Citrus Sinensis ID: 007669

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEENADEDIDMPALEEDGAEESKMEEVD
cccccccccccccccccccccccEEEccEEEEEEcccccccEEEEEcccccEEEEEccccccccccEEEEEEEcccHHHHHcHHHHHHHHHHccccccccEEEEEEEEEcccccccccccccccccccccccHHHHHHHccccccEEEEEEEEEEEcccccccccccccccHHHHHHHHHHccccccccccEEEEEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEcccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccHHHHHHccccccccEEEEEcccHHHHHccHHHHHHHHcccEEEEccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccEEEEEccccccHHHHHHHHHccccccccccccccccEEEEccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccc
HHHHHccccHHHHHHHccHHHHHHHcEEEEEEEEEccccccEEEEEccccEEEEEEcccccccccEEEEEEEEccccHHHHcHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHccccccccccccccccHHHccccEEEEEEEcHHHHcccccEEcccHHHccHHHHHHHHHHHHccHHHccEEEEEEEcccEEEEEEEEccccccccccccccccccEEEEEEEEEEEccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccHcccHHHHHHHcccccccEEEEEcccHHHHHccHHHHHHHHcccEEEEEEccHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEccccccHHHHHHHHHHHHHcccHHHHHHHcccEEEccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
mealqagadvsmigqfGVGFYSAYLVAERVVVTTkhnddeqyiwesqaggsftvtrdvsgeplgrgtkMTLYLKEDQLEYLEERRIKDLVKKHSEfisypiylwtekttekeisddeddepkkeeegdvedvdEEKEKEGKKKKKIKEVSHEWQLInkqkpiwlrkpeeitKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFkavlfvpkrapfdlfdtrkkMNNIKLYVRRVFIMDNCEELIPEYLGFIkgvvdsddlplnISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYhstksseefTSLKDYVTRMKEGQKDIYYITGeskkavenspflerlkkkGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATkeglklddeTEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSdrivdspcclvtgeygwsANMERIMKAQALRDnsmssymsskktmeinpdngiMEELRKRAeadkndksVKDLTMLLFETALLtsgfslddpntfgSRIHRMLKLGlsideeenadedidmpaleedgaeeskmeevd
mealqagadvsmigqFGVGFYSAYLVAERVVVTTKhnddeqyiwesqaggsftvtrdvsgeplgrgtkmtlyLKEDQLEYLEERRIKDLvkkhsefisypiylwtekttekeisddeddepkkeeegdvedvdeekekegkkkkkikevshewqlinkqkpiwlrkpeEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPkrapfdlfdtrkkmnnIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLryhstksseeftslkdyvtRMKEGQKDIYYItgeskkavenspfleRLKKKGYEVLYMVDAIDEYAVGQLKeyegkklvsatkeglklddeteeekkkkeekkksfENLCKTMKDILGDRVEKVvvsdrivdspcclvtgeygwsanMERIMKAQALRDNSMSSYMSSKktmeinpdngIMEELRKRaeadkndksVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLsideeenadedidmpaleedgaeeskmeevd
MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTekttekeisddeddepkkeeegdvedvdeekekegkkkkkikeVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATkeglklddeteeekkkkeekkkSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNsmssymsskkTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSideeenadedidMPALEEDGAEESKMEEVD
********DVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTE**********************************************WQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHE*******LADLLRY***********LKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEG**********************************CKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERI***********************************************DLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGL*******************************
******GADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTT****************************************SHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATK************************NLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIM******************TMEINPDNGIMEELRKRAE**KNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLS******************************
MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTT**************************************EVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLK*****************SFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEENADEDIDMPALEE************
*******ADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTE**************************E****KKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSI*****************************
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MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDVEDVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLxxxxxxxxxxxxxxxxxxxxxCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSIDEEENADEDIDMPALEEDGAEESKMEEVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query594 2.2.26 [Sep-21-2011]
P51819703 Heat shock protein 83 OS= N/A no 0.998 0.843 0.936 0.0
P27323700 Heat shock protein 90-1 O yes no 1.0 0.848 0.885 0.0
Q08277715 Heat shock protein 82 OS= N/A no 1.0 0.830 0.853 0.0
Q07078699 Heat shock protein 81-3 O yes no 0.996 0.846 0.845 0.0
Q69QQ6699 Heat shock protein 81-2 O yes no 0.996 0.846 0.845 0.0
P36181699 Heat shock cognate protei N/A no 0.996 0.846 0.854 0.0
Q0J4P2699 Heat shock protein 81-1 O yes no 0.996 0.846 0.845 0.0
A2YWQ1699 Heat shock protein 81-1 O N/A no 0.996 0.846 0.845 0.0
O03986699 Heat shock protein 90-4 O no no 0.998 0.848 0.838 0.0
P55737699 Heat shock protein 90-2 O no no 0.998 0.848 0.845 0.0
>sp|P51819|HSP83_IPONI Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1 Back     alignment and function desciption
 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 556/594 (93%), Positives = 581/594 (97%), Gaps = 1/594 (0%)

Query: 1   MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSG 60
           MEALQAGADVSMIGQFGVGFYSAYLVAE+V+VTTKHNDDEQYIWESQAGGSFTVTRDV G
Sbjct: 111 MEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVDG 170

Query: 61  EPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE 120
           E LGRGTK+TL+LKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE
Sbjct: 171 EQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE 230

Query: 121 PKKEEEGDVEDVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYK 180
           PKKEEEGD+E+VDE+KEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYK
Sbjct: 231 PKKEEEGDIEEVDEDKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYK 290

Query: 181 SLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNC 240
           SLTNDWEDHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNC
Sbjct: 291 SLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNC 350

Query: 241 EELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDY 300
           EELIPEYLGF+KGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENK+DY
Sbjct: 351 EELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKDDY 410

Query: 301 NKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYI 360
           NKFY+AFSKNLKLGIHEDSQNRAKLADLLRY+STKS +E TSLKDYVTRMKEGQKDIYYI
Sbjct: 411 NKFYEAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGDELTSLKDYVTRMKEGQKDIYYI 470

Query: 361 TGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDE 420
           TGESKKAVENSPFLERLKKKGYEVL+MVDAIDEYAVGQLKEY+GKKLVSATKEGLKL+D+
Sbjct: 471 TGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLEDD 530

Query: 421 TEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERI 480
            EEEKKK+EEKKKSFENLCK +KDILGD+VEKVVVSDRIVDSPCCLVTGEYGW+ANMERI
Sbjct: 531 DEEEKKKREEKKKSFENLCKIIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERI 590

Query: 481 MKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLT 540
           MKAQALRD+SMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDL +LLFETALLT
Sbjct: 591 MKAQALRDSSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLT 650

Query: 541 SGFSLDDPNTFGSRIHRMLKLGLSIDEEENADEDIDMPALEEDGAEESKMEEVD 594
           SGFSLDDPNTFG+RIHRMLKLGLSIDEEE  D D DMPALEE+  EESKMEEVD
Sbjct: 651 SGFSLDDPNTFGARIHRMLKLGLSIDEEEAGD-DADMPALEEEAGEESKMEEVD 703
Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved for instance in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function.
Ipomoea nil (taxid: 35883)
>sp|P27323|HS901_ARATH Heat shock protein 90-1 OS=Arabidopsis thaliana GN=HSP90-1 PE=1 SV=3 Back     alignment and function description
>sp|Q08277|HSP82_MAIZE Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1 Back     alignment and function description
>sp|Q07078|HSP83_ORYSJ Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2 Back     alignment and function description
>sp|Q69QQ6|HSP82_ORYSJ Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1 Back     alignment and function description
>sp|P36181|HSP80_SOLLC Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1 Back     alignment and function description
>sp|Q0J4P2|HSP81_ORYSJ Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2 Back     alignment and function description
>sp|A2YWQ1|HSP81_ORYSI Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1 Back     alignment and function description
>sp|O03986|HS904_ARATH Heat shock protein 90-4 OS=Arabidopsis thaliana GN=HSP90-4 PE=2 SV=1 Back     alignment and function description
>sp|P55737|HS902_ARATH Heat shock protein 90-2 OS=Arabidopsis thaliana GN=HSP90-2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
356530818 699 PREDICTED: heat shock protein 83-like [G 1.0 0.849 0.937 0.0
449445987 703 PREDICTED: heat shock protein 83-like [C 0.998 0.843 0.932 0.0
356559744 699 PREDICTED: heat shock protein 83-like [G 1.0 0.849 0.934 0.0
224134805 703 predicted protein [Populus trichocarpa] 0.998 0.843 0.944 0.0
312283005 705 unnamed protein product [Thellungiella h 1.0 0.842 0.919 0.0
224077478 703 predicted protein [Populus trichocarpa] 0.998 0.843 0.939 0.0
33326375 698 heat shock protein [Hevea brasiliensis] 0.998 0.849 0.937 0.0
1708314 703 RecName: Full=Heat shock protein 83 gi|1 0.998 0.843 0.936 0.0
225464589 704 PREDICTED: heat shock protein 83-like [V 0.998 0.842 0.922 0.0
147789390 704 hypothetical protein VITISV_007727 [Viti 0.998 0.842 0.922 0.0
>gi|356530818|ref|XP_003533977.1| PREDICTED: heat shock protein 83-like [Glycine max] Back     alignment and taxonomy information
 Score = 1073 bits (2776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/594 (93%), Positives = 580/594 (97%)

Query: 1   MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSG 60
           MEALQAGADVSMIGQFGVGFYSAYLVAE+V+VTTKHNDDEQYIWESQAGGSFTVTRD  G
Sbjct: 106 MEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDTDG 165

Query: 61  EPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE 120
           E LGRGTK+TL+LKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE
Sbjct: 166 EQLGRGTKITLFLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE 225

Query: 121 PKKEEEGDVEDVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYK 180
           PKKEEEGD+EDVDEEKEK+ KKKKKIKEVSHEWQLINKQKPIWLRKPEEITK+EYASFYK
Sbjct: 226 PKKEEEGDIEDVDEEKEKDSKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKDEYASFYK 285

Query: 181 SLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNC 240
           SLTNDWE+HLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNC
Sbjct: 286 SLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNC 345

Query: 241 EELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDY 300
           EELIPEYLGF+KGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDY
Sbjct: 346 EELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDY 405

Query: 301 NKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYI 360
           NKFYDAFSKNLKLGIHEDSQNR+KLADLLRYHSTKS +E TSLKDYVTRMKEGQKDIYYI
Sbjct: 406 NKFYDAFSKNLKLGIHEDSQNRSKLADLLRYHSTKSGDEMTSLKDYVTRMKEGQKDIYYI 465

Query: 361 TGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDE 420
           TGESKKAVENSPFLERLKKKGYEVL+MVDAIDEYAVGQLKEY+GKKLVSATKEGLKLDDE
Sbjct: 466 TGESKKAVENSPFLERLKKKGYEVLFMVDAIDEYAVGQLKEYDGKKLVSATKEGLKLDDE 525

Query: 421 TEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERI 480
           TEEEKKKKEEKKKSF+ LCK +KDILGD+VEKVVVSDRIVDSPCCLVTGEYGWSANMERI
Sbjct: 526 TEEEKKKKEEKKKSFDELCKVIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWSANMERI 585

Query: 481 MKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLT 540
           MKAQALRD+SMS YMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDL +LLFETALLT
Sbjct: 586 MKAQALRDSSMSGYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLVLLLFETALLT 645

Query: 541 SGFSLDDPNTFGSRIHRMLKLGLSIDEEENADEDIDMPALEEDGAEESKMEEVD 594
           SGFSLDDPNTF SRIHRMLKLGLSIDE++N  +D+DMP LEEDGAEESKMEEVD
Sbjct: 646 SGFSLDDPNTFASRIHRMLKLGLSIDEDDNGGDDVDMPPLEEDGAEESKMEEVD 699

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449445987|ref|XP_004140753.1| PREDICTED: heat shock protein 83-like [Cucumis sativus] gi|449485495|ref|XP_004157188.1| PREDICTED: heat shock protein 83-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559744|ref|XP_003548157.1| PREDICTED: heat shock protein 83-like [Glycine max] Back     alignment and taxonomy information
>gi|224134805|ref|XP_002327494.1| predicted protein [Populus trichocarpa] gi|222836048|gb|EEE74469.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|312283005|dbj|BAJ34368.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|224077478|ref|XP_002305263.1| predicted protein [Populus trichocarpa] gi|222848227|gb|EEE85774.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|33326375|gb|AAQ08597.1| heat shock protein [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|1708314|sp|P51819.1|HSP83_IPONI RecName: Full=Heat shock protein 83 gi|169296|gb|AAA33748.1| heat shock protein 83 [Ipomoea nil] gi|445625|prf||1909372A heat shock protein 83 Back     alignment and taxonomy information
>gi|225464589|ref|XP_002274022.1| PREDICTED: heat shock protein 83-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789390|emb|CAN73318.1| hypothetical protein VITISV_007727 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
TAIR|locus:2161790699 HSP81-3 "heat shock protein 81 0.749 0.636 0.780 1e-237
TAIR|locus:2161775699 Hsp81.4 "HEAT SHOCK PROTEIN 81 0.749 0.636 0.776 1.6e-237
UNIPROTKB|Q76LV2733 HSP90AA1 "Heat shock protein H 0.735 0.596 0.662 3.6e-198
UNIPROTKB|F1PGY1630 HSP90AA1 "Uncharacterized prot 0.735 0.693 0.662 3.6e-198
UNIPROTKB|P07900732 HSP90AA1 "Heat shock protein H 0.735 0.596 0.662 3.6e-198
UNIPROTKB|O02705733 HSP90AA1 "Heat shock protein H 0.735 0.596 0.662 3.6e-198
UNIPROTKB|Q9GKX7733 HSP90AA1 "Heat shock protein H 0.735 0.596 0.662 3.6e-198
MGI|MGI:96250733 Hsp90aa1 "heat shock protein 9 0.735 0.596 0.658 3.2e-197
RGD|631409733 Hsp90aa1 "heat shock protein 9 0.735 0.596 0.658 3.2e-197
UNIPROTKB|P11501728 HSP90AA1 "Heat shock protein H 0.735 0.600 0.658 6.7e-197
TAIR|locus:2161790 HSP81-3 "heat shock protein 81-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1820 (645.7 bits), Expect = 1.0e-237, Sum P(2) = 1.0e-237
 Identities = 349/447 (78%), Positives = 384/447 (85%)

Query:   149 VSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLF 208
             VSHEW L+NKQKPIW+RKPEEI KEEYA+FYKSL+NDWE+HLAVKHFSVEGQLEFKA+LF
Sbjct:   254 VSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILF 313

Query:   209 VPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREM 268
             VPKRAPFDLFDT+KK NNIKLYVRRVFIMDNCE++IPEYLGF+KG+VDS+DLPLNISRE 
Sbjct:   314 VPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEDIIPEYLGFVKGIVDSEDLPLNISRET 373

Query:   269 LQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADL 328
             LQQNKILKVIRKNLVKKC+E+F EIAENKEDYNKFY+AFSKNLKLGIHEDSQNR K+A+L
Sbjct:   374 LQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRTKIAEL 433

Query:   329 LRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMV 388
             LRYHSTKS +E TSLKDYVTRMKEGQ DI+YITGESKKAVENSPFLE+LKKKG EVLYMV
Sbjct:   434 LRYHSTKSGDELTSLKDYVTRMKEGQNDIFYITGESKKAVENSPFLEKLKKKGIEVLYMV 493

Query:   389 DAIDEYAVGQLKEYEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXSFENLCKTMKDILGD 448
             DAIDEYA+GQLKE+EGKKLVSAT                       FE LCK +KD+LGD
Sbjct:   494 DAIDEYAIGQLKEFEGKKLVSATKEGLKLDETEDEKKKKEELKE-KFEGLCKVIKDVLGD 552

Query:   449 RVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDNXXXXXXXXXXTMEINPDNG 508
             +VEKV+VSDR+VDSPCCLVTGEYGW+ANMERIMKAQALRD+          TMEINP+N 
Sbjct:   553 KVEKVIVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGGYMSSKKTMEINPENS 612

Query:   509 IMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLSXXXX 568
             IM+ELRKRA+ADKNDKSVKDL +LLFETALLTSGFSLD+PNTFGSRIHRMLKLGLS    
Sbjct:   613 IMDELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGSRIHRMLKLGLSIDDD 672

Query:   569 XXXXXXXXMPALEEDG-AEESKMEEVD 594
                     MP LE+D  AE SKMEEVD
Sbjct:   673 DVVEADADMPPLEDDADAEGSKMEEVD 699
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0005730 "nucleolus" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=TAS
GO:0009408 "response to heat" evidence=IEP;IMP
GO:0071277 "cellular response to calcium ion" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2161775 Hsp81.4 "HEAT SHOCK PROTEIN 81.4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q76LV2 HSP90AA1 "Heat shock protein HSP 90-alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PGY1 HSP90AA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P07900 HSP90AA1 "Heat shock protein HSP 90-alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O02705 HSP90AA1 "Heat shock protein HSP 90-alpha" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GKX7 HSP90AA1 "Heat shock protein HSP 90-alpha" [Equus caballus (taxid:9796)] Back     alignment and assigned GO terms
MGI|MGI:96250 Hsp90aa1 "heat shock protein 90, alpha (cytosolic), class A member 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|631409 Hsp90aa1 "heat shock protein 90, alpha (cytosolic), class A member 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P11501 HSP90AA1 "Heat shock protein HSP 90-alpha" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P24724HSP90_THEPANo assigned EC number0.66990.99660.8210yesno
Q4R4T5HS90B_MACFANo assigned EC number0.67420.99490.8162N/Ano
P46598HSP90_CANALNo assigned EC number0.64450.99660.8373N/Ano
P02829HSP82_YEASTNo assigned EC number0.62430.98310.8236yesno
Q08277HSP82_MAIZENo assigned EC number0.85331.00.8307N/Ano
P41887HSP90_SCHPONo assigned EC number0.6650.99830.8423yesno
P55737HS902_ARATHNo assigned EC number0.84530.99830.8483nono
P07900HS90A_HUMANNo assigned EC number0.67740.99490.8073yesno
P07901HS90A_MOUSENo assigned EC number0.67960.99490.8062yesno
P36182HSP82_TOBACNo assigned EC number0.9380.84001.0N/Ano
P36181HSP80_SOLLCNo assigned EC number0.85400.99660.8469N/Ano
Q7PT10HSP83_ANOGANo assigned EC number0.69440.95450.7875yesno
Q69QQ6HSP82_ORYSJNo assigned EC number0.84530.99660.8469yesno
O02705HS90A_PIGNo assigned EC number0.67470.99490.8062yesno
Q25293HSP83_LEIINNo assigned EC number0.63970.94940.8045yesno
O44001HSP90_EIMTENo assigned EC number0.70.99660.8302N/Ano
Q61W58HSP90_CAEBRNo assigned EC number0.66380.98650.8300N/Ano
Q4UDU8HSP90_THEANNo assigned EC number0.66390.99660.8199yesno
Q9GKX7HS90A_HORSENo assigned EC number0.68120.99490.8062yesno
Q0J4P2HSP81_ORYSJNo assigned EC number0.84530.99660.8469yesno
P27323HS901_ARATHNo assigned EC number0.88571.00.8485yesno
P46633HS90A_CRIGRNo assigned EC number0.66990.99490.8062yesno
Q07078HSP83_ORYSJNo assigned EC number0.84530.99660.8469yesno
P82995HS90A_RATNo assigned EC number0.67960.99490.8062yesno
Q90474H90A1_DANRENo assigned EC number0.66440.99320.8137yesno
P02828HSP83_DROMENo assigned EC number0.65470.99490.8242yesno
P54651HSC90_DICDINo assigned EC number0.67820.98310.8342yesno
P51819HSP83_IPONINo assigned EC number0.93600.99830.8435N/Ano
P51818HS903_ARATHNo assigned EC number0.84360.99830.8483nono
O02192HSP83_DROAVNo assigned EC number0.65740.99490.8254N/Ano
P15108HSC82_YEASTNo assigned EC number0.63680.99660.8397yesno
Q76LV2HS90A_BOVINNo assigned EC number0.68120.99490.8062yesno
O03986HS904_ARATHNo assigned EC number0.83860.99830.8483nono
O61998HSP90_BRUPANo assigned EC number0.65900.99320.8228N/Ano
A2YWQ1HSP81_ORYSINo assigned EC number0.84530.99660.8469N/Ano
Q18688HSP90_CAEELNo assigned EC number0.65890.99150.8390yesno
P04809HSP83_DROPSNo assigned EC number0.65300.99490.8242yesno
Q4R4P1HS90A_MACFANo assigned EC number0.67470.99490.8062N/Ano
P06660HSP85_TRYCRNo assigned EC number0.650.95790.8082N/Ano
P30946HS90A_RABITNo assigned EC number0.680.95950.8213yesno
Q04619HS90B_CHICKNo assigned EC number0.66820.99490.8151yesno
A5A6K9HS90A_PANTRNo assigned EC number0.67310.99490.8062yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00440247
hypothetical protein (704 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_LG_XV000408
SubName- Full=Putative uncharacterized protein; (204 aa)
    ••• 0.811
fgenesh4_pm.C_LG_IV000317
SubName- Full=Putative uncharacterized protein; (354 aa)
     •  0.800
fgenesh4_pg.C_LG_II001977
cc-nbs-lrr resistance protein (920 aa)
     •  0.800
estExt_Genewise1_v1.C_440672
hypothetical protein (360 aa)
     •  0.800
eugene3.26620001
Predicted protein (75 aa)
  •     0.458

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
pfam00183529 pfam00183, HSP90, Hsp90 protein 0.0
PTZ00272701 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp 0.0
PRK05218613 PRK05218, PRK05218, heat shock protein 90; Provisi 0.0
COG0326623 COG0326, HtpG, Molecular chaperone, HSP90 family [ 0.0
PTZ00130814 PTZ00130, PTZ00130, heat shock protein 90; Provisi 1e-126
PRK14083601 PRK14083, PRK14083, HSP90 family protein; Provisio 5e-12
PRK14083601 PRK14083, PRK14083, HSP90 family protein; Provisio 7e-05
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information 
 Score =  808 bits (2089), Expect = 0.0
 Identities = 398/530 (75%), Positives = 460/530 (86%), Gaps = 15/530 (2%)

Query: 79  EYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKEEEG-------DVED 131
           EYLEERRIK+LVKKHSEFI+YPIYLW EK  EKE+ D+E++E K+E++          E+
Sbjct: 1   EYLEERRIKELVKKHSEFINYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEE 60

Query: 132 VDEEKEKEGKKKK--KIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDH 189
           VDEE+EKE KKKK  K+KE + EW+L+NK KPIW R P+++TKEEYA+FYKSLTNDWED 
Sbjct: 61  VDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVTKEEYAAFYKSLTNDWEDP 120

Query: 190 LAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLG 249
           LAVKHFSVEGQLEF+A+LFVPKRAPFDLF++ KK NNIKLYVRRVFIMD+CE+LIPEYL 
Sbjct: 121 LAVKHFSVEGQLEFRAILFVPKRAPFDLFESYKKKNNIKLYVRRVFIMDDCEDLIPEYLS 180

Query: 250 FIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSK 309
           F+KGVVDS+DLPLNISREMLQQNKILKVIRKNLVKKC+EMFNEIAE+KE Y KFY+ FSK
Sbjct: 181 FVKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLEMFNEIAEDKEQYKKFYEEFSK 240

Query: 310 NLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVE 369
           N+KLGIHED+ NRAKLA LLR+ STKS +E TSL DYVTRMKEGQKDIYYITGESKK VE
Sbjct: 241 NIKLGIHEDAANRAKLAKLLRFESTKSGDELTSLDDYVTRMKEGQKDIYYITGESKKQVE 300

Query: 370 NSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKE 429
            SPFLERLKKKGYEVLYM D IDEYA+ QLKE+EGKKLV+ TKEGLKL +E+EEEKKK+E
Sbjct: 301 KSPFLERLKKKGYEVLYMTDPIDEYAMQQLKEFEGKKLVNVTKEGLKL-EESEEEKKKRE 359

Query: 430 EKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMERIMKAQALRDN 489
           E KK FE LCK MKDILGD+VEKVVVS+R+VDSPC LVT +YGWSANMERIMKAQALRD+
Sbjct: 360 ELKKEFEELCKWMKDILGDKVEKVVVSNRLVDSPCALVTSQYGWSANMERIMKAQALRDS 419

Query: 490 SMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPN 549
           SMS+YMSSKKT+EINP + I++ELRKR EADKNDK+VKDL  LL+ETALLTSGFSL+DP 
Sbjct: 420 SMSAYMSSKKTLEINPRHPIIKELRKRVEADKNDKTVKDLARLLYETALLTSGFSLEDPK 479

Query: 550 TFGSRIHRMLKLGLSIDE-----EENADEDIDMPALEEDGAEESKMEEVD 594
            F SRI+RM+KLGLSIDE     EE+ + +++     E+ AE+SKMEEVD
Sbjct: 480 AFASRIYRMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEVD 529

Length = 529
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional Back     alignment and domain information
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional Back     alignment and domain information
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional Back     alignment and domain information
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 594
PTZ00272701 heat shock protein 83 kDa (Hsp83); Provisional 100.0
KOG0020785 consensus Endoplasmic reticulum glucose-regulated 100.0
PTZ00130814 heat shock protein 90; Provisional 100.0
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 100.0
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 100.0
PF00183531 HSP90: Hsp90 protein; InterPro: IPR001404 Molecula 100.0
PRK05218613 heat shock protein 90; Provisional 100.0
PRK14083601 HSP90 family protein; Provisional 100.0
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 97.29
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 96.72
PRK04184535 DNA topoisomerase VI subunit B; Validated 94.14
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 90.51
PRK00095617 mutL DNA mismatch repair protein; Reviewed 89.22
PRK14868795 DNA topoisomerase VI subunit B; Provisional 83.89
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.4e-152  Score=1278.03  Aligned_cols=566  Identities=64%  Similarity=1.082  Sum_probs=495.5

Q ss_pred             ccCCCCcccccccccccceeccccCeeEEEeccCCCCeEEEEECCCCceEEEeCCCCCCCCcceEEEEEeccchhhccCH
Q 007669            4 LQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLEE   83 (594)
Q Consensus         4 l~~~~~~~lIGQFGvGFyS~FmVAdkV~V~Srs~~~~~~~W~s~g~g~y~i~~~~~~~~~~~GT~I~L~lk~d~~e~l~~   83 (594)
                      ++++++.++||||||||||||||||+|+|+||++++.+|+|+|+|+|+|+|.+++ ....+|||+|+||||+|+.+|+++
T Consensus       107 ~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~~-~~~~~~GT~I~L~Lk~d~~ef~~~  185 (701)
T PTZ00272        107 LEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITSTP-ESDMKRGTRITLHLKEDQMEYLEP  185 (701)
T ss_pred             hhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeCC-CCCCCCCCEEEEEECCchHHhccH
Confidence            3344556799999999999999999999999998788999999999999999843 345689999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcceEEeeccccccccCCCCCCC----ccccccCCccccchHHhhhccccccceeeeceeeecccC
Q 007669           84 RRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE----PKKEEEGDVEDVDEEKEKEGKKKKKIKEVSHEWQLINKQ  159 (594)
Q Consensus        84 ~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vN~~  159 (594)
                      ++|++||+|||+||+|||+|+..++++.++++++++.    .++++++.+++.+++++.++++++++++++++|++||++
T Consensus       186 ~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~  265 (701)
T PTZ00272        186 RRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKH  265 (701)
T ss_pred             HHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccccccccccccccccccccccccccccccccccchhhcccC
Confidence            9999999999999999999986554333333221110    001112222222111111234556677778899999999


Q ss_pred             CCCccCCCCCCCHHHHHHHHHHhhcCcCCCceeeeeeccccceeEEEEeecCCCCCCcccccccccceEEEeeccccccc
Q 007669          160 KPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDN  239 (594)
Q Consensus       160 ~~iW~r~~~evt~eey~~Fyk~l~~~~~~Pl~~ih~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~rrVfI~d~  239 (594)
                      +|||+|+|++||+++|++|||+++++|++||+|+||++|||++|+||||||+.+|+++|+....+++|+||||||||+|+
T Consensus       266 ~~lW~r~~~~i~~eey~~Fyk~~~~~~~~Pl~~ih~~~eg~~~~~~llyiP~~~~~~~~~~~~~~~~i~LY~~rVfI~d~  345 (701)
T PTZ00272        266 KPLWTRDPKDVTKEEYAAFYKAISNDWEDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEPNKKRNNIKLYVRRVFIMDN  345 (701)
T ss_pred             cCCeecCcccCCHHHHHHHHHHhcCCcCCCceeeeeccCCceeeEEEEEeCCCCccchhhhhhccCceEEEEeeEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999998754357899999999999999


Q ss_pred             cccccccccccceeeeeCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhhHhhccccCCh
Q 007669          240 CEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDS  319 (594)
Q Consensus       240 ~~~lLP~wl~FvrGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~i~kkvl~~L~~la~d~e~y~~f~~~~~~~lK~G~~eD~  319 (594)
                      |++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|+++|+++++|++||++||.+||+|+++|.
T Consensus       346 ~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~~ki~~~l~~la~~~~~y~~f~~~~g~~lK~G~~~D~  425 (701)
T PTZ00272        346 CEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAENKEDYKQFYEQFGKNIKLGIHEDT  425 (701)
T ss_pred             hhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhhhhheeeccCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhchhcccccCCCCceecHHHHHHhhccCCceEEEEeCCcHHHHhcChhHHHHHHcCceEEeecCCccHHHHHhh
Q 007669          320 QNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQL  399 (594)
Q Consensus       320 ~~~e~l~~LLrf~ss~~~~~~~sL~eYv~rm~~~Q~~IYY~~~~~~~~~~~sp~le~~~~~g~eVL~l~dpiDE~~l~~L  399 (594)
                      .||++|++||||+||.++++++||++|++||+++|+.|||++|+|++++++|||+|.|+++|||||||++|||||+|++|
T Consensus       426 ~~~~~l~~Llrf~ss~~~~~~~sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l  505 (701)
T PTZ00272        426 ANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQV  505 (701)
T ss_pred             hHHHHHHHhhceeecCCCCceeeHHHHHHhhccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHH
Confidence            99999999999999986668999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCceeEeccccCCCCCCccHHHHhhHHHhHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCCcccHHHHH
Q 007669          400 KEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEYGWSANMER  479 (594)
Q Consensus       400 ~~~~~~~f~~V~~~~l~l~~~~~~~k~~~~~~~~e~~~L~~~lk~~L~~~V~~V~vs~rL~dsPa~lv~~e~g~s~~Mer  479 (594)
                      ++|+|++|+||+++++++++ .+++++..+..++++++|++|++++|+++|.+|++|+||+++||||+++++|++++|+|
T Consensus       506 ~ey~~k~f~sV~~~~~~l~~-~~~e~~~~~~~~~~~~~L~~~~k~~L~~kV~~VkvS~RL~~sPa~lv~~e~g~s~~Mer  584 (701)
T PTZ00272        506 KDFEDKKFACLTKEGVHFEE-SEEEKQQREEEKAACEKLCKTMKEVLGDKVEKVIVSERLSTSPCILVTSEFGWSAHMEQ  584 (701)
T ss_pred             HhcCCCceEecccccccccc-cccchhhhhhhHHHHHHHHHHHHHHhCCcccEEEEeccCCCCCeEEEecccchhHHHHH
Confidence            99999999999999888753 12222222234457999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCcccccCCCceEEeCCCChHHHHHHHhhhccCCchhHHHHHHHHhHHHHHhCCCCCCCHHHHHHHHHHHH
Q 007669          480 IMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEADKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRML  559 (594)
Q Consensus       480 imkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~~~~e~~~~~~~~Lyd~AlL~~G~~l~d~~~f~~r~~~lL  559 (594)
                      ||++|+.++..+..++..++||||||+||||++|+++...+.+++.++.+|+||||+|||++|++++||+.|++|+|+||
T Consensus       585 imkaq~~~~~~~~~~~~~kkiLEINP~HpiIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL  664 (701)
T PTZ00272        585 IMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMI  664 (701)
T ss_pred             HHHhcccccccccccccCCeEEEECCCCHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Confidence            99999754333334556789999999999999998865444445679999999999999999999999999999999999


Q ss_pred             HhcCCCCccccc
Q 007669          560 KLGLSIDEEENA  571 (594)
Q Consensus       560 ~~~l~~~~~~~~  571 (594)
                      ..+|+++.+++.
T Consensus       665 ~~~l~~~~~~~~  676 (701)
T PTZ00272        665 KLGLSLDEEEEE  676 (701)
T ss_pred             HHhcCCCccccc
Confidence            889999987654

>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell [] Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
3q6m_A448 Crystal Structure Of Human Mc-Hsp90 In C2221 Space 1e-168
3hjc_A444 Crystal Structure Of The Carboxy-Terminal Domain Of 1e-154
2cg9_A677 Crystal Structure Of An Hsp90-Sba1 Closed Chaperone 1e-153
2cge_A405 Crystal Structure Of An Hsp90-Sba1 Closed Chaperone 1e-151
2o1u_A666 Structure Of Full Length Grp94 With Amp-Pnp Bound L 1e-137
3pry_A268 Crystal Structure Of The Middle Domain Of Human Hsp 1e-110
1hk7_A288 Middle Domain Of Hsp90 Length = 288 1e-110
1usv_A260 The Structure Of The Complex Between Aha1 And Hsp90 1e-109
1usu_A260 The Structure Of The Complex Between Aha1 And Hsp90 1e-108
2o1t_A450 Structure Of Middle Plus C-Terminal Domains (M+c) O 1e-105
2o1w_A506 Structure Of N-Terminal Plus Middle Domains (N+m) O 1e-104
2iop_A624 Crystal Structure Of Full-Length Htpg, The Escheric 3e-89
1y4s_A559 Conformation Rearrangement Of Heat Shock Protein 90 5e-83
2gq0_A303 Crystal Structure Of The Middle Domain Of Htpg, The 2e-60
1y6z_A263 Middle Domain Of Plasmodium Falciparum Putative Hea 2e-54
2jki_A223 Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng 5e-54
2xcm_A214 Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord 1e-53
1uy6_A236 Human Hsp90-Alpha With 9-Butyl-8-(3,4,5-Trimethoxy- 3e-45
2ccs_A236 Human Hsp90 With 4-Chloro-6-(4-Piperazin-1-Yl-1h-Py 3e-45
2bsm_A235 Novel, Potent Small Molecule Inhibitors Of The Mole 3e-45
3qdd_A237 Hsp90a N-Terminal Domain In Complex With Biib021 Le 3e-45
3inw_A228 Hsp90 N-Terminal Domain With Pochoxime A Length = 2 4e-45
1uyi_A236 Human Hsp90-Alpha With 8-(2,5-Dimethoxy-Benzyl)-2-F 4e-45
2yi0_A229 Structural Characterization Of 5-Aryl-4-(5-Substitu 4e-45
3d0b_A232 Crystal Structure Of Benzamide Tetrahydro-4h-Carbaz 4e-45
1byq_A228 Hsp90 N-Terminal Domain Bound To Adp-Mg Length = 22 4e-45
3b24_A229 Hsp90 Alpha N-Terminal Domain In Complex With An Am 4e-45
3r4m_A228 Optimization Of Potent, Selective, And Orally Bioav 4e-45
4awo_A230 Complex Of Hsp90 Atpase Domain With Tropane Derived 4e-45
2ye7_A252 Hsp90 Inhibitors And Drugs From Fragment And Virtua 4e-45
2ye2_A252 Hsp90 Inhibitors And Drugs From Fragment And Virtua 4e-45
3hhu_A224 Human Heat-Shock Protein 90 (Hsp90) In Complex With 4e-45
4egh_A232 Hsp90-Alpha Atpase Domain In Complex With (4-Hydrox 4e-45
3bm9_A226 Discovery Of Benzisoxazoles As Potent Inhibitors Of 4e-45
4eeh_A229 Hsp90 Alpha N-Terminal Domain In Complex With An In 4e-45
3k98_A232 Hsp90 N-Terminal Domain In Complex With (1r)-2-(5-C 4e-45
3eko_A226 Dihydroxylphenyl Amides As Inhibitors Of The Hsp90 4e-45
3tuh_A209 Crystal Structure Of The N-Terminal Domain Of An Hs 4e-45
3k97_A251 Hsp90 N-Terminal Domain In Complex With 4-Chloro-6- 4e-45
2fwy_A256 Structure Of Human Hsp90-Alpha Bound To The Potent 4e-45
3ft5_A249 Structure Of Hsp90 Bound With A Novel Fragment Leng 4e-45
2k5b_A210 Human Cdc37-Hsp90 Docking Model Based On Nmr Length 5e-45
2qfo_A207 Hsp90 Complexed With A143571 And A516383 Length = 2 5e-45
2jjc_A218 Hsp90 Alpha Atpase Domain With Bound Small Molecule 5e-45
2qf6_A207 Hsp90 Complexed With A56322 Length = 207 5e-45
1osf_A215 Human Hsp90 In Complex With 17-desmethoxy-17-n,n- D 5e-45
2yjw_A209 Tricyclic Series Of Hsp90 Inhibitors Length = 209 5e-45
2xjg_A249 Structure Of Hsp90 With Small Molecule Inhibitor Bo 5e-45
2xdu_A236 Structre Of Hsp90 With Small Molecule Inhibitor Bou 6e-45
1uym_A220 Human Hsp90-Beta With Pu3 (9-Butyl-8(3,4,5-Trimetho 7e-45
1yc1_A264 Crystal Structures Of Human Hsp90alpha Complexed Wi 7e-45
3nmq_A239 Hsp90b N-Terminal Domain In Complex With Ec44, A Py 1e-44
2yee_A252 Hsp90 Inhibitors And Drugs From Fragment And Virtua 3e-44
3k60_A223 Crystal Structure Of N-Terminal Domain Of Plasmodiu 3e-44
2xjj_A249 Structre Of Hsp90 With Small Molecule Inhibitor Bou 3e-44
2cgf_A225 A Radicicol Analogue Bound To The Atp Binding Site 2e-40
1us7_A214 Complex Of Hsp90 And P50 Length = 214 2e-40
2xx2_A214 Macrolactone Inhibitor Bound To Hsp90 N-Term Length 3e-40
1am1_A213 Atp Binding Site In The Hsp90 Molecular Chaperone L 3e-40
2bre_A219 Structure Of A Hsp90 Inhibitor Bound To The N-Termi 3e-40
1a4h_A230 Structure Of The N-Terminal Domain Of The Yeast Hsp 3e-40
1ah8_A220 Structure Of The Orthorhombic Form Of The N-Termina 3e-40
2yge_A220 E88g-n92l Mutant Of N-term Hsp90 Complexed With Gel 3e-40
2wep_A220 Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Adp 3e-40
1bgq_A225 Radicicol Bound To The Atp Binding Site Of The N-Te 3e-40
2yga_A220 E88g-n92l Mutant Of N-term Hsp90 Complexed With Gel 3e-40
2akp_A186 Hsp90 Delta24-n210 Mutant Length = 186 4e-40
1zw9_A240 Yeast Hsp82 In Complex With The Novel Hsp90 Inhibit 4e-40
3c0e_A240 Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 9 4e-40
2ygf_A220 L89v, L93i And V136m Mutant Of N-term Hsp90 Complex 8e-40
4gqt_A227 N-Terminal Domain Of C. Elegans Hsp90 Length = 227 8e-37
3h80_A231 Crystal Structure Of The Amino-Terminal Domain Of H 9e-37
3o6o_A214 Crystal Structure Of The N-Terminal Domain Of An Hs 9e-36
3opd_A231 Crystal Structure Of The N-Terminal Domain Of An Hs 1e-35
3peh_A281 Crystal Structure Of The N-Terminal Domain Of An Hs 7e-31
1qy5_A269 Crystal Structure Of The N-Domain Of The Er Hsp90 C 4e-29
1u0y_A273 N-Domain Of Grp94, With The Charged Domain, In Comp 4e-29
1u2o_A236 Crystal Structure Of The N-Domain Of Grp94 Lacking 6e-29
2esa_A236 Grp94 N-Terminal Domain Bound To Geldanamycin: Effe 6e-29
3ied_A272 Crystal Structure Of N-Terminal Domain Of Plasmodiu 2e-20
2ior_A235 Crystal Structure Of The N-Terminal Domain Of Htpg, 1e-14
1sf8_A126 Crystal Structure Of The Carboxy-terminal Domain Of 3e-04
>pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  589 bits (1518), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 292/441 (66%), Positives = 340/441 (77%), Gaps = 8/441 (1%)
Query: 160 KPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFD 219
           KPIW R P++IT EEY  FYKSLTNDWEDHLAVKHFSVEGQLEF+A+LFVP+RAPFDLF+
Sbjct: 4   KPIWTRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE 63
Query: 220 TRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIR 279
            RKK NNIKLYVRRVFIMDNCEELIPEYL FI+GVVDS+DLPLNISREMLQQ+KILKVIR
Sbjct: 64  NRKKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIR 123
Query: 280 KNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEE 339
           KNLVKKC+E+F E+AE+KE+Y KFY+ FSKN+KLGIHEDSQNR KL++LLRY+++ S +E
Sbjct: 124 KNLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDE 183
Query: 340 FTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQL 399
             SLKDY TRMKE QK IYYITGE+K  V NS F+ERL+K G EV+YM++ IDEY V QL
Sbjct: 184 MVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQQL 243
Query: 400 KEYEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXSFENLCKTMKDILGDRVEKVVVSDRI 459
           KE+EGK LVS T                        ENLCK MKDIL  +VEKVVVS+R+
Sbjct: 244 KEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKF-ENLCKIMKDILEKKVEKVVVSNRL 302
Query: 460 VDSPCCLVTGEYGWSANMERIMKAQALRDNXXXXXXXXXXTMEINPDNGIMEELRKRAEA 519
           V SPCC+VT  YGW+ANMERIMKAQALRDN           +EINPD+ I+E LR++AEA
Sbjct: 303 VTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEA 362
Query: 520 DKNDKSVKDLTMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLS------XXXXXXXXX 573
           DKNDKSVKDL +LL+ETALL+SGFSL+DP T  +RI+RM+KLGL                
Sbjct: 363 DKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADDTSAAV 422
Query: 574 XXXMPALEEDGAEESKMEEVD 594
              MP LE D  + S+MEEVD
Sbjct: 423 TEEMPPLEGDD-DTSRMEEVD 442
>pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90 From Leishmania Major, Lmjf33.0312 Length = 444 Back     alignment and structure
>pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone Complex Length = 677 Back     alignment and structure
>pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone Complex Length = 405 Back     alignment and structure
>pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound Length = 666 Back     alignment and structure
>pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta Refined At 2.3 A Resolution Length = 268 Back     alignment and structure
>pdb|1HK7|A Chain A, Middle Domain Of Hsp90 Length = 288 Back     alignment and structure
>pdb|1USV|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90 Length = 260 Back     alignment and structure
>pdb|1USU|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90 Length = 260 Back     alignment and structure
>pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94 Length = 450 Back     alignment and structure
>pdb|2O1W|A Chain A, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94 Length = 506 Back     alignment and structure
>pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia Coli Hsp90, Bound To Adp Length = 624 Back     alignment and structure
>pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon Adp Binding Length = 559 Back     alignment and structure
>pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E. Coli Hsp90 Length = 303 Back     alignment and structure
>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock Protein Pf14_0417 Length = 263 Back     alignment and structure
>pdb|2JKI|A Chain A, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 223 Back     alignment and structure
>pdb|2XCM|A Chain A, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 214 Back     alignment and structure
>pdb|1UY6|A Chain A, Human Hsp90-Alpha With 9-Butyl-8-(3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine Length = 236 Back     alignment and structure
>pdb|2CCS|A Chain A, Human Hsp90 With 4-Chloro-6-(4-Piperazin-1-Yl-1h-Pyrazol-3- Yl)-Benzene-1,2-Diol Length = 236 Back     alignment and structure
>pdb|2BSM|A Chain A, Novel, Potent Small Molecule Inhibitors Of The Molecular Chaperone Hsp90 Discovered Through Structure-Based Design Length = 235 Back     alignment and structure
>pdb|3QDD|A Chain A, Hsp90a N-Terminal Domain In Complex With Biib021 Length = 237 Back     alignment and structure
>pdb|3INW|A Chain A, Hsp90 N-Terminal Domain With Pochoxime A Length = 228 Back     alignment and structure
>pdb|1UYI|A Chain A, Human Hsp90-Alpha With 8-(2,5-Dimethoxy-Benzyl)-2-Fluoro-9- Pent-9h-Purin-6-Ylamine Length = 236 Back     alignment and structure
>pdb|2YI0|A Chain A, Structural Characterization Of 5-Aryl-4-(5-Substituted-2-4- Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors. Length = 229 Back     alignment and structure
>pdb|3D0B|A Chain A, Crystal Structure Of Benzamide Tetrahydro-4h-Carbazol-4-One Bound To Hsp90 Length = 232 Back     alignment and structure
>pdb|1BYQ|A Chain A, Hsp90 N-Terminal Domain Bound To Adp-Mg Length = 228 Back     alignment and structure
>pdb|3B24|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Aminotriazine Fragment Molecule Length = 229 Back     alignment and structure
>pdb|3R4M|A Chain A, Optimization Of Potent, Selective, And Orally Bioavailable Pyrrolodinopyrimidine-Containing Inhibitors Of Heat Shock Protein 90. Identification Of Development Candidate 2-Amino-4-{4-Chloro-2-[2-(4- Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2- Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3, 4-D]pyrimidine-6-Carboxamide Length = 228 Back     alignment and structure
>pdb|4AWO|A Chain A, Complex Of Hsp90 Atpase Domain With Tropane Derived Inhibitors Length = 230 Back     alignment and structure
>pdb|2YE7|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening Length = 252 Back     alignment and structure
>pdb|2YE2|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening Length = 252 Back     alignment and structure
>pdb|3HHU|A Chain A, Human Heat-Shock Protein 90 (Hsp90) In Complex With {4-[3- (2,4-Dihydroxy-5-Isopropyl-Phenyl)-5-Thioxo- 1,5-Dihydro- [1,2,4]triazol-4-Yl]-Benzyl}-Carbamic Acid Ethyl Ester {zk 2819} Length = 224 Back     alignment and structure
>pdb|4EGH|A Chain A, Hsp90-Alpha Atpase Domain In Complex With (4-Hydroxyphenyl)morpholin- 4-Yl Methanone Length = 232 Back     alignment and structure
>pdb|3BM9|A Chain A, Discovery Of Benzisoxazoles As Potent Inhibitors Of Chaperone Hsp90 Length = 226 Back     alignment and structure
>pdb|4EEH|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor 3-(4- Hydroxy-Phenyl)-1h-Indazol-6-Ol Length = 229 Back     alignment and structure
>pdb|3K98|A Chain A, Hsp90 N-Terminal Domain In Complex With (1r)-2-(5-Chloro-2, 4-Dihydroxybenzoyl)-N-Ethylisoindoline-1-Carboxamide Length = 232 Back     alignment and structure
>pdb|3EKO|A Chain A, Dihydroxylphenyl Amides As Inhibitors Of The Hsp90 Molecular Chaperone Length = 226 Back     alignment and structure
>pdb|3TUH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 In The Presence Of An The Inhibitor Ganetespib Length = 209 Back     alignment and structure
>pdb|3K97|A Chain A, Hsp90 N-Terminal Domain In Complex With 4-Chloro-6-{[(2r)-2- (2-Methylphenyl)pyrrolidin-1-Yl]carbonyl}benzene-1, 3-Diol Length = 251 Back     alignment and structure
>pdb|2FWY|A Chain A, Structure Of Human Hsp90-Alpha Bound To The Potent Water Soluble Inhibitor Pu-H64 Length = 256 Back     alignment and structure
>pdb|3FT5|A Chain A, Structure Of Hsp90 Bound With A Novel Fragment Length = 249 Back     alignment and structure
>pdb|2K5B|A Chain A, Human Cdc37-Hsp90 Docking Model Based On Nmr Length = 210 Back     alignment and structure
>pdb|2QFO|A Chain A, Hsp90 Complexed With A143571 And A516383 Length = 207 Back     alignment and structure
>pdb|2JJC|A Chain A, Hsp90 Alpha Atpase Domain With Bound Small Molecule Fragment Length = 218 Back     alignment and structure
>pdb|2QF6|A Chain A, Hsp90 Complexed With A56322 Length = 207 Back     alignment and structure
>pdb|1OSF|A Chain A, Human Hsp90 In Complex With 17-desmethoxy-17-n,n- Dimethylaminoethylamino-geldanamycin Length = 215 Back     alignment and structure
>pdb|2YJW|A Chain A, Tricyclic Series Of Hsp90 Inhibitors Length = 209 Back     alignment and structure
>pdb|2XJG|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound Length = 249 Back     alignment and structure
>pdb|2XDU|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound Length = 236 Back     alignment and structure
>pdb|1UYM|A Chain A, Human Hsp90-Beta With Pu3 (9-Butyl-8(3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine) Length = 220 Back     alignment and structure
>pdb|1YC1|A Chain A, Crystal Structures Of Human Hsp90alpha Complexed With Dihydroxyphenylpyrazoles Length = 264 Back     alignment and structure
>pdb|3NMQ|A Chain A, Hsp90b N-Terminal Domain In Complex With Ec44, A Pyrrolo-Pyrimidine Methoxypyridine Inhibitor Length = 239 Back     alignment and structure
>pdb|2YEE|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening Length = 252 Back     alignment and structure
>pdb|3K60|A Chain A, Crystal Structure Of N-Terminal Domain Of Plasmodium Falciparum Hsp90 (Pf07_0029) Bound To Adp Length = 223 Back     alignment and structure
>pdb|2XJJ|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound Length = 249 Back     alignment and structure
>pdb|2CGF|A Chain A, A Radicicol Analogue Bound To The Atp Binding Site Of The N- Terminal Domain Of The Yeast Hsp90 Chaperone Length = 225 Back     alignment and structure
>pdb|1US7|A Chain A, Complex Of Hsp90 And P50 Length = 214 Back     alignment and structure
>pdb|2XX2|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term Length = 214 Back     alignment and structure
>pdb|1AM1|A Chain A, Atp Binding Site In The Hsp90 Molecular Chaperone Length = 213 Back     alignment and structure
>pdb|2BRE|A Chain A, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of Yeast Hsp90. Length = 219 Back     alignment and structure
>pdb|1A4H|A Chain A, Structure Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone In Complex With Geldanamycin Length = 230 Back     alignment and structure
>pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone Length = 220 Back     alignment and structure
>pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With Geldanamycin Length = 220 Back     alignment and structure
>pdb|2WEP|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Adp Length = 220 Back     alignment and structure
>pdb|1BGQ|A Chain A, Radicicol Bound To The Atp Binding Site Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone Length = 225 Back     alignment and structure
>pdb|2YGA|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With Geldanamycin Length = 220 Back     alignment and structure
>pdb|2AKP|A Chain A, Hsp90 Delta24-n210 Mutant Length = 186 Back     alignment and structure
>pdb|1ZW9|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor 8-(6-Bromo- Benzo[1, 3]dioxol-5-Ylsulfanyl)-9-(3-Isopropylamino-Propyl)- Adenine Length = 240 Back     alignment and structure
>pdb|3C0E|A Chain A, Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 98-99 Ks- Aa Length = 240 Back     alignment and structure
>pdb|2YGF|A Chain A, L89v, L93i And V136m Mutant Of N-term Hsp90 Complexed With Geldanamycin Length = 220 Back     alignment and structure
>pdb|4GQT|A Chain A, N-Terminal Domain Of C. Elegans Hsp90 Length = 227 Back     alignment and structure
>pdb|3H80|A Chain A, Crystal Structure Of The Amino-Terminal Domain Of Hsp90 From Leishmania Major, Lmjf33.0312:m1-K213 Length = 231 Back     alignment and structure
>pdb|3O6O|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of An The Inhibitor Biib021 Length = 214 Back     alignment and structure
>pdb|3OPD|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of A Benzamide Derivative Length = 231 Back     alignment and structure
>pdb|3PEH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From Plasmodium Falciparum, Pfl1070c In The Presence Of A Thienopyrimidine Derivative Length = 281 Back     alignment and structure
>pdb|1QY5|A Chain A, Crystal Structure Of The N-Domain Of The Er Hsp90 Chaperone Grp94 In Complex With The Specific Ligand Neca Length = 269 Back     alignment and structure
>pdb|1U0Y|A Chain A, N-Domain Of Grp94, With The Charged Domain, In Complex With The Novel Ligand N-Propyl Carboxyamido Adenosine Length = 273 Back     alignment and structure
>pdb|1U2O|A Chain A, Crystal Structure Of The N-Domain Of Grp94 Lacking The Charged Domain In Complex With Neca Length = 236 Back     alignment and structure
>pdb|2ESA|A Chain A, Grp94 N-Terminal Domain Bound To Geldanamycin: Effects Of Mutants 168- 169 Ks-Aa Length = 236 Back     alignment and structure
>pdb|3IED|A Chain A, Crystal Structure Of N-Terminal Domain Of Plasmodium Falciparum Hsp90 (Pf14_0417) In Complex With Amppn Length = 272 Back     alignment and structure
>pdb|2IOR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Htpg, The Escherichia Coli Hsp90, Bound To Adp Length = 235 Back     alignment and structure
>pdb|1SF8|A Chain A, Crystal Structure Of The Carboxy-terminal Domain Of Htpg, The E. Coli Hsp90 Length = 126 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
2cg9_A677 ATP-dependent molecular chaperone HSP82; chaperone 0.0
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 0.0
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 0.0
3hjc_A444 Heat shock protein 83-1; sleeping sickness, struct 0.0
3q6m_A448 Heat shock protein HSP 90-alpha; three domains, tr 0.0
2cge_A405 ATP-dependent molecular chaperone HSP82; chaperone 0.0
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 0.0
1hk7_A288 Heat shock protein HSP82; ATPase, chaperone; 2.5A 0.0
3pry_A268 Heat shock protein HSP 90-beta; structural genomic 1e-179
1usu_A260 Heat shock protein HSP82; chaperone/complex, chape 1e-174
2gq0_A303 Chaperone protein HTPG; molecular chaperone, HSP90 1e-173
1y6z_A263 Heat shock protein, putative; chaperone, structura 1e-168
3peh_A281 Endoplasmin homolog; structural genomics, structur 2e-75
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 1e-74
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 1e-70
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 2e-70
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 3e-70
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 9e-70
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 3e-67
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 8e-64
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 2e-55
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 1e-53
1sf8_A126 Chaperone protein HTPG; four helix bundle dimeriza 1e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 Back     alignment and structure
 Score =  829 bits (2143), Expect = 0.0
 Identities = 369/575 (64%), Positives = 463/575 (80%), Gaps = 13/575 (2%)

Query: 1   MEALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSG 60
           MEAL AGADVSMIGQFGVGFYS +LVA+RV V +K NDDEQYIWES AGGSFTVT D   
Sbjct: 105 MEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVN 164

Query: 61  EPLGRGTKMTLYLKEDQLEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDE 120
           E +GRGT + L+LK+DQLEYLEE+RIK+++K+HSEF++YPI L   K  EKE+   E+++
Sbjct: 165 ERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEK 224

Query: 121 PKKEEEGD----------VEDVDEEKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEI 170
             +E++ +            +  +E+E++  K KK+KE   E + +NK KP+W R P +I
Sbjct: 225 KDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDI 284

Query: 171 TKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLY 230
           T+EEY +FYKS++NDWED L VKHFSVEGQLEF+A+LF+PKRAPFDLF+++KK NNIKLY
Sbjct: 285 TQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLY 344

Query: 231 VRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMF 290
           VRRVFI D  E+LIPE+L F+KGVVDS+DLPLN+SREMLQQNKI+KVIRKN+VKK IE F
Sbjct: 345 VRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAF 404

Query: 291 NEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRM 350
           NEIAE+ E + KFY AFSKN+KLG+HED+QNRA LA LLRY+STKS +E TSL DYVTRM
Sbjct: 405 NEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRM 464

Query: 351 KEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQLKEYEGKKLVSA 410
            E QK+IYYITGES KAVE SPFL+ LK K +EVL++ D IDEYA  QLKE+EGK LV  
Sbjct: 465 PEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDI 524

Query: 411 TKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGE 470
           TK+     +ET+EEK ++E++ K +E L K +K+ILGD+VEKVVVS +++D+P  + TG+
Sbjct: 525 TKDF--ELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQ 582

Query: 471 YGWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRA-EADKNDKSVKDL 529
           +GWSANMERIMKAQALRD+SMSSYMSSKKT EI+P + I++EL+KR  E    DK+VKDL
Sbjct: 583 FGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDL 642

Query: 530 TMLLFETALLTSGFSLDDPNTFGSRIHRMLKLGLS 564
           T LL+ETALLTSGFSLD+P +F SRI+R++ LGL+
Sbjct: 643 TKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 Back     alignment and structure
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major} Length = 444 Back     alignment and structure
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A Length = 448 Back     alignment and structure
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae} Length = 405 Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 Back     alignment and structure
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8 Length = 288 Back     alignment and structure
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} Length = 268 Back     alignment and structure
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A Length = 260 Back     alignment and structure
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli} Length = 303 Back     alignment and structure
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum} Length = 263 Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 Back     alignment and structure
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1 Length = 126 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query594
2cg9_A677 ATP-dependent molecular chaperone HSP82; chaperone 100.0
2o1u_A666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 100.0
2ioq_A624 Chaperone protein HTPG; heat shock protein, HSP90; 100.0
3hjc_A444 Heat shock protein 83-1; sleeping sickness, struct 100.0
3q6m_A448 Heat shock protein HSP 90-alpha; three domains, tr 100.0
2cge_A405 ATP-dependent molecular chaperone HSP82; chaperone 100.0
1y4s_A559 Chaperone protein HTPG; HSP90, molecular chaperone 100.0
1hk7_A288 Heat shock protein HSP82; ATPase, chaperone; 2.5A 100.0
2gq0_A303 Chaperone protein HTPG; molecular chaperone, HSP90 100.0
3pry_A268 Heat shock protein HSP 90-beta; structural genomic 100.0
1usu_A260 Heat shock protein HSP82; chaperone/complex, chape 100.0
1y6z_A263 Heat shock protein, putative; chaperone, structura 100.0
3peh_A281 Endoplasmin homolog; structural genomics, structur 100.0
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 100.0
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 99.98
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 99.97
1sf8_A126 Chaperone protein HTPG; four helix bundle dimeriza 99.97
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 99.95
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 99.94
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 99.93
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 99.91
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 99.9
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 99.82
1b63_A333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.85
1h7s_A365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.25
3h4l_A367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.16
3na3_A348 DNA mismatch repair protein MLH1; MUTL protein hom 97.65
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 95.44
1kij_A390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 95.07
2zbk_B530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 94.72
2q2e_B621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 91.48
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 88.75
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=8.7e-150  Score=1259.89  Aligned_cols=559  Identities=66%  Similarity=1.051  Sum_probs=470.1

Q ss_pred             cccCCCCcccccccccccceeccccCeeEEEeccCCCCeEEEEECCCCceEEEeCCCCCCCCcceEEEEEeccchhhccC
Q 007669            3 ALQAGADVSMIGQFGVGFYSAYLVAERVVVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKMTLYLKEDQLEYLE   82 (594)
Q Consensus         3 ~l~~~~~~~lIGQFGvGFyS~FmVAdkV~V~Srs~~~~~~~W~s~g~g~y~i~~~~~~~~~~~GT~I~L~lk~d~~e~l~   82 (594)
                      ++++++|.++|||||||||||||||++|+|+||++++.+|+|+|+|+|+|+|.+++.+...+|||+|+||||+++.+||+
T Consensus       107 kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~d~~e~l~  186 (677)
T 2cg9_A          107 ALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLE  186 (677)
T ss_dssp             CCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEECTTGGGGGC
T ss_pred             hhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCCCeEEEEEEcchhhcccc
Confidence            44444567899999999999999999999999999888999999999999999843234568999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcceEEeeccccccccCCCCCC-----------CccccccCCccccchHHhhhccccccceeeec
Q 007669           83 ERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDD-----------EPKKEEEGDVEDVDEEKEKEGKKKKKIKEVSH  151 (594)
Q Consensus        83 ~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (594)
                      .++|++||+|||+||+|||+|+++++.+.++++++++           +.+++++++++++++++ ++++++++++++..
T Consensus       187 ~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~  265 (677)
T 2cg9_A          187 EKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEE-EKKPKTKKVKEEVQ  265 (677)
T ss_dssp             HHHHHHHHHHHSTTCSSCEEECCCCCCCCC----------------------------------------------CCCC
T ss_pred             HHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhccccccccccccccccccccccccchh-hhcccccccccccc
Confidence            9999999999999999999998655443333222110           00111122222222111 01234556666678


Q ss_pred             eeeecccCCCCccCCCCCCCHHHHHHHHHHhhcCcCCCceeeeeeccccceeEEEEeecCCCCCCcccccccccceEEEe
Q 007669          152 EWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYV  231 (594)
Q Consensus       152 ~~~~vN~~~~iW~r~~~evt~eey~~Fyk~l~~~~~~Pl~~ih~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~  231 (594)
                      +|++||+++|||+|+|++||+|||.+|||+++++|++||+|+||++||+++|+||||||+++|+++|++.+.++||+|||
T Consensus       266 e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~ikLYv  345 (677)
T 2cg9_A          266 EIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYV  345 (677)
T ss_dssp             CBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSSSCEEEEEEECSSCCC---------CCSEEEE
T ss_pred             cceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEecccccceEEEEEEEcCCCchhhhhhhhccCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999997555679999999


Q ss_pred             eccccccccccccccccccceeeeeCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhhHh
Q 007669          232 RRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNL  311 (594)
Q Consensus       232 rrVfI~d~~~~lLP~wl~FvrGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~i~kkvl~~L~~la~d~e~y~~f~~~~~~~l  311 (594)
                      |||||||+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++||+++|.+|++|+++|++||++||.+|
T Consensus       346 ~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~~~e~y~~f~~~fg~~l  425 (677)
T 2cg9_A          346 RRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNI  425 (677)
T ss_dssp             TTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHH
T ss_pred             eeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCChhhHHHHhchhcccccCCCCceecHHHHHHhhccCCceEEEEeCCcHHHHhcChhHHHHHHcCceEEeecCCc
Q 007669          312 KLGIHEDSQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAI  391 (594)
Q Consensus       312 K~G~~eD~~~~e~l~~LLrf~ss~~~~~~~sL~eYv~rm~~~Q~~IYY~~~~~~~~~~~sp~le~~~~~g~eVL~l~dpi  391 (594)
                      |+|+++|+.||++|++||||+||.++++++||++|++||+++|+.|||++|+|++++++|||+|.|+++|||||||++||
T Consensus       426 K~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~i  505 (677)
T 2cg9_A          426 KLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPI  505 (677)
T ss_dssp             HHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCEEEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHH
T ss_pred             hhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCceEEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCch
Confidence            99999999999999999999999876689999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHhhhhccCceeEeccccCCCCCCccHHHHhhHHHhHHhHHHHHHHHHHHhCCceeEEEEeecCCCCCeEEEeCCC
Q 007669          392 DEYAVGQLKEYEGKKLVSATKEGLKLDDETEEEKKKKEEKKKSFENLCKTMKDILGDRVEKVVVSDRIVDSPCCLVTGEY  471 (594)
Q Consensus       392 DE~~l~~L~~~~~~~f~~V~~~~l~l~~~~~~~k~~~~~~~~e~~~L~~~lk~~L~~~V~~V~vs~rL~dsPa~lv~~e~  471 (594)
                      ||++|++|.+|+|++|++|+++ +++++ .+++++..++.++++++|++|||++|+++|.+|++|+||+++|||||++++
T Consensus       506 De~~~~~l~e~~gk~~~~v~k~-l~l~~-~e~~~~~~~~~~~~~~~L~~~~k~~L~~~v~~V~~s~rl~~sP~~lv~~~~  583 (677)
T 2cg9_A          506 DEYAFTQLKEFEGKTLVDITKD-FELEE-TDEEKAEREKEIKEYEPLTKALKEILGDQVEKVVVSYKLLDAPAAIRTGQF  583 (677)
T ss_dssp             HHHHHGGGSCBTTBEEECSCCC-CCSCS-STTSSTTHHHHHGGGHHHHHHHHHTTCSSCSCEECCSSCSSSCEEEECCTT
T ss_pred             HHHHHHHHHHhCCceEEEeecc-ccccc-chhhhhhhhhhHHHHHHHHHHHHHhcCCcceEEEEeccCCCCCEEEEeCcc
Confidence            9999999999999999999999 88865 333344445567789999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHhhcCCCcccccCCCceEEeCCCChHHHHHHHhhhcc-CCchhHHHHHHHHhHHHHHhCCCCCCCHHH
Q 007669          472 GWSANMERIMKAQALRDNSMSSYMSSKKTMEINPDNGIMEELRKRAEAD-KNDKSVKDLTMLLFETALLTSGFSLDDPNT  550 (594)
Q Consensus       472 g~s~~Merimkaq~~~~~~~~~~~~~k~~LEINp~HpLIk~L~~~~~~~-~~~e~~~~~~~~Lyd~AlL~~G~~l~d~~~  550 (594)
                      |||++|+|||++|++.++.+.+++..+++|||||+||||++|..+...+ .+++.++++|++|||||||++|++++||+.
T Consensus       584 ~~s~~merimka~~~~d~~~~~~~~~k~~LeiNp~hpli~~L~~~~~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~  663 (677)
T 2cg9_A          584 GWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTS  663 (677)
T ss_dssp             SCCHHHHHHHTTCC-------------CEEEECTTCHHHHHHHHHHHTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTH
T ss_pred             cccHHHHHHHHHhhccccccccccccCceEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCccCHHH
Confidence            9999999999998866555555677899999999999999998876443 345668999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 007669          551 FGSRIHRMLKLGLS  564 (594)
Q Consensus       551 f~~r~~~lL~~~l~  564 (594)
                      |++|+|+||.++||
T Consensus       664 f~~ri~~ll~~~l~  677 (677)
T 2cg9_A          664 FASRINRLISLGLN  677 (677)
T ss_dssp             HHHHHHHTSSSSCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987664
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major} Back     alignment and structure
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A Back     alignment and structure
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae} Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8 Back     alignment and structure
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli} Back     alignment and structure
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8 Back     alignment and structure
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A Back     alignment and structure
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum} Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 594
d1usua_256 d.14.1.8 (A:) Heat shock protein hsp82 {Baker's ye 1e-105
d1sf8a_115 d.271.1.1 (A:) Chaperone protein HtpG {Escherichia 1e-32
d2iwxa1213 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharo 3e-29
d1uyla_208 d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 1e-27
d2gqpa1227 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) 1e-25
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 256 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Hsp90 middle domain
domain: Heat shock protein hsp82
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  316 bits (811), Expect = e-105
 Identities = 184/254 (72%), Positives = 218/254 (85%)

Query: 160 KPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFD 219
           KP+W R P +IT+EEY +FYKS++NDWED L VKHFSVEGQLEF+A+LF+PKRAPFDLF+
Sbjct: 3   KPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFE 62

Query: 220 TRKKMNNIKLYVRRVFIMDNCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIR 279
           ++KK NNIKLYVRRVFI D  E+LIPE+L F+KGVVDS+DLPLN+SREMLQQNKI+KVIR
Sbjct: 63  SKKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIR 122

Query: 280 KNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHEDSQNRAKLADLLRYHSTKSSEE 339
           KN+VKK IE FNEIAE+ E + KFY AFSKN+KLG+HED+QNRA LA LLRY+STKS +E
Sbjct: 123 KNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 182

Query: 340 FTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQL 399
            TSL DYVTRM E QK+IYYITGES K+VE SPFL+ LK K +EVL++ D IDEYA  QL
Sbjct: 183 LTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQL 242

Query: 400 KEYEGKKLVSATKE 413
           KE+EGK LV  TK+
Sbjct: 243 KEFEGKTLVDITKD 256
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Length = 208 Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Length = 227 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query594
d1usua_256 Heat shock protein hsp82 {Baker's yeast (Saccharom 100.0
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 100.0
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.97
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1sf8a_115 Chaperone protein HtpG {Escherichia coli [TaxId: 5 99.97
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 93.6
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 88.76
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Hsp90 middle domain
domain: Heat shock protein hsp82
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-87  Score=674.86  Aligned_cols=255  Identities=72%  Similarity=1.158  Sum_probs=240.2

Q ss_pred             CCCCccCCCCCCCHHHHHHHHHHhhcCcCCCceeeeeeccccceeEEEEeecCCCCCCcccccccccceEEEeecccccc
Q 007669          159 QKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMD  238 (594)
Q Consensus       159 ~~~iW~r~~~evt~eey~~Fyk~l~~~~~~Pl~~ih~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~i~LY~rrVfI~d  238 (594)
                      .+|||+|+|++||+|||.+|||+++++|++||+|+|+++|||++|+||||||+.+|+++|+....++||+||||||||+|
T Consensus         2 tkpiW~r~~~eit~eeY~~FYk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~~~~~~ikLY~~rVfI~d   81 (256)
T d1usua_           2 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFESKKKKNNIKLYVRRVFITD   81 (256)
T ss_dssp             CCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC----CCEEEEETTEEEES
T ss_pred             CCCCccCCchhCCHHHHHHHHHhhcCCccCCceeEEeeeeeeEEEEEEEEecccCcchhhhhhhhcCCeEEEEEeeeecc
Confidence            57999999999999999999999999999999999999999999999999999999999976556789999999999999


Q ss_pred             ccccccccccccceeeeeCCCCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhhHhhccccCC
Q 007669          239 NCEELIPEYLGFIKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYDAFSKNLKLGIHED  318 (594)
Q Consensus       239 ~~~~lLP~wl~FvrGVVDS~dLpLNvSRE~LQ~~~~l~~I~~~i~kkvl~~L~~la~d~e~y~~f~~~~~~~lK~G~~eD  318 (594)
                      +|++|||+||+||||||||+|||||||||+||+|++|++|++.|++||+++|+++++|+++|++||++||.+||+||++|
T Consensus        82 ~~~~llP~~L~FvkGVVDS~DlpLNVSRE~LQ~~~~l~kI~~~i~kkv~~~L~~~~~d~eky~~fw~~fg~~lK~G~~~D  161 (256)
T d1usua_          82 EAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHED  161 (256)
T ss_dssp             CCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             chhhHHHHHHHHhhhccccccCCcccchhhhcccHHHHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHhHHHhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             hhhHHHHhchhcccccCCCCceecHHHHHHhhccCCceEEEEeCCcHHHHhcChhHHHHHHcCceEEeecCCccHHHHHh
Q 007669          319 SQNRAKLADLLRYHSTKSSEEFTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYEVLYMVDAIDEYAVGQ  398 (594)
Q Consensus       319 ~~~~e~l~~LLrf~ss~~~~~~~sL~eYv~rm~~~Q~~IYY~~~~~~~~~~~sp~le~~~~~g~eVL~l~dpiDE~~l~~  398 (594)
                      ..|++++++||||+||.+.++++||+||++||+++|+.|||++|++++++++|||+|+|+++|+|||||+|||||++|++
T Consensus       162 ~~~~e~l~~ll~f~ss~s~~e~~SL~eYvermke~Qk~IyYi~~~s~~~~~~sP~lE~~k~kg~EVL~l~dpiDe~~i~~  241 (256)
T d1usua_         162 TQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQ  241 (256)
T ss_dssp             TTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhccCCCcceeeHHHHHhhccccccceEEEecCCHHHHHcCHHHHHHHHCCCEEEEecCchHHHHHHH
Confidence            99999999999999998777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCceeEecccc
Q 007669          399 LKEYEGKKLVSATKE  413 (594)
Q Consensus       399 L~~~~~~~f~~V~~~  413 (594)
                      |++|+|++|+||+++
T Consensus       242 l~e~~~kkf~sV~ke  256 (256)
T d1usua_         242 LKEFEGKTLVDITKD  256 (256)
T ss_dssp             HCEETTEEEEETTCC
T ss_pred             HHHhCCCceeecCCC
Confidence            999999999999874
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure