.++.++|..+|.+.         .+|++|+.++.
T Consensus        49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny---------~aW~hR~wlL~  119 (331)
T 3dss_A           49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY---------GTWHHRCWLLS  119 (331)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHh
Confidence            4455566667788888888888888877665          7899999999999999985         48999999999


Q ss_pred             cccc--chhhhhhcceeeeecccchHHHHHhccchhhhhh-HHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          158 KTKQ--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       158 klg~--y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~-~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      .+++  |++++.+|+++|++||.|..+|+.|+.++..+|. ++++++++++++.++|.|..+|..+..+...+.
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            9994  8999999999999999999999999999999999 699999999999999999999999999888774

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=1.7e-08  Score=89.06  Aligned_cols=99  Identities=9%  Similarity=-0.015  Sum_probs=85.4

Q ss_pred             HHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc
Q 007653           84 EIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~---a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg  160 (594)
                      ++..+...+...+...++.   ...+..+|..++..|+|++|+.+|.+++++.|.++         .+|+++|.||..++
T Consensus        43 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~~  113 (148)
T 2dba_A           43 DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV---------KALYRRSQALEKLG  113 (148)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH---------HHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH---------HHHHHHHHHHHHcC
Confidence            4455666666666666665   88999999999999999999999999999998874         48899999999999


Q ss_pred             cchhhhhhcceeeeecccchHHHHHhccchh
Q 007653          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (594)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~  191 (594)
                      +|++|+..|.++++++|++..++..++.+..
T Consensus       114 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          114 RLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999999999999999999998887776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.43  E-value=2.3e-08  Score=96.49  Aligned_cols=112  Identities=10%  Similarity=-0.013  Sum_probs=99.0

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc----cchhhhhhcceeeeec
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----QYDECIKVGSEVLAYD  176 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg----~y~eAi~~~~~AL~ld  176 (594)
                      ..+.++..+|..++..+++++|+.+|+++++..  +         ..+++++|.+|.. +    ++++|+.+|++++  +
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~---------~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~   81 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D---------GDALALLAQLKIR-NPQQADYPQARQLAEKAV--E   81 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--H
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--H
Confidence            457789999999999999999999999998853  3         2378999999998 7    9999999999995  6


Q ss_pred             ccchHHHHHhccchhh----hhhHHHHhhhcccccccCCC--CChHHHHHhHHHHH
Q 007653          177 AKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEI  226 (594)
Q Consensus       177 P~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~--~~~a~~~l~~a~~~  226 (594)
                      +.++.+++++|.+|..    .+++++|+.+|+++++..|.  ++.++..|+.+...
T Consensus        82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            7899999999999998    88999999999999999883  57888888888665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.43  E-value=7e-09  Score=96.97  Aligned_cols=113  Identities=14%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP  177 (594)
                      ..+..+..+..+|..+...|+|++|+.+|.+++.+....+..  ......++.++|.+|..+|+|++|+..+++++.+.+
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            455667889999999999999999999999999984432210  001245789999999999999999999999997643


Q ss_pred             c------chHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007653          178 K------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (594)
Q Consensus       178 ~------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~  212 (594)
                      .      ...+++++|.+|..+|++++|+.+|++++.+...
T Consensus       139 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          139 QADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            2      2446789999999999999999999999987544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.39  E-value=1.9e-08  Score=85.23  Aligned_cols=73  Identities=10%  Similarity=-0.018  Sum_probs=65.9

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      .++.+..+..+|.+++..|+|++|+.+|+++++++|.++.         +|+++|.||..+|+|++|+..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------TYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4566789999999999999999999999999999999854         8999999999999999999999999999876


Q ss_pred             ch
Q 007653          179 NV  180 (594)
Q Consensus       179 ~~  180 (594)
                      +.
T Consensus        74 ~~   75 (100)
T 3ma5_A           74 EG   75 (100)
T ss_dssp             HS
T ss_pred             CC
Confidence            53

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.35  E-value=7.4e-08  Score=105.51  Aligned_cols=136  Identities=6%  Similarity=-0.081  Sum_probs=98.8

Q ss_pred             HHHHHHHhhhhcccccchH-HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCcee-eecccc
Q 007653           84 EIATMRARIDAQMNYEFNA-AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQ  161 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~-a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~~klg~  161 (594)
                      +++.+...+.+.+...+.. ...|...|..+.+.|++++|+..|.++++..|....         +|...+.+ |...|+
T Consensus       336 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~---------~~~~~a~~~~~~~~~  406 (530)
T 2ooe_A          336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKD  406 (530)
T ss_dssp             CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH---------HHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH---------HHHHHHHHHHHHcCC
Confidence            3445666666666666554 357888888888888888888888888887665421         33333322 346888


Q ss_pred             chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh----HHHHHhHHHHHhh
Q 007653          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEILM  228 (594)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~----a~~~l~~a~~~l~  228 (594)
                      +++|+..|+++|+++|+++.+|..++..+..+|++++|...|++++...|.++.    ++..+...+...+
T Consensus       407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G  477 (530)
T 2ooe_A          407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  477 (530)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred             hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence            899999999999999999999999999888899999999999999888776654    5555444444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.34  E-value=1.7e-08  Score=110.61  Aligned_cols=136  Identities=6%  Similarity=-0.143  Sum_probs=115.9

Q ss_pred             HHHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhh
Q 007653           87 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus        87 aa~~~~~a~~~-~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      .+...+...+. ..++....+...+..+.+.|++++|+..|++++++.|.++        ..+|++++.++.+.|++++|
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------TLVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------hHHHHHHHHHHHHhcCHHHH
Confidence            45566666665 5788899999999999999999999999999999988763        13789999999999999999


Q ss_pred             hhhcceeeeecccchHHHHHhccc-hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~a-l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      +..|.+|++..|.+...++..+.. +...|++++|+..|+++++++|+++.++..+..+...+++.
T Consensus       376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH
Confidence            999999999999888888776655 34689999999999999999999999998888876655443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.31  E-value=2.4e-08  Score=109.70  Aligned_cols=128  Identities=13%  Similarity=0.095  Sum_probs=99.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee-------
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------  175 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l-------  175 (594)
                      +..+.+.+..+..+|+|++|+..|+++|++....-. ..+...+..+.|+|.+|..+|+|++|+..|.++|++       
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  387 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH  387 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            334455566677899999999999999987544321 122334668899999999999999999999999976       


Q ss_pred             -cccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHH---HHHhHHHHHhhhcc
Q 007653          176 -DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIA---DVLRDAKEILMKED  231 (594)
Q Consensus       176 -dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-----~P~~~~a~---~~l~~a~~~l~~~~  231 (594)
                       +|+-+..++++|.+|..+|+|++|+..|++|+++     -|+++.+.   ..+..++..++.++
T Consensus       388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~  452 (490)
T 3n71_A          388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR  452 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence             4667889999999999999999999999999985     46665544   45666665555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.28  E-value=4.1e-08  Score=84.18  Aligned_cols=109  Identities=14%  Similarity=0.120  Sum_probs=86.2

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      +..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|..+.  .......+|+++|.+|...|+|++
T Consensus        20 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~   97 (131)
T 1elr_A           20 FDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE--DYRQIAKAYARIGNSYFKEEKYKD   97 (131)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch--hHHHHHHHHHHHHHHHHHhccHHH
Confidence            344555555555556667889999999999999999999999999999886521  000113378999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhH
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  196 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~  196 (594)
                      |+..|.++++++| +...+..++.++..+++.
T Consensus        98 A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           98 AIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            9999999999998 688888888887776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.16  E-value=1.4e-07  Score=102.13  Aligned_cols=112  Identities=13%  Similarity=0.213  Sum_probs=88.7

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--------cccch
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DAKNV  180 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--------dP~~~  180 (594)
                      .+......|+|++|+..|+++|++....-. ..+...+..+.|+|.+|..+|+|++|+..|+++|++        +|+-+
T Consensus       304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  382 (433)
T 3qww_A          304 EFRRAKHYKSPSELLEICELSQEKMSSVFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA  382 (433)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHhhCccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            333445678999999999999986543211 122334568899999999999999999999999976        57778


Q ss_pred             HHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHHHHh
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVLR  221 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l-----~P~~~~a~~~l~  221 (594)
                      ..|+++|.+|..+|+|++|+..|++|+++     -|+++.+.....
T Consensus       383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~  428 (433)
T 3qww_A          383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ  428 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence            89999999999999999999999999886     467766555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.13  E-value=2.9e-07  Score=83.13  Aligned_cols=98  Identities=11%  Similarity=-0.038  Sum_probs=83.8

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeeeecccchHHHH
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      +|..+...+.+++|+.+|+++.+..  +         ..+++++|.+|..    .+++++|+.+|+++.+.  .++.+++
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g--~---------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~   97 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN--S---------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL   97 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC--C---------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence            8989998889999999999999863  3         2378999999998    89999999999999865  7899999


Q ss_pred             Hhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          185 RRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       185 ~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                      ++|.+|..    .+++++|+.+|++|.+.  .++.+...|+
T Consensus        98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           98 ILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            99999999    89999999999999887  3445544443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.13  E-value=1.2e-07  Score=98.06  Aligned_cols=126  Identities=12%  Similarity=0.018  Sum_probs=97.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec------
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  176 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld------  176 (594)
                      +..+..+|..++..|+|++|+.+|.+++.+.+.....   .....++.++|.+|...|+|++|+..|++++++.      
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            4567888999999999999999999999987765320   0113356889999999999999999999999876      


Q ss_pred             --ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-----hHHHHHhHHHHHhhhcc
Q 007653          177 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-----TIADVLRDAKEILMKED  231 (594)
Q Consensus       177 --P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~-----~a~~~l~~a~~~l~~~~  231 (594)
                        |....+++++|.+|...|++++|+.+|++++.+.+...     .++..++.+....++..
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~  191 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLD  191 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHH
Confidence              44567888899999999999999999999998887632     24455555555554443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.10  E-value=1.6e-07  Score=101.47  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=90.8

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--------c
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------D  176 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--------d  176 (594)
                      .+...-..+..+|+|++|+..|+++|++....- ...+...+..+.|++.+|..+|+|++|+..|.++|.+        +
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            334444456778999999999999998654321 1123334668899999999999999999999999966        4


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHHHH
Q 007653          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVL  220 (594)
Q Consensus       177 P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-----~P~~~~a~~~l  220 (594)
                      |.-+..++++|.+|..+|+|++|+..|++|+++     -|+++.+...+
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  416 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI  416 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            667889999999999999999999999999885     46776555443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.08  E-value=4.3e-07  Score=76.98  Aligned_cols=68  Identities=13%  Similarity=-0.022  Sum_probs=60.7

Q ss_pred             ecccCceeeecccc---chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          148 CSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       148 ~~~N~a~~~~klg~---y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      ++..+|.+++..++   ..+|...++++|++||+++.+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            56667777765544   799999999999999999999999999999999999999999999999999544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.03  E-value=1.5e-06  Score=93.77  Aligned_cols=126  Identities=13%  Similarity=0.049  Sum_probs=105.4

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhccccccc----ccchhHHHHHHHhhhccccccccccceeeeeecccCcee-e-
Q 007653           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-Y-  156 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~-~-  156 (594)
                      .+...+...+.+........+..+.++|..|...    +++++|+.+|++++   |.++.         +++++|.+ | 
T Consensus       193 ~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---------a~~~Lg~~~~~  260 (452)
T 3e4b_A          193 EQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---------SWVSLAQLLYD  260 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---------HHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---------HHHHHHHHHHh
Confidence            3566677777777777777777778899888665    79999999999998   66643         78999998 4 


Q ss_pred             -eccccchhhhhhcceeeeecccchHHHHHhccchhhhh-----hHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          157 -LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       157 -~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-----~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                       ...+++++|+.+|++++  ++.++.+++++|.+|. .|     ++++|+.+|++|+   |.++.+...|+.+...
T Consensus       261 ~~~~~d~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          261 FPELGDVEQMMKYLDNGR--AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             SGGGCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence             57899999999999998  4569999999999998 66     9999999999999   8899999999987654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.01  E-value=4.9e-07  Score=77.61  Aligned_cols=82  Identities=16%  Similarity=0.063  Sum_probs=72.5

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeec-------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ld-------P~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l  220 (594)
                      .++.+|..++..++|..|+..|++|+++.       +..+..++.+|.||..+|++++|+..++++++++|++..+..++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            35788999999999999999999999864       35688999999999999999999999999999999999998888


Q ss_pred             hHHHHHhhh
Q 007653          221 RDAKEILMK  229 (594)
Q Consensus       221 ~~a~~~l~~  229 (594)
                      ...+..+..
T Consensus        87 ~~~~~~~~~   95 (104)
T 2v5f_A           87 KYFEYIMAK   95 (104)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            876665543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.99  E-value=4.8e-07  Score=99.42  Aligned_cols=110  Identities=7%  Similarity=-0.055  Sum_probs=92.0

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee--
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--  175 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l--  175 (594)
                      .++..+..+.++|..|..+|+|++|+.+|+++|++....-. +.+...+..++|+|.+|..+|+|++|+..|.+|+++  
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999986532211 122334668999999999999999999999999976  


Q ss_pred             ------cccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007653          176 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (594)
Q Consensus       176 ------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~  208 (594)
                            +|.-.+.+-.++.++..++.|.+|...|.++.+
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  355677788999999999999999999987643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.99  E-value=4.3e-07  Score=77.99  Aligned_cols=83  Identities=12%  Similarity=0.032  Sum_probs=70.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +..++.+|..++..++|..|+..|++|++..+....  .......++.++|.||+++|++++|+..+.++++++|++..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~--~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC--CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            456889999999999999999999999987643311  011224578999999999999999999999999999999999


Q ss_pred             HHHhc
Q 007653          183 LYRRG  187 (594)
Q Consensus       183 ~~~rg  187 (594)
                      +.+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            88887

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.97  E-value=7.4e-07  Score=82.45  Aligned_cols=101  Identities=9%  Similarity=-0.006  Sum_probs=83.2

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc---cchhHHHHHHHhhhcc-ccccccccceeeeeecccCceee
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCY  156 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g---~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~N~a~~~  156 (594)
                      .++++..+..+|...+.......+..++.|..+.+.+   ++.++|..+++.++.+ |...        ..|++++|..|
T Consensus        10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~--------rd~lY~LAv~~   81 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ--------RDYVFYLAVGN   81 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH--------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch--------HHHHHHHHHHH
Confidence            4555666777777776666677899999999999988   7889999999999987 5221        23899999999


Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a  189 (594)
                      +++++|.+|+++|+++|+++|+|..+..-+-.+
T Consensus        82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            999999999999999999999998876655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.84  E-value=5.2e-06  Score=89.61  Aligned_cols=111  Identities=16%  Similarity=0.061  Sum_probs=69.2

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccc---hhhhhhcceeeeecccchHHH
Q 007653          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY---DECIKVGSEVLAYDAKNVKAL  183 (594)
Q Consensus       107 ~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y---~eAi~~~~~AL~ldP~~~ka~  183 (594)
                      ..+|..+++.|+|++|+..|+++++.  .++         .+++++|.+|+..|++   ++|+..|+++++.   ++.++
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~---------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~   72 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYS---------EAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQ   72 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCC---------TGGGTCC-------------------------------CH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCH---------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHH
Confidence            34678889999999999999999875  332         3789999999999999   9999999999976   88999


Q ss_pred             HHhccchhhhh-----hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          184 YRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       184 ~~rg~al~~lg-----~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      +++|.++...+     ++++|+.+|++++.  +.++.++..|+.+..........
T Consensus        73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~~~~~~~~  125 (452)
T 3e4b_A           73 ARLGRLLAAKPGATEAEHHEAESLLKKAFA--NGEGNTLIPLAMLYLQYPHSFPN  125 (452)
T ss_dssp             HHHHHHHHTC--CCHHHHHHHHHHHHHHHH--TTCSSCHHHHHHHHHHCGGGCTT
T ss_pred             HHHHHHHHhCCCCCCcCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhCCCCCCC
Confidence            99999776655     89999999999987  55667888999888776654443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.76  E-value=5.4e-07  Score=93.11  Aligned_cols=126  Identities=10%  Similarity=-0.014  Sum_probs=99.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc---
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~---  179 (594)
                      .+.+...|..++..|++++|+.+|.+++...|....    .....++.+++.+|...|+|++|+..+.+++.+.|..   
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            456778888999999999999999999998765421    1123367899999999999999999999999987654   


Q ss_pred             ---hHHHHHhccchhhhhhHHHHhhhcccccccCC--------CCChHHHHHhHHHHHhhhccC
Q 007653          180 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--------DDGTIADVLRDAKEILMKEDG  232 (594)
Q Consensus       180 ---~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P--------~~~~a~~~l~~a~~~l~~~~~  232 (594)
                         ..+++++|.+|...|+|++|+.+|++++.+.+        ....++..++.+....++...
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  153 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  153 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence               34578999999999999999999999998763        223455566776666655443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.74  E-value=4e-06  Score=90.72  Aligned_cols=73  Identities=14%  Similarity=0.051  Sum_probs=34.4

Q ss_pred             ecccCceeeeccc---cchhhhhhcceeeeecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHH
Q 007653          148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (594)
Q Consensus       148 ~~~N~a~~~~klg---~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l  220 (594)
                      +++++|.+|...+   ++++|+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++.  .++.++..+
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~L  405 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQL  405 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHH
Confidence            3444555444433   445555555555433  344555555555544    44555555555555443  234444444


Q ss_pred             hHHH
Q 007653          221 RDAK  224 (594)
Q Consensus       221 ~~a~  224 (594)
                      +.+.
T Consensus       406 g~~y  409 (490)
T 2xm6_A          406 GEIY  409 (490)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.73  E-value=4.6e-06  Score=74.58  Aligned_cols=101  Identities=13%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh---hhhhcceeeeec-c-cchHHHHHhccchhhhh
Q 007653          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE---CIKVGSEVLAYD-A-KNVKALYRRGQAYKDIG  194 (594)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e---Ai~~~~~AL~ld-P-~~~ka~~~rg~al~~lg  194 (594)
                      ..+...|.+.+...+..         ..+.+++|.|+.+......   +|..++..++.+ | ..-+++|.+|.+++++|
T Consensus        18 ~~~~~~y~~e~~~~~~s---------~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVS---------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHSCCC---------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCc---------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence            44556676666544433         2366788888888776665   999999988887 6 68899999999999999


Q ss_pred             hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       195 ~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +|++|+.+++..|+++|+|..+......++.++.+
T Consensus        89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           89 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988887754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.70  E-value=6.1e-06  Score=89.24  Aligned_cols=107  Identities=13%  Similarity=0.005  Sum_probs=52.5

Q ss_pred             HHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeee
Q 007653          103 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLA  174 (594)
Q Consensus       103 a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~  174 (594)
                      +.++..+|..+..    .+++++|+.+|+++++..  +         ..+++++|.+|..    .+++++|+..|+++++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~---------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~  179 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--R---------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE  179 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            3444555555544    455555555555554432  1         1144555555554    4455555555555543


Q ss_pred             ecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          175 YDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       175 ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      .  .++.+++++|.+|..    .+++++|+.+|+++++.  .++.++..++.+.
T Consensus       180 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y  229 (490)
T 2xm6_A          180 Q--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMY  229 (490)
T ss_dssp             T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            3  345555555555554    55555555555555443  2344444444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.70  E-value=1.9e-05  Score=94.82  Aligned_cols=107  Identities=15%  Similarity=0.118  Sum_probs=91.2

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc------
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA------  177 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP------  177 (594)
                      ..+...|..++..|+|++|+.+|.++-                 .|..++.||.++|+|++|++.+.+|...++      
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA~-----------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNVS-----------------NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 1258 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhhh-----------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            456689999999999999999999972                 478999999999999999999999965544      


Q ss_pred             -------------------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          178 -------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       178 -------------------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                                         .+++.+..++..|...|+|++|+..|++++.++|.+...+..++.+..+.
T Consensus      1259 acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                               24556667788889999999999999999999999998888888775543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.68  E-value=6.7e-06  Score=86.23  Aligned_cols=125  Identities=9%  Similarity=0.021  Sum_probs=96.1

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee------cc
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DA  177 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l------dP  177 (594)
                      ..+..+|.++...|++++|+.+|.+++.+.+....   ..+...++.++|.+|...|+|.+|+..+.+++..      .+
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence            44566788888999999999999999887655422   2233557889999999999999999999988765      45


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      ..+.++...|.+|..+|+|++|...|++++.+.+.........+.+...++...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~  226 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH  226 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence            668899999999999999999999999999886654433334444444444433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.68  E-value=4.3e-05  Score=91.87  Aligned_cols=60  Identities=20%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             eecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       147 ~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                      .+|+++|.++...|+|++|+..|.++     +++.+|++.+.++.++|+|++|+++|..|.+..+
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Confidence            47788888888888888888888665     7778888888888888888888888888777763

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.65  E-value=7.3e-06  Score=84.61  Aligned_cols=124  Identities=10%  Similarity=-0.018  Sum_probs=94.1

Q ss_pred             HHHHHhhhhcccccc------hHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           86 ATMRARIDAQMNYEF------NAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~------~~a~~l~~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      +.|.+.+.+-.+..+      +........+.+.+..|  +|.+|...|++..+..|....       ...++|   |+.
T Consensus       153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~-------~~lLln---~~~  222 (310)
T 3mv2_B          153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT-------QLGLLN---LHL  222 (310)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH-------HHHHHH---HHH
T ss_pred             HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc-------HHHHHH---HHH
Confidence            345555554444444      44455555565555555  999999999999888775211       124455   899


Q ss_pred             ccccchhhhhhcceeeee----------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007653          158 KTKQYDECIKVGSEVLAY----------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (594)
Q Consensus       158 klg~y~eAi~~~~~AL~l----------dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~  221 (594)
                      ++|+|++|..+++.++++          +|+++.++.++..+...+|+  +|.++++++..++|+++-+.....
T Consensus       223 ~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~  294 (310)
T 3mv2_B          223 QQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE  294 (310)
T ss_dssp             HHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence            999999999999988887          58899999999999999997  899999999999999987765443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.62  E-value=1.1e-05  Score=87.03  Aligned_cols=105  Identities=15%  Similarity=0.113  Sum_probs=73.6

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch---
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---  180 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~---  180 (594)
                      ..+...|+.++..|+|++|+.+|.++                 ..|.+++.|+.++|+|++|++.|.++.  +|.-.   
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v  183 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEV  183 (449)
T ss_dssp             --------------CTTTHHHHHHHT-----------------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-----------------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHH
Confidence            48999999999999999999999987                 147899999999999999999999994  34211   


Q ss_pred             -HHHHH-----------------------hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          181 -KALYR-----------------------RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       181 -ka~~~-----------------------rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                       .++..                       +...|...|++++|+..|++++.+++.+..++..++.+..+.
T Consensus       184 ~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          184 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence             22222                       336788999999999999999999999998888888775544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.58  E-value=1.6e-05  Score=80.94  Aligned_cols=90  Identities=10%  Similarity=-0.040  Sum_probs=80.4

Q ss_pred             ccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc-----ccchhhhhhcceeeeecccc-hHHHHHhccch
Q 007653          117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----KQYDECIKVGSEVLAYDAKN-VKALYRRGQAY  190 (594)
Q Consensus       117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl-----g~y~eAi~~~~~AL~ldP~~-~ka~~~rg~al  190 (594)
                      +....|...++++|+++|....       ..+|..+|..|.+.     |+.++|.++|++||+++|+. +..++..|..|
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~-------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l  249 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQE-------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADAL  249 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHH-------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHT
T ss_pred             HhHHHHHHHHHHHHHhCCCccc-------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence            3457899999999999999533       45899999999995     99999999999999999975 99999999999


Q ss_pred             hhh-hhHHHHhhhcccccccCCCC
Q 007653          191 KDI-GRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       191 ~~l-g~~~eAi~~lekAl~l~P~~  213 (594)
                      +.. |++++|..++++|+.++|..
T Consensus       250 ~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          250 CIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHhcCCHHHHHHHHHHHHcCCCCC
Confidence            885 99999999999999998874

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.57  E-value=1.4e-05  Score=71.86  Aligned_cols=94  Identities=14%  Similarity=0.028  Sum_probs=82.2

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh---
Q 007653          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD---  192 (594)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~---  192 (594)
                      .+++++|+.+|+++.+.....           ++  +|.+|...+.+++|+.+|+++++.  .++.+++++|.+|..   
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~-----------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g   72 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF-----------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY   72 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT-----------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS
T ss_pred             ccCHHHHHHHHHHHHcCCCHh-----------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCC
Confidence            468999999999999875333           33  999999999999999999999865  789999999999998   


Q ss_pred             -hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          193 -IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       193 -lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                       .+++++|+.+|++|.+.  .++.+...|+.+...
T Consensus        73 ~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           73 VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence             89999999999999886  678888888887654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.54  E-value=3e-05  Score=81.72  Aligned_cols=126  Identities=10%  Similarity=0.027  Sum_probs=91.5

Q ss_pred             cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-------chhHHH-HHH--Hhhhccccccccccceeeeee
Q 007653           79 NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-------FSNALQ-KYL--LAKKNLQGIHSSEGRTLLLAC  148 (594)
Q Consensus        79 ~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~-------y~eAi~-~Y~--kAL~l~p~~~~~e~~~l~~~~  148 (594)
                      ...++.+..+...+.+.++..|+.+.++-.++.+++....       ...++. .+.  .++..+|..+         .+
T Consensus       209 ~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a---------~~  279 (372)
T 3ly7_A          209 HGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS---------II  279 (372)
T ss_dssp             HCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH---------HH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH---------HH
Confidence            3456677777777888888777777666666655532111       111111 122  2234445553         36


Q ss_pred             cccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      |.-++.++...|++++|+..+++||.++|+ +.+|..+|.++...|++++|++.|++|+.++|..+
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            666777777789999999999999999975 67889999999999999999999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.37  E-value=5.9e-06  Score=86.63  Aligned_cols=128  Identities=5%  Similarity=-0.067  Sum_probs=99.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc-----
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-----  177 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP-----  177 (594)
                      ..++.++|..|+..|+|++|+.+|.+++.+.+.....   .....++.+++.++...+++++|+..|.+++.+.+     
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            4578999999999999999999999999987765321   01123566788999999999999999999987643     


Q ss_pred             -cchHHHHHhccchhhhhhHHHHhhhcccccccCCC------CChHHHHHhHHHHHhhhccCC
Q 007653          178 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------DGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       178 -~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~------~~~a~~~l~~a~~~l~~~~~a  233 (594)
                       ..+..+.++|.+|...|+|++|+..+++++.....      ..+++..++.+...++++..+
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  194 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKS  194 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHH
Confidence             45789999999999999999999999988765322      234666666666666655443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.27  E-value=1.8e-05  Score=66.81  Aligned_cols=71  Identities=13%  Similarity=-0.032  Sum_probs=61.7

Q ss_pred             chHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec
Q 007653          100 FNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld  176 (594)
                      ++.++.+..+|..++..++   ..+|..+|.++|.++|.++.         +++.+|..+++.|+|++|+..++++++.+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------ALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4557788888888865554   79999999999999999954         88899999999999999999999999999


Q ss_pred             ccc
Q 007653          177 AKN  179 (594)
Q Consensus       177 P~~  179 (594)
                      |..
T Consensus        74 p~~   76 (93)
T 3bee_A           74 DPN   76 (93)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.12  E-value=6.2e-05  Score=77.65  Aligned_cols=133  Identities=8%  Similarity=-0.094  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhcccc-----ccccccceeeeeecccCcee
Q 007653           83 EEIATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-----IHSSEGRTLLLACSLNSMSC  155 (594)
Q Consensus        83 ~el~aa~~~~~a~~~~~~--~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-----~~~~e~~~l~~~~~~N~a~~  155 (594)
                      .+++.|...+++.+...+  ...+.+...+.++++.|+++.|.+.+++..+.+|+     +.          ..++++.+
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~----------~l~~Laea  183 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE----------MILNLAES  183 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH----------HHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH----------HHHHHHHH
Confidence            345567676666656554  78888999999999999999999999999888872     32          34555544


Q ss_pred             --eeccc--cchhhhhhcceeeeeccc--chHHHHHhccchhhhhhHHHHhhhccccccc----------CCCCChHHHH
Q 007653          156 --YLKTK--QYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV----------SPDDGTIADV  219 (594)
Q Consensus       156 --~~klg--~y~eAi~~~~~AL~ldP~--~~ka~~~rg~al~~lg~~~eAi~~lekAl~l----------~P~~~~a~~~  219 (594)
                        .+..|  +|.+|+..|++++...|+  ....+++   ++..+|+|++|...++..+++          +|+++.+..+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence              44445  999999999999888887  4556666   899999999999999988877          5888888877


Q ss_pred             HhHHHHHhh
Q 007653          220 LRDAKEILM  228 (594)
Q Consensus       220 l~~a~~~l~  228 (594)
                      +..+...++
T Consensus       261 ~i~l~~~lg  269 (310)
T 3mv2_B          261 QITLALMQG  269 (310)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            766655554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.01  E-value=0.00021  Score=75.30  Aligned_cols=169  Identities=10%  Similarity=0.043  Sum_probs=108.0

Q ss_pred             hHHHHHHHHhcChh---HHHHhhhhhccCCCchhhhhhhh---hcCCChhHHHHHHHHhhc---------CChHHHHHHH
Q 007653           25 DFARIQQQMMANPE---LMRIATENMKNMRPEDLKCAAEQ---LTHTPPEEVAEIGEKLAN---------ASPEEIATMR   89 (594)
Q Consensus        25 ~l~r~~~~m~~~p~---l~r~A~e~mk~~~pe~~~~a~e~---l~~~~pee~~~~~~~~~~---------~~~~el~aa~   89 (594)
                      +..+..+..-.|++   +.-++...+...+++++.++.+.   ....+|+.........+.         ........+.
T Consensus       182 e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~  261 (372)
T 3ly7_A          182 MQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN  261 (372)
T ss_dssp             HHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence            34444444444554   33335555666677666654433   345566644433322111         1111222221


Q ss_pred             Hhhh--hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhh
Q 007653           90 ARID--AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (594)
Q Consensus        90 ~~~~--a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~  167 (594)
                      ..+.  ..+...+..+..+..++..++..|++++|+..+++|+.++|..          ..|.-+|.++.-.|++++|++
T Consensus       262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~----------~a~~llG~~~~~~G~~~eA~e  331 (372)
T 3ly7_A          262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW----------LNYVLLGKVYEMKGMNREAAD  331 (372)
T ss_dssp             HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHCCCHHHHHH
Confidence            1121  2334456778888888888888999999999999999998643          367788999999999999999


Q ss_pred             hcceeeeecccchHHHHHhccchh-hhhhHHHHhhhc
Q 007653          168 VGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDL  203 (594)
Q Consensus       168 ~~~~AL~ldP~~~ka~~~rg~al~-~lg~~~eAi~~l  203 (594)
                      .|.+|+.++|.....++....+++ .+...+-++..|
T Consensus       332 ~~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~  368 (372)
T 3ly7_A          332 AYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF  368 (372)
T ss_dssp             HHHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHH
T ss_pred             HHHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhc
Confidence            999999999998776666655553 555555555444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.97  E-value=8.5e-05  Score=66.36  Aligned_cols=100  Identities=9%  Similarity=-0.015  Sum_probs=79.7

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh---HHHHHHHhhhcc-ccccccccceeeeeecccCceee
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN---ALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCY  156 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~e---Ai~~Y~kAL~l~-p~~~~~e~~~l~~~~~~N~a~~~  156 (594)
                      .++++..+..+|...+.......+..++.+..+.+..+..+   +|..++..+... |...        -.|.+.+|..|
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~--------Rd~lY~LAvg~   84 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ--------RDYVFYLAVGN   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH--------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHH
Confidence            34556667777777766556778889999999988877766   999999998875 4221        34889999999


Q ss_pred             eccccchhhhhhcceeeeecccchHHHHHhcc
Q 007653          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (594)
Q Consensus       157 ~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~  188 (594)
                      +++|+|.+|+.+++..|+++|+|..+...+..
T Consensus        85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999887655443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.95  E-value=0.00011  Score=66.13  Aligned_cols=81  Identities=11%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             cccCceeeeccc---cchhhhhhcceeeeecc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007653          149 SLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (594)
Q Consensus       149 ~~N~a~~~~klg---~y~eAi~~~~~AL~ldP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~  224 (594)
                      .+|.|.|+.+..   +..++|..++..++.+| ..-+++|.+|.+++++|+|++|+.+++.+|+++|+|..+......++
T Consensus        43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            344444444443   55678888888888888 46889999999999999999999999999999999999999999988


Q ss_pred             HHhhh
Q 007653          225 EILMK  229 (594)
Q Consensus       225 ~~l~~  229 (594)
                      .++.+
T Consensus       123 ~ki~k  127 (134)
T 3o48_A          123 DKIQK  127 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.88  E-value=7.9e-05  Score=80.31  Aligned_cols=94  Identities=7%  Similarity=-0.039  Sum_probs=71.5

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec-
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-  176 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld-  176 (594)
                      .++..+..+.++|..|..+|+|++|+.+|+++|.+....- .+.+...+..++|+|.+|..+|+|++|+..|.+|+++- 
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999999998653221 11223346689999999999999999999999999762 


Q ss_pred             ----ccc---hHHHHHhccchhh
Q 007653          177 ----AKN---VKALYRRGQAYKD  192 (594)
Q Consensus       177 ----P~~---~ka~~~rg~al~~  192 (594)
                          |++   .+.+.+++.++..
T Consensus       403 ~~lG~~Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          403 VTHGREHSLIEDLILLLEECDAN  425 (429)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHH
Confidence                333   4444445555443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.67  E-value=0.0003  Score=63.96  Aligned_cols=82  Identities=11%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             ecccCceeeeccc---cchhhhhhcceeeeecc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       148 ~~~N~a~~~~klg---~y~eAi~~~~~AL~ldP-~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      +.+|.|.|+.+..   +-.++|..++..++.+| ..-+++|.+|.+++++|+|++|+.+++..|+++|+|..+......+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4566666666655   44578888888888777 5788999999999999999999999999999999999999999998


Q ss_pred             HHHhhh
Q 007653          224 KEILMK  229 (594)
Q Consensus       224 ~~~l~~  229 (594)
                      +.++.+
T Consensus       121 e~~i~k  126 (144)
T 1y8m_A          121 EDKIQK  126 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888754

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.66  E-value=0.00034  Score=75.44  Aligned_cols=109  Identities=12%  Similarity=0.047  Sum_probs=29.2

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      +....+...+..+...|+|++|+.+|..+++..+. +         .+...++.||.++|++.++.+.+..     | +.
T Consensus        59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~---------~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~  122 (449)
T 1b89_A           59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-S---------YVETELIFALAKTNRLAELEEFING-----P-NN  122 (449)
T ss_dssp             ------------------------------------------------------------CHHHHTTTTTC-----C---
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-c---------hhHHHHHHHHHHhCCHHHHHHHHcC-----C-cH
Confidence            34556777777777777777777777777664322 1         2456777788888888887777753     3 33


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      .+|..+|.++...|+|++|+.+|.++        ..+..++.+...+++++++
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~A  167 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAA  167 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHH
Confidence            47888888888888888888888766        3566666666666665543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.63  E-value=0.00011  Score=79.35  Aligned_cols=77  Identities=10%  Similarity=-0.083  Sum_probs=64.2

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l  175 (594)
                      .++..+..+.++|.+|..+|+|++|+.+|+++|++....-. ..+...+..|+|+|.+|..+|+|++|+..|++|+++
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999986532211 112234668999999999999999999999999976

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.32  E-value=0.00066  Score=60.96  Aligned_cols=101  Identities=8%  Similarity=-0.005  Sum_probs=75.6

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      .++++..+.++|+..+ ...-.++..++.+..+.+..+   ..++|..++..++..|...        -.|++.+|..|+
T Consensus        19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~--------Rd~LYyLAvg~y   89 (134)
T 3o48_A           19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY   89 (134)
T ss_dssp             CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh--------HHHHHHHHHHHH
Confidence            4455555666666665 333346777788877766554   4679999999988776432        348899999999


Q ss_pred             ccccchhhhhhcceeeeecccchHHHHHhccch
Q 007653          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (594)
Q Consensus       158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al  190 (594)
                      ++|+|.+|..+++..|+++|+|..+...+..+-
T Consensus        90 klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie  122 (134)
T 3o48_A           90 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  122 (134)
T ss_dssp             HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            999999999999999999999998766554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.15  E-value=0.00026  Score=66.04  Aligned_cols=103  Identities=12%  Similarity=0.095  Sum_probs=78.6

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeec---cc--
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---AK--  178 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ld---P~--  178 (594)
                      ..++.....++..+.|+.|+-.+..++.+...+++.-.-...+.+++.+|.+++..++|..|+..|++||.+.   ++  
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3466677778899999999999999887765543211112223467889999999999999999999986442   11  


Q ss_pred             --------------------chHHHHHhccchhhhhhHHHHhhhcccc
Q 007653          179 --------------------NVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       179 --------------------~~ka~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                                          ..+..|..+.||..++++++|+..++..
T Consensus       101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                                1267899999999999999999998864

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.97  E-value=0.0013  Score=59.80  Aligned_cols=98  Identities=8%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc---hhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF---SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y---~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      .++++..+..+|..... .....+..++.+..+.+..+.   .++|..++..+...|...        -.|.+.+|..|+
T Consensus        18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~--------RdcLYyLAvg~y   88 (144)
T 1y8m_A           18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY   88 (144)
T ss_dssp             CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch--------hHHHHHHHHHHH
Confidence            44445555566665522 245577888888888776654   579999999988766432        348899999999


Q ss_pred             ccccchhhhhhcceeeeecccchHHHHHhc
Q 007653          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (594)
Q Consensus       158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg  187 (594)
                      ++|+|.+|..+++..|+++|+|..+...+.
T Consensus        89 kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           89 KLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             TTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            999999999999999999999988755443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.67  E-value=0.0021  Score=65.40  Aligned_cols=134  Identities=8%  Similarity=-0.041  Sum_probs=93.3

Q ss_pred             hhhhhhcCCChhHHHHHHHH-----hh-cC------ChHHHHHHHHhhhhcccccch--HHHHHHHhccccccc-----c
Q 007653           57 CAAEQLTHTPPEEVAEIGEK-----LA-NA------SPEEIATMRARIDAQMNYEFN--AAKMLKKQGNELYSE-----G  117 (594)
Q Consensus        57 ~a~e~l~~~~pee~~~~~~~-----~~-~~------~~~el~aa~~~~~a~~~~~~~--~a~~l~~~Gn~~~~~-----g  117 (594)
                      ...+.+.+..++..+.++=.     -| ..      ....+..+...+.+.++..++  ...+|.-+|..|.+.     |
T Consensus       139 ~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG  218 (301)
T 3u64_A          139 RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG  218 (301)
T ss_dssp             HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred             hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence            34555666667766654322     11 11      222344566777777777777  556999999999885     9


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcceeeeecccc-hHHHHHhccchhhhhh
Q 007653          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGR  195 (594)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~~AL~ldP~~-~ka~~~rg~al~~lg~  195 (594)
                      +.++|..+|++||+++|+..        +..++..|..|.. .++++++...+++||.++|.. +      +..+...++
T Consensus       219 d~ekA~~~ferAL~LnP~~~--------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P------~~~lan~~~  284 (301)
T 3u64_A          219 GMEKAHTAFEHLTRYCSAHD--------PDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP------HNKLLVILS  284 (301)
T ss_dssp             CHHHHHHHHHHHHHHCCTTC--------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS------SCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCC--------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC------ChhHHHHHH
Confidence            99999999999999999641        2367888888877 499999999999999998874 3      233444445


Q ss_pred             HHHHhhhcc
Q 007653          196 LEEAVSDLS  204 (594)
Q Consensus       196 ~~eAi~~le  204 (594)
                      -.+|...+.
T Consensus       285 q~eA~~LL~  293 (301)
T 3u64_A          285 QKRARWLKA  293 (301)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.53  E-value=0.0028  Score=58.17  Aligned_cols=112  Identities=11%  Similarity=-0.095  Sum_probs=86.3

Q ss_pred             HHHHHHHhcccccccccc------hhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeee
Q 007653          102 AAKMLKKQGNELYSEGRF------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~l  175 (594)
                      ..+.|...-..+-+.|+.      ++-++.|++|+...|... ...-.-.+.+|++.|.. ...++.++|.+.|..++.+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence            344454444444444665      788899999999888764 23334445566666644 6779999999999999998


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       176 dP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      +...++.|...|.--.+.|+...|.+.+.+|+.+.|...+
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            8889999999999889999999999999999999987543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.90  E-value=0.0085  Score=68.16  Aligned_cols=128  Identities=9%  Similarity=-0.102  Sum_probs=100.3

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHH-HHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhh
Q 007653           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL-QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV  168 (594)
Q Consensus        90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi-~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~  168 (594)
                      ..|.+.+...+..++.|...+..+...|+..+|+ ..|.+|+..+|...         .+|+..+.++.+.+++++|...
T Consensus       330 ~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~---------~Lwl~~a~~ee~~~~~e~aR~i  400 (679)
T 4e6h_A          330 YVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA---------VLAFSLSEQYELNTKIPEIETT  400 (679)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHhCCHHHHHHH
Confidence            4455666667777889999999998999999998 99999999998773         4678888899999999999999


Q ss_pred             cceeeeec-----------c-----------cchHHHHHhccchhhhhhHHHHhhhccccccc-CCCCChHHHHHhHHHH
Q 007653          169 GSEVLAYD-----------A-----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTIADVLRDAKE  225 (594)
Q Consensus       169 ~~~AL~ld-----------P-----------~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l-~P~~~~a~~~l~~a~~  225 (594)
                      |+++|..-           |           +....|...+....+.|..+.|...|.+|++. .+....++.....++.
T Consensus       401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~  480 (679)
T 4e6h_A          401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY  480 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            99999752           4           24557788888888899999999999999887 3333455544444443


Q ss_pred             H
Q 007653          226 I  226 (594)
Q Consensus       226 ~  226 (594)
                      .
T Consensus       481 ~  481 (679)
T 4e6h_A          481 H  481 (679)
T ss_dssp             T
T ss_pred             H
Confidence            3

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.31  E-value=0.013  Score=54.53  Aligned_cols=88  Identities=16%  Similarity=0.270  Sum_probs=62.5

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc----------------ceeeeeecccCceeeeccccchhh
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG----------------RTLLLACSLNSMSCYLKTKQYDEC  165 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~----------------~~l~~~~~~N~a~~~~klg~y~eA  165 (594)
                      .++.+...|+.+|.+++|..|+..|++||++....+....                ......+.+.++.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4678899999999999999999999999886653321100                000113668899999999999999


Q ss_pred             hhhcceeeeecccchHHHHHhccch
Q 007653          166 IKVGSEVLAYDAKNVKALYRRGQAY  190 (594)
Q Consensus       166 i~~~~~AL~ldP~~~ka~~~rg~al  190 (594)
                      |..++. |-..-..++...-+|..|
T Consensus       142 i~~Le~-Ip~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDG-IPSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred             HHHHhc-CCchhcCHHHHHHHHHHh
Confidence            998765 333345666666666655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.41  E-value=0.011  Score=62.67  Aligned_cols=102  Identities=13%  Similarity=0.023  Sum_probs=73.0

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccc-------------cceeeeeecccCceeeeccccchhhhhhcce
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------------GRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      .+...|......|+...|+..|.+|+.+.....-..             ..+....+...++.+++..|+|.+++..+.+
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            344444445556778888888888887754332100             1122233444566777888999999999999


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA  206 (594)
                      ++..+|-+-.+|..+-.+|+..|+..+|+..|+++
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999889999999999999999998888775

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=91.95  E-value=0.026  Score=64.22  Aligned_cols=118  Identities=8%  Similarity=-0.077  Sum_probs=88.8

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccc-cchhhhhhcceeeeecccch
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg-~y~eAi~~~~~AL~ldP~~~  180 (594)
                      ....|....+...+.+..+.|...|.+|++..|...        ..+|...+....+.+ +++.|...|+++|+..|+++
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~  504 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG  504 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch
Confidence            344677777777788889999999999998733221        124555555555554 59999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHhHHHHHh
Q 007653          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEIL  227 (594)
Q Consensus       181 ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~---~~~a~~~l~~a~~~l  227 (594)
                      ..+...+..+...|+.+.|...|++|+...|+   ...++..+...+...
T Consensus       505 ~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~  554 (679)
T 4e6h_A          505 EYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV  554 (679)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence            98888888888899999999999999999884   344555554444443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=85.78  E-value=0.11  Score=56.77  Aligned_cols=80  Identities=9%  Similarity=-0.080  Sum_probs=71.6

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      |..++|.+.+....+..|..+|.+|+.++|++...|..+|......|++-+|+-+|-+++.....++.++.+|..+..+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            45667777777778899999999999999999999999999999999999999999999998888899999998876665

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=82.74  E-value=0.12  Score=56.15  Aligned_cols=127  Identities=10%  Similarity=-0.024  Sum_probs=73.4

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------cccee-----------------
Q 007653           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTL-----------------  144 (594)
Q Consensus        90 ~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l-----------------  144 (594)
                      ..|.+.+...+..+..|...+..+...|+.++|...|.+|+.. |.....        +...+                 
T Consensus       200 ~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~  278 (493)
T 2uy1_A          200 FIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE  278 (493)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence            3444445455666788888888889999999999999999999 775320        00000                 


Q ss_pred             ------eeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChHH
Q 007653          145 ------LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIA  217 (594)
Q Consensus       145 ------~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg-~~~eAi~~lekAl~l~P~~~~a~  217 (594)
                            ...+|...+..+.+.+.++.|...|.+| ...+...+.|...+.....++ +++.|...|+.+++..|+.+..+
T Consensus       279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~  357 (493)
T 2uy1_A          279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLK  357 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHH
Confidence                  0011222222233445566666666666 222223344444444444445 36677777777777666665543


Q ss_pred             H
Q 007653          218 D  218 (594)
Q Consensus       218 ~  218 (594)
                      .
T Consensus       358 ~  358 (493)
T 2uy1_A          358 E  358 (493)
T ss_dssp             H
T ss_pred             H
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	594
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	1e-11
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	6e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.004
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 95  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLL 146
           +M+ +     A ++K++G   +  G++  A+ +Y         +  L    S    + LL
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 64

Query: 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
           A  LN   CYLK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D    
Sbjct: 65  AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124

Query: 207 HEVSPDDGTIADVLRDAKEILMKED 231
            EV+P +      +   ++   + +
Sbjct: 125 LEVNPQNKAARLQIFMCQKKAKEHN 149

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 55.8 bits (133), Expect = 7e-10
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-------QGIHSSEGRTLLLACSLNS 152
             +A  +K++GNE + +   + A+ KY  A             I   + + + ++C+LN 
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +CY K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  A  ++P+
Sbjct: 74  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133

Query: 213 DGTIADVLRDAKEILMK 229
           +  I +        L +
Sbjct: 134 NLDIRNSYELCVNKLKE 150

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSM 153
             ++ LK  GN  +    +  A++KY    + ++G  +       ++ + + L+C LN  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +C LK   +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A E++P+D
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 214 GTIADVLRDAKEILMKED 231
             I   L   K+ +  + 
Sbjct: 145 KAIQAELLKVKQKIKAQK 162

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 2e-08
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           +A+ LK+QGN L+   ++  A   Y  A       +             N   CYLK +Q
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYT-----NRALCYLKMQQ 53

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ + 
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           A   K+ GN+ Y +  F  AL+ Y  AK+      +    T   A            +  
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
           ++ I+VG E      +  KA  R G +Y    + ++A+   + +         +    + 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQ 120

Query: 223 AKEILMKE 230
           A++IL ++
Sbjct: 121 AEKILKEQ 128

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           A+ LK Q N+ +    + NA++ Y  A +                   N    YL+T+ Y
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECY 60

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
              +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       ++
Sbjct: 61  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120

Query: 223 AKEILMKED 231
             +I+ ++ 
Sbjct: 121 CNKIVKQKA 129

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 95  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLL 146
           +MN E     + ++K++G   + EG++  AL +Y         + +     + + + L L
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 62

Query: 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
           A  LN   C+LK + +   I+  ++ L  D+ N K L RRG+A+  +   E A +D    
Sbjct: 63  ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 122

Query: 207 HEVSPDDGTIADVLRDAKEILMKED 231
            ++ P++      L   ++ + ++ 
Sbjct: 123 LQLYPNNKAAKTQLAVCQQRIRRQL 147

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 4e-07
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 9/113 (7%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           +         N L  +G  + A   Y  A +                   N  +   +  
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNNLANIKREQG 319

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +E +++  + L    +   A        +  G+L+EA+     A  +SP  
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 6/58 (10%), Positives = 19/58 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +   ++   +   ++   +  N   L      +    RL+ +    + A + +P  
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 9/86 (10%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
             +  +  Y  G F  A +  +   +            LL        S + + ++ D  
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLL-----LLSSIHFQCRRLDRS 52

Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYK 191
               +  +  +    +A    G  YK
Sbjct: 53  AHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 9/64 (14%), Positives = 22/64 (34%)

Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
           +N  +   + + +D  +      L+    +          Y + G ++ A+     A E+
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 210 SPDD 213
            P  
Sbjct: 267 QPHF 270

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 7e-06
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
              LK++GN+  S G   +ALQ Y  A K     H             N  + Y K   Y
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------VLYSNRSAAYAKKGDY 53

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
            +  + G + +       K   R+  A + + R EEA        +   ++  + + L++
Sbjct: 54  QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113

Query: 223 AKE 225
            + 
Sbjct: 114 MEA 116

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 12/68 (17%), Positives = 23/68 (33%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215
            L   Q  + +++  E +    K+        +     G  E A   L  + ++ P+   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 216 IADVLRDA 223
            A  LR  
Sbjct: 66  GASQLRHL 73

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 38/146 (26%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-------------------- 145
           L  +G     +  +  AL  +   +     I  + G                        
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 146 --LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----------------VKALYRRG 187
                       Y +T++YD  IK   E L     N                 + LY   
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 188 QAYKDIGRLEEAVSDLSNAHEVSPDD 213
             Y      ++A   L+ A  +  + 
Sbjct: 128 FMYAKKEEWKKAEEQLALATSMKSEP 153

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 158 KTKQYDECIKVGSEVLA----YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            T Q +  +    ++LA     D +  + LY RG  Y  +G    A +D S A  + PD 
Sbjct: 11  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 8/115 (6%)

Query: 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178
           F N +       KN    + SE +  L             +  Y + ++    V   D  
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLF------LEAASGFYTQLLQELCTVFNVDLP 118

Query: 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEILMKED 231
                 + G            V   S++         +   D+ R   +    E 
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES 173

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.004
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +      Q +E +      L      +++ Y  G +  ++G   EAV     A  +   
Sbjct: 213 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272

Query: 213 D 213
            
Sbjct: 273 S 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	594
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.68
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.63
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.6
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.44
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.43
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.41
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.32
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.32
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.29
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.29
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.26
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.23
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.02
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.97
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.96
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.93
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.87
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.87
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.86
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.8
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.78
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.78
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.61
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.34
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.22
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.18
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.07
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.0
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.87
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.76
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.5
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.37
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.6
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.71
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.51
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.43

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=1.5e-19  Score=165.86  Aligned_cols=132  Identities=30%  Similarity=0.451  Sum_probs=118.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc-------cceeeeeecccCceeeeccccchhhhhhcce
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------GRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~  171 (594)
                      ..+.+..++..|+.+|+.|+|.+|+..|+++|.+.+......       ...+...+|+|+|.||+++++|.+|+.+|++
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            556678899999999999999999999999999887654311       2233456899999999999999999999999


Q ss_pred             eeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       172 AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      +|+++|.++++||++|.+|..+|+|++|+.+|+++++++|+|..++..+..+..++.+.
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.4e-19  Score=153.88  Aligned_cols=115  Identities=23%  Similarity=0.275  Sum_probs=109.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+..++.+|+.+++.|+|++|+.+|.++|.++|.++.         +|+++|.||+++|+|++|+.+|.++|+++|+++.
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---------hhhcccccccccccccccchhhhhHHHhccchhh
Confidence            3567899999999999999999999999999999954         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      +|+++|.+|..+|+|++|+.+|+++++++|+++.++..++.++.
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999988764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.4e-19  Score=163.64  Aligned_cols=133  Identities=24%  Similarity=0.375  Sum_probs=119.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc------cceeeeeecccCceeeeccccchhhhhhccee
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e------~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A  172 (594)
                      ....+..+++.|+.+|+.|+|++|+.+|+++|.++|......      ...+...+|.|+|.||+++|+|++|+.+|+++
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            555688999999999999999999999999999988765311      23344568899999999999999999999999


Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+|+.+...+..+..++.++.
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988876654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.68  E-value=9.7e-19  Score=162.64  Aligned_cols=133  Identities=25%  Similarity=0.401  Sum_probs=118.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc------ccceeeeeecccCceeeeccccchhhhhhccee
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A  172 (594)
                      ..+.++.++..|+.+|+.|+|.+|+.+|.++|.+.+.....      ....+...+|+|+|.||+++++|.+|+.+|+++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            45568899999999999999999999999999987765431      233445568899999999999999999999999


Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      |+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++..+...+..+...+.++.
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  149 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHN  149 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999988876543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.6e-18  Score=153.82  Aligned_cols=120  Identities=23%  Similarity=0.345  Sum_probs=112.9

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      .+.++.++.+|+.+++.|+|++|+.+|+++|+++|.++         .+|+|+|.||+.+|++++|+.+|.++|+++|++
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh---------hhhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            35578899999999999999999999999999999985         489999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       180 ~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      +.+|+++|.+|..+|+|++|+.+|++++.++|++..++..+..+...+.
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888866554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=7.7e-18  Score=157.89  Aligned_cols=103  Identities=26%  Similarity=0.371  Sum_probs=98.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ++.++++|+.+++.|+|++|+.+|+++|+++|.++         .+|+|+|.||.++|+|++|+.+|.+||+++|+++.+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~---------~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a   74 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   74 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHH
Confidence            56799999999999999999999999999999985         489999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      |+++|.+|..+|+|++|+.+|++|+.++|++.
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999998653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.3e-17  Score=154.70  Aligned_cols=131  Identities=27%  Similarity=0.495  Sum_probs=115.4

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------cccceeeeeecccCceeeeccccchhhhhhccee
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~A  172 (594)
                      ...++.++..|+.++..|+|.+|+..|.++|.+.+....       .........+|.|+|.||+++|+|++|+.+|++|
T Consensus        24 ~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a  103 (169)
T d1ihga1          24 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  103 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh
Confidence            344667889999999999999999999999987654331       1123445668899999999999999999999999


Q ss_pred             eeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       173 L~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      |+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..+..+...+.++
T Consensus       104 l~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         104 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998887654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7e-16  Score=136.71  Aligned_cols=117  Identities=21%  Similarity=0.294  Sum_probs=103.8

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccch-
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  180 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~-  180 (594)
                      .+..++++|+.++..|+|++|+.+|+++|+++|.++         .+|.|+|.||.++|+|++|+.+|+++|+++|.+. 
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---------HHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            467899999999999999999999999999999984         4899999999999999999999999999999875 


Q ss_pred             ------HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          181 ------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       181 ------ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                            .+|+++|.++..+++|++|+.+|++++.++++ +.+...+..++..++
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence                  46777888888889999999999999998875 567777777766654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=5.2e-15  Score=143.33  Aligned_cols=120  Identities=21%  Similarity=0.071  Sum_probs=110.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~  178 (594)
                      ....+..++.+|.++++.|+|++|+..|+++|+++|+++.         +|+++|.||.++|+|++|+.+|+++|+++|+
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH---------HHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            4557889999999999999999999999999999999954         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ++.+|+++|.+|..+|++++|+.+|+++++++|++......+..+...+
T Consensus       104 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         104 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999887766666554444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-14  Score=146.09  Aligned_cols=136  Identities=13%  Similarity=0.076  Sum_probs=120.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+.+.++..++.+..+..+|..+...|++.+|+..|.+++...|...         .++..++.+|.+.|+|+
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA---------DSLNNLANIKREQGNIE  322 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccc---------hhhhHHHHHHHHCCCHH
Confidence            345566777777777888888899999999999999999999999999888874         37889999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      +|+..|+++|+++|+++.+++++|.+|..+|++++|+.+|++|++++|++..++..++.+..+++
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999877664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.7e-15  Score=130.35  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=102.0

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec---cccchhhhhhcceeeeecccc--hHH
Q 007653          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSEVLAYDAKN--VKA  182 (594)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k---lg~y~eAi~~~~~AL~ldP~~--~ka  182 (594)
                      ++.+.++..++|++|++.|+++|.++|.++.         +++|+|.|+.+   .+++++|+..|+++|..+|.+  +.+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~---------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~   74 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDY   74 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHH
Confidence            4667788999999999999999999999965         89999999986   456778999999999988765  569


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      ||++|.+|..+|+|++|+.+|+++++++|++..++..+..+..++++
T Consensus        75 ~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          75 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999998887754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.7e-14  Score=144.39  Aligned_cols=204  Identities=10%  Similarity=-0.035  Sum_probs=166.1

Q ss_pred             hHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc
Q 007653           38 ELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE  116 (594)
Q Consensus        38 ~l~r~A~e~mk~~~pe~~~~a~e~l~~~~pee~~~~~~~~~-~~~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~  116 (594)
                      +.+.++...++..+.++....++.+....|........... .....++..+...+.+.+...++....+..+|..+...
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            34566777788888888888888888888887766554422 12334566778888888888888899999999999999


Q ss_pred             ccchhHHHHHHHhhhccccccccc------------------------------------------cceeeeeecccCce
Q 007653          117 GRFSNALQKYLLAKKNLQGIHSSE------------------------------------------GRTLLLACSLNSMS  154 (594)
Q Consensus       117 g~y~eAi~~Y~kAL~l~p~~~~~e------------------------------------------~~~l~~~~~~N~a~  154 (594)
                      |++.+|+..|.+++.+.|......                                          .......++.++|.
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            999999999999988877643200                                          00112345678899


Q ss_pred             eeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007653          155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       155 ~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~  234 (594)
                      ++...|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++++.+.
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  260 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV  260 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             CCccchH
Q 007653          235 GPRGLLI  241 (594)
Q Consensus       235 ~~~~~~i  241 (594)
                      ..+...+
T Consensus       261 ~~~~~al  267 (323)
T d1fcha_         261 EHFLEAL  267 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666555

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.6e-14  Score=143.65  Aligned_cols=136  Identities=7%  Similarity=-0.069  Sum_probs=112.8

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      .+.|...+...+..+|+...+|..+|.++...+ +|++|+..|.++|+++|.+.         .+|.++|.++.++|+|+
T Consensus        59 ~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~---------~a~~~~~~~~~~l~~~~  129 (315)
T d2h6fa1          59 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY---------QVWHHRRVLVEWLRDPS  129 (315)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHHTCCT
T ss_pred             hHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhh---------hHHHHHhHHHHhhccHH
Confidence            345667777778888888888888888887766 48888888888888888884         48888888888888888


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~  229 (594)
                      +|+.+|.++|+++|++..+|+++|.++..+|++++|+.+|+++++++|.+..++..++.+...++.
T Consensus       130 eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         130 QELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             THHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            888888888888888888888888888888888888888888888888888888888877666543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.3e-14  Score=143.83  Aligned_cols=169  Identities=10%  Similarity=-0.020  Sum_probs=146.1

Q ss_pred             ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC--ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHH
Q 007653           48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA--SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK  125 (594)
Q Consensus        48 k~~~pe~~~~a~e~l~~~~pee~~~~~~~~~~~--~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~  125 (594)
                      +.-..++....++.+....|+.......+....  ...+++.+...+...+..+++...++..+|.++.+.|+|++|+..
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~  134 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF  134 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence            345567777778888888899888877663222  122456778888888999999999999999999999999999999


Q ss_pred             HHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhh------HHHH
Q 007653          126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR------LEEA  199 (594)
Q Consensus       126 Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~------~~eA  199 (594)
                      |.++|+++|.+.         .+|.++|.|+..+++|++|+.+|+++|+++|.+..+|++||.++..+++      +++|
T Consensus       135 ~~kal~~dp~n~---------~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~a  205 (315)
T d2h6fa1         135 IADILNQDAKNY---------HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE  205 (315)
T ss_dssp             HHHHHHHCTTCH---------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred             Hhhhhhhhhcch---------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHh
Confidence            999999999984         4999999999999999999999999999999999999999999766554      7899


Q ss_pred             hhhcccccccCCCCChHHHHHhHHHH
Q 007653          200 VSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       200 i~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      +.++.+++.++|++..++..++.+..
T Consensus       206 i~~~~~al~~~P~~~~~~~~l~~ll~  231 (315)
T d2h6fa1         206 VQYTLEMIKLVPHNESAWNYLKGILQ  231 (315)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            99999999999999999988877643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-13  Score=130.92  Aligned_cols=117  Identities=16%  Similarity=0.101  Sum_probs=99.2

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      +..++++|..++..|+|++|+..|.++.   +..         ..+|+|+|.||+.+|+|++|+.+|++||++||+++.+
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~---------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a   72 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAVQ---DPH---------SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA   72 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCC---------HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhh
Confidence            4467789999999999999999999753   233         2368999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCC----------------hHHHHHhHHHHHhhhcc
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKED  231 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~----------------~a~~~l~~a~~~l~~~~  231 (594)
                      |+++|.+|..+|+|++|+.+|++|+...+.+.                +++..++.+...+++..
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~  137 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK  137 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999998777653                34455666666665544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=6e-14  Score=127.06  Aligned_cols=113  Identities=18%  Similarity=0.073  Sum_probs=100.2

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecc----------ccchhhhhhcceeeeeccc
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~kl----------g~y~eAi~~~~~AL~ldP~  178 (594)
                      .+..+-+.+.|++|+..|+++++++|+++.         +++|+|.||..+          +.+++|+..|++||+++|+
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~~~---------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhhCCcchH---------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            455677888999999999999999999965         899999999865          4557899999999999999


Q ss_pred             chHHHHHhccchhhhhh-----------HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007653          179 NVKALYRRGQAYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (594)
Q Consensus       179 ~~ka~~~rg~al~~lg~-----------~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~  230 (594)
                      ++.+|+++|.+|..+|+           |++|+++|++|+.++|++..++..|+.+...+..+
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998765           79999999999999999999999999887665443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8.7e-14  Score=139.39  Aligned_cols=146  Identities=16%  Similarity=0.055  Sum_probs=129.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchh
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~e  164 (594)
                      ++.+...+.......+..+..+..+|..+++.|++++|+..|+++++++|.++.         +|.++|.+|...+++.+
T Consensus       219 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~  289 (388)
T d1w3ba_         219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD---------AYCNLANALKEKGSVAE  289 (388)
T ss_dssp             TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH---------HHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHH
Confidence            334555566666667777888999999999999999999999999999998854         88999999999999999


Q ss_pred             hhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007653          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (594)
Q Consensus       165 Ai~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~  239 (594)
                      |+..+.+++...|.+...++.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+.+...+..
T Consensus       290 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999988876655444433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.26  E-value=3.4e-14  Score=129.67  Aligned_cols=111  Identities=16%  Similarity=0.251  Sum_probs=94.0

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccccccccc---ceeeeeecccCceeeeccccchhhhhhcceeeeeccc--
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--  178 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~---~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~--  178 (594)
                      ..++..|+.++..|+|++|+..|+++|++.|..++...   ......+|.|+|.||.++|+|++|+.+|+++|.+.|.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            34556699999999999999999999999998764221   1223468999999999999999999999999987653  


Q ss_pred             ---------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          179 ---------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       179 ---------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                               ...+|+++|.+|..+|++++|+.+|++|+++.|+..
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                     456899999999999999999999999999977553

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.26  E-value=1.3e-13  Score=118.96  Aligned_cols=94  Identities=7%  Similarity=-0.045  Sum_probs=89.3

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHH
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~  184 (594)
                      .++++|..+++.|+|.+|+..|++++.++|.++.         +|.++|.||.+.+++++|+.+++++|+++|+++.+|+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   88 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   88 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccch---------hhhhhhhhhhhhhhHHHhhcccccccccccccccchH
Confidence            4577899999999999999999999999999854         8999999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhccccc
Q 007653          185 RRGQAYKDIGRLEEAVSDLSNAH  207 (594)
Q Consensus       185 ~rg~al~~lg~~~eAi~~lekAl  207 (594)
                      .+|.+|..+|++++|++.|++.|
T Consensus        89 ~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999865

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5e-13  Score=126.32  Aligned_cols=118  Identities=14%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..|...+....   +..+..++++|++++..|+|++|+.+|++||+++|.++.         +|+|+|.||.++|+|+
T Consensus        20 d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~---------a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          20 DWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             CHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh---------hHHHHHHHHHhhccHH
Confidence            3444555554432   234678999999999999999999999999999999954         9999999999999999


Q ss_pred             hhhhhcceeeeeccc----------------chHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          164 ECIKVGSEVLAYDAK----------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       164 eAi~~~~~AL~ldP~----------------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                      +|+.+|++||...+.                ...++|++|.+|..+|++++|++.|++|+.+.|+.
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999999875443                35789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.1e-13  Score=134.01  Aligned_cols=108  Identities=13%  Similarity=0.097  Sum_probs=98.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      .+..+..+|..+...|+|++|+.+|++++.+.|.++.         +|+++|.||..+|+|++|+..|+++|+++|+++.
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhccccccccccccccc---------chhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            3567889999999999999999999999999998854         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007653          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (594)
Q Consensus       182 a~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~  218 (594)
                      +|+++|.+|..+|+|++|+.+|++|++++|++..++.
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            9999999999999999999999999999998865443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.3e-12  Score=125.98  Aligned_cols=126  Identities=10%  Similarity=-0.116  Sum_probs=105.9

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (594)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a  189 (594)
                      +..+....+++.|+..+.+++...+..+     .....+|+++|.||.++|+|++|+.+|+++|.++|+++.+|+++|.+
T Consensus         6 ~~~~~~~~~~e~al~~~~e~l~~~~~~~-----~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~   80 (259)
T d1xnfa_           6 AVPLQPTLQQEVILARMEQILASRALTD-----DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY   80 (259)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchH
Confidence            3445667788899999999887543221     11245899999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007653          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (594)
Q Consensus       190 l~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~  240 (594)
                      |..+|++++|+.+|+++++++|++..++..++.+...+++...+.......
T Consensus        81 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  131 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF  131 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999998887766544443333

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.3e-11  Score=132.99  Aligned_cols=137  Identities=7%  Similarity=-0.068  Sum_probs=95.6

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      .+..+...+.+.....++....+.++|..+.+.+++.+|+..|.+++.+++..           +++++|.+++..++|+
T Consensus       101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH-----------CLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHTC-------------------------------CCHHHHHHHHH-----------HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH-----------HHHHHHHHHHHcccHH
Confidence            34556666777777788888999999999999999999999999999887765           7899999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~  231 (594)
                      +|+.+|.+|++++|++..+|+++|.+|...|++.+|+.+|.+|+.++|.++.++.+|..+..+..+..
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~  237 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR  237 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999877765543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=9.9e-12  Score=115.38  Aligned_cols=93  Identities=12%  Similarity=0.040  Sum_probs=85.5

Q ss_pred             cccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007653          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (594)
Q Consensus       149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~  228 (594)
                      +.+.|.+|++.|+|++|+..|++||+++|.++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hccCCCCCccchH
Q 007653          229 KEDGHHGPRGLLI  241 (594)
Q Consensus       229 ~~~~a~~~~~~~i  241 (594)
                      ++..+...+...+
T Consensus        87 ~~~~A~~~~~~al   99 (201)
T d2c2la1          87 SYDEAIANLQRAY   99 (201)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8776655555444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-11  Score=103.27  Aligned_cols=89  Identities=19%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ++.++++|+.+++.|+|.+|+..|++|+++.|..+..                                    .++.+.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~------------------------------------~~~~~~~   48 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS------------------------------------TIDKVSV   48 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC------------------------------------SSCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc------------------------------------CccHHHH
Confidence            4568899999999999999999999999988876421                                    1223455


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      |+++|.+|..+|+|++|+.+|+++++++|+++.++.+++.++..+
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            666666666666666666666666666666666666666655554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.5e-11  Score=106.50  Aligned_cols=107  Identities=9%  Similarity=-0.001  Sum_probs=93.1

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccc---cccchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      ..+++..+...|++.+...+..++.++++|.++++   .+++.+|+..|++++..+|....       ..+|+|+|.||+
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~-------~~~~~~Lg~~y~   83 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-------RDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH-------HHHHHHHHHHHH
Confidence            45578889999999999999999999999999986   45667899999999998775421       337899999999


Q ss_pred             ccccchhhhhhcceeeeecccchHHHHHhccchhhhh
Q 007653          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG  194 (594)
Q Consensus       158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg  194 (594)
                      ++|+|++|+.+|+++|+++|++..++..++.+..+++
T Consensus        84 ~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999998887766554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.2e-11  Score=104.37  Aligned_cols=99  Identities=8%  Similarity=0.006  Sum_probs=90.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..|...+...+...+..+..+..+|++++..|+|.+|+..|.++++++|.++.         +|+++|.||..+|+|+
T Consensus        18 ~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          18 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---------GYSRKAAALEFLNRFE   88 (117)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhh---------HHHHHHHHHHHccCHH
Confidence            3556777788888889999999999999999999999999999999999999954         8999999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~  191 (594)
                      +|+.+|+++|+++|+++.++..++.+..
T Consensus        89 ~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          89 EAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999998877653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.87  E-value=2.5e-11  Score=104.29  Aligned_cols=86  Identities=14%  Similarity=0.077  Sum_probs=81.3

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      .++++|.+|++.|+|.+|+..|+++|+++|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhccCC
Q 007653          228 MKEDGH  233 (594)
Q Consensus       228 ~~~~~a  233 (594)
                      ++...+
T Consensus        98 g~~~~A  103 (112)
T d1hxia_          98 HNANAA  103 (112)
T ss_dssp             HHHHHH
T ss_pred             CCHHHH
Confidence            876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=6.3e-11  Score=98.85  Aligned_cols=39  Identities=10%  Similarity=0.034  Sum_probs=18.8

Q ss_pred             cccCceeeeccccchhhhhhcceeeeecccchHHHHHhc
Q 007653          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (594)
Q Consensus       149 ~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg  187 (594)
                      +.|+|.||.++|+|++|+..|+++|+++|+++.++++++
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            444444444444444444444444444444444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1e-10  Score=106.07  Aligned_cols=109  Identities=8%  Similarity=0.014  Sum_probs=95.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      ++..|...+...+..++..+..|.++|.+++..|+|.+|+..|.++|+++|.+.         .+|.++|.||..+|+|+
T Consensus        25 ~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~---------~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          25 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------KGYYRRAASNMALGKFR   95 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccch---------HHHHHHHHHHHHcCCHH
Confidence            455677777788888899999999999999999999999999999999999985         48999999999999999


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhh--hhhHHHHhh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKD--IGRLEEAVS  201 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~--lg~~~eAi~  201 (594)
                      +|+.+|.+++.++|++..++..++.+...  .+.+++|+.
T Consensus        96 eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          96 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998888777543  344666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=6.4e-11  Score=104.03  Aligned_cols=94  Identities=14%  Similarity=0.051  Sum_probs=80.5

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      .+.++|.+|++.|+|++|+.+|+++|+++|+++.+++++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999988777777776666


Q ss_pred             hhccCCCCCccchH
Q 007653          228 MKEDGHHGPRGLLI  241 (594)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (594)
                      +....+...+...+
T Consensus        86 g~~~~~~~~~~~A~   99 (128)
T d1elra_          86 GNSYFKEEKYKDAI   99 (128)
T ss_dssp             HHHHHHTTCHHHHH
T ss_pred             HHHHHHhCCHHHHH
Confidence            65544444444444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.80  E-value=1.7e-10  Score=103.82  Aligned_cols=108  Identities=14%  Similarity=0.018  Sum_probs=96.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhccccccc----------ccchhHHHHHHHhhhccccccccccceeeeeecccCc
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM  153 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a  153 (594)
                      .++.+...+...+...|+.++.+.++|.+++..          +++++|+.+|+++|+++|.++.         +|+|+|
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~---------a~~~lG   82 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH---------HHhhHH
Confidence            367788888899999999999999999998754          5557899999999999999954         899999


Q ss_pred             eeeecccc-----------chhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHh
Q 007653          154 SCYLKTKQ-----------YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (594)
Q Consensus       154 ~~~~klg~-----------y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi  200 (594)
                      .+|..+++           |.+|+++|.++|+++|++..++..++.+....+.|.++.
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988764           799999999999999999999999999998888888875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.78  E-value=4.5e-10  Score=102.81  Aligned_cols=95  Identities=9%  Similarity=0.004  Sum_probs=87.5

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecc
Q 007653           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        98 ~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP  177 (594)
                      ..+..+..+.++|.++++.|+|.+|+..|+++|+++|.++.         +|+++|.||..+|+|++|+.+|.++|+++|
T Consensus        72 ~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~---------a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          72 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---------ALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh---------HHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            45667888999999999999999999999999999999854         899999999999999999999999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhh
Q 007653          178 KNVKALYRRGQAYKDIGRLEEAVS  201 (594)
Q Consensus       178 ~~~ka~~~rg~al~~lg~~~eAi~  201 (594)
                      ++..++..++.++..+..+.++.+
T Consensus       143 ~n~~~~~~l~~~~~~l~~~~~~~k  166 (169)
T d1ihga1         143 EDKAIQAELLKVKQKIKAQKDKEK  166 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888877653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=2.2e-10  Score=106.95  Aligned_cols=113  Identities=12%  Similarity=0.040  Sum_probs=98.1

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc-------------cceeeeeecccCceeeeccccchhhh
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------------GRTLLLACSLNSMSCYLKTKQYDECI  166 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------------~~~l~~~~~~N~a~~~~klg~y~eAi  166 (594)
                      ....+.++..|+.+...|++++|+.+|.+||.+.+......             .......++.+++.+++++|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            34567899999999999999999999999999987654211             12234457889999999999999999


Q ss_pred             hhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccc-------cccCCC
Q 007653          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA-------HEVSPD  212 (594)
Q Consensus       167 ~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekA-------l~l~P~  212 (594)
                      .+|+++|.++|.+..+|++++.+|..+|++.+|+..|+++       +.++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       667775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.2e-09  Score=110.00  Aligned_cols=130  Identities=15%  Similarity=-0.060  Sum_probs=108.7

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHH------------------------------HHHHHhhhccc
Q 007653           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL------------------------------QKYLLAKKNLQ  134 (594)
Q Consensus        85 l~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi------------------------------~~Y~kAL~l~p  134 (594)
                      .+.+.+.+...+..++....++..+|.++...|+|++|+                              ..|.+++...|
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~  239 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRA  239 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCc
Confidence            445667777788888888999999999888887776543                              44445554444


Q ss_pred             cccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007653          135 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (594)
Q Consensus       135 ~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~  214 (594)
                      ..         ...+.+++.++...+++.+|+..|.+++..+|.+..+++.+|.+|..+|++++|+.+|+++++++|.+.
T Consensus       240 ~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         240 EP---------LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             CC---------SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             ch---------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence            44         447889999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHHHHHhHH
Q 007653          215 TIADVLRDA  223 (594)
Q Consensus       215 ~a~~~l~~a  223 (594)
                      ..+..++..
T Consensus       311 ~y~~~L~~~  319 (334)
T d1dcea1         311 AYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887777543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=1.5e-09  Score=109.22  Aligned_cols=131  Identities=10%  Similarity=-0.062  Sum_probs=114.3

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeecccc--chhhhhhcceeeeecccchH
Q 007653          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ--YDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       104 ~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~--y~eAi~~~~~AL~ldP~~~k  181 (594)
                      ..+...+..+...+++.+|+.+|+++++.+|.++.         +|++++.++..+++  +.+|+..|.+++.++|.+..
T Consensus        74 ~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~  144 (334)
T d1dcea1          74 QHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFH  144 (334)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH---------HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhh
Confidence            34555666677888899999999999999999854         78899888777765  78999999999999999988


Q ss_pred             HH-HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHH
Q 007653          182 AL-YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE  243 (594)
Q Consensus       182 a~-~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee  243 (594)
                      ++ +.+|.++...+++++|+.++++++.++|.+..++..++.+...++++..+.......+.-
T Consensus       145 ~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~  207 (334)
T d1dcea1         145 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV  207 (334)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred             hhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            86 578899999999999999999999999999999999999999999998887776665543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.9e-09  Score=99.09  Aligned_cols=89  Identities=12%  Similarity=-0.077  Sum_probs=82.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...+.++|.++++.|+|.+|+.+|+++|.++|.++         .+|+++|.||+.+|+|++|+.+|.++++++|+++.+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~---------~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccch---------hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            45678899999999999999999999999999985         489999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHh
Q 007653          183 LYRRGQAYKDIGRLEEAV  200 (594)
Q Consensus       183 ~~~rg~al~~lg~~~eAi  200 (594)
                      ...++.++..++++.+..
T Consensus       133 ~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         133 KTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999998888777654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.61  E-value=1.6e-09  Score=99.21  Aligned_cols=88  Identities=10%  Similarity=-0.057  Sum_probs=81.3

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchH
Q 007653          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (594)
Q Consensus       102 ~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~k  181 (594)
                      ....+.++|.++++.|+|.+|+..|+++|.++|.+.         .+|+++|.||..+|+|++|+.+|.+++.++|++..
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~---------~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            345688899999999999999999999999999984         48999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHH
Q 007653          182 ALYRRGQAYKDIGRLEE  198 (594)
Q Consensus       182 a~~~rg~al~~lg~~~e  198 (594)
                      ++..++.+...++++.+
T Consensus       134 ~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         134 ARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHH
Confidence            99999999988887765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.56  E-value=2e-09  Score=97.25  Aligned_cols=85  Identities=5%  Similarity=-0.100  Sum_probs=77.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHH
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka  182 (594)
                      ...+.++|.++++.|+|.+|+.+|.++|+++|.+.         .+|+++|.||..+|+|++|+.+|.++++++|++..+
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~---------ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  137 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---------KALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  137 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhh---------hhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            45778999999999999999999999999999984         499999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhH
Q 007653          183 LYRRGQAYKDIGRL  196 (594)
Q Consensus       183 ~~~rg~al~~lg~~  196 (594)
                      ...++.+...+++.
T Consensus       138 ~~~l~~~~~kl~~~  151 (153)
T d2fbna1         138 RNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988887766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=7.6e-09  Score=110.94  Aligned_cols=114  Identities=14%  Similarity=-0.016  Sum_probs=72.1

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhcc
Q 007653          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (594)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~  188 (594)
                      ++......+.|..|+..|.+++.++|.+.         .++.++|.++.+.+++.+|+..+.+++.++|  ..+++++|.
T Consensus        92 ~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~  160 (497)
T d1ya0a1          92 SLFLEAASGFYTQLLQELCTVFNVDLPCR---------VKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGD  160 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC----------------------------------------CCHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChhhH---------HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHH
Confidence            34455567889999999999998888774         4789999999999999999999999997776  468999999


Q ss_pred             chhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007653          189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (594)
Q Consensus       189 al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l~~~~~a  233 (594)
                      ++...++|++|+.+|++|+.++|++..++..|+.+....++...+
T Consensus       161 l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A  205 (497)
T d1ya0a1         161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT  205 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999998877766544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=8.7e-09  Score=102.04  Aligned_cols=114  Identities=14%  Similarity=-0.024  Sum_probs=94.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec-cccchhhhhhcceeeeecc
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDA  177 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k-lg~y~eAi~~~~~AL~ldP  177 (594)
                      ....+..+.+.|++|.+.|+|++|+.+|.+++++.+....   ......++.+++.+|.. .++|++|+..|.+|+++.+
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4556789999999999999999999999999998776532   11113467788888754 7999999999999998754


Q ss_pred             c------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007653          178 K------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (594)
Q Consensus       178 ~------~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~  215 (594)
                      .      ...+++++|.+|..+|+|++|+..|++++.+.+.+..
T Consensus       150 ~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            3      4667999999999999999999999999999988754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=2.5e-09  Score=106.11  Aligned_cols=131  Identities=11%  Similarity=0.035  Sum_probs=103.2

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc-
Q 007653          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (594)
Q Consensus       101 ~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~-  179 (594)
                      +.++.+...|+.+...++|++|+.+|.+++++......   ......+|.|+|.||.++++|++|+..|.+++++.+.. 
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~  111 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc
Confidence            34667888999999999999999999999997543321   01124589999999999999999999999999987665 


Q ss_pred             -----hHHHHHhccchh-hhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCC
Q 007653          180 -----VKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHH  234 (594)
Q Consensus       180 -----~ka~~~rg~al~-~lg~~~eAi~~lekAl~l~P~~------~~a~~~l~~a~~~l~~~~~a~  234 (594)
                           ..+++++|.+|. .+|+|++|+..|++|+.+.+..      ..++..++.+...++++..+.
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence                 778999999885 5799999999999999886543      234566677766666555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.22  E-value=7e-08  Score=95.20  Aligned_cols=124  Identities=7%  Similarity=-0.016  Sum_probs=86.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccch
Q 007653           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (594)
Q Consensus        84 el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~  163 (594)
                      +++.+...+.+.++.+|+.+..+..+|..++..|+|++|+..|+++++++|....         ++.+++.++...+.+.
T Consensus        11 ~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~---------~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1          11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---------GASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---------HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHhccccH
Confidence            3445566666666667777777777777777777777777777777777777633         5666666666677777


Q ss_pred             hhhhhcceeee-ecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007653          164 ECIKVGSEVLA-YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (594)
Q Consensus       164 eAi~~~~~AL~-ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a  216 (594)
                      ++...+.+.+. .+|.....++.++.++...|++++|+..++++.++.|..+.+
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            77666655433 356666777777777777777777777777777777776544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.18  E-value=5.7e-08  Score=95.87  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=84.4

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccc
Q 007653          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (594)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~a  189 (594)
                      +..+++.|++++|+..|+++|+.+|.+..         ++.+++.+|...|+|++|+..|+++++++|++..+++.++.+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~---------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~l   73 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDAS---------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   73 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34578899999999999999999999954         899999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccC
Q 007653          190 YKDIGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       190 l~~lg~~~eAi~~lekAl~l~  210 (594)
                      +...+..+++...+.+...+.
T Consensus        74 l~a~~~~~~a~~~~~~~~~~~   94 (264)
T d1zbpa1          74 VKAAQARKDFAQGAATAKVLG   94 (264)
T ss_dssp             HHHHHHHHHHTTSCCCEECCC
T ss_pred             HHhccccHHHHHHhhhhhccc
Confidence            999999999998888766553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=8.8e-08  Score=93.16  Aligned_cols=110  Identities=15%  Similarity=-0.016  Sum_probs=93.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceee-----
Q 007653           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-----  173 (594)
Q Consensus        99 ~~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL-----  173 (594)
                      .......+...|..+...+++++|+..|.+++.+.+....     .....+.++|.+|..+|+|++|+..+++++     
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  283 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-----FLQGQWRNIARAQILLGEFEPAEIVLEELNENARS  283 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-----GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            3445667788899999999999999999999998776532     123456789999999999999999999997     


Q ss_pred             -eecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007653          174 -AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (594)
Q Consensus       174 -~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~  213 (594)
                       ...|..+.+++.+|.+|..+|++++|+++|++|+++.+..
T Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence             4568889999999999999999999999999999886543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.00  E-value=3.9e-08  Score=88.49  Aligned_cols=91  Identities=11%  Similarity=-0.013  Sum_probs=74.5

Q ss_pred             cCceeeeccccchhhhhhcceeeeecccc------------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC-----
Q 007653          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKN------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----  213 (594)
Q Consensus       151 N~a~~~~klg~y~eAi~~~~~AL~ldP~~------------~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~-----  213 (594)
                      ..|..++..|+|++|+..|+++|+++|+.            +.+|+++|.+|..+|+|++|+.+|++++.+.|..     
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            34777888999999999999999998764            4689999999999999999999999999876532     


Q ss_pred             ------ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007653          214 ------GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (594)
Q Consensus       214 ------~~a~~~l~~a~~~l~~~~~a~~~~~~~i  241 (594)
                            ..++.+++.+...+++++.+...+...+
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence                  2356778888888888776666665555

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=5.3e-07  Score=78.25  Aligned_cols=80  Identities=11%  Similarity=0.119  Sum_probs=68.4

Q ss_pred             ccCceeeec---cccchhhhhhcceeeeecccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007653          150 LNSMSCYLK---TKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (594)
Q Consensus       150 ~N~a~~~~k---lg~y~eAi~~~~~AL~ldP~~-~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~  225 (594)
                      ++.|.|+.+   ..+..++|..++.+++.+|.+ .+++|++|.+|+++|+|++|+.+++++|+++|+|..+......++.
T Consensus        39 F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~  118 (124)
T d2pqrb1          39 FNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  118 (124)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence            444444443   356789999999999999976 5899999999999999999999999999999999999998888888


Q ss_pred             Hhhh
Q 007653          226 ILMK  229 (594)
Q Consensus       226 ~l~~  229 (594)
                      ++.+
T Consensus       119 ~~~k  122 (124)
T d2pqrb1         119 KIQK  122 (124)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.4e-07  Score=89.92  Aligned_cols=105  Identities=10%  Similarity=0.003  Sum_probs=88.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeeccc----
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----  178 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~----  178 (594)
                      ++....++.+++..|+|++|+.+|+++|++.|..+.    .....++.++|.||..+|+|++|+..|.+++++.+.    
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            456666788999999999999999999999887632    112347889999999999999999999999987654    


Q ss_pred             --chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007653          179 --NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (594)
Q Consensus       179 --~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P  211 (594)
                        ...++++++.+|...|++..|+..+.+++.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence              356889999999999999999999999987643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=1.6e-06  Score=75.09  Aligned_cols=101  Identities=8%  Similarity=0.006  Sum_probs=77.1

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhccccccc---ccchhHHHHHHHhhhccccccccccceeeeeecccCceeee
Q 007653           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE---GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (594)
Q Consensus        81 ~~~el~aa~~~~~a~~~~~~~~a~~l~~~Gn~~~~~---g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~  157 (594)
                      .++++....+++.+.+.-.+ .++..++.|..+.+.   .+..++|..++++++.+|...        ..|++++|.+|+
T Consensus        14 ~~~el~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~--------rd~lY~Lav~yy   84 (124)
T d2pqrb1          14 YPQQLEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY   84 (124)
T ss_dssp             CHHHHHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCC-CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH--------HHHHHHHHHHHH
Confidence            44555555666666643222 367788888777654   456799999999999887653        248999999999


Q ss_pred             ccccchhhhhhcceeeeecccchHHHHHhccch
Q 007653          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (594)
Q Consensus       158 klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al  190 (594)
                      ++|+|++|+.+++++|+++|+|..+...+-.+.
T Consensus        85 klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          85 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            999999999999999999999998876554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.69  E-value=9e-07  Score=81.83  Aligned_cols=101  Identities=12%  Similarity=0.068  Sum_probs=84.7

Q ss_pred             ecccCceeeeccccchhhhhhcceeeeeccc----------------------chHHHHHhccchhhhhhHHHHhhhccc
Q 007653          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----------------------NVKALYRRGQAYKDIGRLEEAVSDLSN  205 (594)
Q Consensus       148 ~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~----------------------~~ka~~~rg~al~~lg~~~eAi~~lek  205 (594)
                      .++++|..+...|++++|+..|.+||.+.+.                      +..++.+++.++..+|+|++|+.+|++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            4566777788899999999999999987543                      346889999999999999999999999


Q ss_pred             ccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhh
Q 007653          206 AHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV  248 (594)
Q Consensus       206 Al~l~P~~~~a~~~l~~a~~~l~~~~~a~~~~~~~iee~~e~~  248 (594)
                      ++.++|.+..++..+..+...+++...+...|........++-
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL  135 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  135 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988877777666654444433

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=2.2e-06  Score=84.81  Aligned_cols=120  Identities=6%  Similarity=-0.190  Sum_probs=65.8

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccc
Q 007653          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (594)
Q Consensus       100 ~~~a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~  179 (594)
                      +.....+...+......|++++|...|.++|...|...        ..+|...+.+..+.+++++|+..|.++++..|.+
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            33344455555555566666666666666666555442        1234555555555666666666666666666666


Q ss_pred             hHHHHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007653          180 VKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (594)
Q Consensus       180 ~ka~~~rg~al~-~lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~l  227 (594)
                      ...|...+.... ..|+++.|...|++++...|++..++..+.......
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            665555554432 335556666666666666666655555554444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=1.6e-05  Score=78.47  Aligned_cols=133  Identities=5%  Similarity=-0.101  Sum_probs=104.0

Q ss_pred             HHHHHhhhhcccccchH-HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceee-eccccch
Q 007653           86 ATMRARIDAQMNYEFNA-AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTKQYD  163 (594)
Q Consensus        86 ~aa~~~~~a~~~~~~~~-a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~-~klg~y~  163 (594)
                      +.+..-+.+.+...+.. ...+...++...+.++++.|...|.++++..|....         .|.+.+... ...++++
T Consensus       116 ~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------~~~~~a~~e~~~~~~~~  186 (308)
T d2onda1         116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDKS  186 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCHH
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhccCHH
Confidence            34445555555545443 345778888889999999999999999999888753         566666654 3458899


Q ss_pred             hhhhhcceeeeecccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh----HHHHHhHHHHHh
Q 007653          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKEIL  227 (594)
Q Consensus       164 eAi~~~~~AL~ldP~~~ka~~~rg~al~~lg~~~eAi~~lekAl~l~P~~~~----a~~~l~~a~~~l  227 (594)
                      .|...|++++..+|+++..+...+..+...|+++.|...|++|+...|.++.    ++..+...+...
T Consensus       187 ~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999998876543    555555444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.60  E-value=0.00011  Score=70.04  Aligned_cols=106  Identities=17%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeeeeccc
Q 007653          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAK  178 (594)
Q Consensus       103 a~~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~ldP~  178 (594)
                      ++++.++|..++.+++|.+|+.+|+++.+..  +         ..+++++|.+|..    .+++..|+..+..+.  +..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~---------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~--~~~   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK--E---------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLN   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C---------HHHHHHHHHHHHcCCCcchhHHHHHHhhcccc--ccc
Confidence            5689999999999999999999999998753  3         2378999999987    678999999998876  556


Q ss_pred             chHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007653          179 NVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (594)
Q Consensus       179 ~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a  223 (594)
                      ++.+.+++|..+..    ...++.|+..|+++....+  ..+...+...
T Consensus        69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~  115 (265)
T d1ouva_          69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGI  115 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccc
Confidence            88888888887764    4678899999999887643  3444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.71  E-value=0.0011  Score=56.93  Aligned_cols=91  Identities=12%  Similarity=-0.032  Sum_probs=66.1

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeeeecccch
Q 007653          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNV  180 (594)
Q Consensus       105 ~l~~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~ldP~~~  180 (594)
                      ++..+|.  ....++++|+..|+++.+....           .+++++|.+|..    ..++.+|+++|+++.+  ..++
T Consensus        27 a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~-----------~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~--~g~~   91 (133)
T d1klxa_          27 GCLSLVS--NSQINKQKLFQYLSKACELNSG-----------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACG--LNDQ   91 (133)
T ss_dssp             HHHHHHT--CTTSCHHHHHHHHHHHHHTTCH-----------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCH
T ss_pred             hhhhhcc--ccccCHHHHHHHHhhhhcccch-----------hhhhhHHHhhhhccccchhhHHHHHHHhhhhc--cCcc
Confidence            3444443  3446788899999998775322           256778887765    4578899999998874  4678


Q ss_pred             HHHHHhccchhh----hhhHHHHhhhcccccccC
Q 007653          181 KALYRRGQAYKD----IGRLEEAVSDLSNAHEVS  210 (594)
Q Consensus       181 ka~~~rg~al~~----lg~~~eAi~~lekAl~l~  210 (594)
                      .+.+++|.+|..    ..++++|+.+|++|.++.
T Consensus        92 ~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          92 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            888999988876    457888999988887653

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.51  E-value=0.0015  Score=55.95  Aligned_cols=94  Identities=16%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeeccccchhhhhhcceeeeecccchHHHHHhccchhh---
Q 007653          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD---  192 (594)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~klg~y~eAi~~~~~AL~ldP~~~ka~~~rg~al~~---  192 (594)
                      ..++++|+.+|+++.+.....           ++++++.  ....++++|+..+.++.+  ..++.+++++|..|..   
T Consensus         6 ~kd~~~A~~~~~kaa~~g~~~-----------a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~   70 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNEMF-----------GCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKY   70 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT-----------HHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSS
T ss_pred             ccCHHHHHHHHHHHHHCCChh-----------hhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccc
Confidence            468999999999998764322           4556654  345789999999999874  5789999999999875   


Q ss_pred             -hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007653          193 -IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (594)
Q Consensus       193 -lg~~~eAi~~lekAl~l~P~~~~a~~~l~~a~~~  226 (594)
                       ..++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        71 ~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          71 VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence             45789999999999875  567777888777543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.43  E-value=0.00025  Score=67.28  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             HHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeecccCceeeec----cccchhhhhhcceeee
Q 007653          103 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLA  174 (594)
Q Consensus       103 a~~l~~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N~a~~~~k----lg~y~eAi~~~~~AL~  174 (594)
                      ...+..+|..+..    ..+...+...|.++.+..  +         ..+++++|.+|..    .+++++|+.+|.++.+
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g--~---------~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~  210 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--D---------SPGCFNAGNMYHHGEGATKNFKEALARYSKACE  210 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhcccccc--c---------cccccchhhhcccCcccccchhhhhhhHhhhhc
Confidence            3445555655543    444556666677766532  2         2267788888876    6688888888888876


Q ss_pred             ecccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007653          175 YDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (594)
Q Consensus       175 ldP~~~ka~~~rg~al~~----lg~~~eAi~~lekAl~l~P~~~~a~~~l~~  222 (594)
                      .  .++.+++++|.+|..    .+++++|+.+|++|....  +..+...|.+
T Consensus       211 ~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~  258 (265)
T d1ouva_         211 L--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQ  258 (265)
T ss_dssp             T--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHT
T ss_pred             c--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHH
Confidence            5  578888888888875    347888888888887664  3334444443