Citrus Sinensis ID: 007654

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----

MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRSSNLV

cHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHccHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccEEcccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc

cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEHHHEHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcEEEEHHHHcccccccccHHHccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccc

MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVgnngetyfNTAALVSCVqnfpksrgpvvGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIrpvgghrqvrpsdsssfTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSfflertdpaeeallskpenmepgksnqetdEVILSevedekpkdvdllpaSERRKRIAQLQARLFHAAAEGAVRVkrrrgphrgedfTLTQALIKADFWLIFFSLLLgsgsgltvidnlgqmsqslgydnthIFVSMISIWNFLgrvgggyfseiivrdyayprpVAMAVAQFVMAIGHIFlgmgwpgaMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFltlanpagslVFSGLIASYIydheaekqhqphhhllnagsiftsmprvdeplkcegsICYFLTSMIMSGLCIVAVILSMILVHRTTNvyshlygksrssnlv

MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALlskpenmepgksnqeTDEVIlsevedekpkdvdllpasERRKRIAQLQARLFHAaaegavrvkrrrgphrgeDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNvyshlygksrssnlv

MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHtviiiftvilfvllfipivipiilsfflERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFslllgsgsglTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRSSNLV

*****ERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVR***SSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLER******************************************************LQARLFHAAAEGAVRVK******RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLY*********

************NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTD******************************************************************************DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEK**********AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKS******

MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPEN**********DEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG********

**KFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLE*****************************************************************EGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQP*****************DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		594	2.2.26 [Sep-21-2011]
Q6CGU8		486	Probable transporter MCH1	yes	no	0.358	0.438	0.250	2e-05

>sp\|Q6CGU8\|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1	Back alignment and function desciption

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 38/251 (15%)

Query: 321 RIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTV 380
           R A+  A      AE +         H G   TL +       WL     +   G     
Sbjct: 234 RTAESMASELRKKAEASTDCNCDGPGHEGA--TLKEFFTDKTAWLFLLCFVFIGGPFEMF 291

Query: 381 IDNLGQMSQSLGYDN-------THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 433
            +N+G +  ++  +N       TH  VS+ + ++ + R+  G+ SE +  +    RPV +
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTH--VSLFATFSTVSRLVVGFSSEAM--ESHVSRPVLL 347

Query: 434 AVAQFVMAIGHIFLGMG----WPGAMY--VGTLLIGLGYGAHWAIVPAAASELFGLKKFG 487
           +V   V A  H+ +  G    +  A Y  V T++ G  YG+ + +VP   ++++G+   G
Sbjct: 348 SVIALVAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLG 407

Query: 488 ALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCE 547
            ++    LA   GSL + GL+ + +YD  +E         +  G    SM +V     C 
Sbjct: 408 TIWGSFILALAVGSLGY-GLLFAKVYDAASE---------VGVG----SMSQV-----CS 448

Query: 548 GSICYFLTSMI 558
           G  CY LT +I
Sbjct: 449 GVHCYGLTFVI 459

Probable transporter.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		594
255536871		589	conserved hypothetical protein [Ricinus	0.991	1.0	0.842	0.0
225451469		591	PREDICTED: uncharacterized protein LOC10	0.993	0.998	0.813	0.0
147853498		591	hypothetical protein VITISV_016786 [Viti	0.993	0.998	0.812	0.0
225451471		591	PREDICTED: uncharacterized protein LOC10	0.993	0.998	0.805	0.0
312282435		579	unnamed protein product [Thellungiella h	0.961	0.986	0.786	0.0
297807437		579	nodulin family protein [Arabidopsis lyra	0.961	0.986	0.772	0.0
18395988		584	major facilitator protein [Arabidopsis t	0.966	0.982	0.776	0.0
15241312		579	major facilitator protein [Arabidopsis t	0.961	0.986	0.769	0.0
297828556		583	nodulin family protein [Arabidopsis lyra	0.966	0.984	0.769	0.0
356570169		587	PREDICTED: uncharacterized protein LOC10	0.981	0.993	0.744	0.0

>gi\|255536871\|ref\|XP_002509502.1\| conserved hypothetical protein [Ricinus communis] gi\|223549401\|gb\|EEF50889.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  990 bits (2560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/590 (84%), Positives = 541/590 (91%), Gaps = 1/590 (0%)

Query: 1   MGKFQERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAK 60
           MG+ QER  +F NNRWLVFVAAMWIQSCAG+GYLFGSISPVIKSSLNYNQ+Q+A LGVAK
Sbjct: 1   MGRLQERLYAFINNRWLVFVAAMWIQSCAGVGYLFGSISPVIKSSLNYNQRQLASLGVAK 60

Query: 61  DLGDSVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVG 120
           DLGDSVGFLAGSL E+LP+WGALLVGALQN +GYGWVWL+VTG+APVLPLW MCILIFVG
Sbjct: 61  DLGDSVGFLAGSLSEILPLWGALLVGALQNLVGYGWVWLVVTGKAPVLPLWVMCILIFVG 120

Query: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMV 180
           NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+P+HA+LIFMV
Sbjct: 121 NNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPNHASLIFMV 180

Query: 181 AVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNH 240
           AVGPAMVV+ LMFIIRPVGGHRQVRPSD +SFTF+YSVCLLLAAYLMGVML+EDLVDL+H
Sbjct: 181 AVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLLEDLVDLSH 240

Query: 241 TVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILS 300
           T+II+FTV+LFVLL +PIVIPI LSFF E  DPAEE LL + E  E GKS Q+  EVILS
Sbjct: 241 TLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGKSEQDGHEVILS 300

Query: 301 EVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIK 360
           EVEDEKPK+VDLLPASER+KRIAQLQ +LF AAAEGAVR+KRRRGPHRGEDFTL QALIK
Sbjct: 301 EVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRGEDFTLMQALIK 360

Query: 361 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420
           ADFWLIF SLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI
Sbjct: 361 ADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEI 420

Query: 421 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 480
           IVRDYAYPRP+AMAVAQFVMAIGH+F    WPG MY+GTLLIGLGYGAHWAIVPAAASEL
Sbjct: 421 IVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLGYGAHWAIVPAAASEL 480

Query: 481 FGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRV 540
           FGLKKFGALYNFLTLANPAGSLVFSGLIAS IYD EAE+Q    HH+  AGS+F+ +   
Sbjct: 481 FGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAH-EHHMRTAGSLFSGLFGP 539

Query: 541 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 590
           DEPLKCEG++CYFLTSMIMSG CI+AVILS+ILVHRT  VY++LYGKSR+
Sbjct: 540 DEPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYGKSRT 589

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225451469\|ref\|XP_002270737.1\| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi\|296082334\|emb\|CBI21339.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147853498\|emb\|CAN82292.1\| hypothetical protein VITISV_016786 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225451471\|ref\|XP_002270809.1\| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi\|296082332\|emb\|CBI21337.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|312282435\|dbj\|BAJ34083.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|297807437\|ref\|XP_002871602.1\| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi\|297317439\|gb\|EFH47861.1\| nodulin family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18395988|ref|NP_566157.1| major facilitator protein [Arabidopsis thaliana] gi|6091732|gb|AAF03444.1|AC010797_20 unknown protein [Arabidopsis thaliana] gi|6513938|gb|AAF14842.1|AC011664_24 unknown protein [Arabidopsis thaliana] gi|22136036|gb|AAM91600.1| unknown protein [Arabidopsis thaliana] gi|23197760|gb|AAN15407.1| unknown protein [Arabidopsis thaliana] gi|332640216|gb|AEE73737.1| major facilitator protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|15241312\|ref\|NP_196916.1\| major facilitator protein [Arabidopsis thaliana] gi\|9757793\|dbj\|BAB08291.1\| nodulin-like protein [Arabidopsis thaliana] gi\|332004607\|gb\|AED91990.1\| major facilitator protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297828556\|ref\|XP_002882160.1\| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi\|297328000\|gb\|EFH58419.1\| nodulin family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356570169\|ref\|XP_003553263.1\| PREDICTED: uncharacterized protein LOC100796700 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		594
TAIR\|locus:2078643		584	AT3G01930 [Arabidopsis thalian	0.966	0.982	0.736	7.5e-231
TAIR\|locus:2174683		579	AT5G14120 [Arabidopsis thalian	0.961	0.986	0.730	2e-230
TAIR\|locus:2159752		540	AT5G50520 [Arabidopsis thalian	0.375	0.412	0.619	5.7e-139
TAIR\|locus:2832385		540	AT5G50630 [Arabidopsis thalian	0.375	0.412	0.619	5.7e-139
TAIR\|locus:2059829		546	AT2G16660 [Arabidopsis thalian	0.388	0.423	0.380	4.7e-90
TAIR\|locus:2046238		577	AT2G28120 [Arabidopsis thalian	0.383	0.395	0.437	3e-89
TAIR\|locus:2056103		601	AT2G39210 "AT2G39210" [Arabido	0.390	0.386	0.423	3e-89
TAIR\|locus:2116855		567	AT4G34950 [Arabidopsis thalian	0.306	0.320	0.406	2.4e-83
TAIR\|locus:2198938		561	AT1G80530 "AT1G80530" [Arabido	0.370	0.392	0.363	2.2e-82
TAIR\|locus:2040809		525	AT2G34350 [Arabidopsis thalian	0.383	0.434	0.345	3.7e-74

TAIR\|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2227 (789.0 bits), Expect = 7.5e-231, P = 7.5e-231
 Identities = 435/591 (73%), Positives = 484/591 (81%)

Query:     5 QERFVSFFNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGD 64
             +ER  SF NNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQ++RLGVAKDLGD
Sbjct:     6 RERVKSFINNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQLSRLGVAKDLGD 65

Query:    65 SVGFLAGSLCEVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGE 124
             SVGFLAG+L E+LP+W ALLVG++QN +GYGWVWLIVTGRAP+LPLWAMCILIFVGNNGE
Sbjct:    66 SVGFLAGTLSEILPLWAALLVGSVQNLVGYGWVWLIVTGRAPILPLWAMCILIFVGNNGE 125

Query:   125 TYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGP 184
             TYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D A+LIFMVAV P
Sbjct:   126 TYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAP 185

Query:   185 AMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHXXXX 244
             ++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLVED +DL+H    
Sbjct:   186 SVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIII 245

Query:   245 XXXXXXXXXXXXXXXXXXXXXXXXERTDPA---EEALLSKPENMEPGKSN--QETDEVIL 299
                                       TDP    EE LL   +  +PG+S       E+I 
Sbjct:   246 AFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIF 305

Query:   300 SEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALI 359
             SEVEDEKPK+VDLLPA ER KRIAQLQA+L  AAAEGAVRVKRRRGPHRGEDFTLTQAL+
Sbjct:   306 SEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALV 365

Query:   360 KADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSE 419
             KADFWLIFF          TVIDNLGQMSQSLGYDNTH+FVSMISIWNFLGR+GGGYFSE
Sbjct:   366 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSE 425

Query:   420 IIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASE 479
             +IVRDYAYPRPVA+AVAQ VM++GHIF   GWPGAM++GTLLIGLGYGAHWAIVPA ASE
Sbjct:   426 LIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYGAHWAIVPATASE 485

Query:   480 LFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPR 539
             LFGLKKFGALYNFLTLANPAGSLVFSGLIAS IYD EAE+Q Q        GS+F   P 
Sbjct:   486 LFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQ--------GSLFN--P- 534

Query:   540 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 590
              D+ L+C GSICYFLTS+IMSG C++A  LSMILV RT  VY++LYGK+R+
Sbjct:   535 -DDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYGKTRN 584

GO:0005886 "plasma membrane" evidence=ISM

TAIR\|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.88.227.1	annotation not avaliable (585 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		594
pfam06813		248	pfam06813, Nodulin-like, Nodulin-like	1e-108
TIGR00890		377	TIGR00890, 2A0111, oxalate/formate antiporter fami	2e-12
cd06174		352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-05
cd06174		352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04
PTZ00207		591	PTZ00207, PTZ00207, hypothetical protein; Provisio	0.002

>gnl\|CDD\|219187 pfam06813, Nodulin-like, Nodulin-like	Back alignment and domain information

 Score =  323 bits (831), Expect = e-108
 Identities = 111/248 (44%), Positives = 155/248 (62%)

Query: 15  RWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLC 74
           RWL  VAA+WIQS AG  Y F   S  +KSSL Y+Q Q+  LGVAKDLG + G+L+G   
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 75  EVLPIWGALLVGALQNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVS 134
           E LP W  LLVGA   F+GYG  WL VTG+ P LP W +C+ I +  N   +FNTA+LV+
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 135 CVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIALMFI 194
           C++NFP+SRG V+GILKG+AGL  AI TQ+YT I   D ++L+ + A+ P +V +  ++ 
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 195 IRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLL 254
           IRP  G    + S+S  F     + + LA YL+ + ++    DL+         I+ +LL
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240

Query: 255 FIPIVIPI 262
            +P+ +PI
Sbjct: 241 LVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl\|CDD\|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter	Back alignment and domain information

>gnl\|CDD\|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>gnl\|CDD\|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>gnl\|CDD\|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		594
PTZ00207		591	hypothetical protein; Provisional	100.0
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	100.0
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	99.95
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	99.93
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.9
TIGR00892		455	2A0113 monocarboxylate transporter 1.	99.89
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	99.88
PRK11663		434	regulatory protein UhpC; Provisional	99.87
PRK09705		393	cynX putative cyanate transporter; Provisional	99.87
PLN00028		476	nitrate transmembrane transporter; Provisional	99.86
TIGR00893		399	2A0114 d-galactonate transporter.	99.85
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	99.85
PRK03699		394	putative transporter; Provisional	99.84
PRK03545		390	putative arabinose transporter; Provisional	99.82
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	99.82
PRK12307		426	putative sialic acid transporter; Provisional	99.81
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	99.81
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	99.8
PRK05122		399	major facilitator superfamily transporter; Provisi	99.8
TIGR00891		405	2A0112 putative sialic acid transporter.	99.79
TIGR00897		402	2A0118 polyol permease family. This family of prot	99.79
PRK12382		392	putative transporter; Provisional	99.78
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	99.77
TIGR00896		355	CynX cyanate transporter. This family of proteins	99.77
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	99.77
TIGR00895		398	2A0115 benzoate transport.	99.76
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.75
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.73
TIGR00898		505	2A0119 cation transport protein.	99.73
PRK03633		381	putative MFS family transporter protein; Provision	99.73
PRK03893		496	putative sialic acid transporter; Provisional	99.73
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	99.72
PRK10091		382	MFS transport protein AraJ; Provisional	99.72
PRK09528		420	lacY galactoside permease; Reviewed	99.71
PRK10504		471	putative transporter; Provisional	99.7
PRK09874		408	drug efflux system protein MdtG; Provisional	99.7
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.69
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	99.69
PRK10213		394	nepI ribonucleoside transporter; Reviewed	99.69
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	99.69
PRK11646		400	multidrug resistance protein MdtH; Provisional	99.68
TIGR00900		365	2A0121 H+ Antiporter protein.	99.67
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.67
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	99.67
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	99.67
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	99.66
PRK09952		438	shikimate transporter; Provisional	99.66
PRK10642		490	proline/glycine betaine transporter; Provisional	99.66
PRK10406		432	alpha-ketoglutarate transporter; Provisional	99.65
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.65
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	99.64
PRK10489		417	enterobactin exporter EntS; Provisional	99.64
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	99.64
PRK15075		434	citrate-proton symporter; Provisional	99.63
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.63
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	99.62
PRK14995		495	methyl viologen resistance protein SmvA; Provision	99.62
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	99.62
PRK10077		479	xylE D-xylose transporter XylE; Provisional	99.61
PRK11043		401	putative transporter; Provisional	99.61
PRK10054		395	putative transporter; Provisional	99.6
PRK10133		438	L-fucose transporter; Provisional	99.58
PRK10473		392	multidrug efflux system protein MdtL; Provisional	99.56
PRK11652		394	emrD multidrug resistance protein D; Provisional	99.56
PRK11010		491	ampG muropeptide transporter; Validated	99.55
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	99.53
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	99.53
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	99.52
PRK15011		393	sugar efflux transporter B; Provisional	99.52
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.49
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.47
PRK11902		402	ampG muropeptide transporter; Reviewed	99.46
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	99.45
KOG2532		466	consensus Permease of the major facilitator superf	99.42
TIGR00901		356	2A0125 AmpG-related permease.	99.42
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	99.4
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.32
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.3
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	99.28
PRK11195		393	lysophospholipid transporter LplT; Provisional	99.28
PRK15403		413	multidrug efflux system protein MdtM; Provisional	99.24
KOG0569		485	consensus Permease of the major facilitator superf	99.16
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.1
PRK09584		500	tppB putative tripeptide transporter permease; Rev	99.07
PRK09669		444	putative symporter YagG; Provisional	99.05
PRK09848		448	glucuronide transporter; Provisional	99.05
PRK10207		489	dipeptide/tripeptide permease B; Provisional	99.04
KOG2563		480	consensus Permease of the major facilitator superf	99.02
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	98.97
TIGR01299		742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.96
PF13347		428	MFS_2: MFS/sugar transport protein	98.91
PRK10504		471	putative transporter; Provisional	98.9
KOG2533		495	consensus Permease of the major facilitator superf	98.9
PRK10429		473	melibiose:sodium symporter; Provisional	98.9
PRK10213		394	nepI ribonucleoside transporter; Reviewed	98.85
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	98.83
TIGR00710		385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.82
TIGR00805		633	oat sodium-independent organic anion transporter.	98.8
PRK10054		395	putative transporter; Provisional	98.79
PF07690		352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.79
TIGR00924		475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.79
TIGR00900		365	2A0121 H+ Antiporter protein.	98.76
PRK11663		434	regulatory protein UhpC; Provisional	98.76
PRK10091		382	MFS transport protein AraJ; Provisional	98.76
PRK09584		500	tppB putative tripeptide transporter permease; Rev	98.74
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	98.74
PRK15403		413	multidrug efflux system protein MdtM; Provisional	98.74
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.71
cd06174		352	MFS The Major Facilitator Superfamily (MFS) is a l	98.7
PRK03699		394	putative transporter; Provisional	98.66
TIGR00893		399	2A0114 d-galactonate transporter.	98.64
PRK09528		420	lacY galactoside permease; Reviewed	98.64
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.63
PRK15462		493	dipeptide/tripeptide permease D; Provisional	98.63
PRK15402		406	multidrug efflux system translocase MdfA; Provisio	98.63
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	98.63
PRK11102		377	bicyclomycin/multidrug efflux system; Provisional	98.62
TIGR00712		438	glpT glycerol-3-phosphate transporter. This model	98.62
PRK11652		394	emrD multidrug resistance protein D; Provisional	98.62
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.61
PRK03545		390	putative arabinose transporter; Provisional	98.61
PRK11195		393	lysophospholipid transporter LplT; Provisional	98.6
TIGR00788		468	fbt folate/biopterin transporter. The only functio	98.6
KOG3764		464	consensus Vesicular amine transporter [Intracellul	98.58
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	98.57
PRK10489		417	enterobactin exporter EntS; Provisional	98.56
PRK09874		408	drug efflux system protein MdtG; Provisional	98.56
TIGR00890		377	2A0111 Oxalate/Formate Antiporter.	98.55
TIGR00711		485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.54
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.53
TIGR00892		455	2A0113 monocarboxylate transporter 1.	98.53
PRK11273		452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.51
TIGR02332		412	HpaX 4-hydroxyphenylacetate permease. This protein	98.51
TIGR00886		366	2A0108 nitrite extrusion protein (nitrite facilita	98.5
PRK10473		392	multidrug efflux system protein MdtL; Provisional	98.5
TIGR00891		405	2A0112 putative sialic acid transporter.	98.5
PRK10207		489	dipeptide/tripeptide permease B; Provisional	98.49
PRK11043		401	putative transporter; Provisional	98.49
PRK11551		406	putative 3-hydroxyphenylpropionic transporter MhpT	98.48
TIGR00895		398	2A0115 benzoate transport.	98.48
PRK15462		493	dipeptide/tripeptide permease D; Provisional	98.48
PRK14995		495	methyl viologen resistance protein SmvA; Provision	98.47
KOG0254		513	consensus Predicted transporter (major facilitator	98.46
TIGR00881		379	2A0104 phosphoglycerate transporter family protein	98.46
PRK12382		392	putative transporter; Provisional	98.45
TIGR00897		402	2A0118 polyol permease family. This family of prot	98.43
TIGR00882		396	2A0105 oligosaccharide:H+ symporter.	98.41
PRK11646		400	multidrug resistance protein MdtH; Provisional	98.37
PRK03893		496	putative sialic acid transporter; Provisional	98.36
PRK09705		393	cynX putative cyanate transporter; Provisional	98.35
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	98.35
PRK11462		460	putative transporter; Provisional	98.34
PRK12307		426	putative sialic acid transporter; Provisional	98.33
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	98.32
PRK09556		467	uhpT sugar phosphate antiporter; Reviewed	98.31
TIGR00896		355	CynX cyanate transporter. This family of proteins	98.26
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.26
TIGR00903		368	2A0129 major facilitator 4 family protein. This fa	98.26
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.25
TIGR00879		481	SP MFS transporter, sugar porter (SP) family. This	98.24
PRK05122		399	major facilitator superfamily transporter; Provisi	98.23
PTZ00207		591	hypothetical protein; Provisional	98.22
PLN00028		476	nitrate transmembrane transporter; Provisional	98.17
KOG0253		528	consensus Synaptic vesicle transporter SV2 (major	98.15
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.14
COG2270		438	Permeases of the major facilitator superfamily [Ge	98.12
PRK03633		381	putative MFS family transporter protein; Provision	98.12
COG2814		394	AraJ Arabinose efflux permease [Carbohydrate trans	98.11
PRK10077		479	xylE D-xylose transporter XylE; Provisional	98.11
PF06609		599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.11
PRK15034		462	nitrate/nitrite transport protein NarU; Provisiona	98.1
PRK11010		491	ampG muropeptide transporter; Validated	98.06
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	98.05
TIGR00899		375	2A0120 sugar efflux transporter. This family of pr	98.05
TIGR00894		465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.05
PRK10642		490	proline/glycine betaine transporter; Provisional	98.01
PRK15011		393	sugar efflux transporter B; Provisional	97.96
PRK11128		382	putative 3-phenylpropionic acid transporter; Provi	97.95
TIGR00902		382	2A0127 phenyl proprionate permease family protein.	97.95
PRK09952		438	shikimate transporter; Provisional	97.89
TIGR00885		410	fucP L-fucose:H+ symporter permease. This family d	97.87
TIGR00898		505	2A0119 cation transport protein.	97.83
TIGR00887		502	2A0109 phosphate:H+ symporter. This model represen	97.82
PRK10406		432	alpha-ketoglutarate transporter; Provisional	97.78
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.77
TIGR00805		633	oat sodium-independent organic anion transporter.	97.76
TIGR00901		356	2A0125 AmpG-related permease.	97.76
TIGR00883		394	2A0106 metabolite-proton symporter. This model rep	97.7
PRK11902		402	ampG muropeptide transporter; Reviewed	97.68
TIGR02718		390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.66
KOG4686		459	consensus Predicted sugar transporter [Carbohydrat	97.65
TIGR00889		418	2A0110 nucleoside transporter. This family of prot	97.63
PRK15075		434	citrate-proton symporter; Provisional	97.61
PRK10133		438	L-fucose transporter; Provisional	97.55
TIGR00880		141	2_A_01_02 Multidrug resistance protein.	97.54
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.53
TIGR00806		511	rfc RFC reduced folate carrier. Proteins of the RF	97.46
TIGR01301		477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.45
COG2211		467	MelB Na+/melibiose symporter and related transport	97.39
COG2271		448	UhpC Sugar phosphate permease [Carbohydrate transp	97.34
KOG3764		464	consensus Vesicular amine transporter [Intracellul	97.28
PF05977		524	MFS_3: Transmembrane secretion effector; InterPro:	97.26
KOG1330		493	consensus Sugar transporter/spinster transmembrane	97.23
KOG0255		521	consensus Synaptic vesicle transporter SVOP and re	97.19
KOG2533		495	consensus Permease of the major facilitator superf	97.08
TIGR00792		437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.01
TIGR00926		654	2A1704 Peptide:H+ symporter (also transports b-lac	96.95
PF01306		412	LacY_symp: LacY proton/sugar symporter; InterPro:	96.94
KOG0252		538	consensus Inorganic phosphate transporter [Inorgan	96.92
COG2807		395	CynX Cyanate permease [Inorganic ion transport and	96.87
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.62
TIGR00788		468	fbt folate/biopterin transporter. The only functio	96.58
COG3104		498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.58
KOG2615		451	consensus Permease of the major facilitator superf	96.5
PF03825		400	Nuc_H_symport: Nucleoside H+ symporter	96.4
KOG0254		513	consensus Predicted transporter (major facilitator	96.37
TIGR01272		310	gluP glucose/galactose transporter. Disruption of	96.32
KOG2504		509	consensus Monocarboxylate transporter [Carbohydrat	96.28
PRK09669		444	putative symporter YagG; Provisional	96.28
PRK09848		448	glucuronide transporter; Provisional	96.16
COG2223		417	NarK Nitrate/nitrite transporter [Inorganic ion tr	96.13
KOG2615		451	consensus Permease of the major facilitator superf	95.83
PF01770		412	Folate_carrier: Reduced folate carrier; InterPro:	95.82
PF11700		477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.45
COG2270		438	Permeases of the major facilitator superfamily [Ge	95.2
PRK10429		473	melibiose:sodium symporter; Provisional	95.05
PF13347		428	MFS_2: MFS/sugar transport protein	94.91
PF03137		539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.52
KOG0569		485	consensus Permease of the major facilitator superf	94.48
KOG2816		463	consensus Predicted transporter ADD1 (major facili	94.36
PF00083		451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.35
KOG1330		493	consensus Sugar transporter/spinster transmembrane	94.17
COG0477		338	ProP Permeases of the major facilitator superfamil	93.93
KOG2325		488	consensus Predicted transporter/transmembrane prot	93.7
KOG2532		466	consensus Permease of the major facilitator superf	93.38
COG2211		467	MelB Na+/melibiose symporter and related transport	92.93
PF03209		403	PUCC: PUCC protein; InterPro: IPR004896 This prote	92.61
PF00854		372	PTR2: POT family; InterPro: IPR000109 This entry r	92.13
PF05631		354	DUF791: Protein of unknown function (DUF791); Inte	91.96
PRK03612		521	spermidine synthase; Provisional	91.55
COG0738		422	FucP Fucose permease [Carbohydrate transport and m	91.5
PF05631		354	DUF791: Protein of unknown function (DUF791); Inte	90.56
PRK11462		460	putative transporter; Provisional	90.52
KOG2816		463	consensus Predicted transporter ADD1 (major facili	90.28
KOG4686		459	consensus Predicted sugar transporter [Carbohydrat	89.27
PF05978		156	UNC-93: Ion channel regulatory protein UNC-93; Int	89.08
KOG3098		461	consensus Uncharacterized conserved protein [Funct	87.72
PF06813		250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	87.67
COG0477		338	ProP Permeases of the major facilitator superfamil	85.97
KOG3098		461	consensus Uncharacterized conserved protein [Funct	85.79
PF05978		156	UNC-93: Ion channel regulatory protein UNC-93; Int	84.98
PF03092		433	BT1: BT1 family; InterPro: IPR004324 Members of th	80.72

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=4.7e-78  Score=673.42  Aligned_cols=506  Identities=18%  Similarity=0.277  Sum_probs=425.0

Q ss_pred             cchhHHHHHHHHHHHHhcCcccccccccHHHHhhhCCChhhHHHHHHHHhhhhhcccchhhhhchhhhHHHHHHHHHHHH
Q 007654           12 FNNRWLVFVAAMWIQSCAGIGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSVGFLAGSLCEVLPIWGALLVGALQNF   91 (594)
Q Consensus        12 ~~~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~~G~~~gi~~G~l~D~~gp~~~l~iG~~~~~   91 (594)
                      ..+||++++++++++.++|+.|.|++|+++|++++|+||+|+++++..+...+.+.+++|.++||+|||.++++|+++.+
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999865555555667799999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHhhccccchhhhhHHHHHHHhcCCCCCceehhhHhhhhhhHHHHHHHHHHhcCC
Q 007654           92 IGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAP  171 (594)
Q Consensus        92 ~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f~~  171 (594)
                      +||+++|+++++.+. .++|+++++.++.|+|++++++++++++++|||++||+++|+.+++.|+|++++++++.+++.+
T Consensus       103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~  181 (591)
T PTZ00207        103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD  181 (591)
T ss_pred             HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888774 3799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHhhheeecccCCCCc---C---CCCCCC-----------------chhHHHHHHHHHHHHHHH
Q 007654          172 DHANLIFMVAVGPAMVVIALMFIIRPVGGHRQ---V---RPSDSS-----------------SFTFIYSVCLLLAAYLMG  228 (594)
Q Consensus       172 ~~~~fll~la~~~~~v~l~~~~~ir~~~~~~~---~---~~~~~~-----------------~f~~~~~~~~~l~~~l~~  228 (594)
                      |.+.+++++++.+..++++...++|.+|+++.   +   +++|+.                 +|..++.+++.+++|+++
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~  261 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL  261 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999997765432   1   122222                 899999999999999999


Q ss_pred             HHHhhhccccchhHHHHHHHHHH-HHhhhc-chhhhhhcccccCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCC
Q 007654          229 VMLVEDLVDLNHTVIIIFTVILF-VLLFIP-IVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEK  306 (594)
Q Consensus       229 ~~~~~~~~~~s~~~~~~~~~i~~-~ll~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (594)
                      +++++++.+++++.+..++++++ ++++.| +++|++.  ....++.  +    ++   +++ +    +     +..+++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~~~--~----~~---~~~-~----~-----~~~~~~  320 (591)
T PTZ00207        262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKRPH--D----DS---DGK-A----K-----EHVEAG  320 (591)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCCcC--C----Cc---ccc-c----c-----cccccc
Confidence            99999999999998888888777 777888 8888864  2111100  0    00   000 0    0     000000


Q ss_pred             CCccCCCchhHHHHHHHHHHHHHHhhhhhhh-hhhhcc-CCCCCCCCCCHHHHhhcHHHHHHHHHHHhhhcchhheecch
Q 007654          307 PKDVDLLPASERRKRIAQLQARLFHAAAEGA-VRVKRR-RGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNL  384 (594)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~p~~~~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~  384 (594)
                      ++. +                     +.+++ .+.+.+ ..|++++  |++|++++.|||++|+.++|+.|+|++++||+
T Consensus       321 ~~~-~---------------------~~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~  376 (591)
T PTZ00207        321 EEV-S---------------------AAEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNA  376 (591)
T ss_pred             ccc-c---------------------ccccccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecH
Confidence            000 0                     00000 000111 2266554  99999999999999999999999999999999


Q ss_pred             HHHHHHh-CCC-cc--hh-HHHHHHHhhhhhcccccchhhhhhhccC----CchhHHHHHHHHHHHHHHHHHhccCc-hh
Q 007654          385 GQMSQSL-GYD-NT--HI-FVSMISIWNFLGRVGGGYFSEIIVRDYA----YPRPVAMAVAQFVMAIGHIFLGMGWP-GA  454 (594)
Q Consensus       385 ~~i~~~~-g~~-~~--~~-~Vsl~si~n~~GRl~~G~lsD~l~r~~~----~~r~~~l~~~~~~~~~~~ll~~~~~~-~~  454 (594)
                      +||++++ |++ +.  .+ +||++|++|++||+++|++| .+.+++.    +||+.++++.++ +.+++++++...| ..
T Consensus       377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~  454 (591)
T PTZ00207        377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAA  454 (591)
T ss_pred             HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccH
Confidence            9999999 773 33  33 89999999999999999999 5555554    999999999988 7778777666555 78


Q ss_pred             HHHHHHHHHhhhhhccchhHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHHhhhhcccCcccccccccccc
Q 007654          455 MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIF  534 (594)
Q Consensus       455 l~~~~~liG~~~G~~~~l~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd~~~~~~~~~~~~~~~~~~~~  534 (594)
                      ++++++++|+|||+.|+++|++++|+|| ||+|+|||+++++.++|+++||..++|++||++++|+              
T Consensus       455 L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~--------------  519 (591)
T PTZ00207        455 LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL--------------  519 (591)
T ss_pred             hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC--------------
Confidence            9999999999999999999999999999 9999999999999999999999999999999999763              


Q ss_pred             cCCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 007654          535 TSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGK  587 (594)
Q Consensus       535 ~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~a~~ls~~l~~r~r~~~~~~~~~  587 (594)
                             ++.+|.|++||+.+|+|++++|++|+++++++|.|+||+|++..+.
T Consensus       520 -------~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~~  565 (591)
T PTZ00207        520 -------GQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQYRRLCLKALEE  565 (591)
T ss_pred             -------CCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeehHHHHHHHHHH
Confidence                   3569999999999999999999999999999999999999855443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>PRK10504 putative transporter; Provisional	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PRK10213 nepI ribonucleoside transporter; Reviewed	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>PRK10054 putative transporter; Provisional	Back alignment and domain information

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms	Back alignment and domain information

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial	Back alignment and domain information

>TIGR00900 2A0121 H+ Antiporter protein	Back alignment and domain information

>PRK11663 regulatory protein UhpC; Provisional	Back alignment and domain information

>PRK10091 MFS transport protein AraJ; Provisional	Back alignment and domain information

>PRK09584 tppB putative tripeptide transporter permease; Reviewed	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>PRK15403 multidrug efflux system protein MdtM; Provisional	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters	Back alignment and domain information

>PRK03699 putative transporter; Provisional	Back alignment and domain information

>TIGR00893 2A0114 d-galactonate transporter	Back alignment and domain information

>PRK09528 lacY galactoside permease; Reviewed	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PRK15402 multidrug efflux system translocase MdfA; Provisional	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>PRK11102 bicyclomycin/multidrug efflux system; Provisional	Back alignment and domain information

>TIGR00712 glpT glycerol-3-phosphate transporter	Back alignment and domain information

>PRK11652 emrD multidrug resistance protein D; Provisional	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>PRK03545 putative arabinose transporter; Provisional	Back alignment and domain information

>PRK11195 lysophospholipid transporter LplT; Provisional	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>PRK10489 enterobactin exporter EntS; Provisional	Back alignment and domain information

>PRK09874 drug efflux system protein MdtG; Provisional	Back alignment and domain information

>TIGR00890 2A0111 Oxalate/Formate Antiporter	Back alignment and domain information

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>TIGR00892 2A0113 monocarboxylate transporter 1	Back alignment and domain information

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional	Back alignment and domain information

>TIGR02332 HpaX 4-hydroxyphenylacetate permease	Back alignment and domain information

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)	Back alignment and domain information

>PRK10473 multidrug efflux system protein MdtL; Provisional	Back alignment and domain information

>TIGR00891 2A0112 putative sialic acid transporter	Back alignment and domain information

>PRK10207 dipeptide/tripeptide permease B; Provisional	Back alignment and domain information

>PRK11043 putative transporter; Provisional	Back alignment and domain information

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	Back alignment and domain information

>TIGR00895 2A0115 benzoate transport	Back alignment and domain information

>PRK15462 dipeptide/tripeptide permease D; Provisional	Back alignment and domain information

>PRK14995 methyl viologen resistance protein SmvA; Provisional	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR00881 2A0104 phosphoglycerate transporter family protein	Back alignment and domain information

>PRK12382 putative transporter; Provisional	Back alignment and domain information

>TIGR00897 2A0118 polyol permease family	Back alignment and domain information

>TIGR00882 2A0105 oligosaccharide:H+ symporter	Back alignment and domain information

>PRK11646 multidrug resistance protein MdtH; Provisional	Back alignment and domain information

>PRK03893 putative sialic acid transporter; Provisional	Back alignment and domain information

>PRK09705 cynX putative cyanate transporter; Provisional	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>PRK12307 putative sialic acid transporter; Provisional	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK09556 uhpT sugar phosphate antiporter; Reviewed	Back alignment and domain information

>TIGR00896 CynX cyanate transporter	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>TIGR00903 2A0129 major facilitator 4 family protein	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>TIGR00879 SP MFS transporter, sugar porter (SP) family	Back alignment and domain information

>PRK05122 major facilitator superfamily transporter; Provisional	Back alignment and domain information

>PTZ00207 hypothetical protein; Provisional	Back alignment and domain information

>PLN00028 nitrate transmembrane transporter; Provisional	Back alignment and domain information

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK03633 putative MFS family transporter protein; Provisional	Back alignment and domain information

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK10077 xylE D-xylose transporter XylE; Provisional	Back alignment and domain information

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins	Back alignment and domain information

>PRK15034 nitrate/nitrite transport protein NarU; Provisional	Back alignment and domain information

>PRK11010 ampG muropeptide transporter; Validated	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00899 2A0120 sugar efflux transporter	Back alignment and domain information

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter	Back alignment and domain information

>PRK10642 proline/glycine betaine transporter; Provisional	Back alignment and domain information

>PRK15011 sugar efflux transporter B; Provisional	Back alignment and domain information

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional	Back alignment and domain information

>TIGR00902 2A0127 phenyl proprionate permease family protein	Back alignment and domain information

>PRK09952 shikimate transporter; Provisional	Back alignment and domain information

>TIGR00885 fucP L-fucose:H+ symporter permease	Back alignment and domain information

>TIGR00898 2A0119 cation transport protein	Back alignment and domain information

>TIGR00887 2A0109 phosphate:H+ symporter	Back alignment and domain information

>PRK10406 alpha-ketoglutarate transporter; Provisional	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00805 oat sodium-independent organic anion transporter	Back alignment and domain information

>TIGR00901 2A0125 AmpG-related permease	Back alignment and domain information

>TIGR00883 2A0106 metabolite-proton symporter	Back alignment and domain information

>PRK11902 ampG muropeptide transporter; Reviewed	Back alignment and domain information

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family	Back alignment and domain information

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00889 2A0110 nucleoside transporter	Back alignment and domain information

>PRK15075 citrate-proton symporter; Provisional	Back alignment and domain information

>PRK10133 L-fucose transporter; Provisional	Back alignment and domain information

>TIGR00880 2_A_01_02 Multidrug resistance protein	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>TIGR00806 rfc RFC reduced folate carrier	Back alignment and domain information

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter	Back alignment and domain information

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)	Back alignment and domain information

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []	Back alignment and domain information

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

>TIGR00788 fbt folate/biopterin transporter	Back alignment and domain information

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PF03825 Nuc_H_symport: Nucleoside H+ symporter	Back alignment and domain information

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>TIGR01272 gluP glucose/galactose transporter	Back alignment and domain information

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09669 putative symporter YagG; Provisional	Back alignment and domain information

>PRK09848 glucuronide transporter; Provisional	Back alignment and domain information

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)	Back alignment and domain information

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions	Back alignment and domain information

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]	Back alignment and domain information

>PRK10429 melibiose:sodium symporter; Provisional	Back alignment and domain information

>PF13347 MFS_2: MFS/sugar transport protein	Back alignment and domain information

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)	Back alignment and domain information

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters	Back alignment and domain information

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]	Back alignment and domain information

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]	Back alignment and domain information

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon	Back alignment and domain information

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters	Back alignment and domain information

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PRK03612 spermidine synthase; Provisional	Back alignment and domain information

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PRK11462 putative transporter; Provisional	Back alignment and domain information

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]	Back alignment and domain information

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins	Back alignment and domain information

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]	Back alignment and domain information

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans	Back alignment and domain information

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		594
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 47.9 bits (113), Expect = 8e-06
 Identities = 88/572 (15%), Positives = 161/572 (28%), Gaps = 197/572 (34%)

Query: 87  ALQNFIG------YGWVW--LIVTGRAPVLPLWAMCILIFVGNNGETYFNT-AALVSCVQ 137
            +Q F+       Y ++   +    R P +                 Y      L +  Q
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-------------RMYIEQRDRLYNDNQ 124

Query: 138 NFPK---SRGPVVGILK---------------GFAGLGGAILT----QVYTMIHAPDHAN 175
            F K   SR      L+               G  G G   +       Y +    D   
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--F 182

Query: 176 LIFMVAVG----PAMVVIALMFIIRPVGGHRQVRPSDSSSFTF-IYSVCLLLAAYLMGVM 230
            IF + +     P  V+  L  ++  +  +   R   SS+    I+S+   L   L    
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 231 LVEDLVDL----NHTVIIIFTV---ILF------VLLFIP--IVIPIILSFFLERTDPAE 275
               L+ L    N      F +   IL       V  F+       I L        P E
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 276 -EALLSKPENMEPGKSNQETDEV------ILSEVEDEKP-------------------KD 309
            ++LL K  +  P    +E          I++E   +                       
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 310 VDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFW----- 364
           +++L  +E RK   +L   +F               P       +   L+    W     
Sbjct: 363 LNVLEPAEYRKMFDRLS--VF---------------P---PSAHIPTILLSL-IWFDVIK 401

Query: 365 ---------LIFFSLLLGSGSGLTV------------IDNLGQMSQSL--------GYDN 395
                    L  +SL+       T+            ++N   + +S+         +D+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461

Query: 396 THIFVSMIS--IWNFLGRVGGGY-------------FSEIIVRDYAYPRPVAMAVAQFVM 440
             +    +    ++ +     G+             F  + + D+           +F+ 
Sbjct: 462 DDLIPPYLDQYFYSHI-----GHHLKNIEHPERMTLFRMVFL-DF-----------RFLE 504

Query: 441 A-IGHIFLGMGWPGAMYVGTLLIGLG-YGAHWAIVPAAASELFGLKKFGALYNFL----- 493
             I H      W  +  +   L  L  Y  +  I     ++    +   A+ +FL     
Sbjct: 505 QKIRHD--STAWNASGSILNTLQQLKFYKPY--ICD---NDPKYERLVNAILDFLPKIEE 557

Query: 494 -TLANPAGSLVFSGLIA--SYIYDHEAEKQHQ 522
             + +    L+   L+A    I++ EA KQ Q
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFE-EAHKQVQ 588

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		594
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	99.88
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	99.88
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	99.69
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	99.68
2cfq_A		417	Lactose permease; transport, transport mechanism,	99.65
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	99.5
2xut_A		524	Proton/peptide symporter family protein; transport	99.48
4aps_A		491	DI-OR tripeptide H+ symporter; transport protein,	98.96
1pw4_A		451	Glycerol-3-phosphate transporter; transmembrane, i	98.8
2gfp_A		375	EMRD, multidrug resistance protein D; membrane pro	98.78
3o7q_A		438	L-fucose-proton symporter; transporter, multi-PASS	98.72
2xut_A		524	Proton/peptide symporter family protein; transport	98.62
2cfq_A		417	Lactose permease; transport, transport mechanism,	98.09
4gc0_A		491	D-xylose-proton symporter; MFS, transport protein;	97.91

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

Probab=99.88  E-value=1.1e-21  Score=208.71  Aligned_cols=368  Identities=12%  Similarity=0.098  Sum_probs=242.9

Q ss_pred             chhHHHHHHHHHHHHhcCcc-cccccccHHHHhhhCCChhhHHHHHHHHhhhhh-cccchhhhhchhhhHHHHHHHHHHH
Q 007654           13 NNRWLVFVAAMWIQSCAGIG-YLFGSISPVIKSSLNYNQKQIARLGVAKDLGDS-VGFLAGSLCEVLPIWGALLVGALQN   90 (594)
Q Consensus        13 ~~Rw~~l~a~~~i~l~~Gt~-Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~~G~~-~gi~~G~l~D~~gp~~~l~iG~~~~   90 (594)
                      +++|..++.........|.. +.++.+-|.+++++|+|.+|+.++.....++.. ..++.|.+.||+|+|.++.+|.+..
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            44555555555555555443 688888999999999999999998777777764 5889999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHhhccccchhhhhHHHHHHHhcC-CCCCceehhhHhhhhhhHHHHHHHHHHhc
Q 007654           91 FIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIH  169 (594)
Q Consensus        91 ~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP-~~RG~~~Gl~~a~~GLSa~i~s~i~~~~f  169 (594)
                      .++..+.+...  ..  +++|.+.+.-++.|.|.+..+++......+++| ++||.+.|+.-...++|..+-..+...+.
T Consensus       102 ~~~~~~~~~~~--~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          102 ALGAALFWPAA--EI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHH--HT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHhcc--cc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888765432  12  257877777788888999999999999999998 56899999999999999877765554332


Q ss_pred             -CCCh------------HHHHHHHHHHHHHHHHhhheeecccCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhcc
Q 007654          170 -APDH------------ANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLV  236 (594)
Q Consensus       170 -~~~~------------~~fll~la~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~  236 (594)
                       +...            +.+--.-   .                      .+.......+.+.        +        
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~---~----------------------~~~~~w~~~~~~~--------~--------  216 (438)
T 3o7q_A          178 LSNVPHQSQDVLDKMSPEQLSAYK---H----------------------SLVLSVQTPYMII--------V--------  216 (438)
T ss_dssp             HTSSCCCCHHHHHHSCHHHHHHHH---H----------------------HHHHHHHHHHHHH--------H--------
T ss_pred             hcccccccccccccCCcchhhhhh---h----------------------hhhhhHHHHHHHH--------H--------
Confidence             1100            0000000   0                      0000011111000        0        


Q ss_pred             ccchhHHHHHHHHHHHHhhhcchhhhhhcccccCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchh
Q 007654          237 DLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPAS  316 (594)
Q Consensus       237 ~~s~~~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (594)
                              ....+..++..          +.. .++.           +++.+             ++++.         
T Consensus       217 --------~~~~~~~~~~~----------~~~-~p~~-----------~~~~~-------------~~~~~---------  244 (438)
T 3o7q_A          217 --------AIVLLVALLIM----------LTK-FPAL-----------QSDNH-------------SDAKQ---------  244 (438)
T ss_dssp             --------HHHHHHHHHHH----------HCC-CCCC-----------TTTCC-------------CCSST---------
T ss_pred             --------HHHHHHHHHHH----------HHc-CCcc-----------ccccc-------------ccccc---------
Confidence                    00000000000          000 0000           00000             00000         


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhccCCCCCCCCCCHHHHhhcHHHHHHHHHHHhhhcchhheecchHHH-HHHh-CCC
Q 007654          317 ERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYD  394 (594)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i-~~~~-g~~  394 (594)
                                                   +  ....++++.+|++++|.+.+..++..+....+.+...+. .++. |.+
T Consensus       245 -----------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  293 (438)
T 3o7q_A          245 -----------------------------G--SFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT  293 (438)
T ss_dssp             -----------------------------T--SHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             -----------------------------c--chhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc
Confidence                                         0  001234678899999999999998888777777888888 7775 887


Q ss_pred             cch--hHHHHHHHhhhhhcccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHhhhhhccch
Q 007654          395 NTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI  472 (594)
Q Consensus       395 ~~~--~~Vsl~si~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~l  472 (594)
                      ...  ...++..+.+.+||++.|+++||++||+.      +....++..++.+++...+.....+...++|++++..+..
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  367 (438)
T 3o7q_A          294 AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV------LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPT  367 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            653  37788899999999999999999987532      2333444455544444444334455668889999999999


Q ss_pred             hHHHHHHhhccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHHhhh
Q 007654          473 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA  517 (594)
Q Consensus       473 ~p~i~s~~FG~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd~~~  517 (594)
                      ...++.|.++.+ -++.-++...+ .+|.. ++|.+.|.++|+.+
T Consensus       368 ~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~-~~~~~~g~l~~~~g  409 (438)
T 3o7q_A          368 IFSLGIKNLGQD-TKYGSSFIVMT-IIGGG-IVTPVMGFVSDAAG  409 (438)
T ss_dssp             HHHHHHSSCGGG-HHHHHHHHHHT-THHHH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcccc-ccchhhHHHHH-HHHHH-HHHHHHHHHHHHhc
Confidence            999999999855 66666666644 46766 58999999999886

PyMOL of 3o7q

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}	Back alignment and structure

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1	Back alignment and structure

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}	Back alignment and structure

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*	Back alignment and structure

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}	Back alignment and structure

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*	Back alignment and structure

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		594
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	99.91
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	99.73
d1pw4a_		447	Glycerol-3-phosphate transporter {Escherichia coli	98.9
d1pv7a_		417	Lactose permease {Escherichia coli [TaxId: 562]}	98.33

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.8e-24  Score=225.20  Aligned_cols=417  Identities=15%  Similarity=0.159  Sum_probs=261.8

Q ss_pred             hcchhHHHHHHHHHHHHhcC-cccccccccHHHHhhhCCChhhHHHHHHHHhhhhhc-ccchhhhhchhhhHHHHHHHHH
Q 007654           11 FFNNRWLVFVAAMWIQSCAG-IGYLFGSISPVIKSSLNYNQKQIARLGVAKDLGDSV-GFLAGSLCEVLPIWGALLVGAL   88 (594)
Q Consensus        11 ~~~~Rw~~l~a~~~i~l~~G-t~Y~fS~ys~~Lk~~lg~sq~~l~~i~~a~~~G~~~-gi~~G~l~D~~gp~~~l~iG~~   88 (594)
                      ..+.||.+++...+...... ....+++..|.++ ++|+|.+|+.++..+..++..+ .++.|.+.||+|+|.++.+|.+
T Consensus        19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            34457887776655444433 3356787778776 5899999999987777777654 7899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCChhHHHHHHHHHhhccccchhhhhHHHHHHHhcCC-CCCceehhhHhhhhhhHHHHHHHHHH
Q 007654           89 QNFIGYGWVWLIVTGRAPVLPLWAMCILIFVGNNGETYFNTAALVSCVQNFPK-SRGPVVGILKGFAGLGGAILTQVYTM  167 (594)
Q Consensus        89 ~~~~Gy~~~~l~~~g~i~~~s~~~l~~~~~l~g~G~~~~~taal~t~~k~FP~-~RG~~~Gl~~a~~GLSa~i~s~i~~~  167 (594)
                      +..++..+...+..-.   .+++.+.+..++.|.+.+..+.++.....++||+ +||++.|+.-.+.++++.+-..+...
T Consensus        98 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~  174 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL  174 (447)
T ss_dssp             HHHHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHhhccccchhh---hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence            8877777654322110   1355666677777888888888999999999985 59999999988888887665433321


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHhhheeecccCCCCcCCCCCCCchhHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH
Q 007654          168 IHAPDHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFT  247 (594)
Q Consensus       168 ~f~~~~~~fll~la~~~~~v~l~~~~~ir~~~~~~~~~~~~~~~f~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~~~~~  247 (594)
                      ..                      .    .....       +..|....                            ...
T Consensus       175 ~~----------------------~----~~~~w-------~~~~~~~~----------------------------~~~  193 (447)
T d1pw4a_         175 GM----------------------A----WFNDW-------HAALYMPA----------------------------FCA  193 (447)
T ss_dssp             HH----------------------H----HTCCS-------TTCTHHHH----------------------------HHH
T ss_pred             Hh----------------------h----hhhcc-------cccchhhh----------------------------hhH
Confidence            10                      0    00000       00111100                            000


Q ss_pred             HHHHHHhhhcchhhhhhcccccCCChhhhhhcCCCCCCCCCCCCCcchhhhhcccccCCCCccCCCchhHHHHHHHHHHH
Q 007654          248 VILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQA  327 (594)
Q Consensus       248 ~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (594)
                      .+..++.+.         +.++++++  ..   .+..++.               +++.+++.+     ++.        
T Consensus       194 ~~~~~~~~~---------~~~~~~~~--~~---~~~~~~~---------------~~~~~~~~~-----~~~--------  231 (447)
T d1pw4a_         194 ILVALFAFA---------MMRDTPQS--CG---LPPIEEY---------------KNDYPDDYN-----EKA--------  231 (447)
T ss_dssp             HHHHHHHHH---------HCCCSSTT--TC---CCSCTTT---------------CCC----------------------
T ss_pred             HHHHHHHHH---------hcccchhh--cc---cchhhhh---------------hhhcccchh-----hcc--------
Confidence            001000000         11111110  00   0000000               000000000     000        


Q ss_pred             HHHhhhhhhhhhhhccCCCCCCCCCCHHHHhhcHHHHHHHHHHHhhhcchhheecchHHHHHH-hCCCcc--hhHHHHHH
Q 007654          328 RLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMIS  404 (594)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~p~~~~d~t~~e~l~t~~Fwll~~~~~~~~g~Gl~vi~n~~~i~~~-~g~~~~--~~~Vsl~s  404 (594)
                                   ++   .....+...++.++++.+|.+....++.......+........++ .+.+..  ....++..
T Consensus       232 -------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (447)
T d1pw4a_         232 -------------EQ---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYE  295 (447)
T ss_dssp             --------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHH
T ss_pred             -------------cc---ccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcch
Confidence                         00   000123345678899999999998888776666666555555544 456554  34788999


Q ss_pred             HhhhhhcccccchhhhhhhccCCchhHHHHHHHHHHHHHHHHHhc---cCchhHHHHHHHHHhhhhhccchhHHHHHHhh
Q 007654          405 IWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF  481 (594)
Q Consensus       405 i~n~~GRl~~G~lsD~l~r~~~~~r~~~l~~~~~~~~~~~ll~~~---~~~~~l~~~~~liG~~~G~~~~l~p~i~s~~F  481 (594)
                      +.+.+|++++|+++||++|++...   .......+..++.+++..   .......+..+++|++.++........+.|.+
T Consensus       296 ~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  372 (447)
T d1pw4a_         296 YAGIPGTLLCGWMSDKVFRGNRGA---TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA  372 (447)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTCHHH---HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred             hhhhhhhhhhhhhhhhcccccccc---ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999998754321   112222222222222221   22345666777889999999999999999999


Q ss_pred             ccCchhhhhhHHHhhhhHHHHHHHHHHHHHHHHhhhhcccCcccccccccccccCCCCCCCCCccccCcccHHHHHHHHH
Q 007654          482 GLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSG  561 (594)
Q Consensus       482 G~k~~g~nyg~~~~a~~~g~~~~~~~l~G~iyd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~  561 (594)
                      ..++.|+..|+......+++.+.+|.+.|.+.|+.|                                  ++..|.+..+
T Consensus       373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g----------------------------------~~~~~~~~~~  418 (447)
T d1pw4a_         373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG----------------------------------WDGGFMVMIG  418 (447)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC----------------------------------SHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------------------hHHHHHHHHH
Confidence            999999999998765555444468999999999775                                  7889999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcc
Q 007654          562 LCIVAVILSMILVHRTTNVYSHLYGK  587 (594)
Q Consensus       562 ~~~~a~~ls~~l~~r~r~~~~~~~~~  587 (594)
                      ++++++++.+++..+++|..+++.++
T Consensus       419 ~~~~~~~~~~~~~~~~~~r~~~~~~e  444 (447)
T d1pw4a_         419 GSILAVILLIVVMIGEKRRHEQLLQE  444 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHh
Confidence            99999888888777776666655544

PyMOL of d1pw4a_

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure