Citrus Sinensis ID: 007677

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590---
Protein Sequence
MSESTSLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKAGETKTTKHQWKSKLFNGSNLAIPLTSSCSTNV
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccHHHHHcHHccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHcccHHHHHHHHHHcccHHcccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHccccccccccHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHccccccHHHHHHHcccHHHHHHHcccccHHHHHHHHHccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccHcccccccHHHHHHHcccHHHHHHHHHcccccccHccccccccHEHEHccccHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEEcccccccccHHHHHHHcccHHHHHHHHcHHHHHHHHHccHHHHHHHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccHHHccccccccEEcccccccccc
Coil and Loop (DISEMBL)
MSESTSLSKQLKEdkrkesdeqlpaETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMkgnegiatlpdndgmlPIVRAASLGRTEVVEFLYRETknslkdddCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKnlgdkdrkNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYpdlmwkadkkdnyTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHlagelapqhrlnvvsgSALQMQRELLWFKAvkdvvppklrdaknnkgltpkalFSKEHEELKRNgetwmkdtASSCMIVATLIATIVFAAaitvpggnkedtglpffrqkasfKIFAVSNVISLVASSVSIVNFLSivapryaeeDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRStyashypipkgktglfhkagetkttkhqwksklfngsnlaipltsscstnv
Flexible Loop (DISEMBL)
msestslskqlkedkrkesdeqlpaetitRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEgiatlpdndgmLPIVRAASLGRTEVVEFLYRetknslkdddCIELLVQLIETGLYAVALQLLHDHRYLATkraknketalhvlarknlgdkdrknKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKdvvppklrdaknnkgltpkalfskeHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYAShypipkgktglfhKAGETKTTKhqwksklfngsnlaipltsscstnv
Low Complexity Region (SEG)
MSESTSLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMivatliativfaaaitvPGGNKEDTGLPFFRQKASFKIFavsnvislvassvsivnFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKAGETKTTKHQWKSKLFNGSNLAIPLTSSCSTNV
Disordered region (IsUnstruct)
***************************ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLA***************TLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVP******************************TWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKAGE****KHQWKSKLFNG**L************
Disordered Region (DISOPRED)
***************************ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPK********************TASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHY***************************FNGSNLAIPLTSSCS***
Disordered Region (DISEMBL)
*********************QLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKAGETKTTKHQWKSKLFNGSNLAIPL********
Disordered Region (DISPRO)
********KQLKEDKRK*SDEQLPA**ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKA***************NGSNLA*P*T*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSESTSLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKAGETKTTKHQWKSKLFNGSNLAIPLTSSCSTNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	593	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.715	0.718	0.261	2e-18
Q502K3	1071	Serine/threonine-protein	no	no	0.419	0.232	0.252	2e-06
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.743	0.841	0.216	3e-06
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.473	0.528	0.233	2e-05
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.490	0.246	0.233	3e-05
Q5U312	978	Ankycorbin OS=Rattus norv	yes	no	0.155	0.094	0.35	5e-05
P17221	656	Sex-determining protein f	no	no	0.232	0.210	0.298	6e-05
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.433	0.065	0.235	0.0001
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.364	0.049	0.256	0.0001
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.364	0.110	0.252	0.0002

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 138/528 (26%), Positives = 215/528 (40%), Gaps = 104/528 (19%)

Query: 33  KLYRAALNGDWA----VAKDIYDKYEG------------EIGVEITNH----GKTALHVA 72
           +L+ AA  GD A    + KDI  + EG            EI   I N     G+TAL  A
Sbjct: 77  ELHLAAQRGDLAAVQQILKDINSQMEGILSGEEFDAEVAEIRASIVNEVNELGETALFTA 136

Query: 73  AEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDN 132
           A+   +D VK+LLK  S E +AK+N+ G   +  A       +V+  +  +  ++     
Sbjct: 137 ADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGP 196

Query: 133 DGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYL 192
               P+V AA  G TEVV  L  +  N                                L
Sbjct: 197 SNATPLVSAAMRGHTEVVNQLLSKAGN-------------------------------LL 225

Query: 193 ATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVI--LLSK--QEIWELIEQP 248
              R+ NK  ALH+ AR+                     EVI  LLSK  Q    + ++ 
Sbjct: 226 EISRSNNK-NALHLAARQG------------------HVEVIKALLSKDPQLARRIDKKG 266

Query: 249 RELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI 308
           +  +H A    + + + +L+   P ++ + DK  N T  H+A + +  ++ + +  + P 
Sbjct: 267 QTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCN-TALHVATRKKRAEIVELLLSL-PD 324

Query: 309 ADLMVDCTDEKGNNILHLAGELAPQH----------RLNVVSGSALQMQRELL--WFKAV 356
            +      D K    L +A  L              R   +  + L   R+ L      +
Sbjct: 325 TNANTLTRDHK--TALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQI 382

Query: 357 KDVVPPKLRDAK-NNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAA 415
           K+ V  +L   K  NK +      SKE  +L R G   + +  +S  +VA L AT+ FAA
Sbjct: 383 KNDVHIQLEQTKRTNKNVHN---ISKELRKLHREG---INNATNSVTVVAVLFATVAFAA 436

Query: 416 AITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRL 475
             TVPGG+  D G      +ASFKIF + N ++L  S   +V  +++V      E  +  
Sbjct: 437 IFTVPGGDNND-GSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVE 495

Query: 476 LPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSM 523
           +  KL      +++A     V F A+SYIV    + W A L TV+  +
Sbjct: 496 VINKL------MWLASMCTSVAFLASSYIVVGRKNEWAAELVTVVGGV 537

Arabidopsis thaliana (taxid: 3702)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES----VELVKA 118
           N G+T LH AA    I+ +  LL   S  D+ K++K G T + YA A+      V LV A
Sbjct: 421 NFGRTCLHAAASGGNIECLNLLLS--SGADMNKKDKFGRTPLHYAAANGRYQCVVVLVGA 478

Query: 119 TMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDD-----CIELLVQ- 172
             + NE      D  G  P+  +A+       +  +  T  + +D +     C+E L+  
Sbjct: 479 GAEVNE-----RDRSGCTPLHYSAASTAFCRTDRPHASTHQNQEDGEKESFLCVEHLLDN 533

Query: 173 -----LIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA--ETL 225
                L  T  Y+          Y A    K     L  +    LGDK+     +     
Sbjct: 534 GADPCLCNTKGYSAV-------HYAAAHGNKQNLELLLEMCFNTLGDKESNGSISPLHLA 586

Query: 226 VES-LWEEVILLSKQEIWELIEQP--RELIHDAADRGNVQFLSILIREYPDLMWKADKKD 282
           VES  WE V +L +  +   +  P  R +++ A+ RG+ + + +L+ +    +  A+ + 
Sbjct: 587 VESGHWECVTVLIESGVCVDVCDPVGRSVLYLASQRGHSRCVELLLSQSASCLL-AEHRS 645

Query: 283 NYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
            +   H+A  N   +  + +   +  ADL V+ TD +G   L LA
Sbjct: 646 KWGPLHVAAANGHSECLRMLLCSEGGADL-VNVTDAEGQTPLMLA 689

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 119/549 (21%), Positives = 222/549 (40%), Gaps = 108/549 (19%)

Query: 17  KESDEQLPAETITRR--LKLYRAALNGDWAVAKDIYDKYEG----EIGVEITNHGKTALH 70
           KE  + +  +   RR    L+ A   G   +  ++  +++G    E+  E    G+TAL+
Sbjct: 2   KEIKKTMTKQMTARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALY 61

Query: 71  VAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLP 130
           VAAE    D VK L+K   +     + K G  A   A  + +++++   ++ N  ++   
Sbjct: 62  VAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTF 121

Query: 131 DNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHR 190
           D+     +  AAS G  E+V FL          D  ++L                     
Sbjct: 122 DSSKTTALHTAASQGHGEIVCFLL---------DKGVDL--------------------- 151

Query: 191 YLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRE 250
             A     N +TALH  AR               +V+ L E+   +    +  + ++ + 
Sbjct: 152 --AAIARSNGKTALHSAARNG----------HTVIVKKLIEKKAGM----VTRVDKKGQT 195

Query: 251 LIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD 310
            +H A    N + + +L+     L+  AD K N T  HIAV+    ++ + +     ++ 
Sbjct: 196 ALHMAVKGQNTEIVDVLMEADGSLINSADNKGN-TPLHIAVRKNRAEIVQTVLKYCEVSR 254

Query: 311 LMVDCTDEKGNNILHLAG--ELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPP----KL 364
           + V+ + E   +I    G  E+ P     ++    +Q  R +   K  + V P     KL
Sbjct: 255 VAVNKSGETALDIAEKTGLHEIVP-----LLQKIGMQNARSI---KPAEKVEPSGSSRKL 306

Query: 365 RDAKNNKGLTPKALFSKEHEELKRNGET-----------------WMKDTASSCMIVATL 407
           ++  +  G        + H +L++ G T                  + +  +S  +VA L
Sbjct: 307 KETVSEIG-------HEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAIL 359

Query: 408 IATIVFAAAITVPGGNKED-----TGLPFFRQKAS----FKIFAVSNVISLVAS-SVSIV 457
           IAT+ FAA   VPG   +D      G      +A+    F IF V +  +L  S +V +V
Sbjct: 360 IATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVV 419

Query: 458 NFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILA 517
               +V  R A++  + ++  KL      +++A   + V F + S++V  +    +A+  
Sbjct: 420 QTSVVVIERRAKKQMMAII-NKL------MWMACIMISVAFVSLSFVVVGEKEKPLAVGV 472

Query: 518 TVISSMPVI 526
           T I ++ ++
Sbjct: 473 TAIGALIMV 481

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 144/360 (40%), Gaps = 79/360 (21%)

Query: 252 IHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNR----LEDLFKFIYDIKP 307
           +H A   G ++ +  LI +   ++   DKK   T  H+AVK R    +E++ +  Y I  
Sbjct: 166 LHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQ-TALHMAVKGRSLEVVEEILQADYTI-- 222

Query: 308 IADLMVDCTDEKGNNILHLAGELA-PQH----------RLNVV----------------S 340
                ++  D KGN  LH+A   A PQ            +N +                S
Sbjct: 223 -----LNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYS 277

Query: 341 GSALQMQRELL------------------WFKAVKD----VVPPKLRDAKNNKGLTPKAL 378
            SAL++   L+                    +AV D    V    L++ K N+ ++    
Sbjct: 278 ESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSG--- 334

Query: 379 FSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPG---GNKEDTGLPFFRQK 435
            +KE  +L R     +++T +S  +VA L A+I F A   +PG         G      +
Sbjct: 335 IAKELRKLHREA---VQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGR 391

Query: 436 ASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMM 495
             F++F + N  SL  S   +V  +++VA     +  +  +  KL      ++ A A   
Sbjct: 392 TGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL------MWAACACTF 445

Query: 496 VVFSATSYIVFEDGSLWIAILATVISSMPVIL--FVKQHFRFFYDVLRSTYASHYPIPKG 553
             F A ++ V   G+ W+AI  T++ + P+++       +  F    RS   S   I +G
Sbjct: 446 GAFLAIAFAVVGKGNSWMAITITLLGA-PILVGTLASMCYFVFRQRFRSGNDSQRRIRRG 504

Arabidopsis thaliana (taxid: 3702)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 51.2 bits (121), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 143/360 (39%), Gaps = 69/360 (19%)

Query: 32  LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS-- 89
           + L+ AA NG+  +AK +  K   ++  + T++G+T LH A ++  +  VK L++  +  
Sbjct: 640 ISLHCAAKNGNLDLAK-LLAKNGADVNAK-TDNGETVLHYAVKSGNLHLVKWLIENQANI 697

Query: 90  -----------------------------AEDLAKQNKIGCTAVFYAVASESVELVKATM 120
                                          D+  +   G TA+ YAV   +++LV   +
Sbjct: 698 HAKTDNGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNLDLVSLLI 757

Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL--YRETKNSLKDDDCIELLVQLIETGL 178
                +     N G   +  A   G  ++V  L  Y    N+ K D+   +L   +E+G 
Sbjct: 758 SHGADVNA-KTNSGETILYSAVDYGSPDLVYLLIAYGADVNA-KTDNGETVLHYAVESGN 815

Query: 179 YAVALQLLHDHRYLATKRAKNKETALHVLAR-----------KNLGDKDRKNKEAETLVE 227
             +   L+H+          N +T LH  A+           KN  D   K    ET++ 
Sbjct: 816 LDLVSLLIHN-----GANVNNAKTILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILH 870

Query: 228 SLWEEV-------ILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADK 280
              E         ++ +K +I         ++H AA  GN+  ++ LI+   D+  K + 
Sbjct: 871 FAAESGNLNLVNWLIKNKADIHAKTNSGETILHFAAKSGNLNLVNWLIKNKADIHAKTNS 930

Query: 281 KDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS 340
            +  TI H A K+   +L  ++  IK  AD  +      G  ILH A E      LN+VS
Sbjct: 931 GE--TILHFAAKSGNLNLVNWL--IKNKAD--IHAKTNSGETILHFAAESG---NLNLVS 981

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 58  GVEIT---NHGKTALHVAAEANRIDFVKKLLKRMS-AEDLAKQNKIGCTAVFYAVASESV 113
           GV++T   + G +ALH+AA+    +++KKLL+  S AE +   + +G TA+ YA A  S+
Sbjct: 76  GVDVTAQDSSGHSALHIAAKNGHPEYIKKLLQYKSPAESV---DNLGKTALHYAAAQGSL 132

Query: 114 ELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           + V+   +    I  L D DG +P++ A   G +E   FL
Sbjct: 133 QAVQVLCEHKSPI-NLKDLDGNIPLLVAIQNGHSEACHFL 171

Rattus norvegicus (taxid: 10116)

>sp|P17221|FEM1_CAEEL Sex-determining protein fem-1 OS=Caenorhabditis elegans GN=fem-1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)

Query: 27  TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           T TR   L  A  +G   + K + +K  G        HG T L +A+  N++  V++LLK
Sbjct: 120 TNTRSTPLRGACYDGHLDIVKYLLEK--GADPHIPNRHGHTCLMIASYRNKVGIVEELLK 177

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR 146
             +  D+ K+ + G TA+  A  S +VE+VK  +K   G   + D  G+ P++ AA  G 
Sbjct: 178 --TGIDVNKKTERGNTALHDAAESGNVEVVKILLK--HGSVLMKDIQGVDPLMGAALSGF 233

Query: 147 TEVVEFLYRETKNSLKDDDCIELL 170
            +V+  L  +  + +   D ++LL
Sbjct: 234 LDVLNVLADQMPSGIHKRDALKLL 257

Sex-determining protein; essential for the adoption of the male sexual fate in all tissues. Substrate recognition subunit of the cullin-RING-based CBC(fem-1) (Cul2-ElonginB-ElonginC) E3 ubiquitin-protein ligase complex which mediates in association with cofactors fem-2 and fem-3 the ubiquitination and subsequent proteasomal degradation of tra-1.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 131/310 (42%), Gaps = 53/310 (17%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
           T  G TALH+A+ A + + VK L+K  +  ++  Q++ G T ++ A     +++VK  ++
Sbjct: 94  TKKGNTALHIASLAGQAEVVKVLVKEGA--NINAQSQNGFTPLYMAAQENHIDVVKYLLE 151

Query: 122 --GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR-ETKNSLKDDDCIELLVQLIETGL 178
              N+  AT    DG  P+  A   G  + V  L   +TK  ++      L +   +   
Sbjct: 152 NGANQSTAT---EDGFTPLAVALQQGHNQAVAILLENDTKGKVR---LPALHIAARKDDT 205

Query: 179 YAVALQLLHDH------RYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE 232
            + AL L +DH      + +  +  ++  T LH+ A          N    TL+ +    
Sbjct: 206 KSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYG-------NVNVATLLLNRGAA 258

Query: 233 VILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK--DNYTIFHIA 290
           V   ++  I  L        H A+ RGN   + +L+    D   + D K  D  T  H A
Sbjct: 259 VDFTARNGITPL--------HVASKRGNTNMVKLLL----DRGGQIDAKTRDGLTPLHCA 306

Query: 291 VKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQREL 350
            ++  + + + + + K  A L+    +  G + LH+A +           G  ++  + L
Sbjct: 307 ARSGHDQVVELLLERK--APLLARTKN--GLSPLHMAAQ-----------GDHVECVKHL 351

Query: 351 LWFKAVKDVV 360
           L +KA  D V
Sbjct: 352 LQYKAPVDDV 361

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 30/246 (12%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
           T  G TALH+A+ A + + VK L+   +  ++  Q++ G T ++ A     +E+VK  + 
Sbjct: 104 TKKGNTALHIASLAGQAEVVKVLV--TNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLD 161

Query: 122 GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR-ETKNSLKDDDCIELLVQLIETGLYA 180
            N    +L   DG  P+  A   G  +VV  L   +TK  ++      L +   +    A
Sbjct: 162 -NGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVR---LPALHIAARKDDTKA 217

Query: 181 VALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE 240
            AL L +D+   A   +K+  T LH+ A          N    TL+ +    V   ++ +
Sbjct: 218 AALLLQNDNN--ADVESKSGFTPLHIAAHYG-------NINVATLLLNRAAAVDFTARND 268

Query: 241 IWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK--DNYTIFHIAVKNRLEDL 298
           I  L        H A+ RGN   + +L+    D   K D K  D  T  H   ++  E +
Sbjct: 269 ITPL--------HVASKRGNANMVKLLL----DRGAKIDAKTRDGLTPLHCGARSGHEQV 316

Query: 299 FKFIYD 304
            + + D
Sbjct: 317 VEMLLD 322

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 30/246 (12%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
           T  G TALH+A+ A + + VK L+   +  ++  Q++ G T ++ A     +E+V+  + 
Sbjct: 87  TKKGNTALHIASLAGQAEVVKVLV--TNGANVNAQSQNGFTPLYMAAQENHLEVVRFLLD 144

Query: 122 GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR-ETKNSLKDDDCIELLVQLIETGLYA 180
            N    +L   DG  P+  A   G  +VV  L   +TK  ++      L +   +    A
Sbjct: 145 -NGASQSLATEDGFTPLAVALQQGHDQVVSLLLENDTKGKVR---LPALHIAARKDDTKA 200

Query: 181 VALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE 240
            AL L +D    A   +K+  T LH+ A          N    TL+ +    V   ++ +
Sbjct: 201 AALLLQNDTN--ADVESKSGFTPLHIAAHYG-------NINVATLLLNRAAAVDFTARND 251

Query: 241 IWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK--DNYTIFHIAVKNRLEDL 298
           I  L        H A+ RGN   + +L+    D   K D K  D  T  H   ++  E +
Sbjct: 252 ITPL--------HVASKRGNANMVKLLL----DRGAKIDAKTRDGLTPLHCGARSGHEQV 299

Query: 299 FKFIYD 304
            + + D
Sbjct: 300 VEMLLD 305

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
224120488	610	predicted protein [Populus trichocarpa]	0.893	0.868	0.457	1e-129
359472754	789	PREDICTED: ankyrin repeat-containing pro	0.863	0.648	0.435	1e-120
225425076	563	PREDICTED: ankyrin repeat-containing pro	0.853	0.898	0.442	1e-119
359473665	602	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.910	0.897	0.434	1e-118
359483665	762	PREDICTED: ankyrin repeat-containing pro	0.863	0.671	0.424	1e-118
297737987	1855	unnamed protein product [Vitis vinifera]	0.853	0.272	0.440	1e-117
224136692	743	predicted protein [Populus trichocarpa]	0.873	0.697	0.424	1e-116
449454911	650	PREDICTED: ankyrin repeat-containing pro	0.897	0.818	0.423	1e-113
449454921	1316	PREDICTED: uncharacterized protein LOC10	0.919	0.414	0.387	1e-110
449515682	642	PREDICTED: uncharacterized LOC101218503	0.919	0.848	0.389	1e-110

>gi|224120488|ref|XP_002331060.1| predicted protein [Populus trichocarpa] gi|222872990|gb|EEF10121.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 255/557 (45%), Positives = 346/557 (62%), Gaps = 27/557 (4%)

Query: 30  RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS 89
           R L+LY+AAL+GDW  A+ IY    GE+   IT  G+TALH+AA A    FVK+L+  MS
Sbjct: 48  RHLQLYQAALSGDWDTAEGIYKLCPGEVNARITKRGETALHIAAAAEHTHFVKQLVGMMS 107

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEV 149
            E LA ++  G TA  +A  S    L K  M     +A       +LPI  A  LG   +
Sbjct: 108 IEALAYRSSAGNTAFCFAAISGVEALAKVMMDKKPDLAMTRGRGNLLPIYMATLLGHRGM 167

Query: 150 VEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLAR 209
           V +LY ETK  L D D I+LLV LI + +Y VA ++L +HR LA  R +++ TALH  ++
Sbjct: 168 VSYLYDETKEQLTDGDRIKLLVALINSDIYDVAWKMLKEHRGLAYARDEHQLTALHAFSQ 227

Query: 210 K-----NLGD--------------------KDRKNKEAETLVESLWEEVILLSKQEIWEL 244
           K     N+ D                    K   +K+A  L++ LWE+V+LL    I   
Sbjct: 228 KSCMPSNVVDQSPPGFWNKCLNPCFKLAQMKKLMHKQALDLIQYLWEQVVLLDDSTISSQ 287

Query: 245 IEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD 304
           I +P  LI  AA+RGN+  L+ILIR YP+L++K D+ + Y+IFHIA+ NR ED+ K IY 
Sbjct: 288 IGKPWPLIFTAAERGNLDLLTILIRLYPELIFKVDQ-NTYSIFHIAILNRHEDILKMIYQ 346

Query: 305 IKPIADLMVDCTDEKGNNILHLAGE-LAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPK 363
           I  I ++M    D +GNN+LHLA + L    RLN + G+ALQ+QRELLWF+ VK VV P+
Sbjct: 347 IGSIKNVMTIYKDREGNNMLHLAAKVLESPSRLNAIPGAALQLQRELLWFEEVKKVVQPR 406

Query: 364 LRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGN 423
             + KN  G TP ALF ++H +L + GE WM+DTA SCM+VATLIAT+VFAAA TVPGGN
Sbjct: 407 HIEEKNFHGKTPGALFIEQHRDLMKEGEQWMRDTADSCMLVATLIATVVFAAAFTVPGGN 466

Query: 424 KEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVG 483
            +D G P F ++ +FK FA+S+ ISLV S+ S++ FLS    RYAE++FL  LP +L++G
Sbjct: 467 FQDKGTPVFLKEIAFKFFAISDAISLVTSASSLLTFLSTRTSRYAEQNFLWSLPNRLIIG 526

Query: 484 FATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRST 543
             TLF++I AMMV F AT ++VF +  L  +I   V++S+PVI F+ QHFR F D++ ST
Sbjct: 527 LTTLFISIGAMMVAFMATFFLVFGNKLLPYSIPIAVVASLPVIFFIWQHFRLFVDMIHST 586

Query: 544 YASHYPIPKGKTGLFHK 560
           Y S       K+ LF K
Sbjct: 587 YTSRSLFKPNKSPLFSK 603

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/539 (43%), Positives = 334/539 (61%), Gaps = 27/539 (5%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
           L  AALNGDW  AK   +     +   IT   +TALH+AA A    FV++L+K M  +DL
Sbjct: 178 LCLAALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDL 237

Query: 94  AKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           A QNK+G TA+ +A AS    + +  +  N  +  +  + G+ P+  AA +G  ++V +L
Sbjct: 238 ALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYL 297

Query: 154 YRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL 212
           Y  T+ ++L  +D I LLV  I   L+ VAL +LH+   LA  R  N +TALHVLARK L
Sbjct: 298 YSVTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGDTALHVLARKPL 357

Query: 213 G------------------------DKDRKNKEAETLVESLWEEVILLSKQ-EIWELIEQ 247
                                    DK   + +A  LV+ LW++++ L    +I ELI  
Sbjct: 358 AFYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRT 417

Query: 248 PRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKP 307
           P  L+  AA+ G V+F+++LIR YPDL+WK + +   TIFH+AV +R E +F  IY+I  
Sbjct: 418 PSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQ-TIFHVAVAHRQEKIFNLIYEIGA 476

Query: 308 IADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDA 367
             D +    DEK NN+LHLAG+LAP +RL + SG+A Q+QREL WFK V+ ++ P   + 
Sbjct: 477 HKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEM 536

Query: 368 KNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDT 427
           KN +G TP+ LF++EH++L R GE WMKDTASSCM+VATLIAT++FAAA +VPGGN +DT
Sbjct: 537 KNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDT 596

Query: 428 GLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATL 487
           G P F  K SF +FA+S+ ++L +S+ SI+ FLSI+  RYAEEDFL  LP +L++G ATL
Sbjct: 597 GRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATL 656

Query: 488 FVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYAS 546
           F+++A MM+ F AT +IV     +W+A    +++ +PV LF    F  F D++   Y S
Sbjct: 657 FISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRS 715

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/536 (44%), Positives = 329/536 (61%), Gaps = 30/536 (5%)

Query: 28  ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR 87
           +T  + LY AA+ GDW  A+ I+  +   + + IT    T LH+AA A  + FV++++K 
Sbjct: 53  LTVCIPLYGAAMKGDWKTAEGIFKMFPPAVRMTITQGRDTTLHIAAAAKHVQFVEEMVKM 112

Query: 88  MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT 147
           M  +DL  QNK   TA+ +A AS  V + +  +K NE +  +    GM+P+  AA LG +
Sbjct: 113 MEPKDLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMAALLGHS 172

Query: 148 EVVEFLYRETKNS-LKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHV 206
           E+V +LY +T +  L   D + LL   I T LY VAL +LH H  LA +R +N ETALH+
Sbjct: 173 EMVRYLYNKTVHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDENDETALHL 232

Query: 207 LARK----NLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ 262
           LARK    + GD+             +W              I  P  L+  AA+ GN  
Sbjct: 233 LARKPSAFSGGDQLH-----------MWNT-----------FITSPLLLV--AAELGNTV 268

Query: 263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNN 322
           FL+ L+  YPDL+W+AD  DN TIFHIAV +R E +F  IY+I  + DL+V   D+  NN
Sbjct: 269 FLTELVGSYPDLIWEADN-DNRTIFHIAVLHRRESIFNLIYEIGSMKDLIVPYKDDNDNN 327

Query: 323 ILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKE 382
           +LHLAG  AP  + N+VSG+ALQMQRELLWFK V+ ++ P  R+ KN  G TP+ LF+KE
Sbjct: 328 MLHLAGRKAPLPQRNIVSGAALQMQRELLWFKEVEKIMLPTYRERKNKDGKTPRDLFTKE 387

Query: 383 HEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFA 442
           H+ L ++GE WM+ TA+  M+VATLIAT+VFAAA TVPGG+ +DTG+P   +K SF IFA
Sbjct: 388 HKNLMKDGEKWMRGTAAQSMLVATLIATVVFAAAFTVPGGSNQDTGIPILLRKKSFMIFA 447

Query: 443 VSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATS 502
           VS+ I+L +SS SI+ FLSI+  RYAE+DFL  LP++L+ G  TLFV+I +MMV F+ T 
Sbjct: 448 VSDAIALFSSSTSILVFLSILTSRYAEDDFLESLPSRLMFGLITLFVSIISMMVTFTITF 507

Query: 503 YIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLF 558
           ++VF  G  W  +L  V + +PV L+    +    D+ RSTY S +     K  L+
Sbjct: 508 FLVFGHGFAWAPMLIAVSACVPVTLYFSLQYPLLADIFRSTYGSRFLFRPSKRMLY 563

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473665|ref|XP_003631341.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 251/578 (43%), Positives = 352/578 (60%), Gaps = 38/578 (6%)

Query: 5   TSLSKQLKEDKRKESDEQL-PAETITRR--------LKLYRAALNGDWAVAKDIYDKYEG 55
           +SL++   E +   S EQ+ P + I+          + LYRAA+ GDW  AK I++ +  
Sbjct: 15  SSLAQDGHEIETGTSPEQMSPVDLISGDRDLYLAVCIPLYRAAMKGDWKTAKGIFEMFPA 74

Query: 56  EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVEL 115
            +   IT  G T LH+AA A  + FV++++K M  EDL  +N+   TA ++A A+  V +
Sbjct: 75  AVRFTITPGGDTTLHIAAAAKHVYFVEEMVKIMEPEDLELKNQYSNTAFWFAAAAGIVGI 134

Query: 116 VKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN-SLKDDDCIELLVQLI 174
            KA +K NE +  +   D M P+  AA LG +E+V +LY +T +  L   D ++LL   I
Sbjct: 135 AKAMVKKNEILPMIRAYDEMTPLHVAALLGHSEMVWYLYNKTDHEQLTVSDWVKLLNACI 194

Query: 175 ETGLYAVALQLLHDHRYLATKRAKNKETALHVLARK-----------------------N 211
            T LY VAL +   H  LA +R  N ETALH+LARK                        
Sbjct: 195 STDLYDVALDVSSHHPTLAVERDGNGETALHLLARKPSAFSGGDQLHIWNTVINSISCKR 254

Query: 212 LGDKD--RKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIR 269
           + DK   R+NK  + LV+ LW++VI+    EI +LI  P  L+  AA+ GN  FL+ LI 
Sbjct: 255 VEDKKILRQNKSLK-LVKHLWQQVIVQPHSEILDLIRSPSPLLLVAAELGNTVFLTELIA 313

Query: 270 EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE 329
            YPDL+W+ D   N +IFHIAV +R E++F  IY+I  + DL+V   DE  NNILHLAG 
Sbjct: 314 IYPDLIWEVDDH-NRSIFHIAVLHRQENIFNLIYEIGSMKDLIVPNKDENDNNILHLAGR 372

Query: 330 LAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRN 389
           LAP  + N+V G+ALQMQRELLWF+ V+ +V P  R+ KN  G TP  LF+KEH++L + 
Sbjct: 373 LAPPRQRNIVVGAALQMQRELLWFREVEKMVLPSFRERKNRDGETPWDLFTKEHKDLMKE 432

Query: 390 GETWMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISL 449
           GE WM+ TA+  M+VATLIAT+VFAAA+TVPGG+ +DTG+P F +K    IFAVS+ I+L
Sbjct: 433 GEKWMRGTAAQSMLVATLIATVVFAAALTVPGGSNQDTGIPXFVEKEILHIFAVSDAIAL 492

Query: 450 VASSVSIVNFLSIV-APRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFED 508
             S  SI+ FLSIV   RYA++DFL LLP++L+ G  TLF++I +MMV F+AT +++F  
Sbjct: 493 FTSLTSILVFLSIVLTSRYADDDFLELLPSRLMFGLFTLFISIISMMVTFTATFFLLFSH 552

Query: 509 GSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYAS 546
           G  W  IL  V + + V L+     R +  ++R+TY S
Sbjct: 553 GVTWAPILVAVFAFLLVTLYFSMQCRLWAHIIRATYCS 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/544 (42%), Positives = 335/544 (61%), Gaps = 32/544 (5%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
           LY AAL+GDW VA+ I++     +   IT   +T LH+AA A  + FV+ L++ M+  DL
Sbjct: 208 LYLAALSGDWDVAERIFESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTPADL 267

Query: 94  AKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           A +NK+G TA+ +A  S   ++ +  +  N  +  +  ++G  P+  A  LG  E+V +L
Sbjct: 268 ALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGSEGATPLHMATLLGHREMVWYL 327

Query: 154 YRET-------KNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHV 206
           Y +T        N L D+D   LL+  I + L+ VAL+++  H  +AT R +N ETALH+
Sbjct: 328 YNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVALKIVQKHPKIATARGRNGETALHI 387

Query: 207 LARK--------NLG----------------DKDRKNKEAETLVESLWEEVILLSKQEIW 242
           LARK         LG                D+   + +A  LV+ LW EV+L+++ ++ 
Sbjct: 388 LARKPSAYQSGSQLGFLQRCIYAFPFIKVVYDQKLMHIQALELVKCLWSEVLLMNELQVG 447

Query: 243 ELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI 302
           ELI  P  L+  AA+ G V+FL  LI  YPDL+WK D +   +IFHIAV +R E +F  I
Sbjct: 448 ELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSR-SIFHIAVVHRQEKVFNLI 506

Query: 303 YDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPP 362
           ++I  + DL+    DE  NN+LHLAG+LAP  RL   SG+ALQ++REL WFK V+ +V P
Sbjct: 507 HEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAALQLRRELHWFKEVEKIVQP 566

Query: 363 KLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGG 422
             R+ +N++G TP+ LF +EH+ L R GE WMKDTA+SCM+VATLIAT++FAA  TVPGG
Sbjct: 567 LYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLVATLIATVMFAAFFTVPGG 626

Query: 423 NKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLV 482
           +  +TG+P F ++ SF +FAVS+ +S V+S+ SI+ FLSI+  RYAEEDFL  LP +L +
Sbjct: 627 DNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFLSILTSRYAEEDFLHSLPNRLTI 686

Query: 483 GFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRS 542
           G  TLF+++A MM+ F AT ++V   G     I   +++ +PV LF    F  F D++  
Sbjct: 687 GLGTLFISVATMMIAFCATLFLVLGHGLHQAKIPIALVACIPVSLFALLQFPLFADMVSC 746

Query: 543 TYAS 546
           TY S
Sbjct: 747 TYGS 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/513 (44%), Positives = 329/513 (64%), Gaps = 7/513 (1%)

Query: 37  AALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ 96
           AALNGDW  AK   +     +   IT   +TALH+AA A    FV++L+K M  +DLA Q
Sbjct: 181 AALNGDWKSAKAFLESNPQAVRARITRRSETALHIAAGARHTRFVEELVKLMKPDDLALQ 240

Query: 97  NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRE 156
           NK+G TA+ +A AS    + +  +  N  +  +  + G+ P+  AA +G  ++V +LY  
Sbjct: 241 NKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAALVGHKDMVRYLYSV 300

Query: 157 TK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLAR-KNLGD 214
           T+ ++L  +D I LLV  I   L+ VAL +LH+   LA  R      ++HV+   K++ D
Sbjct: 301 TEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMAR---DGASIHVIPGFKSVYD 357

Query: 215 KDRKNKEAETLVESLWEEVILLSKQ-EIWELIEQPRELIHDAADRGNVQFLSILIREYPD 273
           K   + +A  LV+ LW++++ L    +I ELI  P  L+  AA+ G V+F+++LIR YPD
Sbjct: 358 KKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPD 417

Query: 274 LMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQ 333
           L+WK + +   TIFH+AV +R E +F  IY+I    D +    DEK NN+LHLAG+LAP 
Sbjct: 418 LIWKVNDQSQ-TIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPS 476

Query: 334 HRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETW 393
           +RL + SG+A Q+QREL WFK V+ ++ P   + KN +G TP+ LF++EH++L R GE W
Sbjct: 477 NRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKW 536

Query: 394 MKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASS 453
           MKDTASSCM+VATLIAT++FAAA +VPGGN +DTG P F  K SF +FA+S+ ++L +S+
Sbjct: 537 MKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSA 596

Query: 454 VSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWI 513
            SI+ FLSI+  RYAEEDFL  LP +L++G ATLF+++A MM+ F AT +IV     +W+
Sbjct: 597 TSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWV 656

Query: 514 AILATVISSMPVILFVKQHFRFFYDVLRSTYAS 546
           A    +++ +PV LF    F  F D++   Y S
Sbjct: 657 ANPMALVACVPVTLFPLLKFPLFIDMISHRYRS 689

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136692|ref|XP_002322392.1| predicted protein [Populus trichocarpa] gi|222869388|gb|EEF06519.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/544 (42%), Positives = 327/544 (60%), Gaps = 26/544 (4%)

Query: 28  ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR 87
           +T    LY+AA+ GDW  A + +  + G I V IT    T LH+AA A    FV++++K 
Sbjct: 189 LTLYAPLYQAAMKGDWEKADEFFKSHPGAINVRITKEMDTVLHIAAGAKHTKFVEEVVKS 248

Query: 88  MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT 147
           M+  DL  +NK   TA+ YA AS   ++ +  +  N  +  + +N G+ P+  AA  G  
Sbjct: 249 MTGTDLTLRNKYNNTALCYAAASGVTKIAEMMVSKNRNLPMMRNNRGVTPLYIAALFGHK 308

Query: 148 EVVEFLYRETKNS-LKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHV 206
           ++V +LY  T +  L  DD I LL+  I T L+ VAL ++     LA +R  N ETALHV
Sbjct: 309 DMVWYLYSVTSDEYLTRDDYIGLLIATISTDLFDVALSIIQHQPELAIQRDLNGETALHV 368

Query: 207 LARKN--------LG----------------DKDRKNKEAETLVESLWEEVILLSKQEIW 242
           LARK+        LG                DK   + +   LV+  WE+V+LL   +I 
Sbjct: 369 LARKSSAFASKSGLGFWHRFIYPFPGIKAVYDKKLMHTQVLELVKLSWEQVLLLDDCQIA 428

Query: 243 ELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI 302
           EL+  P + +  AA+ G V+F++ LIR YPDL+WK +++   +IFHIAV +R E +F  I
Sbjct: 429 ELLASPSQPLFVAAEFGIVEFITALIRSYPDLIWKVNEQSR-SIFHIAVAHRQEKIFSLI 487

Query: 303 YDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPP 362
            DI    D++    D    NILHLAG +AP+ +LNV+SG+ALQMQRELLWFK V+  V P
Sbjct: 488 NDIGAHKDMITAYKDINNANILHLAGMIAPRDKLNVISGAALQMQRELLWFKEVEKNVQP 547

Query: 363 KLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASSCMIVATLIATIVFAAAITVPGG 422
            L++ ++  G TP+ LF++EH  L + GE WMK+TASSCM++ATLI T++FAA  TVPGG
Sbjct: 548 SLKEMRDKNGRTPRMLFTEEHRGLVKEGEKWMKNTASSCMLLATLITTVMFAAIFTVPGG 607

Query: 423 NKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLV 482
           N    G P      SF +FAV++  +L +S  SI+ FLSI+  RYAEEDF+  LP +L+V
Sbjct: 608 NDNSKGTPLVLASTSFIVFAVADAFALFSSVTSILMFLSILTSRYAEEDFVESLPKRLVV 667

Query: 483 GFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRS 542
           G ATLF +IAAM+V F+AT  IV +    WI +  ++ SS+PV LF    F  F D++ S
Sbjct: 668 GLATLFCSIAAMLVAFAATFCIVLDHRLAWIVVPISLGSSVPVTLFAFLQFPLFVDMIHS 727

Query: 543 TYAS 546
           +Y +
Sbjct: 728 SYGA 731

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454911|ref|XP_004145197.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus] gi|449472070|ref|XP_004153487.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/564 (42%), Positives = 341/564 (60%), Gaps = 32/564 (5%)

Query: 12  KEDKRKESDEQLPAETITR-RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALH 70
           K+D R   DE +     +  +  L  +ALNGDW  A+ IY KYE +    IT +G+T LH
Sbjct: 56  KQDGRGCGDEMVKWMVKSALKTSLRHSALNGDWKTAEAIYQKYELKPRDPITRNGETILH 115

Query: 71  VAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLP 130
           ++A     DFVKKL+  MS ++L+ +NK G TA+ +A    S  + K  ++ NE +  + 
Sbjct: 116 ISAATQHKDFVKKLIGEMSQDELSLKNKNGHTALCFAAEEGSEIIAKLLVENNEKLPLIR 175

Query: 131 DNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDH 189
            ++ + P+  A S  R ++  +L   T  N L D +   LL+  I +  Y ++L++L ++
Sbjct: 176 GDEDITPLYIAVSYRREKMASYLLSVTDLNQLNDQEKTLLLIAAIHSDFYGISLEILRNN 235

Query: 190 RYLATKR--AKNKETALHVLARKN--------------------LGDKDRKNKEAETLVE 227
             LAT R    N ETALHVLARK                       +KD     A  LV 
Sbjct: 236 PKLATMRNGKNNDETALHVLARKQSEIFRSRREINIWKKCIGYGTCNKDDAKTLARQLVN 295

Query: 228 SLWEEVIL-LSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTI 286
           SLWE V+  L ++E  + I+ P  L+HDAA  GNV+FL +LIR YPD++W+ D  D  +I
Sbjct: 296 SLWEHVLRDLDEKETLDFIKHPTGLLHDAARAGNVEFLILLIRSYPDIVWEEDD-DKKSI 354

Query: 287 FHIAVKNRLEDLFKFIYDIKPIADLMVDC-TDEKGN-NILHLAGELAPQHRLNVVSGSAL 344
           FHIAV+NRLE++F  I++I    D      T  KGN N+LHLA +L   + LN VSG AL
Sbjct: 355 FHIAVENRLENVFNLIHEISGPRDFSTRYKTTTKGNYNMLHLAAKLPALNHLNRVSGPAL 414

Query: 345 QMQRELLWFKAVKDVVPPKLRDAKNNKG---LTPKALFSKEHEELKRNGETWMKDTASSC 401
           QMQRELLW+K V+ +V P  R+AK N G   LTP+ LF+KEH EL+++GE WMK+TA+SC
Sbjct: 415 QMQRELLWYKEVEKIVLPCQREAKCNDGSIQLTPRELFTKEHTELRKHGEEWMKNTANSC 474

Query: 402 MIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVASSVSIVNFLS 461
           M+VATLI T+VFAAA TVPGGN ++TG P  + K  F +F +S+ ++L++SS SI+ FLS
Sbjct: 475 MLVATLITTVVFAAAFTVPGGNDDETGDPTLQTKNWFVVFVISDAVALLSSSTSILMFLS 534

Query: 462 IVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGS-LWIAILATVI 520
           I+  RY E+DFLR LP+KLL G   LF++I  M+V FSAT ++++   S +W+ +    +
Sbjct: 535 ILTSRYREDDFLRSLPSKLLSGLVLLFISIVCMVVTFSATFFLLYRHPSNIWLPMTIAAM 594

Query: 521 SSMPVILFVKQHFRFFYDVLRSTY 544
           + +PV  F    F+   D   +TY
Sbjct: 595 AIIPVSCFWGLQFKLSIDTFHNTY 618

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454921|ref|XP_004145202.1| PREDICTED: uncharacterized protein LOC101216177 [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/591 (38%), Positives = 353/591 (59%), Gaps = 46/591 (7%)

Query: 13  EDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVA 72
           +D  + SD  L       R+ LY+ AL G+W   + + D+    +   IT + +T LH+A
Sbjct: 58  KDADEPSDHNLFQIGAATRIFLYQNALKGEWEYVELLLDESPNIVRSAITRNRETILHIA 117

Query: 73  AEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD- 131
           A A +I+FV KLL RMS +D+  QN+ G TA+ +A AS  V + +  ++ N  +  +   
Sbjct: 118 AGAKQIEFVVKLLNRMSDDDMILQNEFGNTALCFAAASGVVRIAELMVEKNPNLPLIRGF 177

Query: 132 NDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHR 190
           N+ + P+  A S   TE+V +L   T  N L   + IELL+  I++  Y ++L +L  + 
Sbjct: 178 NNAVTPLFIAVSYKCTEMVSYLLSVTDLNQLGKQEQIELLIATIQSDFYDISLWILQRYP 237

Query: 191 YLATKRAKNKETALHVLARKNLGDKDRKNKEAETL-----------VESLWEEVI----- 234
           YLA  R  N+ETALHV+ARK       K   + TL            ++L  E++     
Sbjct: 238 YLAIMRDTNEETALHVIARKPSAMDVTKQLSSWTLFLNSRIYRKPVTKTLAHELVVLLLT 297

Query: 235 ----LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIA 290
               +L ++++ + I+ P  L++DAA  GNV+FL +LIR+YPD++W+ D  D  +IFH+A
Sbjct: 298 NVLRILPEKKMLQFIKHPTRLLNDAACTGNVEFLIVLIRKYPDIIWE-DADDGKSIFHVA 356

Query: 291 VKNRLEDLFKFIYDIKPIADLMVDCTDEKGNN--ILHLAGELAPQHRLNVVSGSALQMQR 348
           ++NRLE++F  I +I  + +        KG N  ILHLAG LA  + LN VSG+ALQMQR
Sbjct: 357 IENRLENVFNLINEIGRLNEFTAKYRTFKGRNYNILHLAGHLATPNHLNRVSGAALQMQR 416

Query: 349 ELLWFKAVKDVVPPKLRDAKNN----------------KGLTPKALFSKEHEELKRNGET 392
           E+LWFK V+ +V P   +AK+N                  LTP+ LF++EH++L+++GE 
Sbjct: 417 EMLWFKEVEKIVLPSQLEAKSNVTSSQQLEAKFNYPNTPKLTPRQLFTQEHKDLRKDGEE 476

Query: 393 WMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVAS 452
           WMK TA+SCM+VATLI+T+VFAAA TVPGG+  + G P F+QK  F +FA+S+ ++L +S
Sbjct: 477 WMKHTANSCMLVATLISTVVFAAAFTVPGGSNNNEGTPVFQQKFWFTVFAMSDAVALFSS 536

Query: 453 SVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLW 512
           S SI+ F+SI+  RYAE+DF+  LP++LL G ATLF++I  M+V FSAT +I++   ++ 
Sbjct: 537 STSILMFMSILTSRYAEDDFMHSLPSRLLFGLATLFISIVCMVVAFSATFFILYHKANIC 596

Query: 513 IAILATVISSMPVILFVKQHFRFFYDVLRSTYAS-----HYPIPKGKTGLF 558
           I  + + ++ +PVI F     + + D+  +TY+S     H  +P   +  F
Sbjct: 597 IPTIVSAMAILPVICFCVLQCKLWADIFHNTYSSRKAHHHTKLPSSSSSTF 647

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515682|ref|XP_004164877.1| PREDICTED: uncharacterized LOC101218503 [Cucumis sativus]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 352/586 (60%), Gaps = 41/586 (6%)

Query: 13  EDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVA 72
           +D  + SD  L       R+ LY+ AL G+W   + + D+    +   IT + +T LH+A
Sbjct: 58  KDADEPSDHNLFQIGAATRIFLYQNALKGEWEYVELLLDESPNIVRSAITRNRETILHIA 117

Query: 73  AEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD- 131
           A A +I+FV KLL RMS +D+  QN+ G TA+ +A AS  V + +  ++ N  +  +   
Sbjct: 118 AGAKQIEFVVKLLNRMSDDDMILQNEFGNTALCFAAASGVVRIAELMVEKNPNLPLIRGF 177

Query: 132 NDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHR 190
           N+ + P+  A S   TE+V +L   T  N L   + IELL+  I++  Y ++L +L  + 
Sbjct: 178 NNAVTPLFIAVSYKCTEMVSYLLSVTDLNQLGKQEQIELLIATIQSDFYDISLWILQRYP 237

Query: 191 YLATKRAKNKETALHVLARKNLGDKDRKNKEAETL-----------VESLWEEVI----- 234
           YLA  R  N+ETALHV+ARK       K   + TL            ++L  E++     
Sbjct: 238 YLAIMRDTNEETALHVIARKPSAMDVTKQLSSWTLFLNSRIYRKPVTKTLAHELVVLLLT 297

Query: 235 ----LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIA 290
               +L ++++ + I+ P  L++DAA  GNV+FL +LIR+YPD++W+ D  D  +IFH+A
Sbjct: 298 NVLRILPEKKMLQFIKHPTRLLNDAACTGNVEFLIVLIRKYPDIIWE-DADDGKSIFHVA 356

Query: 291 VKNRLEDLFKFIYDIKPIADLMVDCTDEKGNN--ILHLAGELAPQHRLNVVSGSALQMQR 348
           ++NRLE++F  I +I  + +        KG N  ILHLAG LA  + LN VSG+ALQMQR
Sbjct: 357 IENRLENVFNLINEIGRLNEFTAKYRTFKGRNYNILHLAGHLATPNHLNRVSGAALQMQR 416

Query: 349 ELLWFKAVKDVVPPKLRDAKNN----------------KGLTPKALFSKEHEELKRNGET 392
           E+LWFK V+ +V P   +AK+N                  LTP+ LF++EH++L+++GE 
Sbjct: 417 EMLWFKEVEKIVLPSQLEAKSNVTSSQQLEAKFNYPNTPKLTPRQLFTQEHKDLRKDGEE 476

Query: 393 WMKDTASSCMIVATLIATIVFAAAITVPGGNKEDTGLPFFRQKASFKIFAVSNVISLVAS 452
           WMK TA+SCM+VATLI+T+VFAAA TVPGG+  + G P F+QK  F +FA+S+ ++L +S
Sbjct: 477 WMKHTANSCMLVATLISTVVFAAAFTVPGGSNNNEGTPVFQQKFWFTVFAMSDAVALFSS 536

Query: 453 SVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLW 512
           S SI+ F+SI+  RYAE+DF+  LP++LL G ATLF++I  M+V FSAT +I++   ++ 
Sbjct: 537 STSILMFMSILTSRYAEDDFMHSLPSRLLFGLATLFISIVCMVVAFSATFFILYHKANIC 596

Query: 513 IAILATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLF 558
           I  + + ++ +PVI F     + + D+  +TY+S +     +  LF
Sbjct: 597 IPTIVSAMAILPVICFCVLQCKLWADIFHNTYSSRFLFKPRRGKLF 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.876	0.905	0.329	2.3e-71
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.566	0.968	0.399	9.7e-64
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.532	0.505	0.341	1.3e-57
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.541	0.479	0.329	2e-57
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.559	0.550	0.287	2.1e-42
TAIR|locus:2165194	282	AT5G35830 [Arabidopsis thalian	0.300	0.631	0.308	4.6e-17
RGD|620156	843	Ank2 "ankyrin 2, neuronal" [Ra	0.401	0.282	0.285	2.6e-09
ZFIN|ZDB-GENE-060526-136	586	ankdd1b "ankyrin repeat and de	0.475	0.481	0.232	3.2e-09
UNIPROTKB|J9NTH2	2063	ANK2 "Uncharacterized protein"	0.401	0.115	0.285	7.8e-09
UNIPROTKB|F1M5N3	3838	Ank2 "Protein Ank2" [Rattus no	0.401	0.062	0.285	1.5e-08

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 181/550 (32%), Positives = 281/550 (51%)

Query:    21 EQLPAETITR---RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANR 77
             E   +E +T+   R  +Y+A L GDW  A  +  + E  +  +IT + + ALH+A  A  
Sbjct:    38 EDHTSEDVTKPHSRNLMYKAVLTGDWKTASTLISRKECNVVEQITGNSEIALHIAVAAKH 97

Query:    78 IDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLP 137
              DFV+ LL+ M   DL+ +NK G T + +A A   +E  +  +     +  + +   M P
Sbjct:    98 KDFVRNLLREMDPPDLSLKNKDGNTPLSFAAALGDIETAEMLINMIRDLPDISNEKTMTP 157

Query:   138 IVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKR 196
             I  AA  G  E+V++L+ +T    L D   + L   +I   +Y V   +      L    
Sbjct:   158 IHIAALYGHGEMVQYLFSKTSIKDLNDQQYLNLFHTMISADIYGVFADV--PLWMLERVD 215

Query:   197 AKNKETALHVLARKNLGDKDRKNKEAETLVE-SLWEEVILLSKQEIWELIEQPRELIHDA 255
                KE AL+  + K L    RK        + +L+++V        W        L+ DA
Sbjct:   216 LYRKELALYPNSNKALHLLARKTSAISHKSQLNLFQQVA-----SSW--------LLFDA 262

Query:   256 ADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDC 315
             A+ GNV+ L ILIR + DL+W  D  +N T+FH+A   R E++F  IY++  I DL+   
Sbjct:   263 AELGNVEILVILIRSHLDLLWIVDN-NNRTLFHVAALYRHENIFSLIYELGGIKDLIASY 321

Query:   316 TDEKGNN-ILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLT 374
              +++  + +LHL   L P +R  V SG+AL MQ+ELLWFKAVK++VP    + KN KG  
Sbjct:   322 KEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGEL 381

Query:   375 PKALFSKEHEELKRNGETWMKDTASSCMXXXXXXXXXXXXXXXXXPGGN-----KEDT-G 428
                +F+++HE L++ GE WMK+TA++CM                 PGGN     K +T G
Sbjct:   382 AHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLG 441

Query:   429 LPFFRQKASFKIFXXXXXXXXXXXXXXXXXFLSIVAPRYAEEDFLRLLPTKLLVGFATLF 488
              P FR++  F IF                 FLSI   RYAEEDF   LPTKL+ G + LF
Sbjct:   442 FPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALF 501

Query:   489 VAIAAMMVVFSATSYIV-FEDGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTYASH 547
             ++I +M++ F+ +  ++  E  SL + +L + ++S+  + F   +F  +++ LRS Y S 
Sbjct:   502 ISIISMILAFTFSMILIRVEKASLSL-VLISCLASLTALTFAYLYFHLWFNTLRSVYISM 560

Query:   548 YPIPKGKTGL 557
             +     K G+
Sbjct:   561 FLFLGRKRGI 570

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 137/343 (39%), Positives = 194/343 (56%)

Query:   222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK 281
             A  +VE LW  VI L  +EI + +     L+ DAA  GN++ L ILIR YPDL+W  D K
Sbjct:     5 AHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHK 64

Query:   282 DNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGN-NILHLAGELAPQHRLNVVS 340
              N ++FHIA  NR E +F  IY++  I DL+    +++ N N+LHL   L P +RL VVS
Sbjct:    65 -NQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQVVS 123

Query:   341 GSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASS 400
             G+ALQMQRE+LW+KAVK++VP      KN K      LF+KEH+ L++ GE WMK+TA++
Sbjct:   124 GAALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETATA 183

Query:   401 CMXXXXXXXXXXXXXXXXXPGGNK-----EDTGLPFFRQKASFKIFXXXXXXXXXXXXXX 455
             C+                 PGGN      +  G P FR++  F++F              
Sbjct:   184 CILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTS 243

Query:   456 XXXFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAI 515
                FLSI+  RYAE  F   LPTKL++G   LFV+I +M++ F+AT  ++ +    W  I
Sbjct:   244 IMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLI 303

Query:   516 LATVISSMPVILFVKQHFRFFYDVLRSTYASHYPIPKGKTGLF 558
             L   ++S   + FV  HF+ ++D LRS Y S +     K+GL+
Sbjct:   304 LLVYVASATALSFVVLHFQLWFDTLRSAYLSKFLFHGRKSGLY 346

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 111/325 (34%), Positives = 165/325 (50%)

Query:   221 EAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADK 280
             +A+ L++ + EE + L  +E  E ++   E +  A   GNV FL  +I+   +L+W    
Sbjct:   296 QAKKLLKGISEETLALGLKERSESVD---EALLFAVRYGNVDFLVEMIKNNSELLWSTGT 352

Query:   281 KDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS 340
                 T+F+ AV+ R E +F  +Y +     L +   D  GN++LHLAG   P ++L  V 
Sbjct:   353 S---TLFNTAVQVRQEKVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVV 409

Query:   341 GSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASS 400
              + LQMQREL WFK ++ +VP    +  N + LTP  +F KEHE ++   E WMKDTA S
Sbjct:   410 SATLQMQRELQWFKEMERIVPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMS 469

Query:   401 CMXXXXXXXXXXXXXXXXXPGGNKEDTG-LPFFRQKASFKIFXXXXXXXXXXXXXXXXXF 459
             C                  PGG  +++G  PF R +  F IF                 F
Sbjct:   470 CSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIF 529

Query:   460 LSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATV 519
             L I+  RYA +DFL  LP  ++ G +TLFV+IAAM+V FS+  + +F D   WI      
Sbjct:   530 LGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDP--WIVAPTIF 587

Query:   520 ISSMPVILFVKQHFRFFYDVLRSTY 544
              +  P +LFV   +    +++ STY
Sbjct:   588 FACFPALLFVMIQYPLLKELIFSTY 612

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 107/325 (32%), Positives = 168/325 (51%)

Query:   221 EAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADK 280
             +A+ L+  + EE + L  +E  E ++   E +  A   GNV FL  +IR   +L+W    
Sbjct:   335 QAKKLLLGISEETLALGLKERSETVD---EALLFAVRYGNVDFLVEMIRNNSELLWSTRT 391

Query:   281 KDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS 340
               + T+F +AV+ R E +F  +Y +     L++   D  GN +LHLAG  +P  +L+ V 
Sbjct:   392 SSSSTLFLLAVEFRQEKVFSLLYGLDDRKYLLLADKDCDGNGVLHLAGFPSPPSKLSSVV 451

Query:   341 GSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELKRNGETWMKDTASS 400
             G+ LQ+QREL WFK V+ + P   ++  N +  TP  +F+KEH+ L++  E WMKDTA S
Sbjct:   452 GAPLQLQRELQWFKEVERIAPEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMS 511

Query:   401 CMXXXXXXXXXXXXXXXXXPGGNKEDT-GLPFFRQKASFKIFXXXXXXXXXXXXXXXXXF 459
             C                  PGG  +++ G PF  +   F IF                 F
Sbjct:   512 CSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIF 571

Query:   460 LSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFEDGSLWIAILATV 519
             L I+  RY+ +DFL  LPTK++ G + LFV+IAAM++ FS+  + +      WI     +
Sbjct:   572 LGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTIL 631

Query:   520 ISSMPVILFVKQHFRFFYDVLRSTY 544
              + +P +LFV   +    +++ STY
Sbjct:   632 FACLPALLFVLLQYPLLKEMIFSTY 656

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 410 (149.4 bits), Expect = 2.1e-42, Sum P(2) = 2.1e-42
 Identities = 97/337 (28%), Positives = 166/337 (49%)

Query:   210 KNLGDKDRKNKEAETLVESLWEEVI-LLSKQEI-WELIEQPRELIHDAADRGNVQFLSIL 267
             K   D  +++ +A+ L++ +   +  +++K EI W+  E   E + +AA  GN  F   +
Sbjct:   256 KQTYDLKKRHSQAQKLLKQMCTSLRDIMAKNEIRWK--ETVYEALLEAAKSGNRDFFIEI 313

Query:   268 IREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
             I+    L+W  +      +F +AV+ + E +F  I+ +      ++   D+  NNILH+A
Sbjct:   314 IKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHIA 373

Query:   328 GELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELK 387
             G L+   +L+ +SG+AL+MQRE  WFK V+ +V  +    KN    TP+ +F   HE L+
Sbjct:   374 GRLSTPDQLSKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLR 433

Query:   388 RNGETWMKDTASSCMXXXXXXXXXXXXXXXXXPGGNKEDTGLPFFRQKASFKIFXXXXXX 447
             + GE WMK TA++C                  PGG    +G P       F+ F      
Sbjct:   434 KEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTL 493

Query:   448 XXXXXXXXXXXFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIVFE 507
                        FLSI+  RY+ +DF+  LP K+++G + LF++IA+M+V F  +      
Sbjct:   494 AFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSASMR 553

Query:   508 DGSLWIAILATVISSMPVILFVKQHFRFFYDVLRSTY 544
                  +  L   ++S P +LF+   +    +++ STY
Sbjct:   554 HKPALVYPLKP-LASFPSLLFLMLQYPLLKEMISSTY 589

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 4.6e-17, P = 4.6e-17
 Identities = 57/185 (30%), Positives = 95/185 (51%)

Query:    20 DEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRID 79
             D++L A+ +    +LY+AAL GDW  A  I  + +  I  +IT+  +T LH+A  A    
Sbjct:    81 DDKLRAKGV----QLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEG 136

Query:    80 FVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV 139
             FV+ LL  + + DLA +N  G TA+ +A AS  VE+ K  ++ N+ +  +       PI 
Sbjct:   137 FVRNLLGSLESNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIH 196

Query:   140 RAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAK 198
              AA  G  E+V++LY+ T+     D++ + L   +I   +Y  ++           +R K
Sbjct:   197 MAALFGHGEMVKYLYKNTRFREFNDEEFVNLFHAVISADIYVRSIHRCSSGD--VRERGK 254

Query:   199 NKETA 203
              K T+
Sbjct:   255 EKSTS 259

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|620156 Ank2 "ankyrin 2, neuronal" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 74/259 (28%), Positives = 119/259 (45%)

Query:    49 IYDKYEGEIGVEITN-HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107
             + +  +G I +   N +G  ALH+AA+   +  V++LL R S+ D A   K G TA+  A
Sbjct:    12 VVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSA--TKKGNTALHIA 69

Query:   108 VASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN--SLKDDD 165
               +   E+VK  +K    I     N G  P+  AA     +VV++L     N  +  +D 
Sbjct:    70 SLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQENHIDVVKYLLENGANQSTATEDG 128

Query:   166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL 225
                L V L +    AVA+ L +D     TK  K +  ALH+ ARK+    D K+  A  L
Sbjct:   129 FTPLAVALQQGHNQAVAILLEND-----TK-GKVRLPALHIAARKD----DTKS--AALL 176

Query:   226 VESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYT 285
             +++      + SK  +    E     +H AA  GNV   ++L+     + + A  ++  T
Sbjct:   177 LQND-HNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTA--RNGIT 233

Query:   286 IFHIAVKNRLEDLFKFIYD 304
               H+A K    ++ K + D
Sbjct:   234 PLHVASKRGNTNMVKLLLD 252

GO:0002027 "regulation of heart rate" evidence=ISO

GO:0003283 "atrial septum development" evidence=ISO

GO:0005200 "structural constituent of cytoskeleton" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006874 "cellular calcium ion homeostasis" evidence=ISO

GO:0007399 "nervous system development" evidence=IEP

GO:0008104 "protein localization" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0010881 "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion" evidence=ISO

GO:0010882 "regulation of cardiac muscle contraction by calcium ion signaling" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO

GO:0015459 "potassium channel regulator activity" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030674 "protein binding, bridging" evidence=ISO

GO:0030913 "paranodal junction assembly" evidence=IEP

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0033292 "T-tubule organization" evidence=ISO

GO:0033365 "protein localization to organelle" evidence=ISO

GO:0034394 "protein localization to cell surface" evidence=ISO

GO:0034613 "cellular protein localization" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043034 "costamere" evidence=ISO

GO:0043268 "positive regulation of potassium ion transport" evidence=ISO

GO:0044325 "ion channel binding" evidence=ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050821 "protein stabilization" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0051279 "regulation of release of sequestered calcium ion into cytosol" evidence=ISO

GO:0051597 "response to methylmercury" evidence=IEP

GO:0051924 "regulation of calcium ion transport" evidence=ISO

GO:0051928 "positive regulation of calcium ion transport" evidence=ISO

GO:0055117 "regulation of cardiac muscle contraction" evidence=ISO

GO:0060048 "cardiac muscle contraction" evidence=ISO

GO:0060307 "regulation of ventricular cardiac muscle cell membrane repolarization" evidence=ISO

GO:0070972 "protein localization to endoplasmic reticulum" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=ISO

GO:0086005 "regulation of ventricular cardiac muscle cell action potential" evidence=ISO

GO:0086014 "regulation of atrial cardiac muscle cell action potential" evidence=ISO

GO:0086015 "regulation of SA node cell action potential" evidence=ISO

GO:0086036 "regulation of cardiac muscle cell membrane potential" evidence=ISO

GO:0086066 "atrial cardiac muscle cell to AV node cell communication" evidence=ISO

GO:0086070 "SA node cell to atrial cardiac muscle cell communication" evidence=ISO

GO:0086091 "regulation of heart rate by cardiac conduction" evidence=ISO

GO:1901018 "positive regulation of potassium ion transmembrane transporter activity" evidence=ISO

GO:1901019 "regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:1901021 "positive regulation of calcium ion transmembrane transporter activity" evidence=ISO

GO:2001257 "regulation of cation channel activity" evidence=ISO

GO:2001259 "positive regulation of cation channel activity" evidence=ISO

ZFIN|ZDB-GENE-060526-136 ankdd1b "ankyrin repeat and death domain containing 1B" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 73/314 (23%), Positives = 136/314 (43%)

Query:    57 IGVEITN-HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVEL 115
             + V   N HG+TALH A     ++ V  LL+R +  DL  Q+K G TAV  A    S+E+
Sbjct:   113 VNVNAKNVHGRTALHYAVACRNVEAVDVLLRRRAKLDL--QDKHGLTAVHLAAWFGSLEI 170

Query:   116 VKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCI--ELLVQ 172
             +K  ++G     ++ + +G+  +  AA    T++V ++  + +   L  +D       V 
Sbjct:   171 LKLLVQGGAD-QSIENTEGLNMLHCAAMNNHTDIVAYIIDDLQMGELDKEDQFGNRPFVL 229

Query:   173 LIETGLYAVALQLLHDHRYLATKRAKNK-ETALHVLAR-----------KNLGDKDRKNK 220
                 G   +   L+ +H  +AT       +T LH+ A+           +N   ++  N+
Sbjct:   230 AAAHGCVPMLQMLMEEHYNMATMEENQVGDTPLHLAAKHGQREALQLLLENFHIRNEVNQ 289

Query:   221 EAETLV----ESLWEEVI--LLSKQEIWELIEQPREL-IHDAADRGNVQFLSILIREYPD 273
               +T +    +   E+ +  LL  Q    +    R   +H   +RG+ Q + +LI     
Sbjct:   290 AGQTALYLAADGAHEDCVQTLLEAQCDPNIFTLSRNSPLHPVCERGHFQIVQLLINSGAQ 349

Query:   274 LMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQ 333
             +   A  +   T FH+AV+N    +   + +    A    + TD  G   LH+A E+   
Sbjct:   350 I--NAQNQQMQTSFHLAVRNCHIPVIHTLLE----AGCDPNLTDHMGQTALHIAAEMGKV 403

Query:   334 HRLNVVSGSALQMQ 347
               + ++  + + +Q
Sbjct:   404 DVVEMILKAGVDLQ 417

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|J9NTH2 ANK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 172 (65.6 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 74/259 (28%), Positives = 119/259 (45%)

Query:    49 IYDKYEGEIGVEITN-HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107
             + +  +G I +   N +G  ALH+AA+   +  V++LL R S+ D A   K G TA+  A
Sbjct:    64 VVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSA--TKKGNTALHIA 121

Query:   108 VASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN--SLKDDD 165
               +   E+VK  +K    I     N G  P+  AA     +VV++L     N  +  +D 
Sbjct:   122 SLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQENHIDVVKYLLENGANQSTATEDG 180

Query:   166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL 225
                L V L +    AVA+ L +D     TK  K +  ALH+ ARK+    D K+  A  L
Sbjct:   181 FTPLAVALQQGHNQAVAILLEND-----TK-GKVRLPALHIAARKD----DTKS--AALL 228

Query:   226 VESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYT 285
             +++      + SK  +    E     +H AA  GNV   ++L+     + + A  ++  T
Sbjct:   229 LQND-HNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTA--RNGIT 285

Query:   286 IFHIAVKNRLEDLFKFIYD 304
               H+A K    ++ K + D
Sbjct:   286 PLHVASKRGNTNMVKLLLD 304

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1M5N3 Ank2 "Protein Ank2" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 74/259 (28%), Positives = 119/259 (45%)

Query:    49 IYDKYEGEIGVEITN-HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107
             + +  +G I +   N +G  ALH+AA+   +  V++LL R S+ D A   K G TA+  A
Sbjct:    25 VVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSA--TKKGNTALHIA 82

Query:   108 VASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN--SLKDDD 165
               +   E+VK  +K    I     N G  P+  AA     +VV++L     N  +  +D 
Sbjct:    83 SLAGQAEVVKVLVKEGANINAQSQN-GFTPLYMAAQENHIDVVKYLLENGANQSTATEDG 141

Query:   166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL 225
                L V L +    AVA+ L +D     TK  K +  ALH+ ARK+    D K+  A  L
Sbjct:   142 FTPLAVALQQGHNQAVAILLEND-----TK-GKVRLPALHIAARKD----DTKS--AALL 189

Query:   226 VESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYT 285
             +++      + SK  +    E     +H AA  GNV   ++L+     + + A  ++  T
Sbjct:   190 LQND-HNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTA--RNGIT 246

Query:   286 IFHIAVKNRLEDLFKFIYD 304
               H+A K    ++ K + D
Sbjct:   247 PLHVASKRGNTNMVKLLLD 265

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01520066 hypothetical protein (610 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	593
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-04
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  112 bits (283), Expect = 1e-29
 Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 13/119 (10%)

Query: 393 WMKDTASSCMIVATLIATIVFAAAITVPGGNKEDT-----GLPFFR-QKASFKIFAVSNV 446
           W++ T +S ++VATLIAT+ FAA  T PGG  +D      G P    +   FK F VSN 
Sbjct: 3   WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNT 62

Query: 447 ISLVASSVSIVNFLSIVAPRYAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIV 505
           I+ VAS V+++  L IV        F R LP +LL     L++++ ++MV F+A SY V
Sbjct: 63  IAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
           L+ AA NG   V K + +   G       N G+T LH+AA+   ++ VK LL++    D+
Sbjct: 11  LHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEK--GADV 66

Query: 94  AKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
             ++K G T +  A  + ++++VK  +K    +    D DG  P+  AA  G  EVV+ L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
                G+T LH+AA    ++ VK LL+  +  D+  ++  G T +  A  +  +E+VK  
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVK-L 58

Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           +          D DG  P+  AA  G  +VV+ L
Sbjct: 59  LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 10/86 (11%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKT--ALHVAAEANRIDFVKKLLKRMSAE 91
           L+ AA NG+  + K + +K     G ++ N G T  ALH+AA    ++ VK LL+  +  
Sbjct: 1   LHLAAKNGNLELVKLLLEK-----GADV-NLGDTDTALHLAARNGNLEIVKLLLEHGA-- 52

Query: 92  DLAKQNKIGCTAVFYAVASESVELVK 117
           D+  ++K G TA+  A  + ++E+VK
Sbjct: 53  DVNAKDKDGNTALHLAARNGNLEIVK 78

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 69  LHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIAT 128
           LH+AA+   ++ VK LL++  A+          TA+  A  + ++E+VK  ++ +     
Sbjct: 1   LHLAAKNGNLELVKLLLEK-GADVNLGDT---DTALHLAARNGNLEIVKLLLE-HGADVN 55

Query: 129 LPDNDGMLPIVRAASLGRTEVVEFL 153
             D DG   +  AA  G  E+V+ L
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 25/125 (20%)

Query: 251 LIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD 310
            +H AA  G+++ + +L+    D+   A   D  T  H+A KN   ++ K + +      
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVN--AKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-- 65

Query: 311 LMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNN 370
             V+  D+ GN  LHLA                L + + LL   A          +A++ 
Sbjct: 66  --VNARDKDGNTPLHLA-----------ARNGNLDVVKLLLKHGA--------DVNARDK 104

Query: 371 KGLTP 375
            G TP
Sbjct: 105 DGRTP 109

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 67  TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117
           TALH AA + R++ VK LL+     D+ + ++ G TA+  A  + ++E++K
Sbjct: 3   TALHKAAISGRLELVKYLLE--KGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 8/76 (10%)

Query: 252 IHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADL 311
           +H AA  GN++ + +L+ +  D+    +  D  T  H+A +N   ++ K + +    AD 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV----NLGDTDTALHLAARNGNLEIVKLLLEHG--AD- 53

Query: 312 MVDCTDEKGNNILHLA 327
            V+  D+ GN  LHLA
Sbjct: 54  -VNAKDKDGNTALHLA 68

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 15/157 (9%)

Query: 6   SLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEIT--N 63
             +   +   +   D  L A  +  RL L+ AA  GD     D   K     G ++   +
Sbjct: 49  PAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGD-----DKIVKLLLASGADVNAKD 103

Query: 64  H-GKTALHVAAEANR-----IDFVKKLLKR-MSAEDLAKQNKIGCTAVFYAVASESVELV 116
             G T LH+AA         I+  K LL+     +    +++ G T + +A  +   ++V
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 117 KATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           +  ++         ++ G+  +  AA  GR E+V+ L
Sbjct: 164 ELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107
            +G T LH+AA+   ++ V+ LLK     DL  ++  G TA+  A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKP--GVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 34 LYRAALNGDWAVAKDIYDKYEGEIGVEITN-HGKTALHVAAEANRIDFVKKLLKR 87
          L+ AA NG+  + K + +       V   +  G TALH+AA    ++ VK LL+ 
Sbjct: 32 LHLAARNGNLEIVKLLLEH---GADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 131 DNDGMLPIVRAASLGRTEVVEFLYRE-TKNSLKDDDCIELLVQLIETGLYAVALQLLHDH 189
           D DG  P+  AAS G  EVV+ L       + KD+D    L    + G   +   LL + 
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL-EK 62

Query: 190 RYLATKRAKNKETALHVLARKN 211
                 R K+  T LH+ AR  
Sbjct: 63  GADVNARDKDGNTPLHLAARNG 84

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 64 HGKTALHVAAEANRIDFVKKLLKR 87
           G T LH+AA    ++ VK LL+ 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	593
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02917	661	ankyrin-like protein; Provisional	100.0
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG0508	615	consensus Ankyrin repeat protein [General function	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02730	672	ankyrin-like protein; Provisional	100.0
PHA02792	631	ankyrin-like protein; Provisional	99.97
PHA02792	631	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
PF13962	113	PGG: Domain of unknown function	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.89
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02741	169	hypothetical protein; Provisional	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PHA02741	169	hypothetical protein; Provisional	99.81
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.74
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.7
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.62
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.4
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.37
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.33
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.31
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.31
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.3
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.24
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.99
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.8
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.74
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.6
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.58
KOG0522	560	consensus Ankyrin repeat protein [General function	98.57
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.5
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.49
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.46
PF13606	30	Ank_3: Ankyrin repeat	98.46
PF13606	30	Ank_3: Ankyrin repeat	98.46
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.41
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.38
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.37
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.29
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.09
KOG2384	223	consensus Major histocompatibility complex protein	97.9
KOG0511	516	consensus Ankyrin repeat protein [General function	97.88
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.88
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.8
KOG0511	516	consensus Ankyrin repeat protein [General function	97.73
KOG2384	223	consensus Major histocompatibility complex protein	97.7
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.64
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.2
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	95.82
KOG2505	591	consensus Ankyrin repeat protein [General function	95.36
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.96
KOG2505	591	consensus Ankyrin repeat protein [General function	94.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.26
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	93.82
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.73
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.71
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.16
cd07920	322	Pumilio Pumilio-family RNA binding domain. Puf rep	89.21
PLN03218	1060	maturation of RBCL 1; Provisional	85.45
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.89
PLN03218	1060	maturation of RBCL 1; Provisional	81.23

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=5.2e-45  Score=375.11  Aligned_cols=310  Identities=20%  Similarity=0.241  Sum_probs=277.6

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      +.|..|.+|||.|+....++.++.|++. |++...+ |..+.+|+|+|+..|+.+..+.|+++  ++++|..|..|.|||
T Consensus        83 a~D~~~n~~l~~a~~~~~~~~i~~Lls~-gad~~~~-n~~~~aplh~A~~~~~~s~L~~Ll~~--~~dvnl~de~~~TpL  158 (929)
T KOG0510|consen   83 AKDSADNTPLHAAVEYNQGDKIQVLLSY-GADTPLR-NLNKNAPLHLAADSGNYSCLKLLLDY--GADVNLEDENGFTPL  158 (929)
T ss_pred             hhhcccCchhHHHhhcchHHHHHHHHhc-CCCCChh-hhhccCchhhccccchHHHHHHHHHh--cCCccccccCCCchh
Confidence            6688899999999999999999999997 8888887 99999999999999999999999999  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc-----c-cccCCcchhHHHHHHHHcCC
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET-----K-NSLKDDDCIELLVQLIETGL  178 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-----~-~~~~~~~g~t~L~~A~~~~~  178 (593)
                      |+||..++.|..+.|++.|++. ...|.+|.+|+|.|++.|..|+.+..+.+.     . .+..++++.+|||.|+..|+
T Consensus       159 h~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~  237 (929)
T KOG0510|consen  159 HLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGD  237 (929)
T ss_pred             hHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCC
Confidence            9999999999889999999996 889999999999999999999999999832     2 67789999999999999999


Q ss_pred             HHHHHHHHHhcc--------------hhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHH
Q 007677          179 YAVALQLLHDHR--------------YLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWEL  244 (593)
Q Consensus       179 ~~~v~~Ll~~~~--------------~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~  244 (593)
                      .++++..|+...              .+++..|.+|.||||+|++.|+          .+.++.|+..|++++.++    
T Consensus       238 ~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~----------~~svd~Ll~~Ga~I~~kn----  303 (929)
T KOG0510|consen  238 IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGG----------PESVDNLLGFGASINSKN----  303 (929)
T ss_pred             HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCC----------hhHHHHHHHcCCcccccC----
Confidence            999999998732              3455678999999999999999          999999999999998766    


Q ss_pred             hhcchhHHHHHHHcCcHHHHHHHHH-HCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccc--cccCCCC
Q 007677          245 IEQPRELIHDAADRGNVQFLSILIR-EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVD--CTDEKGN  321 (593)
Q Consensus       245 ~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin--~~D~~G~  321 (593)
                       .++.||||.||..|+.+.++.||+ .+.-+.+..|.. |.||||+|+++||.+++++|++.|+..   .+  ..|.+|+
T Consensus       304 -~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~-g~tpLHlaa~~gH~~v~qlLl~~GA~~---~~~~e~D~dg~  378 (929)
T KOG0510|consen  304 -KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH-GMTPLHLAAKSGHDRVVQLLLNKGALF---LNMSEADSDGN  378 (929)
T ss_pred             -CCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc-CCCchhhhhhcCHHHHHHHHHhcChhh---hcccccccCCc
Confidence             788999999999999999999999 555566888999 999999999999999999999999984   33  5699999


Q ss_pred             chhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcchh
Q 007677          322 NILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKA  377 (593)
Q Consensus       322 T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~  377 (593)
                      ||||+|++.|+...++.+                   +.+|+++..+|++|++++|
T Consensus       379 TaLH~Aa~~g~~~av~~L-------------------i~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  379 TALHLAAKYGNTSAVQKL-------------------ISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             hhhhHHHHhccHHHHHHH-------------------HHcCCceeecccccccccc
Confidence            999999999998766554                   2356666666666666666

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=8.3e-43  Score=389.02  Aligned_cols=330  Identities=13%  Similarity=0.101  Sum_probs=243.4

Q ss_pred             HHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHH---------------
Q 007677            9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAA---------------   73 (593)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa---------------   73 (593)
                      ..++++.-...+.+....+..+.||||.|+..|+.|+|+.|++++|..++.. |..|+||||+|+               
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~t~LH~A~~~g~~e~V~~ll~~~~~~~~~~-~~~~~tpLh~a~~~~~~~~~~~~l~~~   98 (682)
T PHA02876         20 SAIDNYDLHKHGANQCENESIPFTAIHQALQLRQIDIVEEIIQQNPELIYIT-DHKCHSTLHTICIIPNVMDIVISLTLD   98 (682)
T ss_pred             HHHHHHHHhhhhhhhcccccccchHHHHHHHHHhhhHHHHHHHhCcccchhh-chhhccccccccCCCCccccccccccc
Confidence            3344443333333334557789999999999999999999999988766655 889999999666               


Q ss_pred             -------------------------------------------------------HcCCHHHHHHHHHcCCchhhhchhc
Q 007677           74 -------------------------------------------------------EANRIDFVKKLLKRMSAEDLAKQNK   98 (593)
Q Consensus        74 -------------------------------------------------------~~g~~~~v~~Ll~~~~~~~~~~~d~   98 (593)
                                                                             ..|+.+++++|++.  |++++.+|.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~--Gadvn~~d~  176 (682)
T PHA02876         99 CDIILDIKYASIILNKHKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEG--GADVNAKDI  176 (682)
T ss_pred             hhhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhC--CCCCCCCCC
Confidence                                                                   45788999999999  899999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--------------------
Q 007677           99 IGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--------------------  158 (593)
Q Consensus        99 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--------------------  158 (593)
                      .|.||||+|++.|+.++|++|+++|+++ +..+.+|.||||+|+..|+.+++++|++.+.                    
T Consensus       177 ~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~  255 (682)
T PHA02876        177 YCITPIHYAAERGNAKMVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLET  255 (682)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHH
Confidence            9999999999999999999999999997 7889999999999999999999988876554                    


Q ss_pred             ----------cccCCcchhHHHHHHHHcCCHH-HHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHH
Q 007677          159 ----------NSLKDDDCIELLVQLIETGLYA-VALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVE  227 (593)
Q Consensus       159 ----------~~~~~~~g~t~L~~A~~~~~~~-~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~  227 (593)
                                .+..+..|.||||.|+..++.+ +++.|++. +..++.+|.+|.||||+|+..+.         ..+.++
T Consensus       256 ~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh~Aa~~g~---------~~~~v~  325 (682)
T PHA02876        256 SLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLMAKNGY---------DTENIR  325 (682)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCC---------CHHHHH
Confidence                      2234556778888888777764 45555544 56667777778888888877763         156666


Q ss_pred             HHHHHHHhcChHHHHHHhhcchhHHHHHHHc-CcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhccc
Q 007677          228 SLWEEVILLSKQEIWELIEQPRELIHDAADR-GNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIK  306 (593)
Q Consensus       228 ~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  306 (593)
                      .|+..|++++..+     ..|.||||+|+.. ++.++++.|++.|+++ +.+|.. |+||||+|+..|+.+++++|++.|
T Consensus       326 ~Ll~~gadin~~d-----~~g~TpLh~A~~~~~~~~iv~lLl~~gadi-n~~d~~-G~TpLh~Aa~~~~~~iv~~Ll~~g  398 (682)
T PHA02876        326 TLIMLGADVNAAD-----RLYITPLHQASTLDRNKDIVITLLELGANV-NARDYC-DKTPIHYAAVRNNVVIINTLLDYG  398 (682)
T ss_pred             HHHHcCCCCCCcc-----cCCCcHHHHHHHhCCcHHHHHHHHHcCCCC-ccCCCC-CCCHHHHHHHcCCHHHHHHHHHCC
Confidence            7777766665443     5667777777664 3566677777777766 566666 777777777777777777777777


Q ss_pred             CccccccccccCCCCchhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhc-CcccccccCCCCCcchhhhhHH
Q 007677          307 PIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVV-PPKLRDAKNNKGLTPKALFSKE  382 (593)
Q Consensus       307 ~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~~  382 (593)
                      ++    ++..|..|.||||+|+..++..                   ..++.++ .+++++.+|.+|+||+|+|.+.
T Consensus       399 ad----~~~~~~~g~T~Lh~A~~~~~~~-------------------~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~  452 (682)
T PHA02876        399 AD----IEALSQKIGTALHFALCGTNPY-------------------MSVKTLIDRGANVNSKNKDLSTPLHYACKK  452 (682)
T ss_pred             CC----ccccCCCCCchHHHHHHcCCHH-------------------HHHHHHHhCCCCCCcCCCCCChHHHHHHHh
Confidence            66    5566677777777776554421                   1122222 5677777888888888887754

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.2e-42  Score=360.57  Aligned_cols=302  Identities=14%  Similarity=0.106  Sum_probs=252.8

Q ss_pred             cchHhHHHHH--cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677           30 RRLKLYRAAL--NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA  107 (593)
Q Consensus        30 ~~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A  107 (593)
                      +.++||.++.  .++.++++.|++. +.+++.+ |.+|.||||+|+..|+.++|++|+++  |++++.+|..|.||||+|
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~-Gadvn~~-d~~G~TpLh~Aa~~g~~eiv~lLL~~--GAdin~~d~~g~TpLh~A  112 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHR-GYSPNET-DDDGNYPLHIASKINNNRIVAMLLTH--GADPNACDKQHKTPLYYL  112 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHC-cCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHH
Confidence            4689998764  4577899999986 8899987 89999999999999999999999998  899999999999999999


Q ss_pred             HHcC--CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCC--HHHH
Q 007677          108 VASE--SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGL--YAVA  182 (593)
Q Consensus       108 ~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~--~~~v  182 (593)
                      +..+  +.+++++|+++|+++....|.+|.|||| |+..|+.+++++|++.++ .+..|..|.||||.|+..++  .+++
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v  191 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTI  191 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHH
Confidence            8876  4899999999999985567999999997 667789999999999998 88899999999999887654  5888


Q ss_pred             HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCc-H
Q 007677          183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGN-V  261 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~-~  261 (593)
                      +.|++. +.+++.+|.+|.||||+|+..+.        ...++++.|++ +++++..+     ..|.||||+|+..++ .
T Consensus       192 ~~Ll~~-Gadin~~d~~G~TpLH~Aa~~~~--------~~~~iv~lLl~-gadin~~d-----~~G~TpLh~A~~~~~~~  256 (446)
T PHA02946        192 SWMMKL-GISPSKPDHDGNTPLHIVCSKTV--------KNVDIINLLLP-STDVNKQN-----KFGDSPLTLLIKTLSPA  256 (446)
T ss_pred             HHHHHc-CCCCcccCCCCCCHHHHHHHcCC--------CcHHHHHHHHc-CCCCCCCC-----CCCCCHHHHHHHhCChH
Confidence            888887 77888899999999999998762        01678888875 66666544     899999999999988 5


Q ss_pred             HHHHHHHHHCCCc-------------------ccccc-CCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCC
Q 007677          262 QFLSILIREYPDL-------------------MWKAD-KKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGN  321 (593)
Q Consensus       262 ~~v~~Ll~~~~~~-------------------~~~~d-~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~  321 (593)
                      ++++.|++++.+.                   .+..+ .. |+||||+|+++|+.+++++|+++|.           .|+
T Consensus       257 ~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~-~~TpLh~Aa~~g~~eivk~Ll~~~~-----------~~~  324 (446)
T PHA02946        257 HLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQY-DSTDFKMAVEVGSIRCVKYLLDNDI-----------ICE  324 (446)
T ss_pred             HHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCccc-CCCHHHHHHHcCCHHHHHHHHHCCC-----------ccc
Confidence            8999999987642                   11222 34 7899999999999999999998753           478


Q ss_pred             chhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhHHH
Q 007677          322 NILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEH  383 (593)
Q Consensus       322 T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~  383 (593)
                      ||||+|+..++.++++.|                   +.++++++.+ .+|+||+++|.+..
T Consensus       325 t~L~~A~~~~~~~~v~~L-------------------l~~ga~~n~~-~~G~t~l~~a~~~~  366 (446)
T PHA02946        325 DAMYYAVLSEYETMVDYL-------------------LFNHFSVDSV-VNGHTCMSECVRLN  366 (446)
T ss_pred             cHHHHHHHhCHHHHHHHH-------------------HHCCCCCCCc-cccccHHHHHHHcC
Confidence            999999999886655544                   3478888886 57999999997654

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=356.89  Aligned_cols=298  Identities=14%  Similarity=0.120  Sum_probs=253.1

Q ss_pred             HHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCC--HHHHHHHHH
Q 007677            9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANR--IDFVKKLLK   86 (593)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~--~~~v~~Ll~   86 (593)
                      +..+.+.+.+.+.+  .+|.+|+||||.|+..|+.++++.|++. |++++.+ |..|.||||+|+..++  .+++++|++
T Consensus        53 ~iv~~Ll~~Gadvn--~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-GAdin~~-d~~g~TpLh~A~~~~~~~~e~v~lLl~  128 (446)
T PHA02946         53 RFVEELLHRGYSPN--ETDDDGNYPLHIASKINNNRIVAMLLTH-GADPNAC-DKQHKTPLYYLSGTDDEVIERINLLVQ  128 (446)
T ss_pred             HHHHHHHHCcCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            44555666665444  7899999999999999999999999986 8999987 9999999999998764  899999999


Q ss_pred             cCCchhhhc-hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC--CHHHHHHHHHhcc-cccC
Q 007677           87 RMSAEDLAK-QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG--RTEVVEFLYRETK-NSLK  162 (593)
Q Consensus        87 ~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~-~~~~  162 (593)
                      +  |++++. .|..|.|||| ||..|+.++++.|++.|+++ +.+|..|+||||+|+..+  +.+++++|++.|+ .+..
T Consensus       129 ~--Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~  204 (446)
T PHA02946        129 Y--GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKP  204 (446)
T ss_pred             c--CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCccc
Confidence            9  899885 6899999998 77789999999999999997 889999999999998765  4689999999999 8889


Q ss_pred             CcchhHHHHHHHHcC--CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHH
Q 007677          163 DDDCIELLVQLIETG--LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE  240 (593)
Q Consensus       163 ~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~  240 (593)
                      |.+|.||||+|+..+  +.++++.|+.  +.+++.+|..|.||||+|+..++         ..++++.|++.|...+...
T Consensus       205 d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~---------~~~~~~~Ll~~g~~~~~~~  273 (446)
T PHA02946        205 DHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLS---------PAHLINKLLSTSNVITDQT  273 (446)
T ss_pred             CCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCC---------hHHHHHHHHhCCCCCCCcH
Confidence            999999999999986  7788888874  57889999999999999999876         1367778877765432111


Q ss_pred             ---------------HHHH-hhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          241 ---------------IWEL-IEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       241 ---------------~~~~-~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                                     .... +..|.||||+|+.+|+.+++++|+++++        . |+||||+|+.+++.+++++|+.
T Consensus       274 ~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~-~~t~L~~A~~~~~~~~v~~Ll~  344 (446)
T PHA02946        274 VNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------I-CEDAMYYAVLSEYETMVDYLLF  344 (446)
T ss_pred             HHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------c-cccHHHHHHHhCHHHHHHHHHH
Confidence                           1111 1346799999999999999999999753        4 8999999999999999999999


Q ss_pred             ccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          305 IKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       305 ~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      +|++    +|.+ .+|+||||+|++.++.++++.+
T Consensus       345 ~ga~----~n~~-~~G~t~l~~a~~~~~~~~~~~l  374 (446)
T PHA02946        345 NHFS----VDSV-VNGHTCMSECVRLNNPVILSKL  374 (446)
T ss_pred             CCCC----CCCc-cccccHHHHHHHcCCHHHHHHH
Confidence            9998    7775 5899999999999998877655

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.2e-40  Score=349.08  Aligned_cols=273  Identities=17%  Similarity=0.184  Sum_probs=225.8

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCC
Q 007677           33 KLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES  112 (593)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~  112 (593)
                      .|+.|+..|+.+.++.|++..+..++.. +..|.||||.|++.|+.++|++|++.  |++++..+..|.||||.|+..|+
T Consensus         4 ~l~~ai~~gd~~~v~~ll~~~~~~~n~~-~~~~~tpL~~A~~~g~~~iv~~Ll~~--Ga~~n~~~~~~~t~L~~A~~~~~   80 (434)
T PHA02874          4 DLRMCIYSGDIEAIEKIIKNKGNCINIS-VDETTTPLIDAIRSGDAKIVELFIKH--GADINHINTKIPHPLLTAIKIGA   80 (434)
T ss_pred             HHHHHHhcCCHHHHHHHHHcCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCC
Confidence            5889999999999999999878777766 77899999999999999999999998  89999999999999999999999


Q ss_pred             HHHHHHHHhcCCCC----------------------CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHH
Q 007677          113 VELVKATMKGNEGI----------------------ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIEL  169 (593)
Q Consensus       113 ~~iv~~Ll~~~~~~----------------------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~  169 (593)
                      .+++++|+++|++.                      .+.++..|.||||+|+..|+.+++++|+++++ .+..+..|.||
T Consensus        81 ~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tp  160 (434)
T PHA02874         81 HDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYP  160 (434)
T ss_pred             HHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            99999999887653                      24567778888888888888888888888887 77778888888


Q ss_pred             HHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcch
Q 007677          170 LVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPR  249 (593)
Q Consensus       170 L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~  249 (593)
                      ||.|+..++.++++.|++. +...+.+|..|.||||+|+..++          .+++++|++.|++++..+     ..|.
T Consensus       161 Lh~A~~~~~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~g~----------~~iv~~Ll~~g~~i~~~~-----~~g~  224 (434)
T PHA02874        161 IHIAIKHNFFDIIKLLLEK-GAYANVKDNNGESPLHNAAEYGD----------YACIKLLIDHGNHIMNKC-----KNGF  224 (434)
T ss_pred             HHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCC----------HHHHHHHHhCCCCCcCCC-----CCCC
Confidence            8888888888888888877 55566778888888888888887          788888888887765443     6788


Q ss_pred             hHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcC-chhHHHHHhcccCccccccccccCCCCchhHhhh
Q 007677          250 ELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNR-LEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAG  328 (593)
Q Consensus       250 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~-~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~  328 (593)
                      ||||.|+..+. +.+++|+ .++++ +.+|.. |+||||+|+..+ +.+++++|+++|++    ++.+|..|+||||+|+
T Consensus       225 TpL~~A~~~~~-~~i~~Ll-~~~~i-n~~d~~-G~TpLh~A~~~~~~~~iv~~Ll~~gad----~n~~d~~g~TpL~~A~  296 (434)
T PHA02874        225 TPLHNAIIHNR-SAIELLI-NNASI-NDQDID-GSTPLHHAINPPCDIDIIDILLYHKAD----ISIKDNKGENPIDTAF  296 (434)
T ss_pred             CHHHHHHHCCh-HHHHHHH-cCCCC-CCcCCC-CCCHHHHHHhcCCcHHHHHHHHHCcCC----CCCCCCCCCCHHHHHH
Confidence            88888887765 5566665 46776 677887 888888888765 67888888888887    7788888888888888


Q ss_pred             hhCC
Q 007677          329 ELAP  332 (593)
Q Consensus       329 ~~~~  332 (593)
                      +.++
T Consensus       297 ~~~~  300 (434)
T PHA02874        297 KYIN  300 (434)
T ss_pred             HhCC
Confidence            7763

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-40  Score=367.71  Aligned_cols=308  Identities=17%  Similarity=0.093  Sum_probs=249.7

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      ..++|+.|+..|+.++++.|++. |++++.+ |..|.||||+|++.|+.++|++|+++  |++++..+..|.||||+|+.
T Consensus       145 ~~~~l~~~i~~~~~~i~k~Ll~~-Gadvn~~-d~~G~TpLh~Aa~~G~~~iv~~LL~~--Gad~n~~~~~g~t~L~~A~~  220 (682)
T PHA02876        145 YMKLIKERIQQDELLIAEMLLEG-GADVNAK-DIYCITPIHYAAERGNAKMVNLLLSY--GADVNIIALDDLSVLECAVD  220 (682)
T ss_pred             hhHHHHHHHHCCcHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCccCCCCCCHHHHHHH
Confidence            34566777777777777766664 6667665 66777777777777777777777776  66777777777777777777


Q ss_pred             cCCHHHHHHHHh-----------------------------cCCCCCccCCCCCCCHHHHHHHcCCH-HHHHHHHHhcc-
Q 007677          110 SESVELVKATMK-----------------------------GNEGIATLPDNDGMLPIVRAASLGRT-EVVEFLYRETK-  158 (593)
Q Consensus       110 ~g~~~iv~~Ll~-----------------------------~~~~~~~~~~~~g~tpL~~A~~~g~~-~iv~~Ll~~~~-  158 (593)
                      .|+.++++.|++                             .|.++ +..+..|.||||+|+..|+. +++++|++.++ 
T Consensus       221 ~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~v-n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad  299 (682)
T PHA02876        221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSV-NSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD  299 (682)
T ss_pred             cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC
Confidence            776666665554                             44444 56778899999999999986 69999999998 


Q ss_pred             cccCCcchhHHHHHHHHcC-CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcC
Q 007677          159 NSLKDDDCIELLVQLIETG-LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS  237 (593)
Q Consensus       159 ~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  237 (593)
                      .+..|..|.||||.|+..| ..++++.|+.. +..++.+|..|.||||+|+..+.         ..++++.|++.|++++
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~-gadin~~d~~g~TpLh~A~~~~~---------~~~iv~lLl~~gadin  369 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIML-GADVNAADRLYITPLHQASTLDR---------NKDIVITLLELGANVN  369 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHc-CCCCCCcccCCCcHHHHHHHhCC---------cHHHHHHHHHcCCCCc
Confidence            8889999999999999999 47888887776 77788899999999999998653         1678899999998887


Q ss_pred             hHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCc-hhHHHHHhcccCccccccccc
Q 007677          238 KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRL-EDLFKFIYDIKPIADLMVDCT  316 (593)
Q Consensus       238 ~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~-~~iv~~Ll~~~~~~~~lin~~  316 (593)
                      ..+     ..|.||||+|+..|+.++++.|+++|+++ +..+.. |.||||+|+..++ ..++++|++.|++    +|.+
T Consensus       370 ~~d-----~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~-~~~~~~-g~T~Lh~A~~~~~~~~~vk~Ll~~gad----in~~  438 (682)
T PHA02876        370 ARD-----YCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQK-IGTALHFALCGTNPYMSVKTLIDRGAN----VNSK  438 (682)
T ss_pred             cCC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCc-cccCCC-CCchHHHHHHcCCHHHHHHHHHhCCCC----CCcC
Confidence            654     78999999999999999999999999998 788888 9999999998665 5679999999998    8899


Q ss_pred             cCCCCchhHhhhhhCC-CcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhHH
Q 007677          317 DEKGNNILHLAGELAP-QHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKE  382 (593)
Q Consensus       317 D~~G~T~LH~A~~~~~-~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~  382 (593)
                      |..|+||||+|++.+. .++++.|                   +-.|++++.+|..|.||+++|.+.
T Consensus       439 d~~G~TpLh~Aa~~~~~~~iv~lL-------------------l~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        439 NKDLSTPLHYACKKNCKLDVIEML-------------------LDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCCCChHHHHHHHhCCcHHHHHHH-------------------HHCCCCCCCCCCCCCCHHHHHHHh
Confidence            9999999999998763 3444332                   227899999999999999998753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.3e-39  Score=347.95  Aligned_cols=317  Identities=14%  Similarity=0.102  Sum_probs=252.7

Q ss_pred             cchHhHHH-----HHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677           30 RRLKLYRA-----ALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEA--NRIDFVKKLLKRMSAEDLAKQNKIGCT  102 (593)
Q Consensus        30 ~~t~Lh~A-----a~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~T  102 (593)
                      +..+++..     ...++.+++++|++....+++.+.|..|.||||.|+..  ++.++|++|+++  |++++.+|..|.|
T Consensus       137 d~~~~~~y~~al~~~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~--GADVN~kD~~G~T  214 (764)
T PHA02716        137 DMDILYTYFNSPNTRGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNN--GVNVNLQNNHLIT  214 (764)
T ss_pred             cchHHHHHHhhhcccCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHc--CCCCCCCCCCCCC
Confidence            44555554     34689999999999733889876578899999998754  679999999999  8999999999999


Q ss_pred             HHHHHHHcCC--HHHHHHHHhcCCCCCccCCCCCCCHHHHHH---HcCCHHHHHHHHHhcccccCCcchhHHHH---HHH
Q 007677          103 AVFYAVASES--VELVKATMKGNEGIATLPDNDGMLPIVRAA---SLGRTEVVEFLYRETKNSLKDDDCIELLV---QLI  174 (593)
Q Consensus       103 pLh~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~---~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~---~A~  174 (593)
                      |||+|++.|+  .++|+.|+++|+++ +.+|..|.||||+|+   ..++.++++.|++....+.. .....+++   .|+
T Consensus       215 PLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~-~~~~~~L~~~i~AA  292 (764)
T PHA02716        215 PLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKV-KNIPMILHSYITLA  292 (764)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccc-ccchhhhHHHHHHH
Confidence            9999999995  59999999999997 889999999999886   56789999999987541111 11123333   478


Q ss_pred             HcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhc--CCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHH
Q 007677          175 ETGLYAVALQLLHDHRYLATKRAKNKETALHVLARK--NLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELI  252 (593)
Q Consensus       175 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~--~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpL  252 (593)
                      ..|+.++++.|++. +..++.+|.+|+||||+|+..  ++          .+++++|++.|++++..+     ..|.|||
T Consensus       293 ~~g~leiVklLLe~-GAdIN~kD~~G~TPLH~Aaa~~~~~----------~eIVklLLe~GADIN~kD-----~~G~TPL  356 (764)
T PHA02716        293 RNIDISVVYSFLQP-GVKLHYKDSAGRTCLHQYILRHNIS----------TDIIKLLHEYGNDLNEPD-----NIGNTVL  356 (764)
T ss_pred             HcCCHHHHHHHHhC-CCceeccCCCCCCHHHHHHHHhCCC----------chHHHHHHHcCCCCccCC-----CCCCCHH
Confidence            89999999999987 677888999999999997653  34          689999999998887654     8899999


Q ss_pred             HHHHH--------------cCcHHHHHHHHHHCCCccccccCCCCchHHHHH----HHcCchhHHHHHhcccCcc-----
Q 007677          253 HDAAD--------------RGNVQFLSILIREYPDLMWKADKKDNYTIFHIA----VKNRLEDLFKFIYDIKPIA-----  309 (593)
Q Consensus       253 h~Aa~--------------~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~A----v~~~~~~iv~~Ll~~~~~~-----  309 (593)
                      |+|+.              .|+.++++.|+++|+++ +.+|.. |+||||.+    ...++.+++++|++.|...     
T Consensus       357 H~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~-G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~  434 (764)
T PHA02716        357 HTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNCL-GYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHR  434 (764)
T ss_pred             HHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCcCCC-CCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhh
Confidence            99875              37899999999999998 889999 99999942    3356789999988764310     


Q ss_pred             ----------------------------------------------------ccccccccCCCCchhHhhhhhCCCcccc
Q 007677          310 ----------------------------------------------------DLMVDCTDEKGNNILHLAGELAPQHRLN  337 (593)
Q Consensus       310 ----------------------------------------------------~~lin~~D~~G~T~LH~A~~~~~~~~~~  337 (593)
                                                                          ...+|.+|..|+||||+|+..++.+.+.
T Consensus       435 ~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~  514 (764)
T PHA02716        435 ILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIV  514 (764)
T ss_pred             hhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchh
Confidence                                                                0113566889999999999988765431


Q ss_pred             cccCchHhhHHHHHHHHHhhhhc-CcccccccCCCCCcchhhhhHHH
Q 007677          338 VVSGSALQMQRELLWFKAVKDVV-PPKLRDAKNNKGLTPKALFSKEH  383 (593)
Q Consensus       338 ~l~~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~~~  383 (593)
                      .               +.++.++ .|++++.+|++|+||+++|.+..
T Consensus       515 ~---------------e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        515 M---------------DSFVYLLSIQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             H---------------HHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Confidence            0               1223333 68999999999999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=5.7e-39  Score=339.53  Aligned_cols=341  Identities=13%  Similarity=0.084  Sum_probs=254.9

Q ss_pred             hHHHHHHhhhhccccCCCccccccchHhHHHHHcC---CHHHHHHHHhhCccccccccCCCCCcHHHHHHHcC--CHHHH
Q 007677            7 LSKQLKEDKRKESDEQLPAETITRRLKLYRAALNG---DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEAN--RIDFV   81 (593)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v   81 (593)
                      ....++...+...+.+ +.+|..|+||||.|+..|   +.++|+.|++. |++++.+ |..|.||||+|+..|  +.|+|
T Consensus        19 ~~~~~~~~~~~~~~in-~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-GAdin~k-D~~G~TPLh~Aa~~~~~~~eIv   95 (672)
T PHA02730         19 TYKKIKLEIETCHNLS-KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-GVERLCR-NNEGLTPLGVYSKRKYVKSQIV   95 (672)
T ss_pred             hHHHHHHHHHHhcchh-hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-CCCCccc-CCCCCChHHHHHHcCCCcHHHH
Confidence            4556666666653222 367889999999999997   59999999975 9999988 999999999999977  79999


Q ss_pred             HHHHHcCCchhhhchhcCCChHHHHHHH--cCCHHHHHHHHh-cCCCCCccCC----CCCCCHHHHHHHcCCHHHHHHHH
Q 007677           82 KKLLKRMSAEDLAKQNKIGCTAVFYAVA--SESVELVKATMK-GNEGIATLPD----NDGMLPIVRAASLGRTEVVEFLY  154 (593)
Q Consensus        82 ~~Ll~~~~~~~~~~~d~~g~TpLh~A~~--~g~~~iv~~Ll~-~~~~~~~~~~----~~g~tpL~~A~~~g~~~iv~~Ll  154 (593)
                      ++|++.+.+++.+..+..+++|||.++.  +++.+++++|++ .+.++....+    ..|.+|+++|...++.|+|++|+
T Consensus        96 ~~Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi  175 (672)
T PHA02730         96 HLLISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLL  175 (672)
T ss_pred             HHHHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHH
Confidence            9999996566678888889999999998  899999999997 4455422222    37999999999999999999999


Q ss_pred             Hhcc-cc--------cCCcchhHHHHHHH------HcCCHHHHHHHHHhcchhhhccccCCccHHHH--HHhcCC-----
Q 007677          155 RETK-NS--------LKDDDCIELLVQLI------ETGLYAVALQLLHDHRYLATKRAKNKETALHV--LARKNL-----  212 (593)
Q Consensus       155 ~~~~-~~--------~~~~~g~t~L~~A~------~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~--a~~~~~-----  212 (593)
                      ++|+ .+        ..++.+.+.||+++      ..+..++++.|+++ |.+++.+|.+|+||||+  +...++     
T Consensus       176 ~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~-GadIN~kd~~G~TpLh~~~~~~~~~~eiv~  254 (672)
T PHA02730        176 KSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDN-NVSIHGRDEGGSLPIQYYWSCSTIDIEIVK  254 (672)
T ss_pred             HcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCcccHHHHH
Confidence            9999 42        23344556677443      45678999999998 78899999999999995  332222     


Q ss_pred             ------------------------------------------C--------------------c-ccc-c----------
Q 007677          213 ------------------------------------------G--------------------D-KDR-K----------  218 (593)
Q Consensus       213 ------------------------------------------~--------------------~-~~~-~----------  218 (593)
                                                                .                    . ... .          
T Consensus       255 ~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~  334 (672)
T PHA02730        255 LLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKR  334 (672)
T ss_pred             HHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHh
Confidence                                                      0                    0 000 0          


Q ss_pred             -------------------c-hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCc----HHHHHHHHHHCCC-
Q 007677          219 -------------------N-KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGN----VQFLSILIREYPD-  273 (593)
Q Consensus       219 -------------------~-~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~-  273 (593)
                                         . ....+++++|+++|++++..      ..|.||||+|+..++    .++++.|+++|++ 
T Consensus       335 ~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k------~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~  408 (672)
T PHA02730        335 FRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT------TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHM  408 (672)
T ss_pred             hhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC------CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCc
Confidence                               0 12355666666666666632      567888888887774    7888888888863 


Q ss_pred             ccccccCCCCchHHHH---HHHcC---------chhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccC
Q 007677          274 LMWKADKKDNYTIFHI---AVKNR---------LEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSG  341 (593)
Q Consensus       274 ~~~~~d~~~g~t~Lh~---Av~~~---------~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~  341 (593)
                      .++.+|.. |+||||.   |...+         ..+++++|+++|++    +|.+|..|+||||+|+..++.++++.|  
T Consensus       409 dIN~kd~~-G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD----INakD~~G~TPLh~Aa~~~~~eive~L--  481 (672)
T PHA02730        409 AINHVSNN-GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDD----IDMIDNENKTLLYYAVDVNNIQFARRL--  481 (672)
T ss_pred             cccccccC-CCchHhHHHHHHhccccccccchhHHHHHHHHHhcccc----hhccCCCCCCHHHHHHHhCCHHHHHHH--
Confidence            22677887 8888883   33222         23468888888888    788888888888888888775544433  


Q ss_pred             chHhhHHHHHHHHHhhhhcCcccccccCC-CCCcchhhhhH
Q 007677          342 SALQMQRELLWFKAVKDVVPPKLRDAKNN-KGLTPKALFSK  381 (593)
Q Consensus       342 ~~l~~~~~l~~~~~v~~l~~~~~~~~~n~-~G~Tpl~~a~~  381 (593)
                                       +..|++++.+|+ .|.||++.+..
T Consensus       482 -----------------I~~GAdIN~~d~~~g~TaL~~Aa~  505 (672)
T PHA02730        482 -----------------LEYGASVNTTSRSIINTAIQKSSY  505 (672)
T ss_pred             -----------------HHCCCCCCCCCCcCCcCHHHHHHH
Confidence                             336888888886 58999988865

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-39  Score=335.37  Aligned_cols=315  Identities=17%  Similarity=0.126  Sum_probs=272.3

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      ..+..|++++|.|+..+..      +++ -....+. |..|+||||+|+.....+.|+.|++.  |++.+..|.++.+|+
T Consensus        56 ~~~~~gd~~~~~~~~~~y~------~~~-~~~~~a~-D~~~n~~l~~a~~~~~~~~i~~Lls~--gad~~~~n~~~~apl  125 (929)
T KOG0510|consen   56 GKRAFGDTELHHASARNYI------LSK-LAISYAK-DSADNTPLHAAVEYNQGDKIQVLLSY--GADTPLRNLNKNAPL  125 (929)
T ss_pred             hhhhhchhHHHHHHhhcch------hhh-hhhhhhh-hcccCchhHHHhhcchHHHHHHHHhc--CCCCChhhhhccCch
Confidence            6678899999999988754      222 2223334 88899999999999999999999999  999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      |+|+..|+.++.+.|+++|+++ +..|..|.||||+|+..++.|..+.|++.++ +...|.+|..|+|.|++.|..+..+
T Consensus       126 h~A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mE  204 (929)
T KOG0510|consen  126 HLAADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECME  204 (929)
T ss_pred             hhccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhh
Confidence            9999999999999999999997 8999999999999999999998899999999 7788999999999999999999999


Q ss_pred             HHHHhcc----hhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHH----------HHHHhhcch
Q 007677          184 QLLHDHR----YLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE----------IWELIEQPR  249 (593)
Q Consensus       184 ~Ll~~~~----~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~----------~~~~~~~g~  249 (593)
                      .++.++|    ..++..+.+|.+|||.|+..|+          .+.++..++.+...+...          .+..|++|.
T Consensus       205 i~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~----------~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~  274 (929)
T KOG0510|consen  205 IFLPEHGYERQTHINFDNNEKATPLHLAVEGGD----------IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGC  274 (929)
T ss_pred             hhhccccchhhcccccccCCCCcchhhhhhcCC----------HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCC
Confidence            9998433    4566788899999999999999          888988888876544322          345688999


Q ss_pred             hHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhh
Q 007677          250 ELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE  329 (593)
Q Consensus       250 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~  329 (593)
                      ||||+|++.|+.+.++.|+..|+++ +.++.+ +.||||.|+.+|+.+.++-|++ ..+.. ++|..|-.|+||||+|++
T Consensus       275 tpLH~a~r~G~~~svd~Ll~~Ga~I-~~kn~d-~~spLH~AA~yg~~ntv~rLL~-~~~~r-llne~D~~g~tpLHlaa~  350 (929)
T KOG0510|consen  275 TPLHYAARQGGPESVDNLLGFGASI-NSKNKD-EESPLHFAAIYGRINTVERLLQ-ESDTR-LLNESDLHGMTPLHLAAK  350 (929)
T ss_pred             chHHHHHHcCChhHHHHHHHcCCcc-cccCCC-CCCchHHHHHcccHHHHHHHHh-CcCcc-ccccccccCCCchhhhhh
Confidence            9999999999999999999999999 899988 9999999999999999999999 22222 589999999999999999


Q ss_pred             hCCCcccccccCchHhhHHHHHHHHHhhhhcCccccc---ccCCCCCcchhhhhHHH
Q 007677          330 LAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRD---AKNNKGLTPKALFSKEH  383 (593)
Q Consensus       330 ~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~---~~n~~G~Tpl~~a~~~~  383 (593)
                      .||..+++.|                   +-.|+...   ..|.+|+||||.|+.+.
T Consensus       351 ~gH~~v~qlL-------------------l~~GA~~~~~~e~D~dg~TaLH~Aa~~g  388 (929)
T KOG0510|consen  351 SGHDRVVQLL-------------------LNKGALFLNMSEADSDGNTALHLAAKYG  388 (929)
T ss_pred             cCHHHHHHHH-------------------HhcChhhhcccccccCCchhhhHHHHhc
Confidence            9998776655                   11233332   34999999999998654

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=4e-39  Score=345.63  Aligned_cols=280  Identities=14%  Similarity=0.120  Sum_probs=250.6

Q ss_pred             HHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcC---CHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           35 YRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEAN---RIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        35 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ..++..++.+.++.|++. |++++.+ +..|.||||+|+..|   +.++++.|++.  |++++.+|..|.||||+|+..|
T Consensus        19 ~~~~~~~~~~~v~~Ll~~-ga~vn~~-~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~--Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAA-GADVNFR-GEYGKTPLHLYLHYSSEKVKDIVRLLLEA--GADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             HHcCCCCCHHHHHHHHHc-CCCcccC-CCCCCCHHHHHHHhcCCChHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcC
Confidence            556788999999999986 8999987 899999999999998   99999999999  8999999999999999999999


Q ss_pred             -CHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--HcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcC--CHHHHHHH
Q 007677          112 -SVELVKATMKGNEGIATLPDNDGMLPIVRAA--SLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETG--LYAVALQL  185 (593)
Q Consensus       112 -~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~--~~~~v~~L  185 (593)
                       +.+++++|+++|+++ +.+|..|.||||+|+  ..++.+++++|++.++ .+..+..|.||||.|+..+  ..++++.|
T Consensus        95 ~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L  173 (471)
T PHA03095         95 TTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL  173 (471)
T ss_pred             CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH
Confidence             599999999999997 889999999999999  5678999999999998 8888999999999998876  57889999


Q ss_pred             HHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH--HH
Q 007677          186 LHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV--QF  263 (593)
Q Consensus       186 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~--~~  263 (593)
                      ++. +......|..|.||||+++....        ...++++.|++.|++++..+     ..|.||||+|+..|+.  .+
T Consensus       174 l~~-g~~~~~~d~~g~t~Lh~~~~~~~--------~~~~i~~~Ll~~g~~~~~~d-----~~g~tpLh~Aa~~~~~~~~~  239 (471)
T PHA03095        174 IDA-GADVYAVDDRFRSLLHHHLQSFK--------PRARIVRELIRAGCDPAATD-----MLGNTPLHSMATGSSCKRSL  239 (471)
T ss_pred             HHc-CCCCcccCCCCCCHHHHHHHHCC--------CcHHHHHHHHHcCCCCcccC-----CCCCCHHHHHHhcCCchHHH
Confidence            988 45555569999999999987532        12688999999999887655     8899999999999975  68


Q ss_pred             HHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      ++.|++.+.++ +.+|.. |+||||+|+..|+.+++++|++.|++    ++.+|.+|+||||+|+..++.+++..+
T Consensus       240 v~~ll~~g~di-n~~d~~-g~TpLh~A~~~~~~~~v~~LL~~gad----~n~~~~~g~tpl~~A~~~~~~~~v~~L  309 (471)
T PHA03095        240 VLPLLIAGISI-NARNRY-GQTPLHYAAVFNNPRACRRLIALGAD----INAVSSDGNTPLSLMVRNNNGRAVRAA  309 (471)
T ss_pred             HHHHHHcCCCC-CCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            89999999998 889988 99999999999999999999999998    789999999999999999998777654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.7e-38  Score=339.92  Aligned_cols=302  Identities=14%  Similarity=0.063  Sum_probs=238.2

Q ss_pred             HHHHHHhhhhc-cccCCCcc-ccccchHhHHHHH--cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCC--HHHH
Q 007677            8 SKQLKEDKRKE-SDEQLPAE-TITRRLKLYRAAL--NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANR--IDFV   81 (593)
Q Consensus         8 ~~~l~~~~~~~-~~~~~~~~-~~~~~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~--~~~v   81 (593)
                      .+..+.+...+ .+.+  .+ |..|.||||.|+.  +|+.++++.|++. |++++.+ |..|.||||+|++.|+  .++|
T Consensus       155 leiVk~LLe~G~ADIN--~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-GADVN~k-D~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        155 LDLIKYMVDVGIVNLN--YVCKKTGYGILHAYLGNMYVDIDILEWLCNN-GVNVNLQ-NNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             HHHHHHHHHCCCCCcc--cccCCCCCcHHHHHHHhccCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCCCHHHH
Confidence            45556666665 4333  55 7889999999864  4688999999986 8999987 9999999999999995  5999


Q ss_pred             HHHHHcCCchhhhchhcCCChHHHHH-------------------------------------HHcCCHHHHHHHHhcCC
Q 007677           82 KKLLKRMSAEDLAKQNKIGCTAVFYA-------------------------------------VASESVELVKATMKGNE  124 (593)
Q Consensus        82 ~~Ll~~~~~~~~~~~d~~g~TpLh~A-------------------------------------~~~g~~~iv~~Ll~~~~  124 (593)
                      ++|+++  |++++.+|..|+||||.|                                     ++.|+.++++.|+++|+
T Consensus       231 klLLe~--GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        231 KKIIEL--GGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHc--CCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            999999  899999999999999975                                     45588999999999999


Q ss_pred             CCCccCCCCCCCHHHHHHH--cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHH--------------cCCHHHHHHHHH
Q 007677          125 GIATLPDNDGMLPIVRAAS--LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIE--------------TGLYAVALQLLH  187 (593)
Q Consensus       125 ~~~~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~--------------~~~~~~v~~Ll~  187 (593)
                      ++ +.+|..|+||||+|+.  .++.+++++|+++|+ .+.+|..|.||||.|+.              .++.++++.|++
T Consensus       309 dI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~  387 (764)
T PHA02716        309 KL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS  387 (764)
T ss_pred             ce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence            97 7899999999999875  468999999999999 88899999999999875              367899999998


Q ss_pred             hcchhhhccccCCccHHHHHH----hcCCCcccccchhHHHHHHHHHHHHHhcChHHHH-H--HhhcchhH--HHHHHHc
Q 007677          188 DHRYLATKRAKNKETALHVLA----RKNLGDKDRKNKEAETLVESLWEEVILLSKQEIW-E--LIEQPREL--IHDAADR  258 (593)
Q Consensus       188 ~~~~~~~~~d~~g~t~Lh~a~----~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~-~--~~~~g~tp--Lh~Aa~~  258 (593)
                      . +.+++.+|..|.||||.++    ..++          .++++.|++.+......+.. +  .+..+.+|  +|.++..
T Consensus       388 ~-GADIn~kn~~G~TPLh~y~~~a~n~~~----------~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~  456 (764)
T PHA02716        388 L-GADITAVNCLGYTPLTSYICTAQNYMY----------YDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAK  456 (764)
T ss_pred             C-CCCCCCcCCCCCChHHHHHHHHHhcCh----------HHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHh
Confidence            7 7888999999999999422    2233          78999999876543221100 0  01122333  5555554


Q ss_pred             CcHHH------------------HHHHHHHCCCccccccCCCCchHHHHHHHcCchh-----HHHHHhcccCcccccccc
Q 007677          259 GNVQF------------------LSILIREYPDLMWKADKKDNYTIFHIAVKNRLED-----LFKFIYDIKPIADLMVDC  315 (593)
Q Consensus       259 g~~~~------------------v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~-----iv~~Ll~~~~~~~~lin~  315 (593)
                      ++.+.                  +..++..+.++ +..|.. |+||||+|+..|+.+     ++++|++.|++    +|.
T Consensus       457 ~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nv-N~~D~~-G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD----IN~  530 (764)
T PHA02716        457 YNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNN-AVCETS-GMTPLHVSIISHTNANIVMDSFVYLLSIQYN----INI  530 (764)
T ss_pred             cCcchhhhhhhhhhccccccchhhHHHHHhhccc-cccCCC-CCCHHHHHHHcCCccchhHHHHHHHHhCCCC----Ccc
Confidence            44332                  22333344444 677888 999999999998774     55999999999    889


Q ss_pred             ccCCCCchhHhhhhhCCC
Q 007677          316 TDEKGNNILHLAGELAPQ  333 (593)
Q Consensus       316 ~D~~G~T~LH~A~~~~~~  333 (593)
                      +|++|+||||+|++.|+.
T Consensus       531 ~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        531 PTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             cCCCCCCHHHHHHHcCCc
Confidence            999999999999999975

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=327.67  Aligned_cols=281  Identities=18%  Similarity=0.178  Sum_probs=242.7

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC----------------
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRM----------------   88 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~----------------   88 (593)
                      ..+..|.||||.|+..|+.++|++|++. |.+++.. +..|.||||.|+..|+.++|++|++++                
T Consensus        30 ~~~~~~~tpL~~A~~~g~~~iv~~Ll~~-Ga~~n~~-~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i  107 (434)
T PHA02874         30 ISVDETTTPLIDAIRSGDAKIVELFIKH-GADINHI-NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI  107 (434)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence            5577899999999999999999999986 8888876 889999999999999999999999873                


Q ss_pred             -----CchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccC
Q 007677           89 -----SAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLK  162 (593)
Q Consensus        89 -----~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~  162 (593)
                           .+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..
T Consensus       108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~  186 (434)
T PHA02874        108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK  186 (434)
T ss_pred             HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC
Confidence                 13456788999999999999999999999999999997 7899999999999999999999999999998 7888


Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHH
Q 007677          163 DDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIW  242 (593)
Q Consensus       163 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  242 (593)
                      +..|.||||.|+..|+.++++.|++. +...+.++..|.||||.|+..+.           +.+..|+ .+++++.    
T Consensus       187 ~~~g~tpL~~A~~~g~~~iv~~Ll~~-g~~i~~~~~~g~TpL~~A~~~~~-----------~~i~~Ll-~~~~in~----  249 (434)
T PHA02874        187 DNNGESPLHNAAEYGDYACIKLLIDH-GNHIMNKCKNGFTPLHNAIIHNR-----------SAIELLI-NNASIND----  249 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCcCCCCCCCCHHHHHHHCCh-----------HHHHHHH-cCCCCCC----
Confidence            99999999999999999999999998 55667889999999999998764           4555555 4555554    


Q ss_pred             HHhhcchhHHHHHHHcC-cHHHHHHHHHHCCCccccccCCCCchHHHHHHHcC-chhHHHHHhcccCccccccccccCCC
Q 007677          243 ELIEQPRELIHDAADRG-NVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNR-LEDLFKFIYDIKPIADLMVDCTDEKG  320 (593)
Q Consensus       243 ~~~~~g~tpLh~Aa~~g-~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~-~~~iv~~Ll~~~~~~~~lin~~D~~G  320 (593)
                       +|..|.||||+|+..+ +.+++++|+++|+++ +.+|.. |+||||+|++++ +.++++.|+..+..    ++..+..+
T Consensus       250 -~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~-n~~d~~-g~TpL~~A~~~~~~~~~ik~ll~~~~~----~~~~~~~~  322 (434)
T PHA02874        250 -QDIDGSTPLHHAINPPCDIDIIDILLYHKADI-SIKDNK-GENPIDTAFKYINKDPVIKDIIANAVL----IKEADKLK  322 (434)
T ss_pred             -cCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCC-CCCCCC-CCCHHHHHHHhCCccHHHHHHHHhcCc----hhhccccc
Confidence             4488999999999876 789999999999999 899999 999999999987 78899999998765    34444444


Q ss_pred             -CchhHhhhhhCC
Q 007677          321 -NNILHLAGELAP  332 (593)
Q Consensus       321 -~T~LH~A~~~~~  332 (593)
                       .+++..+.....
T Consensus       323 ~~~~~~~~~i~~~  335 (434)
T PHA02874        323 DSDFLEHIEIKDN  335 (434)
T ss_pred             hhHHHHHHHHhcc
Confidence             455666554443

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.3e-38  Score=335.43  Aligned_cols=280  Identities=16%  Similarity=0.148  Sum_probs=250.0

Q ss_pred             hHHHHHHhhhhccccCCCccccccchHhHHHHHcC---CHHHHHHHHhhCccccccccCCCCCcHHHHHHHcC-CHHHHH
Q 007677            7 LSKQLKEDKRKESDEQLPAETITRRLKLYRAALNG---DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEAN-RIDFVK   82 (593)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g-~~~~v~   82 (593)
                      ..+.++.+.+.+.+.+  .++..|.||||.|+..|   +.++++.|++. |++++.+ +..|.||||+|+..| +.++++
T Consensus        26 ~~~~v~~Ll~~ga~vn--~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-Gadin~~-~~~g~TpLh~A~~~~~~~~iv~  101 (471)
T PHA03095         26 TVEEVRRLLAAGADVN--FRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-GADVNAP-ERCGFTPLHLYLYNATTLDVIK  101 (471)
T ss_pred             CHHHHHHHHHcCCCcc--cCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCcHHHHH
Confidence            4556666666665544  77889999999999999   99999999986 8999988 889999999999999 599999


Q ss_pred             HHHHcCCchhhhchhcCCChHHHHHH--HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC--CHHHHHHHHHhcc
Q 007677           83 KLLKRMSAEDLAKQNKIGCTAVFYAV--ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG--RTEVVEFLYRETK  158 (593)
Q Consensus        83 ~Ll~~~~~~~~~~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~  158 (593)
                      +|+++  |++++.+|..|+||||+|+  ..++.+++++|+++|+++ +.+|..|.||||+|+..+  +.+++++|+++++
T Consensus       102 lLl~~--ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~  178 (471)
T PHA03095        102 LLIKA--GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGA  178 (471)
T ss_pred             HHHHc--CCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence            99999  8999999999999999999  567899999999999996 889999999999999876  6899999999998


Q ss_pred             -cccCCcchhHHHHHHHHc--CCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHh
Q 007677          159 -NSLKDDDCIELLVQLIET--GLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVIL  235 (593)
Q Consensus       159 -~~~~~~~g~t~L~~A~~~--~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~  235 (593)
                       ....+..|.||||.++..  +..++++.|++. +..++.+|..|.||||+|+..++.        ...+++.+++.|++
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~-g~~~~~~d~~g~tpLh~Aa~~~~~--------~~~~v~~ll~~g~d  249 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPLHSMATGSSC--------KRSLVLPLLIAGIS  249 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCc--------hHHHHHHHHHcCCC
Confidence             555689999999999875  678889888887 677889999999999999998761        13577888899988


Q ss_pred             cChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcc
Q 007677          236 LSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIA  309 (593)
Q Consensus       236 ~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  309 (593)
                      ++..+     ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.++++.|++.+++.
T Consensus       250 in~~d-----~~g~TpLh~A~~~~~~~~v~~LL~~gad~-n~~~~~-g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        250 INARN-----RYGQTPLHYAAVFNNPRACRRLIALGADI-NAVSSD-GNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CCCcC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCC-CCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            87655     78999999999999999999999999999 899999 999999999999999999999998883

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.9e-37  Score=334.78  Aligned_cols=341  Identities=13%  Similarity=0.057  Sum_probs=237.7

Q ss_pred             hHHHHHHhhhhccccCCCccccccchHhHHHHHc---CCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHH----
Q 007677            7 LSKQLKEDKRKESDEQLPAETITRRLKLYRAALN---GDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRID----   79 (593)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~----   79 (593)
                      ..+.++++...+.+.  ..+|.+|+||||.|+..   |+.++|+.|++. |++++.+ +..|.||||.|+..|+.+    
T Consensus        11 ~~~~~~~l~~~~~~~--~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~-ga~v~~~-~~~g~TpL~~Aa~~g~~~v~~~   86 (661)
T PHA02917         11 ALDELKQMLRDRDPN--DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDS-GTNPLHK-NWRQLTPLEEYTNSRHVKVNKD   86 (661)
T ss_pred             HHHHHHHHHhccCcc--cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHC-CCCcccc-CCCCCCHHHHHHHcCChhHHHH
Confidence            455566666544433  37799999999997555   889999999985 8999877 899999999999999854    


Q ss_pred             HHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--HcCCHHHHHHHHHhc
Q 007677           80 FVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA--SLGRTEVVEFLYRET  157 (593)
Q Consensus        80 ~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~  157 (593)
                      +++.|++.. + ..+..+  ..+++|.|+.+|+.|+|++|+++|+++ +.+|.+|.||||.|+  ..|+.+++++|+++|
T Consensus        87 ~~~~Ll~~~-~-~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~G  161 (661)
T PHA02917         87 IAMALLEAT-G-YSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENG  161 (661)
T ss_pred             HHHHHHhcc-C-CCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcC
Confidence            456676652 2 123322  236677788888888888888888886 777888888887543  467888888888888


Q ss_pred             c-cccCC---cch-----------hHHHHHHHH-----------cCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcC
Q 007677          158 K-NSLKD---DDC-----------IELLVQLIE-----------TGLYAVALQLLHDHRYLATKRAKNKETALHVLARKN  211 (593)
Q Consensus       158 ~-~~~~~---~~g-----------~t~L~~A~~-----------~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~  211 (593)
                      + .+..|   ..|           .||||+|+.           .++.++++.|++. +.+++.+|.+|.||||+|+..+
T Consensus       162 a~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~-Gadvn~~d~~G~TpLh~A~~~g  240 (661)
T PHA02917        162 CSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH-GIKPSSIDKNYCTALQYYIKSS  240 (661)
T ss_pred             CCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC-CCCcccCCCCCCcHHHHHHHcC
Confidence            7 43322   223           488888865           3567888888877 6777788888888888888777


Q ss_pred             CCcc-------------------------------------cccchhHHHHHHHHHHHHHhcCh-----------HHHH-
Q 007677          212 LGDK-------------------------------------DRKNKEAETLVESLWEEVILLSK-----------QEIW-  242 (593)
Q Consensus       212 ~~~~-------------------------------------~~~~~~~~~~~~~L~~~~~~~~~-----------~~~~-  242 (593)
                      +.+.                                     ........++++.|++.|++.+.           .+.. 
T Consensus       241 ~~~~eivk~Li~g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~  320 (661)
T PHA02917        241 HIDIDIVKLLMKGIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETIS  320 (661)
T ss_pred             CCcHHHHHHHHhCCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHH
Confidence            5210                                     00001145778888888865321           0000 


Q ss_pred             --HHhhcchhHHHHHH---HcCc--HHHHHHHHHHCCCcc-----------------------------ccccCCCCchH
Q 007677          243 --ELIEQPRELIHDAA---DRGN--VQFLSILIREYPDLM-----------------------------WKADKKDNYTI  286 (593)
Q Consensus       243 --~~~~~g~tpLh~Aa---~~g~--~~~v~~Ll~~~~~~~-----------------------------~~~d~~~g~t~  286 (593)
                        -....+.+++|.+.   ..|.  .++++.|+++|+++.                             ...+.. |+||
T Consensus       321 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~-G~Tp  399 (661)
T PHA02917        321 LILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDD-GEIP  399 (661)
T ss_pred             HHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCC-CCCh
Confidence              01223455555433   4565  458888888877541                             223556 9999


Q ss_pred             HHHHHHcC-----------------------chhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccCch
Q 007677          287 FHIAVKNR-----------------------LEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSA  343 (593)
Q Consensus       287 Lh~Av~~~-----------------------~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~~  343 (593)
                      ||.|++.+                       ..+++++|+++|++    +|.+|..|+||||+|+..++.++++.|    
T Consensus       400 L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd----IN~kd~~G~TpLh~Aa~~~~~~~v~~L----  471 (661)
T PHA02917        400 IGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKD----INMIDKRGETLLHKAVRYNKQSLVSLL----  471 (661)
T ss_pred             hHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCC----CCCCCCCCcCHHHHHHHcCCHHHHHHH----
Confidence            99987543                       25678999999998    889999999999999988775544332    


Q ss_pred             HhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhH
Q 007677          344 LQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSK  381 (593)
Q Consensus       344 l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~  381 (593)
                                     +-.|++++.+|..|+||+++|..
T Consensus       472 ---------------l~~GAdin~~d~~G~T~L~~A~~  494 (661)
T PHA02917        472 ---------------LESGSDVNIRSNNGYTCIAIAIN  494 (661)
T ss_pred             ---------------HHCcCCCCCCCCCCCCHHHHHHH
Confidence                           23788999999999999999974

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=332.94  Aligned_cols=261  Identities=19%  Similarity=0.195  Sum_probs=163.6

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHH-----HHHcCCHHHHHHHHHcCCchhhhchhcC
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHV-----AAEANRIDFVKKLLKRMSAEDLAKQNKI   99 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~   99 (593)
                      ..+..+.||||.|+..|+.++|+.|++. |.+++.. +..|.||||+     |+..|+.+++++|++.  |++++..|..
T Consensus        30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~~-g~~~~~~-~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~--ga~i~~~d~~  105 (480)
T PHA03100         30 YSYKKPVLPLYLAKEARNIDVVKILLDN-GADINSS-TKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY--GANVNAPDNN  105 (480)
T ss_pred             hhhcccchhhhhhhccCCHHHHHHHHHc-CCCCCCc-cccCcCHHHHHHHHHHHhhchHHHHHHHHHC--CCCCCCCCCC
Confidence            4455666777777777777777766665 5666654 5566677777     7777777777777766  6666666666


Q ss_pred             CChHHHHHH--HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC--CHHHHHHHHHhcc-cccCCcchhHHHHHHH
Q 007677          100 GCTAVFYAV--ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG--RTEVVEFLYRETK-NSLKDDDCIELLVQLI  174 (593)
Q Consensus       100 g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~  174 (593)
                      |.||||+|+  ..|+.+++++|+++|+++ +..+..|.||||+|+..|  +.+++++|+++|+ .+..+..|.||||.|+
T Consensus       106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        106 GITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            777777777  667777777777776665 566666777777777766  6677777776666 5555556666666666


Q ss_pred             HcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHH
Q 007677          175 ETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHD  254 (593)
Q Consensus       175 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~  254 (593)
                      ..|+.++++.|++. +...+..+..|.+|+|+                                          .||||.
T Consensus       185 ~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~~~~------------------------------------------~t~l~~  221 (480)
T PHA03100        185 EKGNIDVIKFLLDN-GADINAGDIETLLFTIF------------------------------------------ETPLHI  221 (480)
T ss_pred             HhCCHHHHHHHHHc-CCCccCCCCCCCcHHHH------------------------------------------HhHHHH
Confidence            66666666666665 34444555555222211                                          456666


Q ss_pred             HHHcCc--HHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCC
Q 007677          255 AADRGN--VQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAP  332 (593)
Q Consensus       255 Aa~~g~--~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~  332 (593)
                      |+..|+  .+++++|+++|.++ +.+|.. |+||||+|+..|+.+++++|++.|++    ++.+|..|+||||+|++.++
T Consensus       222 a~~~~~~~~~iv~~Ll~~g~di-n~~d~~-g~TpL~~A~~~~~~~iv~~Ll~~gad----~n~~d~~g~tpl~~A~~~~~  295 (480)
T PHA03100        222 AACYNEITLEVVNYLLSYGVPI-NIKDVY-GFTPLHYAVYNNNPEFVKYLLDLGAN----PNLVNKYGDTPLHIAILNNN  295 (480)
T ss_pred             HHHhCcCcHHHHHHHHHcCCCC-CCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCcHHHHHHHhCC
Confidence            666666  66666666666555 455555 66666666666666666666666655    55566666666666666555


Q ss_pred             Ccccccc
Q 007677          333 QHRLNVV  339 (593)
Q Consensus       333 ~~~~~~l  339 (593)
                      .++++.+
T Consensus       296 ~~iv~~L  302 (480)
T PHA03100        296 KEIFKLL  302 (480)
T ss_pred             HHHHHHH
Confidence            5544433

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-37  Score=331.14  Aligned_cols=252  Identities=20%  Similarity=0.215  Sum_probs=226.4

Q ss_pred             HHHHHHhhhhccccCCCccccccchHhHH-----HHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHH--HcCCHHH
Q 007677            8 SKQLKEDKRKESDEQLPAETITRRLKLYR-----AALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAA--EANRIDF   80 (593)
Q Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa--~~g~~~~   80 (593)
                      .+.++.+...+.+..  ..+..+.||||.     |+..|+.++++.|++. |++++.. +..|.||||+|+  ..|+.++
T Consensus        48 ~~ivk~Ll~~g~~~~--~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~-ga~i~~~-d~~g~tpL~~A~~~~~~~~~i  123 (480)
T PHA03100         48 IDVVKILLDNGADIN--SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAP-DNNGITPLLYAISKKSNSYSI  123 (480)
T ss_pred             HHHHHHHHHcCCCCC--CccccCcCHHHHHHHHHHHhhchHHHHHHHHHC-CCCCCCC-CCCCCchhhHHHhcccChHHH
Confidence            345555555554443  668889999999     9999999999999986 7888776 899999999999  9999999


Q ss_pred             HHHHHHcCCchhhhchhcCCChHHHHHHHcC--CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677           81 VKKLLKRMSAEDLAKQNKIGCTAVFYAVASE--SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus        81 v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      |++|+++  |++++.+|..|.||||+|+..|  +.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++|+
T Consensus       124 v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  200 (480)
T PHA03100        124 VEYLLDN--GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGA  200 (480)
T ss_pred             HHHHHHc--CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            9999999  8999999999999999999999  999999999999997 7888899999999999999999999999998


Q ss_pred             -cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcC
Q 007677          159 -NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS  237 (593)
Q Consensus       159 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~  237 (593)
                       .+..+..|.++++.                            .||||.|+..++        ...++++.|++.|++++
T Consensus       201 ~~~~~~~~~~~~~~~----------------------------~t~l~~a~~~~~--------~~~~iv~~Ll~~g~din  244 (480)
T PHA03100        201 DINAGDIETLLFTIF----------------------------ETPLHIAACYNE--------ITLEVVNYLLSYGVPIN  244 (480)
T ss_pred             CccCCCCCCCcHHHH----------------------------HhHHHHHHHhCc--------CcHHHHHHHHHcCCCCC
Confidence             77778888887776                            789999998764        12689999999999887


Q ss_pred             hHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcc
Q 007677          238 KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIA  309 (593)
Q Consensus       238 ~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  309 (593)
                      ..+     ..|.||||.|+..|+.+++++|+++|+++ +.+|.. |+||+|+|+++++.+++++|+++|++.
T Consensus       245 ~~d-----~~g~TpL~~A~~~~~~~iv~~Ll~~gad~-n~~d~~-g~tpl~~A~~~~~~~iv~~Ll~~g~~i  309 (480)
T PHA03100        245 IKD-----VYGFTPLHYAVYNNNPEFVKYLLDLGANP-NLVNKY-GDTPLHIAILNNNKEIFKLLLNNGPSI  309 (480)
T ss_pred             CCC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC-CCcHHHHHHHhCCHHHHHHHHhcCCCH
Confidence            655     78999999999999999999999999998 889999 999999999999999999999999983

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.2e-36  Score=325.53  Aligned_cols=290  Identities=14%  Similarity=0.105  Sum_probs=239.4

Q ss_pred             hHHHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 007677            7 LSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK   86 (593)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~   86 (593)
                      ..+.+..+.......  ...+..+.||||.||..|+.++|+.|+++ |++++.+ |..|.||||+||..|+.++++.|++
T Consensus        16 i~~~i~~~~~~~~~~--~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~-gadvn~~-d~~g~TpLh~A~~~g~~~~v~~Ll~   91 (477)
T PHA02878         16 ILKYIEYIDHTENYS--TSASLIPFIPLHQAVEARNLDVVKSLLTR-GHNVNQP-DHRDLTPLHIICKEPNKLGMKEMIR   91 (477)
T ss_pred             HHHHHHHHhhhhhhc--CcccccCcchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHCccHhHHHHHHH
Confidence            344444443333322  23466789999999999999999999986 8899987 9999999999999999999999999


Q ss_pred             cCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHHHHhcc-cccCC
Q 007677           87 RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL--GRTEVVEFLYRETK-NSLKD  163 (593)
Q Consensus        87 ~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~-~~~~~  163 (593)
                      .  +...+.  ..+.+|+|.|+..|+.++++.|+..+.+.....+   ...+..+...  .+.+++++|+++|+ .+..+
T Consensus        92 ~--~~~~~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~  164 (477)
T PHA02878         92 S--INKCSV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKD  164 (477)
T ss_pred             H--Hhcccc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccC
Confidence            8  333332  5678999999999999999999987644211111   1111111112  23569999999999 77788


Q ss_pred             cc-hhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHH
Q 007677          164 DD-CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIW  242 (593)
Q Consensus       164 ~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~  242 (593)
                      .. |.||||.|+..|+.++++.|++. +..++.+|..|.||||+|+..++          .++++.|++.|++++..+  
T Consensus       165 ~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g~tpLh~A~~~~~----------~~iv~~Ll~~ga~in~~d--  231 (477)
T PHA02878        165 RHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTNNSPLHHAVKHYN----------KPIVHILLENGASTDARD--  231 (477)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCC----------HHHHHHHHHcCCCCCCCC--
Confidence            88 99999999999999999999997 67778899999999999999998          899999999999888655  


Q ss_pred             HHhhcchhHHHHHHHc-CcHHHHHHHHHHCCCccccccC-CCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCC
Q 007677          243 ELIEQPRELIHDAADR-GNVQFLSILIREYPDLMWKADK-KDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKG  320 (593)
Q Consensus       243 ~~~~~g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d~-~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G  320 (593)
                         ..|.||||+|+.. ++.++++.|+++|+++ +..+. . |+||||+|  .++.+++++|++.|++    +|.+|..|
T Consensus       232 ---~~g~TpLh~A~~~~~~~~iv~~Ll~~gadv-n~~~~~~-g~TpLh~A--~~~~~~v~~Ll~~gad----in~~d~~g  300 (477)
T PHA02878        232 ---KCGNTPLHISVGYCKDYDILKLLLEHGVDV-NAKSYIL-GLTALHSS--IKSERKLKLLLEYGAD----INSLNSYK  300 (477)
T ss_pred             ---CCCCCHHHHHHHhcCCHHHHHHHHHcCCCC-CccCCCC-CCCHHHHH--ccCHHHHHHHHHCCCC----CCCcCCCC
Confidence               7899999999976 7899999999999999 66665 6 99999999  5778999999999999    88999999


Q ss_pred             CchhHhhhhhC
Q 007677          321 NNILHLAGELA  331 (593)
Q Consensus       321 ~T~LH~A~~~~  331 (593)
                      +||||+|++.+
T Consensus       301 ~TpL~~A~~~~  311 (477)
T PHA02878        301 LTPLSSAVKQY  311 (477)
T ss_pred             CCHHHHHHHHc
Confidence            99999999854

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-36  Score=323.92  Aligned_cols=299  Identities=17%  Similarity=0.165  Sum_probs=240.2

Q ss_pred             hHHHHHcCCHHHHHHHHhhC---ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHc
Q 007677           34 LYRAALNGDWAVAKDIYDKY---EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS  110 (593)
Q Consensus        34 Lh~Aa~~g~~~~v~~Ll~~~---~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~  110 (593)
                      |+.+....+.+.+...++..   +...+.. +..+.||||+|++.|+.++|++|+++  |++++.+|..|.||||+||..
T Consensus         4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~-~~~~~tPLh~A~~~g~~e~vk~Ll~~--gadvn~~d~~g~TpLh~A~~~   80 (477)
T PHA02878          4 LYKSMYTDNYETILKYIEYIDHTENYSTSA-SLIPFIPLHQAVEARNLDVVKSLLTR--GHNVNQPDHRDLTPLHIICKE   80 (477)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhhhhhcCcc-cccCcchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHC
Confidence            66777777765555555541   2112222 45789999999999999999999999  899999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcC--CHHHHHHHHHh
Q 007677          111 ESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG--LYAVALQLLHD  188 (593)
Q Consensus       111 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~  188 (593)
                      |+.++++.|++.+... ..  ..+.+|++.|+..++.+++++|+..+.....+.+. ..+......+  ..++++.|++.
T Consensus        81 g~~~~v~~Ll~~~~~~-~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~iv~~Ll~~  156 (477)
T PHA02878         81 PNKLGMKEMIRSINKC-SV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDL-VYIDKKSKDDIIEAEITKLLLSY  156 (477)
T ss_pred             ccHhHHHHHHHHHhcc-cc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcH-HHHhhccchhhHHHHHHHHHHHc
Confidence            9999999999987664 22  56889999999999999999999875411111111 1111111112  23588888887


Q ss_pred             cchhhhccccC-CccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHH
Q 007677          189 HRYLATKRAKN-KETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSIL  267 (593)
Q Consensus       189 ~~~~~~~~d~~-g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L  267 (593)
                       +.+++.+|.+ |.||||+|+..++          .++++.|++.|++++..+     ..|.||||.|++.|+.++++.|
T Consensus       157 -gadin~~~~~~g~tpLh~A~~~~~----------~~iv~~Ll~~gad~n~~d-----~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        157 -GADINMKDRHKGNTALHYATENKD----------QRLTELLLSYGANVNIPD-----KTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             -CCCCCccCCCCCCCHHHHHHhCCC----------HHHHHHHHHCCCCCCCcC-----CCCCCHHHHHHHhCCHHHHHHH
Confidence             6778888888 9999999999998          999999999999887654     7899999999999999999999


Q ss_pred             HHHCCCccccccCCCCchHHHHHHHc-CchhHHHHHhcccCccccccccccC-CCCchhHhhhhhCCCcccccccCchHh
Q 007677          268 IREYPDLMWKADKKDNYTIFHIAVKN-RLEDLFKFIYDIKPIADLMVDCTDE-KGNNILHLAGELAPQHRLNVVSGSALQ  345 (593)
Q Consensus       268 l~~~~~~~~~~d~~~g~t~Lh~Av~~-~~~~iv~~Ll~~~~~~~~lin~~D~-~G~T~LH~A~~~~~~~~~~~l~~~~l~  345 (593)
                      +++|+++ +.+|.. |+||||+|+.. ++.+++++|+++|++    +|.++. .|+||||+|+  ++.++++.|      
T Consensus       221 l~~ga~i-n~~d~~-g~TpLh~A~~~~~~~~iv~~Ll~~gad----vn~~~~~~g~TpLh~A~--~~~~~v~~L------  286 (477)
T PHA02878        221 LENGAST-DARDKC-GNTPLHISVGYCKDYDILKLLLEHGVD----VNAKSYILGLTALHSSI--KSERKLKLL------  286 (477)
T ss_pred             HHcCCCC-CCCCCC-CCCHHHHHHHhcCCHHHHHHHHHcCCC----CCccCCCCCCCHHHHHc--cCHHHHHHH------
Confidence            9999999 789999 99999999976 789999999999998    778876 8999999994  333322221      


Q ss_pred             hHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhHH
Q 007677          346 MQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKE  382 (593)
Q Consensus       346 ~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~  382 (593)
                                   +-.|++++.+|.+|.||+++|.+.
T Consensus       287 -------------l~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        287 -------------LEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             -------------HHCCCCCCCcCCCCCCHHHHHHHH
Confidence                         227899999999999999999763

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-35  Score=314.44  Aligned_cols=281  Identities=17%  Similarity=0.219  Sum_probs=223.7

Q ss_pred             HhHHHHH---cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677           33 KLYRAAL---NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEA--NRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA  107 (593)
Q Consensus        33 ~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A  107 (593)
                      +||.-+.   ..+.+.++.|++. |.+++.+  ..|.||||.++..  ++.++|++|+++  |+++|.++ .+.||||.|
T Consensus         3 ~l~~y~~~~~~~~~~~v~~LL~~-GadvN~~--~~g~t~l~~~~~~~~~~~~iv~~Ll~~--GAdvn~~~-~~~tpL~~a   76 (494)
T PHA02989          3 SLYEYILYSDTVDKNALEFLLRT-GFDVNEE--YRGNSILLLYLKRKDVKIKIVKLLIDN--GADVNYKG-YIETPLCAV   76 (494)
T ss_pred             HHHHHHHcCCcCcHHHHHHHHHc-CCCcccc--cCCCCHHHHHHhcCCCChHHHHHHHHc--CCCccCCC-CCCCcHHHH
Confidence            4555443   4778999988876 8888876  4688888776554  368999999998  88888876 578999988


Q ss_pred             HHcC------CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc---CCHHHHHHHHHhcc-c-ccCCcchhHHHHHHHHc
Q 007677          108 VASE------SVELVKATMKGNEGIATLPDNDGMLPIVRAASL---GRTEVVEFLYRETK-N-SLKDDDCIELLVQLIET  176 (593)
Q Consensus       108 ~~~g------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~-~-~~~~~~g~t~L~~A~~~  176 (593)
                      +.++      +.+++++|+++|+++ +.+|..|.||||.|+..   |+.+++++|+++|+ . +..+..|.||||.|+..
T Consensus        77 ~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         77 LRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             HhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHh
Confidence            7654      468999999999996 78889999999988765   67899999999998 6 67888999999988764


Q ss_pred             --CCHHHHHHHHHhcchhhhc-cccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHH
Q 007677          177 --GLYAVALQLLHDHRYLATK-RAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIH  253 (593)
Q Consensus       177 --~~~~~v~~Ll~~~~~~~~~-~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh  253 (593)
                        ++.++++.|++. +.+++. .+..|.||||.|+..+.      .....+++++|++.|++++..+     ..|.||||
T Consensus       156 ~~~~~~iv~~Ll~~-Gadi~~~~~~~g~tpL~~a~~~~~------~~~~~~iv~~Ll~~Ga~vn~~~-----~~~~t~l~  223 (494)
T PHA02989        156 FSVKKDVIKILLSF-GVNLFEKTSLYGLTPMNIYLRNDI------DVISIKVIKYLIKKGVNIETNN-----NGSESVLE  223 (494)
T ss_pred             ccCCHHHHHHHHHc-CCCccccccccCCChHHHHHhccc------ccccHHHHHHHHhCCCCccccC-----CccccHHH
Confidence              578999999987 455555 67789999998876641      0112789999999998887654     56789998


Q ss_pred             HHHHc------CcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhh
Q 007677          254 DAADR------GNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA  327 (593)
Q Consensus       254 ~Aa~~------g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A  327 (593)
                      .++..      +..+++++|++ ++++ +.+|.. |+||||+|+..|+.+++++|++.|++    +|.+|..|+||||+|
T Consensus       224 ~~~~~~~~~~~~~~~il~~l~~-~adv-n~~d~~-G~TpL~~Aa~~~~~~~v~~LL~~Gad----in~~d~~G~TpL~~A  296 (494)
T PHA02989        224 SFLDNNKILSKKEFKVLNFILK-YIKI-NKKDKK-GFNPLLISAKVDNYEAFNYLLKLGDD----IYNVSKDGDTVLTYA  296 (494)
T ss_pred             HHHHhchhhcccchHHHHHHHh-CCCC-CCCCCC-CCCHHHHHHHhcCHHHHHHHHHcCCC----ccccCCCCCCHHHHH
Confidence            77654      34677776654 6777 788988 99999999999999999999999998    788999999999999


Q ss_pred             hhhCCCcccccc
Q 007677          328 GELAPQHRLNVV  339 (593)
Q Consensus       328 ~~~~~~~~~~~l  339 (593)
                      ++.++.++++.+
T Consensus       297 ~~~~~~~iv~~L  308 (494)
T PHA02989        297 IKHGNIDMLNRI  308 (494)
T ss_pred             HHcCCHHHHHHH
Confidence            999987766544

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-35  Score=307.09  Aligned_cols=248  Identities=15%  Similarity=0.147  Sum_probs=192.8

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      .+++||.|+..|+.++++.|++. |.+++.+ +..|.||||+|+..|+.++|++|+++  |++++.++..+.||||.|+.
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~-g~~~n~~-~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~t~L~~A~~   77 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDI-GINPNFE-IYDGISPIKLAMKFRDSEAIKLLMKH--GAIPDVKYPDIESELHDAVE   77 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHC-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccCCCcccHHHHHHH
Confidence            46788888888888888888875 7777766 66788888888888888888888887  67777777778888888888


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677          110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDH  189 (593)
Q Consensus       110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  189 (593)
                      .|+.++++.|++.|+......+.+|.||||+|+..|+.+++++|++.|+                               
T Consensus        78 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~ga-------------------------------  126 (413)
T PHA02875         78 EGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGA-------------------------------  126 (413)
T ss_pred             CCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCC-------------------------------
Confidence            8888888888888877656667778888888888888888888887765                               


Q ss_pred             chhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHH
Q 007677          190 RYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIR  269 (593)
Q Consensus       190 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~  269 (593)
                        +++.++..|.||||+|+..++          .++++.|++.|++++..+     ..|.||||+|+..|+.+++++|++
T Consensus       127 --d~~~~~~~g~tpLh~A~~~~~----------~~~v~~Ll~~g~~~~~~d-----~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        127 --DPDIPNTDKFSPLHLAVMMGD----------IKGIELLIDHKACLDIED-----CCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             --CCCCCCCCCCCHHHHHHHcCC----------HHHHHHHHhcCCCCCCCC-----CCCCCHHHHHHHcCCHHHHHHHHh
Confidence              223344555566666665555          556666666655555433     677899999999999999999999


Q ss_pred             HCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhC
Q 007677          270 EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELA  331 (593)
Q Consensus       270 ~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~  331 (593)
                      +|+++ +..+...+.||+|+|+..|+.+++++|+++|++.+. +...|.+|.|||+++....
T Consensus       190 ~ga~~-n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~-~~~~~~~~~t~l~~~~~~~  249 (413)
T PHA02875        190 SGANI-DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI-MFMIEGEECTILDMICNMC  249 (413)
T ss_pred             CCCCC-CcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch-HhhcCCCchHHHHHHHhhc
Confidence            99999 666666246899999999999999999999999664 4456889999999987654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=283.48  Aligned_cols=232  Identities=13%  Similarity=0.100  Sum_probs=142.6

Q ss_pred             CCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHH
Q 007677           41 GDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM  120 (593)
Q Consensus        41 g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  120 (593)
                      ++.+.++.|++. ++.  .. |.+|+||||+|+..|+.++++.|++.  +++++.++  |+||||+|+..|+.+++++|+
T Consensus        10 ~~~~~~~~Lis~-~a~--~~-D~~G~TpLh~Aa~~g~~eiv~~Ll~~--ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791         10 KSKQLKSFLSSK-DAF--KA-DVHGHSALYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             CHHHHHHHHHhC-CCC--CC-CCCCCcHHHHHHHcCCHHHHHHHHHC--cCCCcCCC--CCCHHHHHHHCCCHHHHHHHH
Confidence            344445544443 332  22 55555555555555555555555555  44444432  455555555555555555555


Q ss_pred             hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcch-hHHHHHHHHcCCHHHHHHHHHhcchhhhccc-
Q 007677          121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDC-IELLVQLIETGLYAVALQLLHDHRYLATKRA-  197 (593)
Q Consensus       121 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d-  197 (593)
                      +.|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..| .||||.|+..|+.++++.|+++.+..   .| 
T Consensus        82 ~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~  157 (284)
T PHA02791         82 FSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDL  157 (284)
T ss_pred             HCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---ccc
Confidence            555554 4555555555555555555555555555555 33344444 35555555555555555555543221   12 


Q ss_pred             cCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhH-HHHHHHcCcHHHHHHHHHHCCCccc
Q 007677          198 KNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPREL-IHDAADRGNVQFLSILIREYPDLMW  276 (593)
Q Consensus       198 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tp-Lh~Aa~~g~~~~v~~Ll~~~~~~~~  276 (593)
                      ..|.||||+|+..|+          .++++.|++.|++++..+     ..|.|| ||+|+..|+.++++.|+++|+++ +
T Consensus       158 ~~g~TpLh~Aa~~g~----------~eiv~lLL~~gAd~n~~d-----~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i-n  221 (284)
T PHA02791        158 AILLSCIHITIKNGH----------VDMMILLLDYMTSTNTNN-----SLLFIPDIKLAIDNKDLEMLQALFKYDINI-Y  221 (284)
T ss_pred             ccCccHHHHHHHcCC----------HHHHHHHHHCCCCCCccc-----CCCCChHHHHHHHcCCHHHHHHHHHCCCCC-c
Confidence            246788888888877          778888888877766544     556665 88888888899999999888888 7


Q ss_pred             cccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          277 KADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       277 ~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      .+|.. | ++|      ++.|++++|+++..+
T Consensus       222 ~~~~~-~-~~l------~~~e~~~~ll~~~~~  245 (284)
T PHA02791        222 SVNLE-N-VLL------DDAEIAKMIIEKHVE  245 (284)
T ss_pred             cCccc-C-ccC------CCHHHHHHHHHhhhh
Confidence            77776 5 555      777889988887655

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.6e-36  Score=254.31  Aligned_cols=209  Identities=21%  Similarity=0.230  Sum_probs=155.8

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      +.++.+.++.......++.+++..+..++.+.|++|+||||+||..||.++|++|++.. +..++.+|..|+||||.||.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~-nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQP-NVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcC-CCCCCCccccCCchhhhhhh
Confidence            45678888988888899999999887888887889999999999999999999999854 77899999999999999999


Q ss_pred             cCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          110 SESVELVKATMKG-NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       110 ~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      .|+.|+|+.|+.+ |+++ +..+..|.||||||+..|+.+++++|+++++                              
T Consensus        82 ~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga------------------------------  130 (226)
T KOG4412|consen   82 NGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGA------------------------------  130 (226)
T ss_pred             cCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCC------------------------------
Confidence            9999999999999 8886 8899999999999999999999999998875                              


Q ss_pred             cchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHH
Q 007677          189 HRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILI  268 (593)
Q Consensus       189 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll  268 (593)
                         .++.+|..|.||||-|+..|.          ++++++|++.++.+|.++     ..|+||||.|...|+.++...|+
T Consensus       131 ---~i~~kD~~~qtplHRAAavGk----------lkvie~Li~~~a~~n~qD-----k~G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  131 ---LIRIKDKQGQTPLHRAAAVGK----------LKVIEYLISQGAPLNTQD-----KYGFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             ---CCcccccccCchhHHHHhccc----------hhhHHHHHhcCCCCCccc-----ccCccHHHHHHhccCchHHHHHH
Confidence               233455555555555554444          444444444444333332     44444444444444555555555


Q ss_pred             HHCCCccccccCCCCchHHHHHH
Q 007677          269 REYPDLMWKADKKDNYTIFHIAV  291 (593)
Q Consensus       269 ~~~~~~~~~~d~~~g~t~Lh~Av  291 (593)
                      ++|++. ...|+. | ||+-.|+
T Consensus       193 ~~gAd~-~~edke-~-t~~~~a~  212 (226)
T KOG4412|consen  193 RAGADT-DREDKE-G-TALRIAC  212 (226)
T ss_pred             Hhccce-eecccc-C-chHHHHH
Confidence            555555 445554 4 5544443

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.3e-34  Score=301.83  Aligned_cols=239  Identities=14%  Similarity=0.107  Sum_probs=188.1

Q ss_pred             HHHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677            8 SKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR   87 (593)
Q Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~   87 (593)
                      .+.++.+.+.+.+.+  .++..|.||||.|+..|+.++++.|++. +++++.. +..+.||||.|+..|+.++|+.|++.
T Consensus        15 ~~iv~~Ll~~g~~~n--~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~   90 (413)
T PHA02875         15 LDIARRLLDIGINPN--FEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVK-YPDIESELHDAVEEGDVKAVEELLDL   90 (413)
T ss_pred             HHHHHHHHHCCCCCC--ccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccc-CCCcccHHHHHHHCCCHHHHHHHHHc
Confidence            345566666665444  6678899999999999999999999986 7777765 78899999999999999999999998


Q ss_pred             CCchhh-hchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcc
Q 007677           88 MSAEDL-AKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDD  165 (593)
Q Consensus        88 ~~~~~~-~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~  165 (593)
                        +... +..+..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++++ .+.    
T Consensus        91 --~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~----  163 (413)
T PHA02875         91 --GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI----  163 (413)
T ss_pred             --CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCC----
Confidence              5543 456778999999999999999999999999996 8899999999999999999999999998876 333    


Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHh
Q 007677          166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELI  245 (593)
Q Consensus       166 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  245 (593)
                                                    +|..|.||||+|+..++          .++++.|++.|++++..+     
T Consensus       164 ------------------------------~d~~g~TpL~~A~~~g~----------~eiv~~Ll~~ga~~n~~~-----  198 (413)
T PHA02875        164 ------------------------------EDCCGCTPLIIAMAKGD----------IAICKMLLDSGANIDYFG-----  198 (413)
T ss_pred             ------------------------------CCCCCCCHHHHHHHcCC----------HHHHHHHHhCCCCCCcCC-----
Confidence                                          45555555555555555          555566666665555433     


Q ss_pred             hc-chhHHHHHHHcCcHHHHHHHHHHCCCcc--ccccCCCCchHHHHHHHc---CchhHHHHHh
Q 007677          246 EQ-PRELIHDAADRGNVQFLSILIREYPDLM--WKADKKDNYTIFHIAVKN---RLEDLFKFIY  303 (593)
Q Consensus       246 ~~-g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~~g~t~Lh~Av~~---~~~~iv~~Ll  303 (593)
                      .. +.||+|+|+..|+.+++++|+++|+++.  ...+.. +.||++.++..   ...+.++.++
T Consensus       199 ~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~-~~t~l~~~~~~~~~~~~~~~~~li  261 (413)
T PHA02875        199 KNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGE-ECTILDMICNMCTNLESEAIDALI  261 (413)
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCC-chHHHHHHHhhcCCcccHHHHHHH
Confidence            23 3588999999999999999999999872  123666 89999987653   3445555554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=1.6e-35  Score=324.43  Aligned_cols=316  Identities=22%  Similarity=0.227  Sum_probs=212.4

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      ..+..|.+|||.++..|+.+.+..+...... -... +..|.||+|.|+..|..+.|+.++.+  +.+++.+++.|.|||
T Consensus       336 aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~-~~~a-~~k~~~pl~la~~~g~~~~v~Lll~~--ga~~~~~gk~gvTpl  411 (1143)
T KOG4177|consen  336 AARTAGYTPLHLAAKEGQVEVAGALLEHGAQ-RRQA-EEKGFTPLHLAVKSGRVSVVELLLEA--GADPNSAGKNGVTPL  411 (1143)
T ss_pred             ccCcCCcccccHhhhhhhHHHHHHhhccccc-cCcc-cccCCcchhhhcccCchhHHHhhhhc--cCCcccCCCCCccee
Confidence            4455555666666655555544433333221 1111 45556666666666666666666655  455566666666666


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC-CHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG-RTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g-~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      |.|+..++.++|+.+++.|++. +.++..|.||+|.|+..| ..+....+++.+. .+...+.|.||||.|...|+.+++
T Consensus       412 h~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~  490 (1143)
T KOG4177|consen  412 HVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVV  490 (1143)
T ss_pred             eehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHH
Confidence            6666666666666666666553 555556666666666665 5555555555555 555556666666666666666665


Q ss_pred             HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677          183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ  262 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  262 (593)
                      ..+++.. ...+...+.|.+++|.+...+.          ....+.++++|++++..+     ..|+||||.|+..|+.+
T Consensus       491 ~llle~~-~~~~~~~~~~l~~lhla~~~~~----------v~~~~~l~~~ga~v~~~~-----~r~~TpLh~A~~~g~v~  554 (1143)
T KOG4177|consen  491 QLLLEGG-ANDNLDAKKGLTPLHLAADEDT----------VKVAKILLEHGANVDLRT-----GRGYTPLHVAVHYGNVD  554 (1143)
T ss_pred             HHhhhcC-CccCccchhccchhhhhhhhhh----------HHHHHHHhhcCCceehhc-----ccccchHHHHHhcCCch
Confidence            5555542 3333444555666666665555          677777788887777665     78899999999999999


Q ss_pred             HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccCc
Q 007677          263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGS  342 (593)
Q Consensus       263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~  342 (593)
                      +|++||++++++ +.+|+. |+||||.|+..|+.+++++|+++|++    +|..|.+|.||||+|++.|+.+++..+-  
T Consensus       555 ~VkfLLe~gAdv-~ak~~~-G~TPLH~Aa~~G~~~i~~LLlk~GA~----vna~d~~g~TpL~iA~~lg~~~~~k~l~--  626 (1143)
T KOG4177|consen  555 LVKFLLEHGADV-NAKDKL-GYTPLHQAAQQGHNDIAELLLKHGAS----VNAADLDGFTPLHIAVRLGYLSVVKLLK--  626 (1143)
T ss_pred             HHHHhhhCCccc-cccCCC-CCChhhHHHHcChHHHHHHHHHcCCC----CCcccccCcchhHHHHHhcccchhhHHH--
Confidence            999999999999 788888 99999999999999999999999999    8999999999999999999988776541  


Q ss_pred             hHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhH
Q 007677          343 ALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSK  381 (593)
Q Consensus       343 ~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~  381 (593)
                                  .+-......+....+.+|.+|.++..+
T Consensus       627 ------------~~~~~~~~~~~~~e~~~g~~p~~v~e~  653 (1143)
T KOG4177|consen  627 ------------VVTATPAATDPVKENRKGAVPEDVAEE  653 (1143)
T ss_pred             ------------hccCccccccchhhhhcccChhhHHHH
Confidence                        000000112256678889999888654

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-34  Score=278.31  Aligned_cols=231  Identities=16%  Similarity=0.168  Sum_probs=199.7

Q ss_pred             HHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 007677           10 QLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS   89 (593)
Q Consensus        10 ~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~   89 (593)
                      ..+.+.+.+.+    .+|.+|+||||.|+..|+.++++.|++. +++++..   +|+||||+|+..|+.++|++|++.  
T Consensus        14 ~~~~Lis~~a~----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~-ga~~n~~---d~~TpLh~Aa~~g~~eiV~lLL~~--   83 (284)
T PHA02791         14 LKSFLSSKDAF----KADVHGHSALYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLFS--   83 (284)
T ss_pred             HHHHHHhCCCC----CCCCCCCcHHHHHHHcCCHHHHHHHHHC-cCCCcCC---CCCCHHHHHHHCCCHHHHHHHHHC--
Confidence            33444444443    4599999999999999999999999986 6777653   479999999999999999999998  


Q ss_pred             chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCC-CCHHHHHHHcCCHHHHHHHHHhcccccCCcchhH
Q 007677           90 AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDG-MLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIE  168 (593)
Q Consensus        90 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t  168 (593)
                      +++++.+|..|+||||+|+..|+.++++.|+++|+++ +.++..| .||||+|+..|+.+++++|+++++.......|.|
T Consensus        84 Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~T  162 (284)
T PHA02791         84 GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLS  162 (284)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCcc
Confidence            8999999999999999999999999999999999997 6677777 4899999999999999999998762222235899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcchhhhccccCCccH-HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhc
Q 007677          169 LLVQLIETGLYAVALQLLHDHRYLATKRAKNKETA-LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQ  247 (593)
Q Consensus       169 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~  247 (593)
                      |||+|+..|+.++++.|++. +..++.+|..|.|| ||+|+..++          .+++++|++.|++++..+     .+
T Consensus       163 pLh~Aa~~g~~eiv~lLL~~-gAd~n~~d~~g~t~~L~~Aa~~~~----------~e~v~lLl~~Ga~in~~~-----~~  226 (284)
T PHA02791        163 CIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD----------LEMLQALFKYDINIYSVN-----LE  226 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCcccCCCCChHHHHHHHcCC----------HHHHHHHHHCCCCCccCc-----cc
Confidence            99999999999999999998 66778899999987 999999999          999999999999998765     33


Q ss_pred             chhHHHHHHHcCcHHHHHHHHHHCCCc
Q 007677          248 PRELIHDAADRGNVQFLSILIREYPDL  274 (593)
Q Consensus       248 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~  274 (593)
                       .+||      |+.|++++||++..+.
T Consensus       227 -~~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        227 -NVLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             -CccC------CCHHHHHHHHHhhhhh
Confidence             3444      8999999999988764

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=303.54  Aligned_cols=281  Identities=14%  Similarity=0.116  Sum_probs=233.3

Q ss_pred             hHHHHHHhhhhccccCCCccccccchHhHHHHHcC--CHHHHHHHHhhCccccccccCCCCCcHHHHHHHcC------CH
Q 007677            7 LSKQLKEDKRKESDEQLPAETITRRLKLYRAALNG--DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEAN------RI   78 (593)
Q Consensus         7 ~~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g------~~   78 (593)
                      -.+..+.+...+.+.+  .+ ..|.||||.++..+  +.++|+.|++. |++++.+ + .+.||||.|+..+      +.
T Consensus        15 ~~~~v~~LL~~GadvN--~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~-GAdvn~~-~-~~~tpL~~a~~~~~~~~~~~~   88 (494)
T PHA02989         15 DKNALEFLLRTGFDVN--EE-YRGNSILLLYLKRKDVKIKIVKLLIDN-GADVNYK-G-YIETPLCAVLRNREITSNKIK   88 (494)
T ss_pred             cHHHHHHHHHcCCCcc--cc-cCCCCHHHHHHhcCCCChHHHHHHHHc-CCCccCC-C-CCCCcHHHHHhccCcchhhHH
Confidence            3455666666666555  44 56899998766553  68999999986 8999976 4 5799999998754      57


Q ss_pred             HHHHHHHHcCCchhhhchhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc--CCHHHHHHH
Q 007677           79 DFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS---ESVELVKATMKGNEGIATLPDNDGMLPIVRAASL--GRTEVVEFL  153 (593)
Q Consensus        79 ~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~iv~~L  153 (593)
                      ++|++|+++  |++++.+|..|.||||.|+..   |+.+++++|+++|+++.+.+|..|.||||+|+..  ++.+++++|
T Consensus        89 ~iv~~Ll~~--Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~L  166 (494)
T PHA02989         89 KIVKLLLKF--GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKIL  166 (494)
T ss_pred             HHHHHHHHC--CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            899999999  899999999999999998765   6899999999999997568899999999999864  689999999


Q ss_pred             HHhcc-ccc-CCcchhHHHHHHHHcC----CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHH
Q 007677          154 YRETK-NSL-KDDDCIELLVQLIETG----LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVE  227 (593)
Q Consensus       154 l~~~~-~~~-~~~~g~t~L~~A~~~~----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~  227 (593)
                      +++|+ .+. .+..|.||||.|+..+    +.++++.|++. +..++.+|..+.|+||.++..+...    .....++++
T Consensus       167 l~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~-Ga~vn~~~~~~~t~l~~~~~~~~~~----~~~~~~il~  241 (494)
T PHA02989        167 LSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK-GVNIETNNNGSESVLESFLDNNKIL----SKKEFKVLN  241 (494)
T ss_pred             HHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhC-CCCccccCCccccHHHHHHHhchhh----cccchHHHH
Confidence            99998 555 5788999999998764    88999999998 6777888889999999887654310    011256666


Q ss_pred             HHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccC
Q 007677          228 SLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKP  307 (593)
Q Consensus       228 ~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  307 (593)
                      ++.+ +++++..+     ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.++++.|++.++
T Consensus       242 ~l~~-~advn~~d-----~~G~TpL~~Aa~~~~~~~v~~LL~~Gadi-n~~d~~-G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        242 FILK-YIKINKKD-----KKGFNPLLISAKVDNYEAFNYLLKLGDDI-YNVSKD-GDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HHHh-CCCCCCCC-----CCCCCHHHHHHHhcCHHHHHHHHHcCCCc-cccCCC-CCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            6554 57766554     88999999999999999999999999999 899999 9999999999999999999999765


Q ss_pred             c
Q 007677          308 I  308 (593)
Q Consensus       308 ~  308 (593)
                      .
T Consensus       314 ~  314 (494)
T PHA02989        314 G  314 (494)
T ss_pred             C
Confidence            4

>PHA02917 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-33  Score=307.01  Aligned_cols=315  Identities=14%  Similarity=0.083  Sum_probs=239.9

Q ss_pred             HHHHHhhhhccccCCCccccccchHhHHHHHcCCHH----HHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHH
Q 007677            9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWA----VAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKL   84 (593)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~L   84 (593)
                      +..+.+.+.+.+..  ..|..|+||||.|+..|+.+    +++.|++..+. .+..   +..+++|.|+..|+.|+|++|
T Consensus        49 ~~v~~Ll~~ga~v~--~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~-~n~~---~~~~~~~~a~~~~~~e~vk~L  122 (661)
T PHA02917         49 EVVKLLLDSGTNPL--HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGY-SNIN---DFNIFSYMKSKNVDVDLIKVL  122 (661)
T ss_pred             HHHHHHHHCCCCcc--ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCC-CCCC---CcchHHHHHhhcCCHHHHHHH
Confidence            44555555555444  77999999999999999854    45666665332 2321   234778889999999999999


Q ss_pred             HHcCCchhhhchhcCCChHHHHHH--HcCCHHHHHHHHhcCCCCCccCC---CCC-----------CCHHHHHHH-----
Q 007677           85 LKRMSAEDLAKQNKIGCTAVFYAV--ASESVELVKATMKGNEGIATLPD---NDG-----------MLPIVRAAS-----  143 (593)
Q Consensus        85 l~~~~~~~~~~~d~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~~g-----------~tpL~~A~~-----  143 (593)
                      +++  |++++.+|..|.||||.|+  ..|+.+++++|+++|+++ +.+|   ..|           .||||+|+.     
T Consensus       123 l~~--Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~  199 (661)
T PHA02917        123 VEH--GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYS  199 (661)
T ss_pred             HHc--CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccc
Confidence            999  8999999999999999654  578999999999999987 3333   234           599999986     


Q ss_pred             ------cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCH--HHHHHHHHhcchhh---hccccCCccHHHHHHhc-
Q 007677          144 ------LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLY--AVALQLLHDHRYLA---TKRAKNKETALHVLARK-  210 (593)
Q Consensus       144 ------~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~---~~~d~~g~t~Lh~a~~~-  210 (593)
                            .++.+++++|+++|+ .+..|.+|.||||.|+..|+.  ++++.|++ +.+..   ...|..|.+|+|+++.. 
T Consensus       200 ~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~  278 (661)
T PHA02917        200 ESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLN  278 (661)
T ss_pred             cccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHH
Confidence                  468999999999999 888999999999999999985  68888865 22221   24566788888888731 


Q ss_pred             ------C--C----------C-cc---c------ccc---------------------------hhHHHHHHHHHHHHHh
Q 007677          211 ------N--L----------G-DK---D------RKN---------------------------KEAETLVESLWEEVIL  235 (593)
Q Consensus       211 ------~--~----------~-~~---~------~~~---------------------------~~~~~~~~~L~~~~~~  235 (593)
                            +  +          . ..   .      ...                           ....++++.|++.|++
T Consensus       279 ~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAd  358 (661)
T PHA02917        279 SDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAV  358 (661)
T ss_pred             hhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCC
Confidence                  1  1          0 00   0      000                           0124588999999997


Q ss_pred             cChHH-------------------------HHHHhhcchhHHHHHHHcC-----------------------cHHHHHHH
Q 007677          236 LSKQE-------------------------IWELIEQPRELIHDAADRG-----------------------NVQFLSIL  267 (593)
Q Consensus       236 ~~~~~-------------------------~~~~~~~g~tpLh~Aa~~g-----------------------~~~~v~~L  267 (593)
                      ++..+                         ....+.+|.||||.|++.+                       ..++++.|
T Consensus       359 vn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L  438 (661)
T PHA02917        359 VNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINIC  438 (661)
T ss_pred             CCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHH
Confidence            66431                         1223556999999987543                       35678999


Q ss_pred             HHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhh-hCCCcccccc
Q 007677          268 IREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE-LAPQHRLNVV  339 (593)
Q Consensus       268 l~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~-~~~~~~~~~l  339 (593)
                      +++|+++ +.+|.. |+||||+|+..++.+++++|++.|++    +|.+|..|+||||+|+. .++.++++.+
T Consensus       439 l~~GAdI-N~kd~~-G~TpLh~Aa~~~~~~~v~~Ll~~GAd----in~~d~~G~T~L~~A~~~~~~~~iv~~L  505 (661)
T PHA02917        439 LPYLKDI-NMIDKR-GETLLHKAVRYNKQSLVSLLLESGSD----VNIRSNNGYTCIAIAINESRNIELLKML  505 (661)
T ss_pred             HHCCCCC-CCCCCC-CcCHHHHHHHcCCHHHHHHHHHCcCC----CCCCCCCCCCHHHHHHHhCCCHHHHHHH
Confidence            9999999 899999 99999999999999999999999999    88999999999999996 5565655544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=4.2e-35  Score=321.26  Aligned_cols=323  Identities=22%  Similarity=0.239  Sum_probs=231.6

Q ss_pred             HHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch
Q 007677           12 KEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE   91 (593)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~   91 (593)
                      ..+.+.+....  ..+..|.||+|.||..+..+..+.|+++ +.++... +....||+|+|.+.|+.++++.+++.  +.
T Consensus       259 ~~l~~~ga~~~--~~~vr~~tplh~AA~~~~~e~~~~ll~~-ga~~~~~-~~~~kt~l~~a~~~g~~~i~~~~l~~--~~  332 (1143)
T KOG4177|consen  259 KLLLQHGASVN--VSTVRGETPLHMAARAGQVEVCKLLLQN-GADVLAK-ARDDQTPLHIASRLGHEEIVHLLLQA--GA  332 (1143)
T ss_pred             HHHHhcccccC--cccccccCcchhhhccchhhhHhhhhcc-Ccccccc-cccccChhhhhcccchHHHHHHHhhc--cC
Confidence            33444443333  4588899999999999999999988886 7777766 77778888888888888888888877  44


Q ss_pred             hhhchhcC---------------------------------CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHH
Q 007677           92 DLAKQNKI---------------------------------GCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPI  138 (593)
Q Consensus        92 ~~~~~d~~---------------------------------g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  138 (593)
                      ..+..+..                                 |.||+|.|+.+|..+++++++.+|.+ ++.++..|.|||
T Consensus       333 ~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~-~~~~gk~gvTpl  411 (1143)
T KOG4177|consen  333 TPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD-PNSAGKNGVTPL  411 (1143)
T ss_pred             CccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHHhhhhccCC-cccCCCCCccee
Confidence            44444444                                 55555555555555555555555555 355555555666


Q ss_pred             HHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcC-CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCccc
Q 007677          139 VRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETG-LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKD  216 (593)
Q Consensus       139 ~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~-~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~  216 (593)
                      |.|+..++..+++.++++++ .+..+..|.|++|.|+..| ..+....+++. +...+..-+.|.||||.|++.|+    
T Consensus       412 h~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh----  486 (1143)
T KOG4177|consen  412 HVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGH----  486 (1143)
T ss_pred             eehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCcchhhhhccCC----
Confidence            66665555555555555555 5555556666666666666 33333333333 55555666666666666666666    


Q ss_pred             ccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCch
Q 007677          217 RKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLE  296 (593)
Q Consensus       217 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~  296 (593)
                            .++++.+.+.++..+...     +.|.+++|.|+..+...+++.++++|.++ +.++.. |.||||+|+.+|+.
T Consensus       487 ------~~~~~llle~~~~~~~~~-----~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r-~~TpLh~A~~~g~v  553 (1143)
T KOG4177|consen  487 ------TEVVQLLLEGGANDNLDA-----KKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGR-GYTPLHVAVHYGNV  553 (1143)
T ss_pred             ------chHHHHhhhcCCccCccc-----hhccchhhhhhhhhhHHHHHHHhhcCCce-ehhccc-ccchHHHHHhcCCc
Confidence                  666666666664444433     56678888888888888888888888888 788888 99999999999999


Q ss_pred             hHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcch
Q 007677          297 DLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPK  376 (593)
Q Consensus       297 ~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl  376 (593)
                      ++|++|+++|++    ++.+|+.|+||||.|+..|+.+++++|                   +-+|+.+|..|.+|.|||
T Consensus       554 ~~VkfLLe~gAd----v~ak~~~G~TPLH~Aa~~G~~~i~~LL-------------------lk~GA~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  554 DLVKFLLEHGAD----VNAKDKLGYTPLHQAAQQGHNDIAELL-------------------LKHGASVNAADLDGFTPL  610 (1143)
T ss_pred             hHHHHhhhCCcc----ccccCCCCCChhhHHHHcChHHHHHHH-------------------HHcCCCCCcccccCcchh
Confidence            999999999999    889999999999999999987766554                   237999999999999999


Q ss_pred             hhhhHH
Q 007677          377 ALFSKE  382 (593)
Q Consensus       377 ~~a~~~  382 (593)
                      ++|...
T Consensus       611 ~iA~~l  616 (1143)
T KOG4177|consen  611 HIAVRL  616 (1143)
T ss_pred             HHHHHh
Confidence            998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.7e-33  Score=273.49  Aligned_cols=181  Identities=19%  Similarity=0.189  Sum_probs=154.6

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccc-------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcC
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE-------ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI   99 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-------~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~   99 (593)
                      +..|.|||.+||++|+.++|++|+++.++++...       .+-+|-+||-.|+..||.|+|+.|+++  ++++|.....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~--ga~VN~tT~T  116 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRR--GASVNDTTRT  116 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHh--cCcccccccc
Confidence            5567799999999999999999999766654332       134678899999999999999999998  7889888888


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCC
Q 007677          100 GCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGL  178 (593)
Q Consensus       100 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~  178 (593)
                      ..|||--||.-|++|+||+|+++|+++ ++.|..|.|.||+|+..||.+++++|++.++ .+.++..|.|+||.|++.|+
T Consensus       117 NStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  117 NSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             CCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc
Confidence            889999999999999999999999996 8899999999999999999999999999998 88888999999999999999


Q ss_pred             HHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677          179 YAVALQLLHDHRYLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       179 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      .|+++.|+.++..  -.+|..|.|||..|+..|+
T Consensus       196 vdivq~Ll~~ga~--i~~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  196 VDIVQLLLKHGAK--IDVDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             HHHHHHHHhCCce--eeecCCCCchHHHHhhhcc
Confidence            9999999988332  2467779999999888877

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-32  Score=294.17  Aligned_cols=259  Identities=14%  Similarity=0.174  Sum_probs=212.5

Q ss_pred             cccchHhHHHHH--cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCchhhhchhcCC
Q 007677           28 ITRRLKLYRAAL--NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEA-----NRIDFVKKLLKRMSAEDLAKQNKIG  100 (593)
Q Consensus        28 ~~~~t~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~d~~g  100 (593)
                      ..+.|+++.+..  .++.++|+.|++. |++++.+ +..|.||||.|+..     ++.+++++|+++  |+++|.+|..|
T Consensus        34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~~-Gadvn~~-d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~--GadiN~~d~~G  109 (489)
T PHA02798         34 VNEYSIFQKYLQRDSPSTDIVKLFINL-GANVNGL-DNEYSTPLCTILSNIKDYKHMLDIVKILIEN--GADINKKNSDG  109 (489)
T ss_pred             cccchHHHHHHhCCCCCHHHHHHHHHC-CCCCCCC-CCCCCChHHHHHHhHHhHHhHHHHHHHHHHC--CCCCCCCCCCc
Confidence            446676664443  4578999999886 8899987 88999999998864     678999999998  89999999999


Q ss_pred             ChHHHHHHHcC---CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHHhcc-cccC-CcchhHHHHH
Q 007677          101 CTAVFYAVASE---SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR---TEVVEFLYRETK-NSLK-DDDCIELLVQ  172 (593)
Q Consensus       101 ~TpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~~-~~~~-~~~g~t~L~~  172 (593)
                      .||||+|+..|   +.+++++|+++|+++ +.+|..|.||||+|++.|+   .+++++|+++|+ .+.. +..|.||||.
T Consensus       110 ~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~  188 (489)
T PHA02798        110 ETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHC  188 (489)
T ss_pred             CcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHH
Confidence            99999999875   789999999999997 8899999999999999887   899999999988 5444 4578899998


Q ss_pred             HHHc----CCHHHHHHHHHhcchhhhccccCCccHHHH-------HHhcCCCcccccchhHHHHHHHHHHHHHhcChHHH
Q 007677          173 LIET----GLYAVALQLLHDHRYLATKRAKNKETALHV-------LARKNLGDKDRKNKEAETLVESLWEEVILLSKQEI  241 (593)
Q Consensus       173 A~~~----~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~-------a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~  241 (593)
                      ++..    ++.++++.|+++ +..++..+..|.++++-       +...+.          .+++++++. +++++..+ 
T Consensus       189 ~~~~~~~~~~~~ivk~Li~~-Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~----------~~i~~~l~~-~~dvN~~d-  255 (489)
T PHA02798        189 YFKYNIDRIDADILKLFVDN-GFIINKENKSHKKKFMEYLNSLLYDNKRFK----------KNILDFIFS-YIDINQVD-  255 (489)
T ss_pred             HHHhccccCCHHHHHHHHHC-CCCcccCCccccchHHHHHHHHHhhcccch----------HHHHHHHHh-cCCCCCcC-
Confidence            8765    478999999988 66677778888888762       122222          566666554 46665544 


Q ss_pred             HHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccc
Q 007677          242 WELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD  310 (593)
Q Consensus       242 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~  310 (593)
                          ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+++++.++++.|++.+++.+
T Consensus       256 ----~~G~TPL~~A~~~~~~~~v~~LL~~GAdi-n~~d~~-G~TpL~~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        256 ----ELGFNPLYYSVSHNNRKIFEYLLQLGGDI-NIITEL-GNTCLFTAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             ----cCCccHHHHHHHcCcHHHHHHHHHcCCcc-cccCCC-CCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence                78899999999999999999999999998 788988 9999999999999999999999988743

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-33  Score=241.69  Aligned_cols=209  Identities=23%  Similarity=0.236  Sum_probs=167.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhc-CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNK-IGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      +.++.+.+++.....-|+.+++.. +..++.+|. +|+||||+||..|+.+++++|++.-.-.++.+|..|+||||.|+.
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~-~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s   81 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSD-PKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAAS   81 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcC-hhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhh
Confidence            456667777766666677776663 445665555 677777777777777777777753222235556777777777777


Q ss_pred             cCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677          144 LGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE  223 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~  223 (593)
                      .|+.++|+.|+..                                .+.+++..+..|+|+||||+.++.          .
T Consensus        82 ~g~~evVk~Ll~r--------------------------------~~advna~tn~G~T~LHyAagK~r----------~  119 (226)
T KOG4412|consen   82 NGNDEVVKELLNR--------------------------------SGADVNATTNGGQTCLHYAAGKGR----------L  119 (226)
T ss_pred             cCcHHHHHHHhcC--------------------------------CCCCcceecCCCcceehhhhcCCh----------h
Confidence            7777666666654                                356678889999999999999999          9


Q ss_pred             HHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHh
Q 007677          224 TLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIY  303 (593)
Q Consensus       224 ~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll  303 (593)
                      ++.++|++.|+.++.++     ..|.||||-||..|+.+++++|+..++.+ +..|+. |+||||.|...|+.++..+|+
T Consensus       120 eIaqlLle~ga~i~~kD-----~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~-G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  120 EIAQLLLEKGALIRIKD-----KQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKY-GFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             hHHHHHHhcCCCCcccc-----cccCchhHHHHhccchhhHHHHHhcCCCC-Cccccc-CccHHHHHHhccCchHHHHHH
Confidence            99999999999888766     88999999999999999999999999887 899999 999999999999999999999


Q ss_pred             cccCccccccccccCCCCchhHhhh
Q 007677          304 DIKPIADLMVDCTDEKGNNILHLAG  328 (593)
Q Consensus       304 ~~~~~~~~lin~~D~~G~T~LH~A~  328 (593)
                      ++|++    +...|++| ||+-.|.
T Consensus       193 ~~gAd----~~~edke~-t~~~~a~  212 (226)
T KOG4412|consen  193 RAGAD----TDREDKEG-TALRIAC  212 (226)
T ss_pred             Hhccc----eeeccccC-chHHHHH
Confidence            99998    67899988 9987765

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3e-33  Score=271.82  Aligned_cols=215  Identities=20%  Similarity=0.201  Sum_probs=186.8

Q ss_pred             HHHHHcCCHHHHHHHHhhCc-ccccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhh--------hchhcCCChH
Q 007677           35 YRAALNGDWAVAKDIYDKYE-GEIGV--EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL--------AKQNKIGCTA  103 (593)
Q Consensus        35 h~Aa~~g~~~~v~~Ll~~~~-~~~~~--~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~--------~~~d~~g~Tp  103 (593)
                      ..|++.|+...+..|+.... .++..  -...+|.|||-+||++||.++|++|++++ ++++        +-.+..|-+|
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCch
Confidence            47888899888877776421 11111  12578899999999999999999999976 4443        3345678999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      |-.|+..||+++|+.|+++|+++ +.......|||-.||.-||.|+|++|+++++ ....++.|.|.|++|+..|+.+++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~  166 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIA  166 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCcc-ccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHH
Confidence            99999999999999999999997 5666677899999999999999999999999 899999999999999999999999


Q ss_pred             HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677          183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ  262 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  262 (593)
                      ++|++. +.+++.++..|.|+||.++..|+          .++++.|+++|+.++..      ..|.|||..|+..|+.+
T Consensus       167 qyLle~-gADvn~ks~kGNTALH~caEsG~----------vdivq~Ll~~ga~i~~d------~~GmtPL~~Aa~tG~~~  229 (615)
T KOG0508|consen  167 QYLLEQ-GADVNAKSYKGNTALHDCAESGS----------VDIVQLLLKHGAKIDVD------GHGMTPLLLAAVTGHTD  229 (615)
T ss_pred             HHHHHh-CCCcchhcccCchHHHhhhhccc----------HHHHHHHHhCCceeeec------CCCCchHHHHhhhcchH
Confidence            999998 78889999999999999999999          99999999999877643      67899999999999999


Q ss_pred             HHHHHH
Q 007677          263 FLSILI  268 (593)
Q Consensus       263 ~v~~Ll  268 (593)
                      +|+.|+
T Consensus       230 iVe~L~  235 (615)
T KOG0508|consen  230 IVERLL  235 (615)
T ss_pred             HHHHHh
Confidence            998887

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=292.94  Aligned_cols=282  Identities=15%  Similarity=0.225  Sum_probs=233.5

Q ss_pred             hHhHHHHHcC---CHHHHHHHHhhCccccccccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           32 LKLYRAALNG---DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEA--NRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        32 t~Lh~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      .+||.-+...   +.+.|+.|++.  .+++..  ..|.|+++.+...  ++.++|++|+++  |++++.+|..|.||||.
T Consensus         4 ~~l~~y~~~~~~~~~~~v~~ll~~--~~~~~~--~~~~~~~~~yl~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL~~   77 (489)
T PHA02798          4 DNLYNYITFSDNVKLSTVKLLIKS--CNPNEI--VNEYSIFQKYLQRDSPSTDIVKLFINL--GANVNGLDNEYSTPLCT   77 (489)
T ss_pred             hhhHHHeeecCcccHHHHHHHHhc--CChhhh--cccchHHHHHHhCCCCCHHHHHHHHHC--CCCCCCCCCCCCChHHH
Confidence            3566554433   47789999975  234432  4577888755544  579999999999  89999999999999999


Q ss_pred             HHHc-----CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC---CHHHHHHHHHhcc-cccCCcchhHHHHHHHHcC
Q 007677          107 AVAS-----ESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG---RTEVVEFLYRETK-NSLKDDDCIELLVQLIETG  177 (593)
Q Consensus       107 A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~  177 (593)
                      |+.+     ++.+++++|+++|+++ +.+|..|.||||+|+.++   +.+++++|+++|+ .+..|..|.||||.|+..+
T Consensus        78 ~~~n~~~~~~~~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~  156 (489)
T PHA02798         78 ILSNIKDYKHMLDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSN  156 (489)
T ss_pred             HHHhHHhHHhHHHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcC
Confidence            9864     6799999999999997 889999999999999986   7899999999999 8889999999999999998


Q ss_pred             C---HHHHHHHHHhcchhhhcc-ccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHH
Q 007677          178 L---YAVALQLLHDHRYLATKR-AKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIH  253 (593)
Q Consensus       178 ~---~~~v~~Ll~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh  253 (593)
                      +   .++++.|++. +.+++.+ +..|.||||.++..+.      .....+++++|+++|++++..+     ..|.++++
T Consensus       157 ~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~~------~~~~~~ivk~Li~~Ga~i~~~~-----~~~~~~~~  224 (489)
T PHA02798        157 HHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYNI------DRIDADILKLFVDNGFIINKEN-----KSHKKKFM  224 (489)
T ss_pred             CcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHHHhcc------ccCCHHHHHHHHHCCCCcccCC-----ccccchHH
Confidence            8   9999999998 5666665 4579999999876531      0112789999999999887644     55677765


Q ss_pred             -------HHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHh
Q 007677          254 -------DAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHL  326 (593)
Q Consensus       254 -------~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~  326 (593)
                             .+...++.++++.|+. ++++ +.+|.. |+||||+|+.+|+.+++++|++.|++    +|.+|..|+||||+
T Consensus       225 ~~l~~l~~~~~~~~~~i~~~l~~-~~dv-N~~d~~-G~TPL~~A~~~~~~~~v~~LL~~GAd----in~~d~~G~TpL~~  297 (489)
T PHA02798        225 EYLNSLLYDNKRFKKNILDFIFS-YIDI-NQVDEL-GFNPLYYSVSHNNRKIFEYLLQLGGD----INIITELGNTCLFT  297 (489)
T ss_pred             HHHHHHHhhcccchHHHHHHHHh-cCCC-CCcCcC-CccHHHHHHHcCcHHHHHHHHHcCCc----ccccCCCCCcHHHH
Confidence                   3455677888888766 5887 899999 99999999999999999999999999    88999999999999


Q ss_pred             hhhhCCCcccccc
Q 007677          327 AGELAPQHRLNVV  339 (593)
Q Consensus       327 A~~~~~~~~~~~l  339 (593)
                      |++.++.+++..+
T Consensus       298 A~~~~~~~iv~~l  310 (489)
T PHA02798        298 AFENESKFIFNSI  310 (489)
T ss_pred             HHHcCcHHHHHHH
Confidence            9999987766554

>PHA02730 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.2e-31  Score=283.97  Aligned_cols=308  Identities=15%  Similarity=0.133  Sum_probs=207.2

Q ss_pred             HHHHHHhhhhccccCCCccccccchHhHHHHHcC--CHHHHHHHHhhC-ccccccccCCCCCcHHHHHHH--cCCHHHHH
Q 007677            8 SKQLKEDKRKESDEQLPAETITRRLKLYRAALNG--DWAVAKDIYDKY-EGEIGVEITNHGKTALHVAAE--ANRIDFVK   82 (593)
Q Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g--~~~~v~~Ll~~~-~~~~~~~~~~~g~T~Lh~Aa~--~g~~~~v~   82 (593)
                      .+.++.+.+.+.+.+  .+|..|+||||.|+..|  +.|+|+.|++.. +++++.. +..+++|||.++.  .++.|+|+
T Consensus        57 ~eivklLLs~GAdin--~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~-~~~~d~~l~~y~~s~n~~~~~vk  133 (672)
T PHA02730         57 IKIVRLLLSRGVERL--CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT-SNINDFDLYSYMSSDNIDLRLLK  133 (672)
T ss_pred             HHHHHHHHhCCCCCc--ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc-cccCCchHHHHHHhcCCcHHHHH
Confidence            456666667776655  88999999999999976  789999888862 2333433 4455666666665  55666666


Q ss_pred             HHHHcCCchhhhchhc-----CCChHHHHHHHcC----------------------------------------------
Q 007677           83 KLLKRMSAEDLAKQNK-----IGCTAVFYAVASE----------------------------------------------  111 (593)
Q Consensus        83 ~Ll~~~~~~~~~~~d~-----~g~TpLh~A~~~g----------------------------------------------  111 (593)
                      +|++.+ +.+++..+.     .|.+|+++|...+                                              
T Consensus       134 ~Li~~~-~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~  212 (672)
T PHA02730        134 YLIVDK-RIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESES  212 (672)
T ss_pred             HHHHhc-CCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhc
Confidence            666421 233332211     3444444444444                                              


Q ss_pred             -CHHHHHHHHhcCCCCCccCCCCCCCHHHH--HHHcCCHHHHHHHHH--------------------------------h
Q 007677          112 -SVELVKATMKGNEGIATLPDNDGMLPIVR--AASLGRTEVVEFLYR--------------------------------E  156 (593)
Q Consensus       112 -~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~--A~~~g~~~iv~~Ll~--------------------------------~  156 (593)
                       +.|++++|+++|+++ +.+|.+|+||||+  |...|+.|++++|++                                +
T Consensus       213 n~~eiv~lLIs~GadI-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (672)
T PHA02730        213 LSKDVIKCLIDNNVSI-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPY  291 (672)
T ss_pred             cCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccC
Confidence             455555555555554 5566677777774  444456777777777                                2


Q ss_pred             cc-ccc--------------------CCcchhH---------------------HHHHHHHcC---CHHHHHHHHHhcch
Q 007677          157 TK-NSL--------------------KDDDCIE---------------------LLVQLIETG---LYAVALQLLHDHRY  191 (593)
Q Consensus       157 ~~-~~~--------------------~~~~g~t---------------------~L~~A~~~~---~~~~v~~Ll~~~~~  191 (593)
                      +. ...                    .+..|.+                     .||.-...+   +.++++.|+++ |.
T Consensus       292 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~-GA  370 (672)
T PHA02730        292 NVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDN-GA  370 (672)
T ss_pred             CcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHC-CC
Confidence            32 111                    2223322                     555555544   46677777776 56


Q ss_pred             hhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHh--cChHHHHHHhhcchhHHHH---HHHcC-------
Q 007677          192 LATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVIL--LSKQEIWELIEQPRELIHD---AADRG-------  259 (593)
Q Consensus       192 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~g~tpLh~---Aa~~g-------  259 (593)
                      +++.. ..|.||||+|+..+.      +....+++++|+++|++  ++..     |..|.||||.   |...+       
T Consensus       371 dIN~k-~~G~TpLH~Aa~~nn------n~i~~eIvelLIs~Ga~~dIN~k-----d~~G~T~Lh~~i~a~~~n~~~~~~e  438 (672)
T PHA02730        371 TMDKT-TDNNYPLHDYFVNNN------NIVDVNVVRFIVENNGHMAINHV-----SNNGRLCMYGLILSRFNNCGYHCYE  438 (672)
T ss_pred             CCCcC-CCCCcHHHHHHHHcC------CcchHHHHHHHHHcCCCcccccc-----ccCCCchHhHHHHHHhccccccccc
Confidence            66654 789999999887653      00126999999999874  4443     3788999994   33332       


Q ss_pred             --cHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccC-CCCchhHhhhhh--CCCc
Q 007677          260 --NVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDE-KGNNILHLAGEL--APQH  334 (593)
Q Consensus       260 --~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~-~G~T~LH~A~~~--~~~~  334 (593)
                        ..+++++|+++|+++ +.+|.. |+||||+|+..++.+++++|+++|++    +|.+|. .|+||||+|+..  ++.+
T Consensus       439 ~~~~~ivk~LIs~GADI-NakD~~-G~TPLh~Aa~~~~~eive~LI~~GAd----IN~~d~~~g~TaL~~Aa~~~~~~~e  512 (672)
T PHA02730        439 TILIDVFDILSKYMDDI-DMIDNE-NKTLLYYAVDVNNIQFARRLLEYGAS----VNTTSRSIINTAIQKSSYRRENKTK  512 (672)
T ss_pred             hhHHHHHHHHHhcccch-hccCCC-CCCHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCcCCcCHHHHHHHhhcCcHH
Confidence              235799999999998 899999 99999999999999999999999999    889997 599999999974  5556


Q ss_pred             ccccc
Q 007677          335 RLNVV  339 (593)
Q Consensus       335 ~~~~l  339 (593)
                      +++.|
T Consensus       513 Iv~~L  517 (672)
T PHA02730        513 LVDLL  517 (672)
T ss_pred             HHHHH
Confidence            66554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=5.4e-31  Score=276.06  Aligned_cols=316  Identities=10%  Similarity=0.045  Sum_probs=233.5

Q ss_pred             ccccchHhHHHHHcCCH----HHHHHHHhhCccccccccCCCCCcHHHHH-HHcCCHHHHHHHHHcCCchhhhchhcCCC
Q 007677           27 TITRRLKLYRAALNGDW----AVAKDIYDKYEGEIGVEITNHGKTALHVA-AEANRIDFVKKLLKRMSAEDLAKQNKIGC  101 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~A-a~~g~~~~v~~Ll~~~~~~~~~~~d~~g~  101 (593)
                      ..++.||||.-..+.+.    +++-.|+..    .+.. +-+|.+|+|+- ...|+.|+|++|+++  |+++|.++..|.
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-n~~~~~~~~~~~s~n~~lElvk~LI~~--GAdvN~~~n~~~  106 (631)
T PHA02792         34 EYDGETPLKAYVTKKNNNIKNDVVILLLSS----VDYK-NINDFDIFEYLCSDNIDIELLKLLISK--GLEINSIKNGIN  106 (631)
T ss_pred             ccCCCccHHHHHhhhhhhHHHHHHHHHHhC----CCcC-ccCCccHHHHHHHhcccHHHHHHHHHc--CCCcccccCCCC
Confidence            56677999988665552    234444443    4444 66778899875 456889999999998  899999999999


Q ss_pred             hHHHHHHH-cCCHHHHHHHHhcCCCCC-----------------------------------ccCCCCCCCHHHHHHHcC
Q 007677          102 TAVFYAVA-SESVELVKATMKGNEGIA-----------------------------------TLPDNDGMLPIVRAASLG  145 (593)
Q Consensus       102 TpLh~A~~-~g~~~iv~~Ll~~~~~~~-----------------------------------~~~~~~g~tpL~~A~~~g  145 (593)
                      ||+|+|+. .|+.|++++|+++|++..                                   +..+..|.||||+|+.++
T Consensus       107 ~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~  186 (631)
T PHA02792        107 IVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITR  186 (631)
T ss_pred             cceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhC
Confidence            99999966 699999999999997631                                   145667999999999999


Q ss_pred             -------CHHHHHHHHHhcc-cccCCcchhHHHHHHHHcC--CHHHHHHHHHhcchhhh------------cccc-----
Q 007677          146 -------RTEVVEFLYRETK-NSLKDDDCIELLVQLIETG--LYAVALQLLHDHRYLAT------------KRAK-----  198 (593)
Q Consensus       146 -------~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~------------~~d~-----  198 (593)
                             +.|++++|+++|+ ....|..|.||||+|+.+.  ..|+++.|++..-....            .+..     
T Consensus       187 s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id  266 (631)
T PHA02792        187 SQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKID  266 (631)
T ss_pred             CcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCcc
Confidence                   8999999999998 7778888999999999999  78889888875211000            0000     


Q ss_pred             --------CCccHHHHHHhcCC----------------------CcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcc
Q 007677          199 --------NKETALHVLARKNL----------------------GDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQP  248 (593)
Q Consensus       199 --------~g~t~Lh~a~~~~~----------------------~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g  248 (593)
                              .|.+|-........                      ...........+++++|++.|++...       ..+
T Consensus       267 ~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r-------~~~  339 (631)
T PHA02792        267 NYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR-------FKH  339 (631)
T ss_pred             HHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc-------CCc
Confidence                    11111110000000                      00000112346777778887776541       224


Q ss_pred             hhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCC--chHHHHHHHcCchh---HHHHHhcccCccccccccccCCCCch
Q 007677          249 RELIHDAADRGNVQFLSILIREYPDLMWKADKKDN--YTIFHIAVKNRLED---LFKFIYDIKPIADLMVDCTDEKGNNI  323 (593)
Q Consensus       249 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g--~t~Lh~Av~~~~~~---iv~~Ll~~~~~~~~lin~~D~~G~T~  323 (593)
                      ..+++.|+..|+.++++.|+++|+++ +.+|.. |  .||||.|......+   ++++|+++|++    +|.+|..|+||
T Consensus       340 ~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~-g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD----IN~kD~~G~TP  413 (631)
T PHA02792        340 INKYFQKFDNRDPKVVEYILKNGNVV-VEDDDN-IINIMPLFPTLSIHESDVLSILKLCKPYIDD----INKIDKHGRSI  413 (631)
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCch-hhhcCC-CCChhHHHHHHHhccHhHHHHHHHHHhcCCc----cccccccCcch
Confidence            67799999999999999999999999 677766 5  69999988776654   58889999998    89999999999


Q ss_pred             hHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhH
Q 007677          324 LHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSK  381 (593)
Q Consensus       324 LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~  381 (593)
                      ||+|+..++.++++.|                   +-.|++++.+|..|+||+++|..
T Consensus       414 Lh~Aa~~~n~eivelL-------------------Ls~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        414 LYYCIESHSVSLVEWL-------------------IDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHHHcCCHHHHHHH-------------------HHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999998886655443                   23789999999999999999865

>PHA02792 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-29  Score=266.45  Aligned_cols=278  Identities=13%  Similarity=0.105  Sum_probs=222.4

Q ss_pred             ccccccchHhHH-HHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHH-cCCHHHHHHHHHcCCchh----------
Q 007677           25 AETITRRLKLYR-AALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAE-ANRIDFVKKLLKRMSAED----------   92 (593)
Q Consensus        25 ~~~~~~~t~Lh~-Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~----------   92 (593)
                      ..|.+|..++|. |...|+.|+|+.|+++ |++++.+ ++.|.||||+|+. .|+.|+|++|++++  ++          
T Consensus        66 ~~n~~~~~~~~~~~s~n~~lElvk~LI~~-GAdvN~~-~n~~~~~l~ya~~~~~~~eivk~Ll~~G--ad~~~~~~~g~~  141 (631)
T PHA02792         66 YKNINDFDIFEYLCSDNIDIELLKLLISK-GLEINSI-KNGINIVEKYATTSNPNVDVFKLLLDKG--IPTCSNIQYGYK  141 (631)
T ss_pred             cCccCCccHHHHHHHhcccHHHHHHHHHc-CCCcccc-cCCCCcceeEeecCCCChHHHHHHHHCC--CCcccccccCcc
Confidence            457778889976 6778999999999996 9999988 7779999999976 69999999999994  32          


Q ss_pred             --------------------------hhchhcCCChHHHHHHHcC-------CHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677           93 --------------------------LAKQNKIGCTAVFYAVASE-------SVELVKATMKGNEGIATLPDNDGMLPIV  139 (593)
Q Consensus        93 --------------------------~~~~d~~g~TpLh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  139 (593)
                                                ++.+|..|.||||+|+.++       +.|+++.|+++|+++ +..|..|.||||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~  220 (631)
T PHA02792        142 IIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLY  220 (631)
T ss_pred             hhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHH
Confidence                                      3456778999999999999       899999999999997 778999999999


Q ss_pred             HHHHcC--CHHHHHHHHHhcc--cc------------cCCcc--------------------------------------
Q 007677          140 RAASLG--RTEVVEFLYRETK--NS------------LKDDD--------------------------------------  165 (593)
Q Consensus       140 ~A~~~g--~~~iv~~Ll~~~~--~~------------~~~~~--------------------------------------  165 (593)
                      +|+.+.  +.|++++|++..-  ..            .+..+                                      
T Consensus       221 ~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~  300 (631)
T PHA02792        221 YYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILK  300 (631)
T ss_pred             HHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHH
Confidence            999999  8899999987532  00            00000                                      


Q ss_pred             -----hhHHHHHHHHcC--CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcCh
Q 007677          166 -----CIELLVQLIETG--LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSK  238 (593)
Q Consensus       166 -----g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  238 (593)
                           -+..||.-...+  +.++++.|++.+ ....  ......+++.|+..++          .+++++|+++|++++.
T Consensus       301 ~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G-a~~~--r~~~~n~~~~Aa~~gn----------~eIVelLIs~GADIN~  367 (631)
T PHA02792        301 RYTDSIQDLLSEYVSYHTVYINVIKCMIDEG-ATLY--RFKHINKYFQKFDNRD----------PKVVEYILKNGNVVVE  367 (631)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHCC-Cccc--cCCcchHHHHHHHcCC----------HHHHHHHHHcCCchhh
Confidence                 012333333333  456677777663 2221  2235667888998888          8999999999999876


Q ss_pred             HHHHHHhhcchhHHHHHHHcCcH---HHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcccccccc
Q 007677          239 QEIWELIEQPRELIHDAADRGNV---QFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDC  315 (593)
Q Consensus       239 ~~~~~~~~~g~tpLh~Aa~~g~~---~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~  315 (593)
                      .+   .+..|.||||.|+..+..   ++++.|+++|+++ +.+|.. |+||||+|+..++.+++++|+++|++    +|.
T Consensus       368 kD---~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADI-N~kD~~-G~TPLh~Aa~~~n~eivelLLs~GAD----IN~  438 (631)
T PHA02792        368 DD---DNIINIMPLFPTLSIHESDVLSILKLCKPYIDDI-NKIDKH-GRSILYYCIESHSVSLVEWLIDNGAD----INI  438 (631)
T ss_pred             hc---CCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcc-cccccc-CcchHHHHHHcCCHHHHHHHHHCCCC----CCC
Confidence            54   112247999998877665   4688899999999 889999 99999999999999999999999998    889


Q ss_pred             ccCCCCchhHhhhh
Q 007677          316 TDEKGNNILHLAGE  329 (593)
Q Consensus       316 ~D~~G~T~LH~A~~  329 (593)
                      +|..|+||||+|+.
T Consensus       439 kD~~G~TpL~~A~~  452 (631)
T PHA02792        439 TTKYGSTCIGICVI  452 (631)
T ss_pred             cCCCCCCHHHHHHH
Confidence            99999999999986

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.9e-29  Score=255.07  Aligned_cols=208  Identities=24%  Similarity=0.304  Sum_probs=139.7

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHc
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVAS  110 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~  110 (593)
                      .-++.|+++|+.+.|+.+++..+.+++.. |.+|.|+||+||.+++.+++++|+++  ++++|... .-+.||||+|+++
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~-D~~g~tlLHWAAiNNrl~v~r~li~~--gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNP-DREGVTLLHWAAINNRLDVARYLISH--GADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCC-CcCCccceeHHHHcCcHHHHHHHHHc--CCCccccCCCCCCCcchHHHHc
Confidence            44566677777777777766655566655 66677777777777777777777776  66666666 4566777777777


Q ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcc
Q 007677          111 ESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHR  190 (593)
Q Consensus       111 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  190 (593)
                      |+..+|++|+++|+++ ..+|.+|.+|||+|++.|+.-.|-||+.++                                 
T Consensus       123 G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~---------------------------------  168 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKG---------------------------------  168 (600)
T ss_pred             CcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhc---------------------------------
Confidence            7777777777777764 666777777777777777666666666543                                 


Q ss_pred             hhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHH
Q 007677          191 YLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIRE  270 (593)
Q Consensus       191 ~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~  270 (593)
                      .+++.+|.+|+||||+|+.++                                                ....+..||+.
T Consensus       169 ~d~d~~D~~grTpLmwAaykg------------------------------------------------~~~~v~~LL~f  200 (600)
T KOG0509|consen  169 ADIDLRDNNGRTPLMWAAYKG------------------------------------------------FALFVRRLLKF  200 (600)
T ss_pred             ccCCCcCCCCCCHHHHHHHhc------------------------------------------------ccHHHHHHHHh
Confidence            334556666666666655554                                                44446777777


Q ss_pred             CCCcccccc-CCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhh
Q 007677          271 YPDLMWKAD-KKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGEL  330 (593)
Q Consensus       271 ~~~~~~~~d-~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~  330 (593)
                      ++.+ ..+| .. |.||||+|+..|+.+++++|++.|++    .+.+|.+|.||+.+|.+.
T Consensus       201 ~a~~-~~~d~~~-g~TpLHwa~~~gN~~~v~Ll~~g~~~----~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  201 GASL-LLTDDNH-GNTPLHWAVVGGNLTAVKLLLEGGAD----LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccc-ccccccc-CCchHHHHHhcCCcceEehhhhcCCc----ccccccCCCCHHHHHHHh
Confidence            7777 4444 55 88888888888888888855565565    557777788888888665

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=254.29  Aligned_cols=195  Identities=23%  Similarity=0.198  Sum_probs=173.6

Q ss_pred             HHHHHhhhh-ccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677            9 KQLKEDKRK-ESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR   87 (593)
Q Consensus         9 ~~l~~~~~~-~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~   87 (593)
                      +..+++... +.+.  +.+|.+|.|+||+||.+++.+++++|+++ ++++|..-..-+.||||+|+++|+..+|+.|+++
T Consensus        58 ~~v~~lve~~g~~v--~~~D~~g~tlLHWAAiNNrl~v~r~li~~-gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqh  134 (600)
T KOG0509|consen   58 ETVKELVESEGESV--NNPDREGVTLLHWAAINNRLDVARYLISH-GADVNAIGGVLGSTPLHWAARNGHISVVDLLLQH  134 (600)
T ss_pred             HHHHHHHhhcCcCC--CCCCcCCccceeHHHHcCcHHHHHHHHHc-CCCccccCCCCCCCcchHHHHcCcHHHHHHHHHc
Confidence            344445444 4333  37788999999999999999999999997 8999987557889999999999999999999999


Q ss_pred             CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCC-cc
Q 007677           88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKD-DD  165 (593)
Q Consensus        88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~-~~  165 (593)
                        |++++.+|.+|.||||.|++.||.-+|-+|+.++++. +.+|.+|+||||+|+..|+...++.|+.-++ ....| ..
T Consensus       135 --GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~  211 (600)
T KOG0509|consen  135 --GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNH  211 (600)
T ss_pred             --CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccccc
Confidence              9999999999999999999999999999999999886 9999999999999999999988999999988 55554 99


Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhc
Q 007677          166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARK  210 (593)
Q Consensus       166 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~  210 (593)
                      |.||||+|+..|+..++. |+...+...+.+|.+|.||+.+|..+
T Consensus       212 g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  212 GNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999999999999 77776788888999999999998765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3.1e-26  Score=216.35  Aligned_cols=179  Identities=17%  Similarity=0.216  Sum_probs=136.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC--CHHHHHHHHhcCCCCCccCC-CCCCCHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE--SVELVKATMKGNEGIATLPD-NDGMLPI  138 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~-~~g~tpL  138 (593)
                      ...+.||||.|+..|+.+.|+.|++.     ++.+|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..|.|||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpL   91 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSAL   91 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHH
Confidence            34568899999999999999888865     5667888899999888754  888999999998887 5554 5788899


Q ss_pred             HHHHHc---CCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcc
Q 007677          139 VRAASL---GRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDK  215 (593)
Q Consensus       139 ~~A~~~---g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~  215 (593)
                      |+|+..   ++.+++++|+++++                                 +++.+|..|.||||+|+..     
T Consensus        92 h~a~~~~~~~~~eiv~~Ll~~ga---------------------------------din~~d~~G~TpLh~a~~~-----  133 (209)
T PHA02859         92 HHYLSFNKNVEPEILKILIDSGS---------------------------------SITEEDEDGKNLLHMYMCN-----  133 (209)
T ss_pred             HHHHHhCccccHHHHHHHHHCCC---------------------------------CCCCcCCCCCCHHHHHHHh-----
Confidence            887753   35677777766553                                 3345566666666654432     


Q ss_pred             cccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHH-HHHcC
Q 007677          216 DRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHI-AVKNR  294 (593)
Q Consensus       216 ~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~-Av~~~  294 (593)
                                                               ..++.+++++|+++|+++ +.+|.. |.||||. |+..+
T Consensus       134 -----------------------------------------~~~~~~iv~~Li~~gadi-n~~d~~-g~t~Lh~~a~~~~  170 (209)
T PHA02859        134 -----------------------------------------FNVRINVIKLLIDSGVSF-LNKDFD-NNNILYSYILFHS  170 (209)
T ss_pred             -----------------------------------------ccCCHHHHHHHHHcCCCc-ccccCC-CCcHHHHHHHhcC
Confidence                                                     135678888888888888 678888 9999985 55677


Q ss_pred             chhHHHHHhcccCccccccccccCCCCchhHhhhhhC
Q 007677          295 LEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELA  331 (593)
Q Consensus       295 ~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~  331 (593)
                      +.+++++|+++|++    ++.+|..|.||||+|...+
T Consensus       171 ~~~iv~~Ll~~Gad----i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        171 DKKIFDFLTSLGID----INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhhh
Confidence            88999999998887    7788999999999987643

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=8.1e-26  Score=213.54  Aligned_cols=176  Identities=15%  Similarity=0.075  Sum_probs=156.3

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCchhhhchh-cCCChH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEAN--RIDFVKKLLKRMSAEDLAKQN-KIGCTA  103 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp  103 (593)
                      ..++.+|||.|+..|+.+.|+.|++.    ++.. |..|.||||+|+..+  +.+++++|+++  +++++.++ ..|.||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~----~n~~-~~~g~TpLh~a~~~~~~~~eiv~~Ll~~--gadvn~~~~~~g~Tp   90 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF----VNDC-NDLYETPIFSCLEKDKVNVEILKFLIEN--GADVNFKTRDNNLSA   90 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh----hhcc-CccCCCHHHHHHHcCCCCHHHHHHHHHC--CCCCCccCCCCCCCH
Confidence            55678999999999999999999874    3444 889999999999854  89999999999  89999997 589999


Q ss_pred             HHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH--cCCHHHHHHHHHhcc-cccCCcchhHHHHH-HHHc
Q 007677          104 VFYAVAS---ESVELVKATMKGNEGIATLPDNDGMLPIVRAAS--LGRTEVVEFLYRETK-NSLKDDDCIELLVQ-LIET  176 (593)
Q Consensus       104 Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~-A~~~  176 (593)
                      ||+|+..   ++.+++++|+++|+++ +.+|..|.||||+|+.  .++.+++++|++.++ .+.+|..|.||||. +...
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~  169 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH  169 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence            9998864   5799999999999997 8899999999999986  468999999999998 78899999999995 5667


Q ss_pred             CCHHHHHHHHHhcchhhhccccCCccHHHHHHhcC
Q 007677          177 GLYAVALQLLHDHRYLATKRAKNKETALHVLARKN  211 (593)
Q Consensus       177 ~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~  211 (593)
                      ++.++++.|++. +.+++.+|..|.||||+|...+
T Consensus       170 ~~~~iv~~Ll~~-Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        170 SDKKIFDFLTSL-GIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             CCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhhh
Confidence            889999999887 6778899999999999998764

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.4e-25  Score=225.82  Aligned_cols=204  Identities=12%  Similarity=0.079  Sum_probs=166.3

Q ss_pred             HhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhh------chhcCCChHHHHHHH--cCCHHHHHHHHh
Q 007677           50 YDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLA------KQNKIGCTAVFYAVA--SESVELVKATMK  121 (593)
Q Consensus        50 l~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~------~~d~~g~TpLh~A~~--~g~~~iv~~Ll~  121 (593)
                      +-.++.+++.. +.+|     +|+..+..|++++|+++  +++++      .++..++|+||+|+.  .|+.++|++|++
T Consensus        68 ~~~~~~~i~~~-~~~~-----~~~~~~~k~~~~~l~s~--~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~  139 (437)
T PHA02795         68 FRIHRDNIDQY-IVDR-----LFAYITYKDIISALVSK--NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD  139 (437)
T ss_pred             HHHcCcchhhh-hhhh-----HHhhcchHHHHHHHHhc--ccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH
Confidence            33457777766 4444     89999999999999999  78877      788889999999999  899999999999


Q ss_pred             cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCc
Q 007677          122 GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKE  201 (593)
Q Consensus       122 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~  201 (593)
                      +|+++ +.  .++.||+|.|+..++.+++++|+++|+...  ..+.++                         ..+..+.
T Consensus       140 ~GADI-n~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~--n~~~~~-------------------------l~~~~~~  189 (437)
T PHA02795        140 HGAVI-YK--IECLNAYFRGICKKESSVVEFILNCGIPDE--NDVKLD-------------------------LYKIIQY  189 (437)
T ss_pred             CCCCC-CC--CCCCCHHHHHHHcCcHHHHHHHHhcCCccc--ccccch-------------------------hhhhhcc
Confidence            99997 44  356899999999999999999999986110  011111                         1223466


Q ss_pred             cHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCC
Q 007677          202 TALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK  281 (593)
Q Consensus       202 t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  281 (593)
                      +++|.++..++          .++++.|+++|++++..+     ..|.||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus       190 t~l~~a~~~~~----------~eIve~LIs~GADIN~kD-----~~G~TpLh~Aa~~g~~eiVelLL~~GAdI-N~~d~~  253 (437)
T PHA02795        190 TRGFLVDEPTV----------LEIYKLCIPYIEDINQLD-----AGGRTLLYRAIYAGYIDLVSWLLENGANV-NAVMSN  253 (437)
T ss_pred             chhHHHHhcCH----------HHHHHHHHhCcCCcCcCC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCC
Confidence            88888888877          889999999998887654     78899999999999999999999999998 788998


Q ss_pred             CCchHHHHHHHcC--------chhHHHHHhcccCc
Q 007677          282 DNYTIFHIAVKNR--------LEDLFKFIYDIKPI  308 (593)
Q Consensus       282 ~g~t~Lh~Av~~~--------~~~iv~~Ll~~~~~  308 (593)
                       |+||||+|+.+|        +.+++++|+++|++
T Consensus       254 -G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        254 -GYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             -CCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence             999999999988        46899999999887

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=4.8e-25  Score=226.63  Aligned_cols=248  Identities=19%  Similarity=0.181  Sum_probs=199.8

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCc------------cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYE------------GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI   99 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~------------~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~   99 (593)
                      +-|..|++.||.+.+..+|+..+            ...+.. |.+|.|+||.|+..|+.++++.|++.  .+.++..|..
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~q-d~~gfTalhha~Lng~~~is~llle~--ea~ldl~d~k   81 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQ-DYSGFTLLHHAVLNGQNQISKLLLDY--EALLDLCDTK   81 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCcccccc-CccchhHHHHHHhcCchHHHHHHhcc--hhhhhhhhcc
Confidence            45788999999999999998632            234544 78999999999999999999999999  7888999999


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCC
Q 007677          100 GCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGL  178 (593)
Q Consensus       100 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~  178 (593)
                      |.+|||+|++.|+.|+++.|+.++.. ++..+..|+||||.|+.+||.+++.+|+.+++ .-..+..+.|++..|++-|.
T Consensus        82 g~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             CcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence            99999999999999999999999954 58899999999999999999999999999998 77788899999999999999


Q ss_pred             HHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHc
Q 007677          179 YAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADR  258 (593)
Q Consensus       179 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~  258 (593)
                      .++++.|+..  .+.-..+.  .        .                      |  -.     .++-.+.+|||.|+++
T Consensus       161 ~~Vvq~ll~~--~~~~~~~~--~--------~----------------------~--~~-----~~~~~~~~plHlaakn  199 (854)
T KOG0507|consen  161 AEVVQMLLQK--KFPVQSSL--R--------V----------------------G--DI-----KRPFPAIYPLHLAAKN  199 (854)
T ss_pred             hHHHHHHhhh--ccchhhcc--c--------C----------------------C--CC-----CCCCCCcCCcchhhhc
Confidence            9999988886  11111100  0        0                      0  00     0113457888888888


Q ss_pred             CcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhC
Q 007677          259 GNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELA  331 (593)
Q Consensus       259 g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~  331 (593)
                      |+.++++.|++.|-++ +..... | |+||.|+..|..++|.+|++.|..    ...+|.+|+|+|.+-..+.
T Consensus       200 gh~~~~~~ll~ag~di-n~~t~~-g-talheaalcgk~evvr~ll~~gin----~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  200 GHVECMQALLEAGFDI-NYTTED-G-TALHEAALCGKAEVVRFLLEIGIN----THIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             chHHHHHHHHhcCCCc-cccccc-c-hhhhhHhhcCcchhhhHHHhhccc----cccccccchHHHHHHHhcc
Confidence            8888888888888888 444444 4 888888888888888888888776    5678888888887776543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.92  E-value=2e-25  Score=235.24  Aligned_cols=290  Identities=18%  Similarity=0.155  Sum_probs=251.1

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhc-hhcCCChHH
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK-QNKIGCTAV  104 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~TpL  104 (593)
                      ....-+|+|-.||..|+.|.++.|+.+ |+++..+ |+.|.+||.+|+-.||..+|+.|+++  .++++. .|+.++|+|
T Consensus       753 Te~n~~t~LT~acaggh~e~vellv~r-ganiehr-dkkgf~plImaatagh~tvV~~llk~--ha~veaQsdrtkdt~l  828 (2131)
T KOG4369|consen  753 TEPNIKTNLTSACAGGHREEVELLVVR-GANIEHR-DKKGFVPLIMAATAGHITVVQDLLKA--HADVEAQSDRTKDTML  828 (2131)
T ss_pred             cCccccccccccccCccHHHHHHHHHh-ccccccc-ccccchhhhhhcccCchHHHHHHHhh--hhhhhhhcccccCceE
Confidence            345567999999999999999999987 8888877 99999999999999999999999998  677775 578899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cc--cCCcchhHHHHHHHHcCCHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NS--LKDDDCIELLVQLIETGLYAV  181 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~--~~~~~g~t~L~~A~~~~~~~~  181 (593)
                      -+||..|..++|++||..|++- ..++....|||.+|...|..++++.|+..|. ++  .-.+-|..||.+|..+|+...
T Consensus       829 Slacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~a  907 (2131)
T KOG4369|consen  829 SLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAA  907 (2131)
T ss_pred             EEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHH
Confidence            9999999999999999999985 7889999999999999999999999999997 33  346778999999999999999


Q ss_pred             HHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH
Q 007677          182 ALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV  261 (593)
Q Consensus       182 v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~  261 (593)
                      ++.||+...+......-+.+|+|-+|+..|+          .+++..|+...+++....     +.|.|||+.+|..|.+
T Consensus       908 t~~ll~~gsdiNaqIeTNrnTaltla~fqgr----------~evv~lLLa~~anvehRa-----ktgltplme~AsgGyv  972 (2131)
T KOG4369|consen  908 TLSLLQPGSDINAQIETNRNTALTLALFQGR----------PEVVFLLLAAQANVEHRA-----KTGLTPLMEMASGGYV  972 (2131)
T ss_pred             HHHHhcccchhccccccccccceeeccccCc----------chHHHHHHHHhhhhhhhc-----ccCCcccchhhcCCcc
Confidence            9999998444333445678899999999998          889999998887776544     7889999999999999


Q ss_pred             HHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          262 QFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       262 ~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      |+=+.||..|+|.+...-.....|+|-+++..||.+.++.|+...+.    ++.++++|+|+|.+|+.-|+.....++
T Consensus       973 dvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at----v~v~NkkG~T~Lwla~~Gg~lss~~il 1046 (2131)
T KOG4369|consen  973 DVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT----VRVPNKKGCTVLWLASAGGALSSCPIL 1046 (2131)
T ss_pred             ccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccc----eecccCCCCcccchhccCCccccchHH
Confidence            99999999999985443333356899999999999999999987776    778999999999999998887665554

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=9.1e-23  Score=229.87  Aligned_cols=255  Identities=16%  Similarity=0.083  Sum_probs=172.6

Q ss_pred             cccchHhHHHHHcCCHHHHHHHHhhC-ccccccccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677           28 ITRRLKLYRAALNGDWAVAKDIYDKY-EGEIGVEITNHGKTALH-VAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF  105 (593)
Q Consensus        28 ~~~~t~Lh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~T~Lh-~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh  105 (593)
                      ..++.+++.|+..|+.+.++.++++. +.++|.. |..|+|||| .|+.+++.++++.|++.  +.    .+..|+||||
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~-d~~G~t~Lh~~A~~~~~~eiv~lLl~~--g~----~~~~G~T~Lh   87 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCP-DRLGRSALFVAAIENENLELTELLLNL--SC----RGAVGDTLLH   87 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCc-CccchhHHHHHHHhcChHHHHHHHHhC--CC----CCCcChHHHH
Confidence            35678999999999999999999862 4567765 889999999 88899999999999998  44    6888999999


Q ss_pred             HHHHcC---CHHHHHHHHhcCCCC---------CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHH
Q 007677          106 YAVASE---SVELVKATMKGNEGI---------ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQ  172 (593)
Q Consensus       106 ~A~~~g---~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~  172 (593)
                      .|+..+   ..++++.+...+++.         ....+..|.||||+|+.+|+.+++++|+++|+ .+..+..... .  
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~-~--  164 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFF-V--  164 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchh-h--
Confidence            999732   223444444444220         11234579999999999999999999999998 4432211000 0  


Q ss_pred             HHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHH
Q 007677          173 LIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELI  252 (593)
Q Consensus       173 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpL  252 (593)
                                    ..   ........|+||||.|+..++          .++++.|++.|++++..     |..|+|||
T Consensus       165 --------------~~---~~~~~~~~g~tpL~~Aa~~~~----------~~iv~lLl~~gadin~~-----d~~g~T~L  212 (743)
T TIGR00870       165 --------------KS---QGVDSFYHGESPLNAAACLGS----------PSIVALLSEDPADILTA-----DSLGNTLL  212 (743)
T ss_pred             --------------cC---CCCCcccccccHHHHHHHhCC----------HHHHHHHhcCCcchhhH-----hhhhhHHH
Confidence                          00   000112345666666666665          56666666665544433     25566666


Q ss_pred             HHHHHcC---------cHHHHHHHHHHCCCc------cccccCCCCchHHHHHHHcCchhHHHHHhcccCcccccccccc
Q 007677          253 HDAADRG---------NVQFLSILIREYPDL------MWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTD  317 (593)
Q Consensus       253 h~Aa~~g---------~~~~v~~Ll~~~~~~------~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D  317 (593)
                      |+|+..+         ...+.+.+++.+...      .+..|.+ |.||||+|+..|+.+++++|++.+..    .....
T Consensus       213 h~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~-g~TPL~~A~~~g~~~l~~lLL~~~~~----~kk~~  287 (743)
T TIGR00870       213 HLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQ-GLTPLKLAAKEGRIVLFRLKLAIKYK----QKKFV  287 (743)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCC-CCCchhhhhhcCCccHHHHHHHHHHh----cceee
Confidence            6666654         122444444443332      1346788 99999999999999999999987654    23445


Q ss_pred             CCCCchhHhhhh
Q 007677          318 EKGNNILHLAGE  329 (593)
Q Consensus       318 ~~G~T~LH~A~~  329 (593)
                      ...+.|.|++..
T Consensus       288 a~~~~~~~~~~~  299 (743)
T TIGR00870       288 AWPNGQQLLSLY  299 (743)
T ss_pred             ccCcchHhHhhh
Confidence            677888887765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PF13962 PGG: Domain of unknown function

Probab=99.91  E-value=2.9e-24  Score=180.80  Aligned_cols=109  Identities=41%  Similarity=0.706  Sum_probs=97.5

Q ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCCC---CCCccccCCc-cchhHHHHHHHHHHHHhHHHHHHHHhcccc
Q 007677          391 ETWMKDTASSCMIVATLIATIVFAAAITVPGGNKED---TGLPFFRQKA-SFKIFAVSNVISLVASSVSIVNFLSIVAPR  466 (593)
Q Consensus       391 ~~~~~~~~~~~~vva~Liatv~Faa~~t~Pgg~~~~---~G~~~~~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~~~~~  466 (593)
                      +||++++++++++||+|||||||+|++|||||++||   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            478999999999999999999999999999999775   6999998887 999999999999999999999888432   


Q ss_pred             chhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhee
Q 007677          467 YAEEDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYIV  505 (593)
Q Consensus       467 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~v  505 (593)
                         +++.+..+..+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               345566667778888999999999999999999976

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=212.37  Aligned_cols=218  Identities=13%  Similarity=0.026  Sum_probs=175.7

Q ss_pred             HHHHcCCHHHHHHHHhhCccccc------cccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677           36 RAALNGDWAVAKDIYDKYEGEIG------VEITNHGKTALHVAAE--ANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA  107 (593)
Q Consensus        36 ~Aa~~g~~~~v~~Ll~~~~~~~~------~~~~~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A  107 (593)
                      .|+..+..|+++.|+.+ +.+++      .+ +..++|+||+|+.  .|+.|+|++|+++  |++++.+  ++.||||.|
T Consensus        83 ~~~~~~~k~~~~~l~s~-~~~~~~~~~~~~~-~~~~~~~L~~~~~n~~n~~eiV~~LI~~--GADIn~~--~~~t~lh~A  156 (437)
T PHA02795         83 LFAYITYKDIISALVSK-NYMEDIFSIIIKN-CNSVQDLLLYYLSNAYVEIDIVDFMVDH--GAVIYKI--ECLNAYFRG  156 (437)
T ss_pred             HHhhcchHHHHHHHHhc-ccccchhhhhhhc-cccccHHHHHHHHhcCCCHHHHHHHHHC--CCCCCCC--CCCCHHHHH
Confidence            89999999999988886 77766      54 7789999999999  8999999999999  8999875  458999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccC-----CCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHH
Q 007677          108 VASESVELVKATMKGNEGIATLP-----DNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAV  181 (593)
Q Consensus       108 ~~~g~~~iv~~Ll~~~~~~~~~~-----~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~  181 (593)
                      +..|+.+++++|+++|++..+..     +..|.+|+|.|+..++.+++++|+++|+ .+..|..|.||||.|+..|+.++
T Consensus       157 ~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~ei  236 (437)
T PHA02795        157 ICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDL  236 (437)
T ss_pred             HHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999997542322     2347899999999999999999999999 88899999999999999999999


Q ss_pred             HHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH
Q 007677          182 ALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV  261 (593)
Q Consensus       182 v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~  261 (593)
                      ++.|++. +..++.+|..|.||||+|+..|+..  .......++++.|+++|++++...        .+.+..  ...+.
T Consensus       237 VelLL~~-GAdIN~~d~~G~TpLh~Aa~~g~~~--~~~~~~~eIvelLL~~gadI~~~~--------~~~~~~--~~~n~  303 (437)
T PHA02795        237 VSWLLEN-GANVNAVMSNGYTCLDVAVDRGSVI--ARRETHLKILEILLREPLSIDCIK--------LAILNN--TIENH  303 (437)
T ss_pred             HHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCcc--cccccHHHHHHHHHhCCCCCCchh--------HHhhhc--ccchH
Confidence            9999987 7888999999999999999988410  000112567777777777665432        122111  11256


Q ss_pred             HHHHHHHHHCC
Q 007677          262 QFLSILIREYP  272 (593)
Q Consensus       262 ~~v~~Ll~~~~  272 (593)
                      ++++.++++..
T Consensus       304 ~~ik~lI~y~~  314 (437)
T PHA02795        304 DVIKLCIKYFM  314 (437)
T ss_pred             HHHHHHHHHHH
Confidence            77777776653

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=9.3e-25  Score=192.68  Aligned_cols=239  Identities=16%  Similarity=0.063  Sum_probs=179.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      ..+..++..|-.+.-..|....    -..++..|+.-+-.|.+.|+.+++..++.-+++.+...+.+|+++++.|+-.++
T Consensus        33 a~~~~~~~m~~t~p~~~l~~~~----s~~~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s  108 (296)
T KOG0502|consen   33 AELFEQVEMGTTEPRCALTAEI----SALRNALGESLLTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGS  108 (296)
T ss_pred             HHHHHHhhccccchhHHHHHHH----HHHHHhcCCcccchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCC
Confidence            3445555555444444444331    122344555556666666666666666666665555566666666666666666


Q ss_pred             HHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHH
Q 007677          147 TEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL  225 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~  225 (593)
                      .+.+..++.++. .+..+--+.+|+.+++...+.+.+..+.+   ..++..|+.|.|||.+|+.+|+          +.+
T Consensus       109 ~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~---n~VN~~De~GfTpLiWAaa~G~----------i~v  175 (296)
T KOG0502|consen  109 VDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVN---NKVNACDEFGFTPLIWAAAKGH----------IPV  175 (296)
T ss_pred             cceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhh---ccccCccccCchHhHHHHhcCc----------hHH
Confidence            666666666666 55555666666666666666665544443   3457789999999999999999          899


Q ss_pred             HHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677          226 VESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI  305 (593)
Q Consensus       226 ~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~  305 (593)
                      +++|++.|++++...     +...++|.+|++.|..++|+.||++++|+ |..|.+ |-|||-+|++.++.++++.|++.
T Consensus       176 V~fLL~~GAdp~~lg-----k~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwN-GgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  176 VQFLLNSGADPDALG-----KYRESALSLATRGGYTDIVELLLTREVDV-NVYDWN-GGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             HHHHHHcCCChhhhh-----hhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccC-CCceeeeeecCChHHHHHHHHhc
Confidence            999999999887654     44489999999999999999999999999 899999 99999999999999999999999


Q ss_pred             cCccccccccccCCCCchhHhhhhhCCC
Q 007677          306 KPIADLMVDCTDEKGNNILHLAGELAPQ  333 (593)
Q Consensus       306 ~~~~~~lin~~D~~G~T~LH~A~~~~~~  333 (593)
                      |++    ++..|..|++++.+|+..|..
T Consensus       249 GAd----~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  249 GAD----VTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             CCC----cccccccCCcHHHHHHHhhhH
Confidence            999    889999999999999999984

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.91  E-value=5.7e-25  Score=231.80  Aligned_cols=307  Identities=15%  Similarity=0.129  Sum_probs=269.4

Q ss_pred             HHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 007677           10 QLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS   89 (593)
Q Consensus        10 ~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~   89 (593)
                      +-+.+...+.+  ..-+|..|.+||.+|+-.|+..+|+.|+.. -+++.++.|..++|+|-+||..|..++|+.||..  
T Consensus       772 ~vellv~rgan--iehrdkkgf~plImaatagh~tvV~~llk~-ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~--  846 (2131)
T KOG4369|consen  772 EVELLVVRGAN--IEHRDKKGFVPLIMAATAGHITVVQDLLKA-HADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA--  846 (2131)
T ss_pred             HHHHHHHhccc--ccccccccchhhhhhcccCchHHHHHHHhh-hhhhhhhcccccCceEEEecCCCcchHHHHHHHh--
Confidence            33344444433  337899999999999999999999999986 6778888899999999999999999999999999  


Q ss_pred             chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccc-CCcch
Q 007677           90 AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATL-PDNDGMLPIVRAASLGRTEVVEFLYRETK-NSL-KDDDC  166 (593)
Q Consensus        90 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~-~~~~g  166 (593)
                      +++-..+|....|||.+|...|..++++.|+..|+++... -.+.|.+||++|..+||.+.++.|++.+. .+. ...+.
T Consensus       847 gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNr  926 (2131)
T KOG4369|consen  847 GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNR  926 (2131)
T ss_pred             hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcccccccc
Confidence            8888889999999999999999999999999999887433 34568999999999999999999999987 333 45567


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhh
Q 007677          167 IELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIE  246 (593)
Q Consensus       167 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  246 (593)
                      +|.|-+|+..|+.+++..||.. ......|.+.|.|||+-+++.|+          +++-+.|+..|++.+....   -.
T Consensus       927 nTaltla~fqgr~evv~lLLa~-~anvehRaktgltplme~AsgGy----------vdvg~~li~~gad~nasPv---p~  992 (2131)
T KOG4369|consen  927 NTALTLALFQGRPEVVFLLLAA-QANVEHRAKTGLTPLMEMASGGY----------VDVGNLLIAAGADTNASPV---PN  992 (2131)
T ss_pred             ccceeeccccCcchHHHHHHHH-hhhhhhhcccCCcccchhhcCCc----------cccchhhhhcccccccCCC---CC
Confidence            8999999999999999999988 66777899999999999999999          8999999999999876432   12


Q ss_pred             cchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHh
Q 007677          247 QPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHL  326 (593)
Q Consensus       247 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~  326 (593)
                      .-.|+|-+++..||...+..|+...+.+ ..++++ |.|+|.+|+..|+...+.+|++++++    .+..|+.-+|++.-
T Consensus       993 T~dtalti~a~kGh~kfv~~lln~~atv-~v~Nkk-G~T~Lwla~~Gg~lss~~il~~~~ad----~d~qdnr~~S~~ma 1066 (2131)
T KOG4369|consen  993 TWDTALTIPANKGHTKFVPKLLNGDATV-RVPNKK-GCTVLWLASAGGALSSCPILVSSVAD----ADQQDNRTNSRTMA 1066 (2131)
T ss_pred             cCCccceeecCCCchhhhHHhhCCccce-ecccCC-CCcccchhccCCccccchHHhhcccC----hhhhhcccccccHH
Confidence            3368999999999999999999888877 889999 99999999999999999999999999    67899999999999


Q ss_pred             hhhhCCCcccccccC
Q 007677          327 AGELAPQHRLNVVSG  341 (593)
Q Consensus       327 A~~~~~~~~~~~l~~  341 (593)
                      |.+.|+.++|.....
T Consensus      1067 afRKgh~~iVk~mv~ 1081 (2131)
T KOG4369|consen 1067 AFRKGHFAIVKKMVP 1081 (2131)
T ss_pred             HHHhchhheeccccC
Confidence            999999999876543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.7e-24  Score=191.00  Aligned_cols=269  Identities=17%  Similarity=0.169  Sum_probs=192.8

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      |...-..++.+...|-.+--..+......    ..+..|+.-+-.|.+.|+.+++..++... +..+...+..|+.++|.
T Consensus        28 ns~q~a~~~~~~~m~~t~p~~~l~~~~s~----~~~~lge~~~~~~~~s~nsd~~v~s~~~~-~~~~~~t~p~g~~~~~v  102 (296)
T KOG0502|consen   28 NSTQIAELFEQVEMGTTEPRCALTAEISA----LRNALGESLLTVAVRSGNSDVAVQSAQLD-PDAIDETDPEGWSALLV  102 (296)
T ss_pred             ChHHHHHHHHHhhccccchhHHHHHHHHH----HHHhcCCcccchhhhcCCcHHHHHhhccC-CCCCCCCCchhhhhhhh
Confidence            33344555666665555554544443211    12455666666777777777776666654 23344445557777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                      |+-.|+.+.+..++.+++.. +..+..+++|+.+++..-+.+.+..+.++. .+..|..|.|||.+|+..|+..+++.||
T Consensus       103 ~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhql~L~~~~~~~~n~-VN~~De~GfTpLiWAaa~G~i~vV~fLL  180 (296)
T KOG0502|consen  103 AAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQLHLDVVDLLVNNK-VNACDEFGFTPLIWAAAKGHIPVVQFLL  180 (296)
T ss_pred             cCCCCCcceeeeeecccccC-CccccccCChhhHHHHHHHHHHHHHHhhcc-ccCccccCchHhHHHHhcCchHHHHHHH
Confidence            77777777777777776664 556666777777777766666666555443 3666777777777777777777777777


Q ss_pred             HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677          187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI  266 (593)
Q Consensus       187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~  266 (593)
                      ++ +.++....+...++|.+|++.|+          .++++.|++++.++|..+     .+|-|||.+|++.|+.++++.
T Consensus       181 ~~-GAdp~~lgk~resALsLAt~ggy----------tdiV~lLL~r~vdVNvyD-----wNGgTpLlyAvrgnhvkcve~  244 (296)
T KOG0502|consen  181 NS-GADPDALGKYRESALSLATRGGY----------TDIVELLLTREVDVNVYD-----WNGGTPLLYAVRGNHVKCVES  244 (296)
T ss_pred             Hc-CCChhhhhhhhhhhHhHHhcCCh----------HHHHHHHHhcCCCcceec-----cCCCceeeeeecCChHHHHHH
Confidence            76 55566666777788888888887          788888888887777655     788999999999999999999


Q ss_pred             HHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhH
Q 007677          267 LIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILH  325 (593)
Q Consensus       267 Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH  325 (593)
                      ||+.|+++ +..|.. |++++..|+..|.. +|+.++++-..    .+.+|+.-.||+|
T Consensus       245 Ll~sGAd~-t~e~ds-Gy~~mdlAValGyr-~Vqqvie~h~l----kl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  245 LLNSGADV-TQEDDS-GYWIMDLAVALGYR-IVQQVIEKHAL----KLCQDSEKRTPLH  296 (296)
T ss_pred             HHhcCCCc-cccccc-CCcHHHHHHHhhhH-HHHHHHHHHHH----HHhhcccCCCCCC
Confidence            99999999 788888 99999999999987 88888887666    6789999999987

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=5.4e-23  Score=232.87  Aligned_cols=178  Identities=17%  Similarity=0.200  Sum_probs=132.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      +.++.++||.||..|+.++++.|++.  |+++|.+|..|+||||+|+..|+.++++.|+++|+++ +.+|.+|.||||+|
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~--G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A  598 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKA--KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNA  598 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHH
Confidence            44556777777777777777777776  6777777777777777777777777777777777775 66777777777777


Q ss_pred             HHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677          142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE  221 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~  221 (593)
                      +..|+.+++++|++.+.                                 .                             
T Consensus       599 ~~~g~~~iv~~L~~~~~---------------------------------~-----------------------------  616 (823)
T PLN03192        599 ISAKHHKIFRILYHFAS---------------------------------I-----------------------------  616 (823)
T ss_pred             HHhCCHHHHHHHHhcCc---------------------------------c-----------------------------
Confidence            77777777777664332                                 0                             


Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHH
Q 007677          222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF  301 (593)
Q Consensus       222 ~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~  301 (593)
                                    .+.       ..|.++||.|+..|+.++++.|+++|+++ +.+|.. |+||||+|+..|+.+++++
T Consensus       617 --------------~~~-------~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~-G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        617 --------------SDP-------HAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQ-GATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             --------------cCc-------ccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCC-CCCHHHHHHHCCcHHHHHH
Confidence                          000       23367888888888888888888888888 788888 8899999988888889998


Q ss_pred             HhcccCccccccccccCCC-CchhHhhhhhC
Q 007677          302 IYDIKPIADLMVDCTDEKG-NNILHLAGELA  331 (593)
Q Consensus       302 Ll~~~~~~~~lin~~D~~G-~T~LH~A~~~~  331 (593)
                      |+++|++    ++.+|..| .||++++....
T Consensus       674 Ll~~GAd----v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        674 LIMNGAD----VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHcCCC----CCCCCCCCCCCHHHHHHHHH
Confidence            8888888    67788877 88888876543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.89  E-value=1.5e-22  Score=228.15  Aligned_cols=240  Identities=18%  Similarity=0.159  Sum_probs=180.5

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH-HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF-YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        63 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      ..++++++.|++.|+.+.|+.+++...+.++|..|..|+|||| .|+.+++.++++.|+++|+     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            3568999999999999999999987546788999999999999 8889999999999999886     577899999999


Q ss_pred             HHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677          142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE  221 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~  221 (593)
                      +.+ +.+.++.++......  +..+..+              .+.   .+.....+..|.||||+|+..++         
T Consensus        90 ~~~-~~~~v~~ll~~l~~~--~~~~~~~--------------~~~---~~~~~~~~~~G~TpLhlAa~~~~---------  140 (743)
T TIGR00870        90 SLE-YVDAVEAILLHLLAA--FRKSGPL--------------ELA---NDQYTSEFTPGITALHLAAHRQN---------  140 (743)
T ss_pred             Hhc-cHHHHHHHHHHHhhc--ccccCch--------------hhh---ccccccccCCCCcHHHHHHHhCC---------
Confidence            873 344444444332200  0000000              000   01112234679999999999999         


Q ss_pred             HHHHHHHHHHHHHhcChHHHH---------HHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHH
Q 007677          222 AETLVESLWEEVILLSKQEIW---------ELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVK  292 (593)
Q Consensus       222 ~~~~~~~L~~~~~~~~~~~~~---------~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~  292 (593)
                       .++++.|+++|++++.....         .....|.||||.|+..|+.++++.|+++++|+ +.+|.. |+||||+|+.
T Consensus       141 -~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi-n~~d~~-g~T~Lh~A~~  217 (743)
T TIGR00870       141 -YEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI-LTADSL-GNTLLHLLVM  217 (743)
T ss_pred             -HHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch-hhHhhh-hhHHHHHHHh
Confidence             99999999999988743210         11235899999999999999999999999988 789999 9999999999


Q ss_pred             cC---------chhHHHHHhcccCcc---ccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          293 NR---------LEDLFKFIYDIKPIA---DLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       293 ~~---------~~~iv~~Ll~~~~~~---~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      .+         ...+.+++++.++..   ..+.+.+|++|+||||+|+..|+.++++.+
T Consensus       218 ~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       218 ENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            87         334566666655442   112367899999999999999998766544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=3e-22  Score=226.77  Aligned_cols=176  Identities=15%  Similarity=0.131  Sum_probs=159.7

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF  105 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh  105 (593)
                      .+..+.++||.||..|+.+.++.|++. +.+++.. |..|+||||+|+..|+.++|+.|+++  |++++.+|.+|+||||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~-G~d~n~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~--gadin~~d~~G~TpL~  596 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKA-KLDPDIG-DSKGRTPLHIAASKGYEDCVLVLLKH--ACNVHIRDANGNTALW  596 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcChHHHHHHHHhc--CCCCCCcCCCCCCHHH
Confidence            455677999999999999999999986 8899987 99999999999999999999999998  8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHH
Q 007677          106 YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQ  184 (593)
Q Consensus       106 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~  184 (593)
                      +|+..|+.++++.|++.++..   ....|.+|||.|+..|+.+++++|+++++ .+..|.+|.||||.|+..|+.++++.
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            999999999999999887653   24567799999999999999999999999 88899999999999999999999999


Q ss_pred             HHHhcchhhhccccCC-ccHHHHHHh
Q 007677          185 LLHDHRYLATKRAKNK-ETALHVLAR  209 (593)
Q Consensus       185 Ll~~~~~~~~~~d~~g-~t~Lh~a~~  209 (593)
                      |+++ +.+++..|..| .+|++.+..
T Consensus       674 Ll~~-GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        674 LIMN-GADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHc-CCCCCCCCCCCCCCHHHHHHH
Confidence            9987 67778888887 888876543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=5.1e-23  Score=211.84  Aligned_cols=222  Identities=22%  Similarity=0.213  Sum_probs=193.4

Q ss_pred             CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      +..|.+|.|.||.|+.+|+.++++.|++. .+.+... +..|.+|||+|+..|+.|+|+.|+.+  +..+|.++..|.||
T Consensus        43 n~qd~~gfTalhha~Lng~~~is~llle~-ea~ldl~-d~kg~~plhlaaw~g~~e~vkmll~q--~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   43 NLQDYSGFTLLHHAVLNGQNQISKLLLDY-EALLDLC-DTKGILPLHLAAWNGNLEIVKMLLLQ--TDILNAVNIENETP  118 (854)
T ss_pred             cccCccchhHHHHHHhcCchHHHHHHhcc-hhhhhhh-hccCcceEEehhhcCcchHHHHHHhc--ccCCCcccccCcCc
Confidence            36688999999999999999999988875 6666666 78999999999999999999999999  77899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      ||.|+..||.+++.+|+.+|++. .++|+.+.|+|.+|++.|+.++++.|++..-                     ....
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~---------------------~~~~  176 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKF---------------------PVQS  176 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhcc---------------------chhh
Confidence            99999999999999999999995 8999999999999999999999999998721                     0000


Q ss_pred             HHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHH
Q 007677          184 QLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQF  263 (593)
Q Consensus       184 ~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~  263 (593)
                        +..-+  ...++..+-+|||.|++.|+          .++++.|++.|.+++...      +.-|+||.|+..|..++
T Consensus       177 --~~~~~--~~~~~~~~~~plHlaakngh----------~~~~~~ll~ag~din~~t------~~gtalheaalcgk~ev  236 (854)
T KOG0507|consen  177 --SLRVG--DIKRPFPAIYPLHLAAKNGH----------VECMQALLEAGFDINYTT------EDGTALHEAALCGKAEV  236 (854)
T ss_pred             --cccCC--CCCCCCCCcCCcchhhhcch----------HHHHHHHHhcCCCccccc------ccchhhhhHhhcCcchh
Confidence              11223  34578889999999999999          999999999999988764      23799999999999999


Q ss_pred             HHHHHHHCCCccccccCCCCchHHHHHHHc
Q 007677          264 LSILIREYPDLMWKADKKDNYTIFHIAVKN  293 (593)
Q Consensus       264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~  293 (593)
                      |..|++.|-+. ..+|.+ |+|+|.+-...
T Consensus       237 vr~ll~~gin~-h~~n~~-~qtaldil~d~  264 (854)
T KOG0507|consen  237 VRFLLEIGINT-HIKNQH-GQTALDIIIDL  264 (854)
T ss_pred             hhHHHhhcccc-cccccc-chHHHHHHHhc
Confidence            99999999887 788999 99999887653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=2.9e-22  Score=199.86  Aligned_cols=232  Identities=18%  Similarity=0.233  Sum_probs=181.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      -.+.-|+..|+.+.++.|+.. ++.++.. +.+|.|+||-+|...+.+||++|++.  +++||.+|..|+||||.|+..|
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~-n~DglTalhq~~id~~~e~v~~l~e~--ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLC-NVDGLTALHQACIDDNLEMVKFLVEN--GANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCcccc-CCccchhHHHHHhcccHHHHHHHHHh--cCCccccccccCCcchhhcccc
Confidence            456778999999999999987 6777776 99999999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcch
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRY  191 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  191 (593)
                      |..++++|+++|+++ ...|.+|..|+..+..-...++...-.....                    .+     ++.   
T Consensus       118 ~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~g--------------------i~-----iea---  168 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQG--------------------ID-----IEA---  168 (527)
T ss_pred             cHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhc--------------------cc-----HHH---
Confidence            999999999999997 7789999999887655444433332221110                    00     000   


Q ss_pred             hhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHC
Q 007677          192 LATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREY  271 (593)
Q Consensus       192 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~  271 (593)
                         .+....++-                   .+=+...+..|...+..+     ..|.|.||+|+.+|..++.+.|++.+
T Consensus       169 ---~R~~~e~~m-------------------l~D~~q~l~~G~~~d~~~-----~rG~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  169 ---ARKAEEQTM-------------------LDDARQWLNAGAELDARH-----ARGATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             ---HhhhhHHHH-------------------HHHHHHHHhccccccccc-----cccchHHHHHHhhhHHHHHHHHHHhc
Confidence               011111111                   112222233444444433     34899999999999999999999999


Q ss_pred             CCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhh
Q 007677          272 PDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE  329 (593)
Q Consensus       272 ~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~  329 (593)
                      .++ +.+|.+ |+||||.|+..|+.+++++|+++|++    ++.+...|.||+.+|..
T Consensus       222 ~~~-~~~D~d-gWtPlHAAA~Wg~~~~~elL~~~ga~----~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  222 YSV-NIKDYD-GWTPLHAAAHWGQEDACELLVEHGAD----MDAKTKMGETPLDVADE  273 (527)
T ss_pred             cCc-cccccc-CCCcccHHHHhhhHhHHHHHHHhhcc----cchhhhcCCCCccchhh
Confidence            998 789998 99999999999999999999999998    77889999999999876

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=1.8e-20  Score=171.23  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=110.0

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhh-----CccccccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCchhhhc
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDK-----YEGEIGVEITNHGKTALHVAAEANR----IDFVKKLLKRMSAEDLAK   95 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~-----~~~~~~~~~~~~g~T~Lh~Aa~~g~----~~~v~~Ll~~~~~~~~~~   95 (593)
                      .+|..|.||||.|+..|+.++++.|+..     .+.+++.+ |..|+||||+|+..|+    .+++++|++.  +++++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~-d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~--gadin~   92 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNAT-DDAGQMCIHIAAEKHEAQLAAEIIDHLIEL--GADINA   92 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhcc-CCCCCcHHHHHHHcCChHHHHHHHHHHHHc--CCCCCC
Confidence            4477889999999999999999987542     24667766 8889999999999998    5888899888  788888


Q ss_pred             hhc-CCChHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677           96 QNK-IGCTAVFYAVASESVELVKATMK-GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus        96 ~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      +|. .|+||||+|+..++.+++++|++ .|+++ +..|.+|+||||+|+..++.+++++|++.++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            885 89999999999999999999997 47776 7888899999999999999999999988765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=5.1e-21  Score=181.36  Aligned_cols=179  Identities=23%  Similarity=0.274  Sum_probs=156.5

Q ss_pred             CCHHHHHHHHhhCcc--------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHc--
Q 007677           41 GDWAVAKDIYDKYEG--------EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS--  110 (593)
Q Consensus        41 g~~~~v~~Ll~~~~~--------~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~--  110 (593)
                      -+.+.|+..+..+++        -+|.. |.+|+|+||||+..+++++|+.||+.+ -++++.+|+.|.||.++|+..  
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNla-DsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~l  314 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLA-DSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKL  314 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhh-cCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhh
Confidence            357778776665432        24555 899999999999999999999999996 688999999999999999854  


Q ss_pred             ---CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          111 ---ESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       111 ---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                         .+.++|..|...| +++..-...|.|+|++|+.+|+.++|+.||..++ .+..|.+|.|+|+.|+.+|+.++++.||
T Consensus       315 k~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLL  393 (452)
T KOG0514|consen  315 KQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLL  393 (452)
T ss_pred             cchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHh
Confidence               4788999999887 4445667889999999999999999999999999 9999999999999999999999999999


Q ss_pred             HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 007677          187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE  232 (593)
Q Consensus       187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~  232 (593)
                      .....+....|.+|.|+|..|...|+          .++.-.|..+
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleagh----------~eIa~mlYa~  429 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAGH----------REIAVMLYAH  429 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcCc----------hHHHHHHHHH
Confidence            99888999999999999999999999          6666665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.3e-20  Score=178.71  Aligned_cols=158  Identities=25%  Similarity=0.320  Sum_probs=144.8

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCchhhhchh-cC
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEA-----NRIDFVKKLLKRMSAEDLAKQN-KI   99 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~~d-~~   99 (593)
                      -|.+|+|+||+|+.++|.++|+.||+.+-.+++.+ |.-|.||+++|+..     .+.++|..|.+-   .++|.+- ..
T Consensus       264 aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~q-NrAGYtpiMLaALA~lk~~~d~~vV~~LF~m---gnVNaKAsQ~  339 (452)
T KOG0514|consen  264 ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQ-NRAGYTPVMLAALAKLKQPADRTVVERLFKM---GDVNAKASQH  339 (452)
T ss_pred             hcCCCCeeeeeeecccchHHHHHHhccCccccccc-ccccccHHHHHHHHhhcchhhHHHHHHHHhc---cCcchhhhhh
Confidence            37889999999999999999999999988899887 99999999999885     468899999886   4677665 46


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcC
Q 007677          100 GCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETG  177 (593)
Q Consensus       100 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~  177 (593)
                      |+|+|++|+..|+.++|+.||..|+++ +++|.+|.|+|++|+++||.|++++||....  ..+.|.+|.|+|.+|...|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            999999999999999999999999998 9999999999999999999999999998876  7789999999999999999


Q ss_pred             CHHHHHHHHHh
Q 007677          178 LYAVALQLLHD  188 (593)
Q Consensus       178 ~~~~v~~Ll~~  188 (593)
                      +.|+...|..+
T Consensus       419 h~eIa~mlYa~  429 (452)
T KOG0514|consen  419 HREIAVMLYAH  429 (452)
T ss_pred             chHHHHHHHHH
Confidence            99999888766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=7.5e-20  Score=166.30  Aligned_cols=136  Identities=13%  Similarity=0.065  Sum_probs=112.1

Q ss_pred             ccccccchHhHHHHHcCCHHHHH----HHHhhCccccccccCCCCCcHHHHHHHcCCHHH---HHHHHHcCCchhhhchh
Q 007677           25 AETITRRLKLYRAALNGDWAVAK----DIYDKYEGEIGVEITNHGKTALHVAAEANRIDF---VKKLLKRMSAEDLAKQN   97 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~----~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~---v~~Ll~~~~~~~~~~~d   97 (593)
                      ..+.++.++||.||+.|+.+.++    .|+ +.+.+++.+ |..|.||||+|+..|+.+.   +++|++.  +++++.+|
T Consensus        15 ~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~-~~g~~~~~~-d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~--Gadin~~d   90 (166)
T PHA02743         15 EIDEDEQNTFLRICRTGNIYELMEVAPFIS-GDGHLLHRY-DHHGRQCTHMVAWYDRANAVMKIELLVNM--GADINARE   90 (166)
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHHHh-hcchhhhcc-CCCCCcHHHHHHHhCccCHHHHHHHHHHc--CCCCCCCC
Confidence            34667778999999999985444    334 346777766 8899999999999988654   7899988  89999998


Q ss_pred             -cCCChHHHHHHHcCCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcc
Q 007677           98 -KIGCTAVFYAVASESVELVKATMK-GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDD  165 (593)
Q Consensus        98 -~~g~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~  165 (593)
                       ..|+||||+|+..|+.+++++|++ .|+++ ..+|..|.||||+|+..++.+++++|+++++ .+.++..
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccC
Confidence             589999999999999999999995 78886 7789999999999999999999999999887 4444433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=8.4e-20  Score=182.37  Aligned_cols=231  Identities=21%  Similarity=0.222  Sum_probs=172.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 007677           68 ALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT  147 (593)
Q Consensus        68 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  147 (593)
                      .+.-|+..|..+=|+.|+..  ++..+..|.+|.|+||-+|...+.+||++|+++|+++ +..|..|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~--ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNR--GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhcc--CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            45567888999999999998  7888999999999999999999999999999999998 88999999999999999999


Q ss_pred             HHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHH
Q 007677          148 EVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLV  226 (593)
Q Consensus       148 ~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~  226 (593)
                      .++++|+++++ ....+.+|..|+..|......++...-...          .|                          
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r----------~g--------------------------  163 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMAR----------QG--------------------------  163 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHH----------hc--------------------------
Confidence            99999999998 333444444444333222111111111100          00                          


Q ss_pred             HHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhccc
Q 007677          227 ESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIK  306 (593)
Q Consensus       227 ~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  306 (593)
                             .+++..    +.....+.|+-        + ...+..|.+. ...+.. |.|.||+|+.+|..++.++|++.|
T Consensus       164 -------i~iea~----R~~~e~~ml~D--------~-~q~l~~G~~~-d~~~~r-G~T~lHvAaa~Gy~e~~~lLl~ag  221 (527)
T KOG0505|consen  164 -------IDIEAA----RKAEEQTMLDD--------A-RQWLNAGAEL-DARHAR-GATALHVAAANGYTEVAALLLQAG  221 (527)
T ss_pred             -------ccHHHH----hhhhHHHHHHH--------H-HHHHhccccc-cccccc-cchHHHHHHhhhHHHHHHHHHHhc
Confidence                   000000    00001233322        2 2234466665 778888 999999999999999999999999


Q ss_pred             CccccccccccCCCCchhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhHH
Q 007677          307 PIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKE  382 (593)
Q Consensus       307 ~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~  382 (593)
                      .+    ++.+|.+|+||||.|+.-|..+..++|                   ..++++.+.+++.|.||++++.+.
T Consensus       222 ~~----~~~~D~dgWtPlHAAA~Wg~~~~~elL-------------------~~~ga~~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  222 YS----VNIKDYDGWTPLHAAAHWGQEDACELL-------------------VEHGADMDAKTKMGETPLDVADEE  274 (527)
T ss_pred             cC----cccccccCCCcccHHHHhhhHhHHHHH-------------------HHhhcccchhhhcCCCCccchhhh
Confidence            98    889999999999999998876543322                   237889999999999999998763

>PHA02741 hypothetical protein; Provisional

Probab=99.81  E-value=3.2e-19  Score=163.01  Aligned_cols=126  Identities=16%  Similarity=0.179  Sum_probs=113.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC----CchhhhchhcCCChHHHHHHHcCC----HHHHHHHHhcCCCCCccCCC-
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRM----SAEDLAKQNKIGCTAVFYAVASES----VELVKATMKGNEGIATLPDN-  132 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~----~~~~~~~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~~~-  132 (593)
                      +..|.||||+|++.|+.++|+.|+...    .+++++.+|..|.||||+|+..|+    .+++++|++.|+++ +.++. 
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~~~   96 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQEML   96 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCCcC
Confidence            788999999999999999999986531    157899999999999999999999    58999999999997 66774 


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-cc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          133 DGMLPIVRAASLGRTEVVEFLYRE-TK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       133 ~g~tpL~~A~~~g~~~iv~~Ll~~-~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      .|.||||+|+..++.+++++|++. +. .+..+..|.||||.|+..++.++++.|++.
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            899999999999999999999974 66 778899999999999999999999999886

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=6.9e-20  Score=165.01  Aligned_cols=130  Identities=15%  Similarity=0.155  Sum_probs=107.0

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHh----hCccccccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCchhhhchh
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYD----KYEGEIGVEITNHGKTALHVAAEANRI---DFVKKLLKRMSAEDLAKQN   97 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~~~~g~T~Lh~Aa~~g~~---~~v~~Ll~~~~~~~~~~~d   97 (593)
                      .+|.+|.||||+|+..|+...+.....    ..+..+..+ |.+|.||||+|+..|+.   +++++|++.  +++++.+|
T Consensus        12 ~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~-d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~--gadin~~~   88 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEY-NRHGKQCVHIVSNPDKADPQEKLKLLMEW--GADINGKE   88 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHh-cCCCCEEEEeecccCchhHHHHHHHHHHc--CCCccccC
Confidence            568889999999999998432221111    111123333 88999999999999987   468899998  89999998


Q ss_pred             -cCCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677           98 -KIGCTAVFYAVASESVELVKATMKG-NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus        98 -~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                       ..|+||||+|+..|+.+++++|+++ |+++ +.+|..|+||||+|+..|+.+++++|+++++
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga  150 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGA  150 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence             4899999999999999999999974 8886 7899999999999999999999999999876

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=4.4e-19  Score=151.23  Aligned_cols=145  Identities=17%  Similarity=0.174  Sum_probs=128.4

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCC
Q 007677           33 KLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES  112 (593)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~  112 (593)
                      .+..|+..|....|+.||++.+..+|.+ |.+|.||||.|+.+||.++|+.|+..  +++.+.+...|+||||-||.-++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtr-D~D~YTpLHRAaYn~h~div~~ll~~--gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTR-DEDEYTPLHRAAYNGHLDIVHELLLS--GANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccc-ccccccHHHHHHhcCchHHHHHHHHc--cCCcccccccCccchhhhhcccc
Confidence            4678999999999999999988889998 99999999999999999999999999  89999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC-HHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHH
Q 007677          113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGR-TEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAV  181 (593)
Q Consensus       113 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~  181 (593)
                      .+++..|+++|+++ +.......||||+|+...+ ...+++|+....  +...+..+.|++..|-+.+.+.-
T Consensus       143 ~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~  213 (228)
T KOG0512|consen  143 FEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHY  213 (228)
T ss_pred             hhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHH
Confidence            99999999999998 7788889999999998766 456677776555  66678888999999887765543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=6.2e-19  Score=172.59  Aligned_cols=153  Identities=13%  Similarity=0.093  Sum_probs=127.7

Q ss_pred             ccccccc-hHhHHHHHcCCHHHHHHHHhhCcccccccc---CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch-hcC
Q 007677           25 AETITRR-LKLYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ-NKI   99 (593)
Q Consensus        25 ~~~~~~~-t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~---~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-d~~   99 (593)
                      .+|..++ ++||.|+..|+.++++.|++. |++++.+.   +..|.||||+|++.|+.+++++|+++  |++++.+ +..
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~-GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~--GADVN~~~~~~  103 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKL-GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY--GADVNRYAEEA  103 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHC-CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcCcccCCC
Confidence            3466665 566777788999999999986 88888752   35899999999999999999999999  8999986 467


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCH
Q 007677          100 GCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY  179 (593)
Q Consensus       100 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~  179 (593)
                      |.||||.|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++.+++..+...+    .+..+.+|.+.+   ++.
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~n~  175 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMICDNE----ISNFYKHPKKIL---INF  175 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhcCCc----ccccccChhhhh---ccH
Confidence            999999999999999999999999997 789999999999999999998886665332    355566777764   367


Q ss_pred             HHHHHHHHh
Q 007677          180 AVALQLLHD  188 (593)
Q Consensus       180 ~~v~~Ll~~  188 (593)
                      ++++.|+.+
T Consensus       176 ei~~~Lish  184 (300)
T PHA02884        176 DILKILVSH  184 (300)
T ss_pred             HHHHHHHHH
Confidence            888888877

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=161.78  Aligned_cols=143  Identities=9%  Similarity=-0.029  Sum_probs=122.1

Q ss_pred             ccccccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHH---HHHHHhcCCCC
Q 007677           54 EGEIGVEITNHGKTALHVAAEANRI----DFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVEL---VKATMKGNEGI  126 (593)
Q Consensus        54 ~~~~~~~~~~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~i---v~~Ll~~~~~~  126 (593)
                      +.+++.. +.++.++||.||+.|+.    +++++|++.  +.+++.+|..|+||||+|+..|+.+.   +++|++.|+++
T Consensus        10 ~~~~~~~-~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~--g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743         10 NLGAVEI-DEDEQNTFLRICRTGNIYELMEVAPFISGD--GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             chHHhhh-ccCCCcHHHHHHHcCCHHHHHHHHHHHhhc--chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            3455544 67788999999999998    566677777  78899999999999999999998654   89999999997


Q ss_pred             CccCC-CCCCCHHHHHHHcCCHHHHHHHHH-hcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCc
Q 007677          127 ATLPD-NDGMLPIVRAASLGRTEVVEFLYR-ETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKE  201 (593)
Q Consensus       127 ~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~-~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~  201 (593)
                       +.++ ..|.||||+|+..|+.+++++|++ .+. .+..+..|.||||+|+..++.++++.|++. +...+.++..|.
T Consensus        87 -n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~-ga~~~~~~~~~~  162 (166)
T PHA02743         87 -NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRAN-GAVCDDPLSIGL  162 (166)
T ss_pred             -CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcccCCc
Confidence             6777 589999999999999999999995 676 777899999999999999999999999987 566666666654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=3.3e-18  Score=167.47  Aligned_cols=151  Identities=11%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             CCCCCc-HHHHHHHcCCHHHHHHHHHcCCchhhhchh----cCCChHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCC
Q 007677           62 TNHGKT-ALHVAAEANRIDFVKKLLKRMSAEDLAKQN----KIGCTAVFYAVASESVELVKATMKGNEGIATL-PDNDGM  135 (593)
Q Consensus        62 ~~~g~T-~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d----~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~  135 (593)
                      |..|.| +||.|+..|+.++|++|+++  |++++.++    ..|.||||+|++.|+.+++++|+++|+++ +. .+..|.
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~--GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~  105 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKL--GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKI  105 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHC--CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCC
Confidence            555555 67777778999999999999  89999874    68999999999999999999999999997 55 456899


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCc
Q 007677          136 LPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGD  214 (593)
Q Consensus       136 tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~  214 (593)
                      ||||+|+..|+.+++++|+++|+ .+..+..|.||||.|+..++.+++..+...      ..+..+.+|++++.   +  
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---n--  174 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKILI---N--  174 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhhc---c--
Confidence            99999999999999999999999 888999999999999999988887555422      25667788888753   3  


Q ss_pred             ccccchhHHHHHHHHHHHHH
Q 007677          215 KDRKNKEAETLVESLWEEVI  234 (593)
Q Consensus       215 ~~~~~~~~~~~~~~L~~~~~  234 (593)
                              .++++.|++++.
T Consensus       175 --------~ei~~~Lish~v  186 (300)
T PHA02884        175 --------FDILKILVSHFI  186 (300)
T ss_pred             --------HHHHHHHHHHHH
Confidence                    688899988887

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=3.5e-17  Score=171.53  Aligned_cols=263  Identities=15%  Similarity=0.169  Sum_probs=179.3

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhC--------ccccccccCCCCCcHHHHHHH---cCCHHHHHHHHHcCCchhhhc----h
Q 007677           32 LKLYRAALNGDWAVAKDIYDKY--------EGEIGVEITNHGKTALHVAAE---ANRIDFVKKLLKRMSAEDLAK----Q   96 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~--------~~~~~~~~~~~g~T~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~----~   96 (593)
                      .++..|...|+.+..+.++...        ..+++.+ ...|+|.||.|..   .++.++++.|++.. +..+|.    .
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~-p~lind~~~~e  180 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIF-PKLINDIYTSE  180 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHh-HHHhhhhhhhH
Confidence            6677777778777777666542        1345554 6678888888877   35567888888775 443332    2


Q ss_pred             hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHc
Q 007677           97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIET  176 (593)
Q Consensus        97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~  176 (593)
                      ...|.||||.|+.+.+.++|+.|++.|+|+ +.+           | .|..     .      ...|..+..      . 
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aR-----------a-~G~F-----F------~~~dqk~~r------k-  229 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADV-HAR-----------A-CGAF-----F------CPDDQKASR------K-  229 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCch-hhH-----------h-hccc-----c------Ccccccccc------c-
Confidence            356888888888888888888888888876 211           1 1110     0      000000000      0 


Q ss_pred             CCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHH
Q 007677          177 GLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAA  256 (593)
Q Consensus       177 ~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa  256 (593)
                               ...+.    -.=..|+.||.+||..++          .+++++|+++|+|++.+|     .+|+|.||..+
T Consensus       230 ---------~T~Y~----G~~YfGEyPLSfAAC~nq----------~eivrlLl~~gAd~~aqD-----S~GNTVLH~lV  281 (782)
T KOG3676|consen  230 ---------STNYT----GYFYFGEYPLSFAACTNQ----------PEIVRLLLAHGADPNAQD-----SNGNTVLHMLV  281 (782)
T ss_pred             ---------ccCCc----ceeeeccCchHHHHHcCC----------HHHHHHHHhcCCCCCccc-----cCCChHHHHHH
Confidence                     00000    012358999999999998          999999999999999776     89999999999


Q ss_pred             HcCcHHHHHHHHHHCCC--ccccccCCCCchHHHHHHHcCchhHHHHHhcccCc--------cc--cccccccC--CCCc
Q 007677          257 DRGNVQFLSILIREYPD--LMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI--------AD--LMVDCTDE--KGNN  322 (593)
Q Consensus       257 ~~g~~~~v~~Ll~~~~~--~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~--------~~--~lin~~D~--~G~T  322 (593)
                      ..-..++.+.+++++++  . ..+|.. |-|||.+|++-|+.++++.+++....        ..  ..++..|.  +.++
T Consensus       282 i~~~~~My~~~L~~ga~~l~-~v~N~q-gLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~S  359 (782)
T KOG3676|consen  282 IHFVTEMYDLALELGANALE-HVRNNQ-GLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENS  359 (782)
T ss_pred             HHHHHHHHHHHHhcCCCccc-cccccC-CCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhh
Confidence            99999999999999988  5 678888 99999999999999999999987111        00  01444554  5678


Q ss_pred             hhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhh
Q 007677          323 ILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKD  358 (593)
Q Consensus       323 ~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~  358 (593)
                      +|.+.+.....+-..++.| .++---+-+|....++
T Consensus       360 vLeivvyg~~~eHl~Ll~~-~i~~LL~~KW~~f~k~  394 (782)
T KOG3676|consen  360 VLEIVVYGIKNEHLELLDG-PIEELLEDKWKAFGKK  394 (782)
T ss_pred             hhhhhhcCCcHHHHHHHhH-HHHHHHHHHHHHHhHH
Confidence            8999887755555555555 5555556667554443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=1.1e-17  Score=150.58  Aligned_cols=124  Identities=15%  Similarity=0.058  Sum_probs=104.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC-----CchhhhchhcCCChHHHHHHHcCCH---HHHHHHHhcCCCCCccCC-C
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRM-----SAEDLAKQNKIGCTAVFYAVASESV---ELVKATMKGNEGIATLPD-N  132 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~-----~~~~~~~~d~~g~TpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~~-~  132 (593)
                      |.+|.||||+|++.|+.  ++.+....     .+..++.+|.+|.||||+|+..|+.   +++++|++.|+++ +.++ .
T Consensus        14 d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~   90 (154)
T PHA02736         14 DIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERV   90 (154)
T ss_pred             CCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCC
Confidence            78899999999999983  33333221     0223567899999999999999987   4689999999997 6676 5


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHh-cc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          133 DGMLPIVRAASLGRTEVVEFLYRE-TK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       133 ~g~tpL~~A~~~g~~~iv~~Ll~~-~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      .|.||||+|+..|+.+++++|+++ +. .+..+..|.||||.|+..|+.++++.|+..
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999999999999985 65 778899999999999999999999999886

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.72  E-value=4.2e-17  Score=139.22  Aligned_cols=143  Identities=20%  Similarity=0.206  Sum_probs=124.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      -.+-+|+..+....|+.|++.. ..-+|.+|.+|.||||.|+.+||.+||+.|+..|++. ..+...|+||||-||.-.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccc
Confidence            3577899999999999999983 3449999999999999999999999999999999996 8899999999999999999


Q ss_pred             HHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCH-HHHHHHHHhcchhhhccccCCccHHHHHHhcC
Q 007677          147 TEVVEFLYRETK-NSLKDDDCIELLVQLIETGLY-AVALQLLHDHRYLATKRAKNKETALHVLARKN  211 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~  211 (593)
                      .+++..|+++|+ .+.......||||.|+...+. +.+..|+......+..++..+.||+.+|-+.+
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999 888888889999999987665 44555666555566677888999999987654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.2e-17  Score=153.54  Aligned_cols=112  Identities=23%  Similarity=0.299  Sum_probs=85.8

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      ..|..|.+|||+||+.|+..+++.|+.+ |+.+|.. +-..+||||+|+..||-++|+.|++.  .+|+|..|..|+|||
T Consensus        29 ~gddhgfsplhwaakegh~aivemll~r-garvn~t-nmgddtplhlaaahghrdivqkll~~--kadvnavnehgntpl  104 (448)
T KOG0195|consen   29 VGDDHGFSPLHWAAKEGHVAIVEMLLSR-GARVNST-NMGDDTPLHLAAAHGHRDIVQKLLSR--KADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccCcchhhhhhhcccHHHHHHHHhc-ccccccc-cCCCCcchhhhhhcccHHHHHHHHHH--hcccchhhccCCCch
Confidence            4577777888888888888888877776 6667665 55567788888888888888888877  677888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      ||||.-|...+++-|+..|+.+ ++.|++|.|||.-|
T Consensus       105 hyacfwgydqiaedli~~ga~v-~icnk~g~tpldka  140 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKA  140 (448)
T ss_pred             hhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhh
Confidence            8888888888888888887776 77778888887655

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.70  E-value=9.5e-18  Score=154.33  Aligned_cols=136  Identities=19%  Similarity=0.232  Sum_probs=123.6

Q ss_pred             HHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHH
Q 007677           35 YRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVE  114 (593)
Q Consensus        35 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~  114 (593)
                      +--|+.|+.-.|+..|+....|+|.- |..|-+|||+||+.||..+|+.|+.+  |+.+|..|.-.+||||+|+..||-+
T Consensus         5 f~wcregna~qvrlwld~tehdln~g-ddhgfsplhwaakegh~aivemll~r--garvn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    5 FGWCREGNAFQVRLWLDDTEHDLNVG-DDHGFSPLHWAAKEGHVAIVEMLLSR--GARVNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhhhhcCCeEEEEEEecCcccccccc-cccCcchhhhhhhcccHHHHHHHHhc--ccccccccCCCCcchhhhhhcccHH
Confidence            33466677666777777778888877 88999999999999999999999999  8999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHH
Q 007677          115 LVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLI  174 (593)
Q Consensus       115 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~  174 (593)
                      +|+.|+++.+++ +..|..|.|||||||.-|...+.+-|+..|+ .+..+++|.||+..|-
T Consensus        82 ivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   82 IVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            999999999997 8999999999999999999999999999999 8889999999998763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.66  E-value=1.4e-15  Score=131.35  Aligned_cols=124  Identities=31%  Similarity=0.457  Sum_probs=101.9

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF  105 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh  105 (593)
                      .|.+|.||||.|+..|+.+.++.|++. +.+.+.+ +..|.||||.|+..++.+++++|++.  +.+++..|..|.||+|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~-~~~~~~~-~~~g~~~l~~a~~~~~~~~~~~ll~~--~~~~~~~~~~~~~~l~   78 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEK--GADVNARDKDGNTPLH   78 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHH
Confidence            467788889999988888888888876 4444444 77888899999888888888888888  6677788888888999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007677          106 YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLY  154 (593)
Q Consensus       106 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  154 (593)
                      .|+..++.+++++|++++.+. ...+..|.||+++|...++.+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            988888888888888888665 667788888898888888888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=4e-16  Score=126.34  Aligned_cols=85  Identities=36%  Similarity=0.539  Sum_probs=67.8

Q ss_pred             hHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCH
Q 007677           34 LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESV  113 (593)
Q Consensus        34 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~  113 (593)
                      ||.||+.|+.++++.|++. +.+++.     |+||||+|+..|+.+++++|++.  +++++.+|..|+||||+|+..|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~-~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK-GADINL-----GNTALHYAAENGNLEIVKLLLEN--GADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT-TSTTTS-----SSBHHHHHHHTTTHHHHHHHHHT--TTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHC-cCCCCC-----CCCHHHHHHHcCCHHHHHHHHHh--cccccccCCCCCCHHHHHHHcCCH
Confidence            6888888888888888885 444432     78888888888888888888887  788888888888888888888888


Q ss_pred             HHHHHHHhcCCCC
Q 007677          114 ELVKATMKGNEGI  126 (593)
Q Consensus       114 ~iv~~Ll~~~~~~  126 (593)
                      +++++|+++|+++
T Consensus        73 ~~~~~Ll~~g~~~   85 (89)
T PF12796_consen   73 EIVKLLLEHGADV   85 (89)
T ss_dssp             HHHHHHHHTTT-T
T ss_pred             HHHHHHHHcCCCC
Confidence            8888888888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.64  E-value=1.1e-15  Score=123.73  Aligned_cols=83  Identities=30%  Similarity=0.491  Sum_probs=77.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH
Q 007677           69 LHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTE  148 (593)
Q Consensus        69 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~  148 (593)
                      ||+|++.|+.+++++|++.  +.+++.    |+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~--~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEK--GADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHT--TSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHC--cCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            7999999999999999997  666666    899999999999999999999999997 888899999999999999999


Q ss_pred             HHHHHHHhcc
Q 007677          149 VVEFLYRETK  158 (593)
Q Consensus       149 iv~~Ll~~~~  158 (593)
                      ++++|+++++
T Consensus        74 ~~~~Ll~~g~   83 (89)
T PF12796_consen   74 IVKLLLEHGA   83 (89)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHcCC
Confidence            9999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=3.9e-15  Score=128.45  Aligned_cols=122  Identities=28%  Similarity=0.401  Sum_probs=111.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      |.+|.||||+|+..|+.+++++|++.  +.+.+..+..|.||||.|+..++.++++.|++.++.+ +..+..|.||+|+|
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~--~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a   80 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLEN--GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLA   80 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHH
Confidence            67899999999999999999999999  6777889999999999999999999999999999875 67789999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                      +..++.+++++|++.+. .+..+..+.+|++.|...++.++++.|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999876 6667888999999999999999888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.62  E-value=2.8e-15  Score=157.48  Aligned_cols=166  Identities=17%  Similarity=0.204  Sum_probs=145.9

Q ss_pred             ccCCCccccccchHhHHHHH---cCCHHHHHHHHhhCccccccc---cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhh
Q 007677           20 DEQLPAETITRRLKLYRAAL---NGDWAVAKDIYDKYEGEIGVE---ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL   93 (593)
Q Consensus        20 ~~~~~~~~~~~~t~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~---~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~   93 (593)
                      +...+.+-..|.|.||.|..   .++.++++.|++..|..+|..   ..-.|+||||+|+.+.+.++|++|++.  |+|+
T Consensus       133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~--gADV  210 (782)
T KOG3676|consen  133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAA--GADV  210 (782)
T ss_pred             hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHc--CCch
Confidence            34455667789999999987   355689999999988777643   235799999999999999999999999  7887


Q ss_pred             hchh-----------------------cCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH
Q 007677           94 AKQN-----------------------KIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVV  150 (593)
Q Consensus        94 ~~~d-----------------------~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv  150 (593)
                      +.+-                       ..|+.||-+||..++.|++++|+++|+|+ +.+|..|.|.||..+.+-..+|.
T Consensus       211 ~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-~aqDS~GNTVLH~lVi~~~~~My  289 (782)
T KOG3676|consen  211 HARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADP-NAQDSNGNTVLHMLVIHFVTEMY  289 (782)
T ss_pred             hhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCC-CccccCCChHHHHHHHHHHHHHH
Confidence            6531                       24889999999999999999999999996 99999999999999999999999


Q ss_pred             HHHHHhcc---cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          151 EFLYRETK---NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       151 ~~Ll~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      .++++.++   ....+..|-|||-.|++.|..++.+.+++.
T Consensus       290 ~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  290 DLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999998   456899999999999999999999999998

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=5.1e-15  Score=112.90  Aligned_cols=103  Identities=20%  Similarity=0.268  Sum_probs=91.3

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      -...+++++|+.+.|+..+.+ +.++|..  -.|+||||+|+..|+.+++++|+..  |++++.+|++|-|||.-|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~-g~nVn~~--~ggR~plhyAAD~GQl~ilefli~i--GA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE-GLNVNEI--YGGRTPLHYAADYGQLSILEFLISI--GANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc-cccHHHH--hCCcccchHhhhcchHHHHHHHHHh--ccccCCccccCCcHHHHHHHHh
Confidence            346788999999999999987 5677754  4799999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHH
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVR  140 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~  140 (593)
                      |.++|++|++.|++- ..+..+|.+.+..
T Consensus        79 H~~cVklLL~~GAdr-t~~~PdG~~~~ea  106 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADR-TIHAPDGTALIEA  106 (117)
T ss_pred             hHHHHHHHHHcCccc-ceeCCCchhHHhh
Confidence            999999999999995 7788888776654

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=4.2e-13  Score=128.85  Aligned_cols=125  Identities=24%  Similarity=0.327  Sum_probs=90.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCC-----HHHHHHHHhcCC--CCCccCCCCC
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES-----VELVKATMKGNE--GIATLPDNDG  134 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~~~g  134 (593)
                      +..+.+++|.|+..+..+++++++..  +.+++.+|..|.||||+|+..|+     .++++.|++.|+  +....+|..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLAS--GADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHc--CCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            45567777777777777777777776  66677777777777777777777     777777777777  4556667777


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          135 MLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       135 ~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      .||||+|+..|+.+++++|++.++ .+..+..|.|+++.|+..++.+++..+++.
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            777777777777777777777776 555667777777777777777777777665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.47  E-value=2e-13  Score=104.28  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=91.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      --..+++++|..+-|+..+..  +.++|..- .|+||||+|+-.|+.+++++|+..|+++ +.+|+.|.|||.-|+..||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~--g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH   79 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNE--GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH   79 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHc--cccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh
Confidence            356788999999999999988  77787655 7999999999999999999999999998 8899999999999999999


Q ss_pred             HHHHHHHHHhcc-cccCCcchhHHHHHH
Q 007677          147 TEVVEFLYRETK-NSLKDDDCIELLVQL  173 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A  173 (593)
                      .++|++|+++|+ .....++|.+.+..+
T Consensus        80 ~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   80 RDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999 666778888776544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.46  E-value=1.4e-12  Score=125.21  Aligned_cols=130  Identities=25%  Similarity=0.340  Sum_probs=118.6

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCch---hhh
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANR-----IDFVKKLLKRMSAE---DLA   94 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~-----~~~v~~Ll~~~~~~---~~~   94 (593)
                      ....+..+.+++|.++..++.+.++.++.. +.+++.+ +..|.||||+|+..|+     .++++.|++.  ++   ..+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~--g~~~~~~~  141 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAK-DADGDTPLHLAALNGNPPEGNIEVAKLLLEA--GADLDVNN  141 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHc-CCCcccc-cCCCCcHHHHHHhcCCcccchHHHHHHHHHc--CCCCCCcc
Confidence            335567789999999999999999888886 7788776 9999999999999999     9999999999  66   677


Q ss_pred             chhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677           95 KQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET  157 (593)
Q Consensus        95 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  157 (593)
                      .+|..|+||||+|+..|+.++++.|++.|++. ..++..|.|+++.|+..++.++++.+++.+
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            78999999999999999999999999999996 778999999999999999999999999865

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=2.8e-13  Score=134.58  Aligned_cols=121  Identities=21%  Similarity=0.260  Sum_probs=103.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ..|..|+..|.++.|+.++.+ -.|+... |..|-|+||-|+-.||.+||++||+.  |+++|..|.+|+||||+|+..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~e-v~DpSqp-NdEGITaLHNAiCaghyeIVkFLi~~--ganVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYE-VTDPSQP-NDEGITALHNAICAGHYEIVKFLIEF--GANVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHh-hcCCCCC-CccchhHHhhhhhcchhHHHHHHHhc--CCcccCccCCCCchhhhhhhcC
Confidence            456679999999999999987 4455544 78899999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHHh
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVRA--ASLGRTEVVEFLYRE  156 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~  156 (593)
                      ++.+++.|++.|+.+....-.++.|+..-+  -+.|..++.+||..-
T Consensus       628 nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999887666667788887654  345788888988754

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.40  E-value=6.1e-13  Score=96.12  Aligned_cols=54  Identities=33%  Similarity=0.563  Sum_probs=34.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHH
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM  120 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  120 (593)
                      |.||||+|++.|+.+++++|+++  +.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~--~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEH--GADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHT--TSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56777777777777777777776  6667777777777777777777777777664

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.37  E-value=3.2e-12  Score=118.21  Aligned_cols=124  Identities=19%  Similarity=0.219  Sum_probs=111.1

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhc-hhcCCChHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK-QNKIGCTAVFYAV  108 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~  108 (593)
                      -..||..++.+|+.+.+..||.. -..+|.+ |.+|.|||..|+..|+.++|+.|++.  |+|+|. ++..+.||||+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~-D~sGMs~LahAaykGnl~~v~lll~~--gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQR-DPSGMSVLAHAAYKGNLTLVELLLEL--GADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhcc-CCCcccHHHHHHhcCcHHHHHHHHHh--CCCcCcccccccccHHHHHH
Confidence            34789999999999999999986 4557776 99999999999999999999999999  899885 5677999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      .+|+.++.++|++.|+.. ...|.-|+|+-.+|+.-|+.++|..+-++-.
T Consensus        88 LSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t  136 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNHIT  136 (396)
T ss_pred             HcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcccc
Confidence            999999999999999986 7889999999999999999999998766544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.33  E-value=1.2e-12  Score=95.10  Aligned_cols=55  Identities=27%  Similarity=0.404  Sum_probs=20.4

Q ss_pred             HhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677           50 YDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA  107 (593)
Q Consensus        50 l~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A  107 (593)
                      ++.++.+++.+ |..|+||||+||..|+.++|++|++.  +++++.+|..|+||||+|
T Consensus         2 L~~~~~~~n~~-d~~G~T~LH~A~~~g~~~~v~~Ll~~--g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQ-DKYGNTPLHWAARYGHSEVVRLLLQN--GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT----TTS--HHHHHHHHT-HHHHHHHHHC--T--TT---TTS--HHHH-
T ss_pred             CccCcCCCcCc-CCCCCcHHHHHHHcCcHHHHHHHHHC--cCCCCCCcCCCCCHHHhC
Confidence            33333445544 55566666666666666666666644  555666666666666554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.31  E-value=4.4e-12  Score=91.60  Aligned_cols=54  Identities=33%  Similarity=0.530  Sum_probs=45.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007677          100 GCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLY  154 (593)
Q Consensus       100 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  154 (593)
                      |.||||.||+.|+.+++++|+++|.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999997 777999999999999999999999986

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.31  E-value=1.7e-11  Score=113.55  Aligned_cols=122  Identities=15%  Similarity=0.114  Sum_probs=113.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL  144 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  144 (593)
                      -..||.-+...|..+-...|++.  -.++|..|..|.|||..|+..|+.++|+.|++.|+|++..++..+.||||.|+..
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            36799999999999999999987  5679999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      |+.++.++|++.|+ ....+.-|+|+-..|+.-|+.+.|..+=..
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99999999999999 888999999999999999999998776443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.31  E-value=1.6e-12  Score=94.46  Aligned_cols=56  Identities=21%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             HHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhh
Q 007677          267 LIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA  327 (593)
Q Consensus       267 Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A  327 (593)
                      ||++++..++..|.. |+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~-G~T~LH~A~~~g~~~~v~~Ll~~g~d----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKY-GNTPLHWAARYGHSEVVRLLLQNGAD----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TT-S--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCC-CCcHHHHHHHcCcHHHHHHHHHCcCC----CCCCcCCCCCHHHhC
Confidence            567774444889999 99999999999999999999988888    789999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=9.1e-12  Score=137.50  Aligned_cols=86  Identities=28%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 007677           68 ALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT  147 (593)
Q Consensus        68 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  147 (593)
                      .|+.|+..|+.+.|+.|++.  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~--Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTG--GADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            58889999999999999988  7889999999999999999999999999999999986 78899999999999999999


Q ss_pred             HHHHHHHHh
Q 007677          148 EVVEFLYRE  156 (593)
Q Consensus       148 ~iv~~Ll~~  156 (593)
                      +++++|+++
T Consensus       162 ~iv~~Ll~~  170 (664)
T PTZ00322        162 EVVQLLSRH  170 (664)
T ss_pred             HHHHHHHhC
Confidence            999999988

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.30  E-value=7.4e-12  Score=138.22  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=95.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ..|+.|+..|+.+.++.|++. +.+++.+ |..|.||||+|+..|+.++|++|++.  +++++.+|..|.||||+|+..|
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~-Gadin~~-d~~G~TpLh~Aa~~g~~eiv~~LL~~--Gadvn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTG-GADPNCR-DYDGRTPLHIACANGHVQVVRVLLEF--GADPTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHCC
Confidence            358899999999999999986 8889987 89999999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhc-------CCCCCccCCCCCCCHHHHHH
Q 007677          112 SVELVKATMKG-------NEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus       112 ~~~iv~~Ll~~-------~~~~~~~~~~~g~tpL~~A~  142 (593)
                      +.+++++|+++       |++. ...+..|.+|+..+.
T Consensus       160 ~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        160 FREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS  196 (664)
T ss_pred             cHHHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence            99999999998       6765 567777888776554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=2.3e-11  Score=121.22  Aligned_cols=116  Identities=22%  Similarity=0.224  Sum_probs=95.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 007677           68 ALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT  147 (593)
Q Consensus        68 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  147 (593)
                      .|.-|+..|.+|+|+..+..  -.|+...|..|-|+||-|+..||.+||++|++.|+++ +..|.+||||||+|+..++.
T Consensus       553 LLLDaaLeGEldlVq~~i~e--v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYE--VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHh--hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCch
Confidence            44568889999999999988  5778899999999999999999999999999999998 89999999999999999999


Q ss_pred             HHHHHHHHhcc-ccc-CCcchhHHHHHHH--HcCCHHHHHHHH
Q 007677          148 EVVEFLYRETK-NSL-KDDDCIELLVQLI--ETGLYAVALQLL  186 (593)
Q Consensus       148 ~iv~~Ll~~~~-~~~-~~~~g~t~L~~A~--~~~~~~~v~~Ll  186 (593)
                      .+++.|++.|+ +.. .-.++.|+..-|-  +.|+.++.++|-
T Consensus       630 ~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  630 PMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999999998 322 3355666665442  334445554443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.99  E-value=1.9e-09  Score=108.33  Aligned_cols=121  Identities=21%  Similarity=0.279  Sum_probs=108.1

Q ss_pred             hHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCH
Q 007677           34 LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESV  113 (593)
Q Consensus        34 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~  113 (593)
                      +..|+..+|.-.++..... +.++..+ +.+..|.||+|+..|+-|+|+++++++.++.+++.|..|+|+||-|+..++-
T Consensus       870 il~av~~~D~~klqE~h~~-gg~ll~~-~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r  947 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLN-GGSLLIQ-GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR  947 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhc-CCceEee-CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch
Confidence            6788999998777777776 4455555 8889999999999999999999999986667999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677          114 ELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET  157 (593)
Q Consensus       114 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  157 (593)
                      .+.++|++.|+.+ ...|..|.||-..|-+.|+.+...||-+..
T Consensus       948 ~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  948 AVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            9999999999997 889999999999999999999999986544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.80  E-value=3.3e-09  Score=111.35  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=82.5

Q ss_pred             cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcC-CChHHHHHHHcCCHHHHHH
Q 007677           40 NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI-GCTAVFYAVASESVELVKA  118 (593)
Q Consensus        40 ~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~TpLh~A~~~g~~~iv~~  118 (593)
                      +|..+.++.++++...+.....|..|+|+||+|+..|..++++||+++  |.++..+|+. |.||||.|+.+|+.|++-.
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqh--Gidv~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQH--GIDVFVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhc--CceeeeccccccchHhhHhhhhchHHHHHH
Confidence            344545666666544443323388999999999999999999999999  8999988864 8999999999999999999


Q ss_pred             HHhcCCCCCccCCCCCCCHHHHHHH
Q 007677          119 TMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus       119 Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      |+.+|..+ .++|++|.+||..-++
T Consensus       105 LL~~g~SL-~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  105 LLSKGRSL-RIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             HHhcCCce-EEecccCCCHHHHHhh
Confidence            99999886 8899999999988776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.74  E-value=1e-08  Score=101.53  Aligned_cols=92  Identities=25%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +.++..++..||+.||+..++.++-. +.|++.+ |.+.+|+||+||..|+.+++++|++.. +.+++.+|.-|+|||..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~-g~D~~~~-DyD~RTaLHvAAaEG~v~v~kfl~~~~-kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ-GMDLETK-DYDDRTALHVAAAEGHVEVVKFLLNAC-KVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh-ccccccc-ccccchhheeecccCceeHHHHHHHHH-cCCCChhhccCCCcchH
Confidence            33444455555555555555555443 4555544 555555555555555555555555554 45555555555555555


Q ss_pred             HHHcCCHHHHHHHHh
Q 007677          107 AVASESVELVKATMK  121 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~  121 (593)
                      |-.-+|.+++++|-+
T Consensus       580 A~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhcCcHHHHHHHHH
Confidence            555555555555544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.60  E-value=3.2e-08  Score=104.18  Aligned_cols=86  Identities=19%  Similarity=0.196  Sum_probs=78.6

Q ss_pred             HHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCC
Q 007677          241 IWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKG  320 (593)
Q Consensus       241 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G  320 (593)
                      .+..|.-|+|+||+|+..|..+++++||++|.|+ ..+|...|.||||-|+.+|+.+++-+|+++|..    +..+|++|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S----L~i~Dkeg  119 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDCASLLLSKGRS----LRIKDKEG  119 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHHHHHHHhcCCc----eEEecccC
Confidence            3456789999999999999999999999999999 688877799999999999999999999999987    77899999


Q ss_pred             CchhHhhhhhC
Q 007677          321 NNILHLAGELA  331 (593)
Q Consensus       321 ~T~LH~A~~~~  331 (593)
                      ..||.+.++-.
T Consensus       120 lsplq~~~r~~  130 (1267)
T KOG0783|consen  120 LSPLQFLSRVL  130 (1267)
T ss_pred             CCHHHHHhhcc
Confidence            99999998833

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.58  E-value=1.8e-07  Score=93.25  Aligned_cols=84  Identities=19%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH
Q 007677           69 LHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT  147 (593)
Q Consensus        69 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~  147 (593)
                      ||-.++.|+.|..-.|+..  |+++|..+ ..|.||||.|++.|+..=+++|+-+|+++ ...|.+|+||+.+|-..||.
T Consensus       137 LhasvRt~nlet~LRll~l--GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSL--GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHhhcccHHHHHHHHHc--ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCch
Confidence            5555555555555555555  45544433 23555555555555555555555555553 55555555555555555555


Q ss_pred             HHHHHHHH
Q 007677          148 EVVEFLYR  155 (593)
Q Consensus       148 ~iv~~Ll~  155 (593)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            55554444

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.57  E-value=1.1e-07  Score=95.95  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=59.5

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCC
Q 007677           33 KLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES  112 (593)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~  112 (593)
                      |||.++...+++.....+...-+....+.|..|+||||+|+..||.+.++.|+..  ++++..+|+.|++|||.|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a--~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA--GADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc--CCCccccccccccHHHHHHHcCC
Confidence            4777777777766665444332222223367777777777777777777777777  67777777777777777777777


Q ss_pred             HHHHHHHHhcC
Q 007677          113 VELVKATMKGN  123 (593)
Q Consensus       113 ~~iv~~Ll~~~  123 (593)
                      .+++..++.+-
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            77777666653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.57  E-value=5.7e-08  Score=96.27  Aligned_cols=95  Identities=22%  Similarity=0.210  Sum_probs=83.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      +.++..++.+|++.|+...++.+.-.  +.|++.+|.+.+|+||.||..|+.+++++|++....-+..+|..|+|||.-|
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~--g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQ--GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHh--cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            34556789999999999999888777  7899999999999999999999999999999987666788999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc
Q 007677          142 ASLGRTEVVEFLYRETK  158 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~  158 (593)
                      ..-+|.+++++|-+...
T Consensus       581 ~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             HhcCcHHHHHHHHHHhc
Confidence            99999999999876543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=1.9e-07  Score=94.47  Aligned_cols=91  Identities=21%  Similarity=0.306  Sum_probs=78.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      -|||.++.....+-...++.......++.+|..|+||||+|+..|+.+.++.|+.+|+++ ..+|++|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            359999998877665554433235679999999999999999999999999999999997 8999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 007677          147 TEVVEFLYRETK  158 (593)
Q Consensus       147 ~~iv~~Ll~~~~  158 (593)
                      .+++..++.+..
T Consensus       101 ~q~i~~vlr~~~  112 (560)
T KOG0522|consen  101 EQIITEVLRHLK  112 (560)
T ss_pred             HHHHHHHHHHhH
Confidence            999988887653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.50  E-value=1.6e-06  Score=92.97  Aligned_cols=120  Identities=21%  Similarity=0.252  Sum_probs=98.6

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCcc---ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEG---EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF  105 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh  105 (593)
                      .+.--...|+.+||...|+..+++...   ++|.. |.-|.++||.|..+.|.|++++|+++  +..+       ..+|.
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~-d~lGr~al~iai~nenle~~eLLl~~--~~~~-------gdALL   93 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCR-DPLGRLALHIAIDNENLELQELLLDT--SSEE-------GDALL   93 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhcc-ChHhhhceecccccccHHHHHHHhcC--cccc-------chHHH
Confidence            344456789999999999999997554   45555 89999999999999999999999998  3332       44899


Q ss_pred             HHHHcCCHHHHHHHHhcCCCC---------CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          106 YAVASESVELVKATMKGNEGI---------ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       106 ~A~~~g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      +|++.|..++|+.++.+-...         +...-..+.|||.+||..++.|+++.|+.+++
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            999999999999999874332         12333457799999999999999999999988

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.49  E-value=2.3e-07  Score=93.75  Aligned_cols=96  Identities=23%  Similarity=0.133  Sum_probs=88.4

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      -++.+.++.||+|+..|+-++|+++|+..|..+....+..|+|+||.|+..++-.+.++|++.  |+.+...|..|.||=
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda--gasl~ktd~kg~tp~  971 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA--GASLRKTDSKGKTPQ  971 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc--chhheecccCCCChH
Confidence            457788899999999999999999999988776655589999999999999999999999999  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhc
Q 007677          105 FYAVASESVELVKATMKG  122 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~  122 (593)
                      ..|-+.|+.+++.+|-.+
T Consensus       972 eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  972 ERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHhcCCchHHHHHhhh
Confidence            999999999999998765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.46  E-value=5.2e-07  Score=89.99  Aligned_cols=84  Identities=15%  Similarity=0.116  Sum_probs=42.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      ||-.++.|+.+..-.|+..|++.+...-..|.||||.|++.|+.--+++|+-.|+ +...|.+|.||+.+|-..|+.++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            4555555555555555555555433334445555555555555555555555554 444455555555555555555554


Q ss_pred             HHHHH
Q 007677          183 LQLLH  187 (593)
Q Consensus       183 ~~Ll~  187 (593)
                      +.|++
T Consensus       217 eRl~e  221 (669)
T KOG0818|consen  217 ERLVE  221 (669)
T ss_pred             HHHHH
Confidence            44444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=1.9e-07  Score=57.68  Aligned_cols=28  Identities=21%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 007677           99 IGCTAVFYAVASESVELVKATMKGNEGI  126 (593)
Q Consensus        99 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~  126 (593)
                      +|+||||+||+.|+.|++++|+++|+++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            4777777777777777777777777765

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=1.7e-07  Score=57.84  Aligned_cols=29  Identities=41%  Similarity=0.659  Sum_probs=24.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhh
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLA   94 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~   94 (593)
                      +|+||||+||+.|+.|+|++|+++  ++++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~--gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEH--GADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHc--CCCCC
Confidence            478899999999999999999888  67765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.41  E-value=2.8e-07  Score=58.67  Aligned_cols=30  Identities=43%  Similarity=0.603  Sum_probs=13.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhch
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ   96 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~   96 (593)
                      |.||||+|+..|+.+++++|+++  +++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~--ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKH--GADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHT--TSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHC--cCCCCCC
Confidence            44444444444444444444444  4444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.38  E-value=6e-05  Score=81.21  Aligned_cols=113  Identities=15%  Similarity=0.080  Sum_probs=56.5

Q ss_pred             HHHcCCHHHHHHHHHhcc---hhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcch
Q 007677          173 LIETGLYAVALQLLHDHR---YLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPR  249 (593)
Q Consensus       173 A~~~~~~~~v~~Ll~~~~---~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~  249 (593)
                      |+.+|+...|+.+++...   -+++++|.-|+++|+.|..+.+          .++.+.|++.....            .
T Consensus        32 a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nen----------le~~eLLl~~~~~~------------g   89 (822)
T KOG3609|consen   32 AHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNEN----------LELQELLLDTSSEE------------G   89 (822)
T ss_pred             HHHcCChHHHHHHHHhccccccchhccChHhhhceeccccccc----------HHHHHHHhcCcccc------------c
Confidence            344444444444444322   2334455555555555555544          45555554432111            2


Q ss_pred             hHHHHHHHcCcHHHHHHHHHHCCCc---------cccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          250 ELIHDAADRGNVQFLSILIREYPDL---------MWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       250 tpLh~Aa~~g~~~~v~~Ll~~~~~~---------~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      .+|..|+..|.+++|+.++.+....         ....-.. +-||+.+|+..++.||++.|+++|..
T Consensus        90 dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~-ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen   90 DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTP-DITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCC-CccHHHHHHHhcchHHHHHHHHcCCC
Confidence            3455555666666666665542211         0112233 55777777777777777777776665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.37  E-value=3.9e-07  Score=57.95  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             CchHHHHHHHcCchhHHHHHhcccCcccccccccc
Q 007677          283 NYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTD  317 (593)
Q Consensus       283 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D  317 (593)
                      |+||||+|+++|+.+++++|+++|++    ++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD----INARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC----TTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC----CCCCC
Confidence            67777777777777777777777776    45554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.29  E-value=1.7e-06  Score=88.01  Aligned_cols=90  Identities=21%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhh--chhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 007677           68 ALHVAAEANRIDFVKKLLKRMSAEDLA--KQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG  145 (593)
Q Consensus        68 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~--~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  145 (593)
                      -|.-|+...+...+-.|+.++....++  ..+.+|.|+||+||+.|++.+.++|+-+|.++ ..+|..|.|+|.||-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            456688888888888899886444454  44567899999999999999999999999997 889999999999999999


Q ss_pred             CHHHHHHHHHhcc
Q 007677          146 RTEVVEFLYRETK  158 (593)
Q Consensus       146 ~~~iv~~Ll~~~~  158 (593)
                      .-+++..|+++|.
T Consensus       706 sqec~d~llq~gc  718 (749)
T KOG0705|consen  706 SQECIDVLLQYGC  718 (749)
T ss_pred             cHHHHHHHHHcCC
Confidence            9999999999987

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.19  E-value=3.2e-06  Score=86.08  Aligned_cols=91  Identities=25%  Similarity=0.282  Sum_probs=78.0

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCcc-ccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEG-EIG-VEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~-~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      ..|..|....|+..+..||.+... .++ ..-+.+|.|+||+||+.|+..+.++|+=+  +.|+..+|..|+|||.||-+
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWy--g~dv~~rda~g~t~l~yar~  703 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWY--GVDVMARDAHGRTALFYARQ  703 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHh--CccceecccCCchhhhhHhh
Confidence            457889998999999988876321 122 22366789999999999999999999988  89999999999999999999


Q ss_pred             cCCHHHHHHHHhcCC
Q 007677          110 SESVELVKATMKGNE  124 (593)
Q Consensus       110 ~g~~~iv~~Ll~~~~  124 (593)
                      .|.-|++..|+++|.
T Consensus       704 a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  704 AGSQECIDVLLQYGC  718 (749)
T ss_pred             cccHHHHHHHHHcCC
Confidence            999999999999984

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.09  E-value=4.4e-06  Score=91.54  Aligned_cols=129  Identities=12%  Similarity=0.056  Sum_probs=91.3

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      .....|++.+|.++..|....++.+++..+..... .|.+|.-.+|+ |..++.+..-+|+.-. +..++.+|..|+|||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~-~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISAD-GVAIDIRDRNGWTPL  645 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeec-ccccccccCCCCccc
Confidence            45677888888888888888888888752222222 25666667777 5556666666666553 677888888888888


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCC-----ccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 007677          105 FYAVASESVELVKATMKGNEGIA-----TLPDNDGMLPIVRAASLGRTEVVEFLYRE  156 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  156 (593)
                      |+|+..|+..++..|++.|++..     ......|.|+-..|..+|+..+.-+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            88888888888888887665432     23344577888888888888877777665

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.90  E-value=2.3e-05  Score=69.12  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677           90 AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus        90 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      +.++|.+|..|+|||++|+..|+.+.+.+|+.+|...+...|..|.+++.+|-+.|+.++++.|.+...
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            457888999999999999999999999999999944458889999999999999999999888887654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.88  E-value=2.2e-05  Score=76.22  Aligned_cols=84  Identities=15%  Similarity=0.155  Sum_probs=62.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      --|..||+.|+.|.|+.|++.  |.++|..|....+||.+|+..||.++|++|+++|+-- .....+|.-. |+++.+. 
T Consensus        38 ~elceacR~GD~d~v~~LVet--gvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC-~YgaLnd-  112 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVET--GVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRC-HYGALND-  112 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHh--CCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchh-hhhhhhH-
Confidence            357889999999999999987  8889999999999999999999999999999998763 4444556555 4444443 


Q ss_pred             HHHHHHHHHh
Q 007677          147 TEVVEFLYRE  156 (593)
Q Consensus       147 ~~iv~~Ll~~  156 (593)
                       .+-+.|++.
T Consensus       113 -~IR~mllsy  121 (516)
T KOG0511|consen  113 -RIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHH
Confidence             233444443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.88  E-value=1.6e-05  Score=88.00  Aligned_cols=86  Identities=26%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      .|.|+||.|+..|..-++++|++.  ++++|..|..|+||||.+...|+...+..|+++|++. ...+.+|.+|+++|..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~--ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQN--GADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAME  731 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhc--CCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhh
Confidence            456677777777777777777766  5667777777777777777777777777777666663 6666667777776665


Q ss_pred             cCCHHHHHH
Q 007677          144 LGRTEVVEF  152 (593)
Q Consensus       144 ~g~~~iv~~  152 (593)
                      ..+.+++-+
T Consensus       732 ~~~~d~~~l  740 (785)
T KOG0521|consen  732 AANADIVLL  740 (785)
T ss_pred             hccccHHHH
Confidence            554444433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.80  E-value=3.6e-05  Score=84.64  Aligned_cols=125  Identities=17%  Similarity=0.116  Sum_probs=98.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      .-.|.|.||+++..+..-+++.+++-. +......|.+|.-.+|+ |..++.+.+-+|+.....-.+.+|..|+||||+|
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~-~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWA-GSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhccc-ccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            567899999999999999999999852 34455667777788888 5566777777666554444489999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-c------ccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          142 ASLGRTEVVEFLYRETK-N------SLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      +..|+..++..|++.++ .      ....+.|.|+-..|-.+|+..+.-+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999998877 1      22456688888888888888777666554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.73  E-value=6.4e-05  Score=73.11  Aligned_cols=85  Identities=15%  Similarity=0.114  Sum_probs=64.1

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHc
Q 007677           31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS  110 (593)
Q Consensus        31 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~  110 (593)
                      .--|+.|++.||.+.|++|++ .|.++|.. |....+||.+|+..||.++|++|+++  |+--..-..+|..+++-|.  
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~v-D~fD~spL~lAsLcGHe~vvklLLen--GAiC~rdtf~G~RC~YgaL--  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAV-DRFDSSPLYLASLCGHEDVVKLLLEN--GAICSRDTFDGDRCHYGAL--  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchh-hcccccHHHHHHHcCcHHHHHHHHHc--CCcccccccCcchhhhhhh--
Confidence            345788999999999999998 48888887 88889999999999999999999998  6655555566777644333  


Q ss_pred             CCHHHHHHHHhc
Q 007677          111 ESVELVKATMKG  122 (593)
Q Consensus       111 g~~~iv~~Ll~~  122 (593)
                       +..+=+.|+++
T Consensus       111 -nd~IR~mllsy  121 (516)
T KOG0511|consen  111 -NDRIRRMLLSY  121 (516)
T ss_pred             -hHHHHHHHHHH
Confidence             23444556554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.70  E-value=7e-05  Score=66.13  Aligned_cols=69  Identities=23%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc-hhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 007677           54 EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA-EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEG  125 (593)
Q Consensus        54 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~  125 (593)
                      +.++|.+ |..|+|||++|+..|+.+.|.+|+.+  + +.+...|..|.+++.+|-+.|+.++++.|-+...+
T Consensus         2 e~~in~r-D~fgWTalmcaa~eg~~eavsyllgr--g~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINAR-DAFGWTALMCAAMEGSNEAVSYLLGR--GVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccch-hhhcchHHHHHhhhcchhHHHHHhcc--CcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3567877 99999999999999999999999999  6 78999999999999999999999999999887544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.64  E-value=3.3e-05  Score=85.49  Aligned_cols=85  Identities=20%  Similarity=0.172  Sum_probs=77.8

Q ss_pred             hcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhH
Q 007677          246 EQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILH  325 (593)
Q Consensus       246 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH  325 (593)
                      ..|.|+||.|+..|..-+++.|++.++++ +..|.. |+||+|.+...|+...+..++++|++    -++.|.+|.+||+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~-g~~plh~~~~~g~~~~~~~ll~~~a~----~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSK-GRTPLHHATASGHTSIACLLLKRGAD----PNAFDPDGKLPLD  727 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-hhhhcc-CCCcchhhhhhcccchhhhhcccccc----ccccCccCcchhh
Confidence            45699999999999999999999999997 999999 99999999999999999999999998    5689999999999


Q ss_pred             hhhhhCCCccc
Q 007677          326 LAGELAPQHRL  336 (593)
Q Consensus       326 ~A~~~~~~~~~  336 (593)
                      +|....+.+++
T Consensus       728 ~a~~~~~~d~~  738 (785)
T KOG0521|consen  728 IAMEAANADIV  738 (785)
T ss_pred             HHhhhccccHH
Confidence            99887554443

>smart00248 ANK ankyrin repeats

Probab=96.20  E-value=0.007  Score=35.91  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=15.8

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhcCCC
Q 007677          100 GCTAVFYAVASESVELVKATMKGNEG  125 (593)
Q Consensus       100 g~TpLh~A~~~g~~~iv~~Ll~~~~~  125 (593)
                      |.||+|+|+..|+.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45666666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=95.82  E-value=0.012  Score=34.79  Aligned_cols=23  Identities=48%  Similarity=0.783  Sum_probs=17.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKR   87 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~   87 (593)
                      |.||+|+|+..|+.++++.|++.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~   24 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDK   24 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc
Confidence            56777777777777777777776

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.36  E-value=0.017  Score=58.83  Aligned_cols=64  Identities=19%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             HHHHHHHHHcCCchh----hhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677           78 IDFVKKLLKRMSAED----LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus        78 ~~~v~~Ll~~~~~~~----~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  142 (593)
                      .+.+++|.++....+    ....+...-|+||+|+..|.-++|.++|+.|.| +..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            566777776621111    223344467888888888888888888888866 4788888888887766

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.96  E-value=0.54  Score=42.11  Aligned_cols=47  Identities=15%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             hHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          250 ELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       250 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      .-|..|+..|-...+...+++|.++        ..++|-.|+++++.+|+.+++.
T Consensus       145 ~hl~~a~~kgll~F~letlkygg~~--------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  145 QHLEKAAAKGLLPFVLETLKYGGNV--------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCcc--------cHHHHHHHHHhhHHHHHHHhhc
Confidence            4578899999999999999999887        5589999999999999999875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.86  E-value=0.045  Score=55.86  Aligned_cols=41  Identities=27%  Similarity=0.249  Sum_probs=21.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           66 KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        66 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      .|+||+|+..|.-++|.+||+.  ++|...+|..|.||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Lee--g~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEE--GCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHh--cCCchhcccCCCCcccccc
Confidence            3555555555555555555555  4555555555555555444

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.26  E-value=0.19  Score=46.21  Aligned_cols=47  Identities=11%  Similarity=0.111  Sum_probs=25.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET  157 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  157 (593)
                      .|..|+...+.+-+.-++....+.        .+++-+|+.++..+++.+|+++-
T Consensus       156 sledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f  202 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKF  202 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhc
Confidence            355566666666555555433221        34566666666666666666544

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=93.82  E-value=5.7  Score=40.07  Aligned_cols=187  Identities=13%  Similarity=0.084  Sum_probs=105.3

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCc-cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhh-hchhcCCCh
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYE-GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL-AKQNKIGCT  102 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~T  102 (593)
                      ..|..|.-.|..+...++.+....++++-. .....-.|..|+-.+......+..+-...+++...+.-+ =..|..|.-
T Consensus        16 ~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~   95 (322)
T cd07920          16 AKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCR   95 (322)
T ss_pred             cCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHH
Confidence            457778888889999998888888877622 112222477888888888888877766666655311111 145667777


Q ss_pred             HHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHHHc
Q 007677          103 AVFYAVASESVELVKATMKG--NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLIET  176 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~--~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~~~  176 (593)
                      .+..+...+..+-...+++.  +.-..-..|..|...+..+...++.+..+.+++.-.    .-..+..|...+..+...
T Consensus        96 vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~G~~vvq~~l~~  175 (322)
T cd07920          96 VIQKLLESISEEQISLLVKELRGHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDAFKGNCVALSTHPYGCRVIQRCLEH  175 (322)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHh
Confidence            77777777665444444332  111113456677777777777666665555554332    222455666666655555


Q ss_pred             CCHHHHHHHHHhc--chhhhccccCCccHHHHHHhcC
Q 007677          177 GLYAVALQLLHDH--RYLATKRAKNKETALHVLARKN  211 (593)
Q Consensus       177 ~~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~a~~~~  211 (593)
                      ...+..+.+++.-  ....-..|..|...+..+...+
T Consensus       176 ~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~  212 (322)
T cd07920         176 CSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELG  212 (322)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcC
Confidence            4433333332220  0111124555555555554443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.73  E-value=1.2  Score=39.98  Aligned_cols=73  Identities=12%  Similarity=0.004  Sum_probs=50.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 007677           66 KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG  145 (593)
Q Consensus        66 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  145 (593)
                      .-.|..|+..+...+++..-+.     +...-...++-+..||+..+.|+|+++-+   ++   .-.+-.+-+..|....
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~-----L~~~~~~~q~LFElAC~~qkydiV~WI~q---nL---~i~~~~~iFdIA~~~k  115 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKED-----LENERYLNQELFELACEEQKYDIVKWIGQ---NL---HIYNPEDIFDIAFAKK  115 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHH-----hhcchhHHHHHHHHHHHHccccHHHHHhh---cc---CCCCchhhhhhhhhcc
Confidence            4567788888988888877554     22112346778889999999999999932   22   2223455678888888


Q ss_pred             CHHH
Q 007677          146 RTEV  149 (593)
Q Consensus       146 ~~~i  149 (593)
                      +.++
T Consensus       116 DlsL  119 (192)
T PF03158_consen  116 DLSL  119 (192)
T ss_pred             chhH
Confidence            8776

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.71  E-value=0.57  Score=43.23  Aligned_cols=114  Identities=15%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             HhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcC----CChHHHHHH
Q 007677           33 KLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI----GCTAVFYAV  108 (593)
Q Consensus        33 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~----g~TpLh~A~  108 (593)
                      .|-.|+..-+.+.+..++...         ..-.+++-+|...+..+++.+|++.-   ....+|..    +.--+.++.
T Consensus       156 sledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f---~ft~~dv~~~~~~~ydieY~L  223 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF---NFTKQDVASMEKELYDIEYLL  223 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc---ceecchhhhcCcchhhHHHHH
Confidence            355677777777666665531         12346777788778888888888763   12222211    222333333


Q ss_pred             H--cCCHHHHHHHHhcCCCCC---ccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          109 A--SESVELVKATMKGNEGIA---TLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       109 ~--~g~~~iv~~Ll~~~~~~~---~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      .  +.+..+++..+++|---+   -.+-+.|.|-|.-|...++.+|+.+|+++|+
T Consensus       224 S~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  224 SEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             hhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            2  335667777777763221   2345567777777777777777777777775

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.16  E-value=0.49  Score=36.36  Aligned_cols=47  Identities=17%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhc
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG  122 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~  122 (593)
                      ..+..|+.+|+.|+++.+++..   .+      ....+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~---~~------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN---KP------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh---cc------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            3567777777777777766541   11      13456777777777777777665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>cd07920 Pumilio Pumilio-family RNA binding domain

Probab=89.21  E-value=24  Score=35.52  Aligned_cols=184  Identities=9%  Similarity=0.011  Sum_probs=112.7

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCc-cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc-hhhhchhcCCCh
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYE-GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA-EDLAKQNKIGCT  102 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~d~~g~T  102 (593)
                      ..|..|+-.+......+..+....+++.-. .......+..|.-.+..+...+..+-...+++...+ ..-=..|..|+.
T Consensus        52 ~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~  131 (322)
T cd07920          52 MVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCRVIQKLLESISEEQISLLVKELRGHVVELVKDQNGNH  131 (322)
T ss_pred             hcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcCHHHHHHHHHHHHHCHHHHhhcccccH
Confidence            457788888888888888887776666532 222223477888888888888876665555554211 122246788999


Q ss_pred             HHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHHhcccccCCcchhHHHHHHH
Q 007677          103 AVFYAVASESVELVKATMKG----NEGIATLPDNDGMLPIVRAASLGRTEVV----EFLYRETKNSLKDDDCIELLVQLI  174 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~g~~~iv----~~Ll~~~~~~~~~~~g~t~L~~A~  174 (593)
                      .+..+...++.+..+.+++.    -.+  -..+..|...+.-.......+..    +.+..+...-..|..|...+..+.
T Consensus       132 Vvq~~l~~~~~~~~~~i~~~l~~~~~~--l~~~~~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l  209 (322)
T cd07920         132 VIQKCIEKFPPEDLQFIIDAFKGNCVA--LSTHPYGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVL  209 (322)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHH--HHcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence            99888888777665555542    222  24567787777777776655443    333333223446888988888888


Q ss_pred             HcCCHHHHHHHHHhcc-hh-hhccccCCccHHHHHHhc
Q 007677          175 ETGLYAVALQLLHDHR-YL-ATKRAKNKETALHVLARK  210 (593)
Q Consensus       175 ~~~~~~~v~~Ll~~~~-~~-~~~~d~~g~t~Lh~a~~~  210 (593)
                      ..+..+..+.+++.-. .. .-..++.|...+..+...
T Consensus       210 ~~~~~~~~~~i~~~l~~~~~~l~~~k~Gs~Vve~~l~~  247 (322)
T cd07920         210 ELGDPDDTSRIIEKLLGNIVQLSCHKFASNVVEKCLKH  247 (322)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            8877655555544311 11 113455555554444443

Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon

>PLN03218 maturation of RBCL 1; Provisional

Probab=85.45  E-value=8.5  Score=45.49  Aligned_cols=256  Identities=13%  Similarity=0.016  Sum_probs=120.3

Q ss_pred             ccccc-hHhHHHHHcCCHHHHHHHHhh---CccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC----chhhhchhc
Q 007677           27 TITRR-LKLYRAALNGDWAVAKDIYDK---YEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS----AEDLAKQNK   98 (593)
Q Consensus        27 ~~~~~-t~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~----~~~~~~~d~   98 (593)
                      |..-+ +.+...++.|+.+.+..++++   .+..++.   ...++.+...++.|+.+-+..+++.+.    +...+  ..
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~---vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD--~v  580 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR---VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD--HI  580 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc--HH
Confidence            44433 344455778888776666543   1222221   123556677777788777766665531    11111  11


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCC-HHHHHHHcCCHHHHHHHHHhcc-c-ccCC-cchhHHHHHHH
Q 007677           99 IGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGML-PIVRAASLGRTEVVEFLYRETK-N-SLKD-DDCIELLVQLI  174 (593)
Q Consensus        99 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~g~~~iv~~Ll~~~~-~-~~~~-~~g~t~L~~A~  174 (593)
                      ...+-+...++.|+.+-+..+.+.-.......+..-++ .+..-++.|+.+-+..+++.-. . ...| ..-.+.+..++
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~  660 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG  660 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            23455566677777765555544321110111222222 3334455677655544443322 1 1122 12344556667


Q ss_pred             HcCCHHHHHHHHHhcchhhhccccCCc-cHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHH
Q 007677          175 ETGLYAVALQLLHDHRYLATKRAKNKE-TALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIH  253 (593)
Q Consensus       175 ~~~~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh  253 (593)
                      ..|..+.+..+++.....-...|..-. +-++..++.|.      ...+.++.+.+.+.+..++....       .+.+.
T Consensus       661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~------~eeA~~lf~eM~~~g~~Pdvvty-------N~LI~  727 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN------WKKALELYEDIKSIKLRPTVSTM-------NALIT  727 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCCCCHHHH-------HHHHH
Confidence            777777766666552211111122222 22333344443      23445555555555555554432       34445


Q ss_pred             HHHHcCcHH----HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          254 DAADRGNVQ----FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       254 ~Aa~~g~~~----~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      ..++.|..+    +++.+.+.+..+ +.....   +.++..++.|..+....+++
T Consensus       728 gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~---sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        728 ALCEGNQLPKALEVLSEMKRLGLCP-NTITYS---ILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHH---HHHHHHHHCCCHHHHHHHHH
Confidence            556666664    333344445433 233333   45555566666555444443

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.89  E-value=2.1  Score=32.78  Aligned_cols=48  Identities=15%  Similarity=0.210  Sum_probs=40.0

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRM   88 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~   88 (593)
                      ..+..|+..|+.|+++.+++...  +    +   ...+..|+...+.|++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--~----~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--P----D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--c----H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            45899999999999999987531  1    1   45899999999999999999873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PLN03218 maturation of RBCL 1; Provisional

Probab=81.23  E-value=17  Score=43.00  Aligned_cols=251  Identities=11%  Similarity=0.057  Sum_probs=138.2

Q ss_pred             ccccc-hHhHHHHHcCCHHHHHHHHhhC---ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--chhhhchhcCC
Q 007677           27 TITRR-LKLYRAALNGDWAVAKDIYDKY---EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS--AEDLAKQNKIG  100 (593)
Q Consensus        27 ~~~~~-t~Lh~Aa~~g~~~~v~~Ll~~~---~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~~~d~~g  100 (593)
                      |..-+ +.+...++.|+.+.+..++++-   +..++.   ...++.+...++.|+.+-+..+.+.+.  +..++.  ..-
T Consensus       471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv---vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~--vTY  545 (1060)
T PLN03218        471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV---HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR--VVF  545 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH--HHH
Confidence            44434 4455668899998887777652   222221   123567777888999877666655431  222221  123


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcC----CCCCccCCCCCC-CHHHHHHHcCCHHHHHHHHHhcc-ccc-CC-cchhHHHHH
Q 007677          101 CTAVFYAVASESVELVKATMKGN----EGIATLPDNDGM-LPIVRAASLGRTEVVEFLYRETK-NSL-KD-DDCIELLVQ  172 (593)
Q Consensus       101 ~TpLh~A~~~g~~~iv~~Ll~~~----~~~~~~~~~~g~-tpL~~A~~~g~~~iv~~Ll~~~~-~~~-~~-~~g~t~L~~  172 (593)
                      ++.+...++.|+.+-+..+++.-    ..+  .+|..-. +-+...++.|+.+-+..+++.-. .+. .+ ....+.+..
T Consensus       546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi--~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~a  623 (1060)
T PLN03218        546 NALISACGQSGAVDRAFDVLAEMKAETHPI--DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS  623 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence            45666777888887766655421    111  1232222 34455667888876666665433 111 22 234566777


Q ss_pred             HHHcCCHHHHHHHHHhcchhhhccccCCccH-HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhH
Q 007677          173 LIETGLYAVALQLLHDHRYLATKRAKNKETA-LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPREL  251 (593)
Q Consensus       173 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tp  251 (593)
                      .++.|..+.+..+++.....-...|..-.+. +...++.+.      ...+.++.+.+.+.|..++....       .+.
T Consensus       624 y~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~------~eeA~~l~~eM~k~G~~pd~~ty-------nsL  690 (1060)
T PLN03218        624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD------LDKAFEILQDARKQGIKLGTVSY-------SSL  690 (1060)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCCCCHHHH-------HHH
Confidence            8889999888888776322111222222233 333444444      34566777777777777776543       667


Q ss_pred             HHHHHHcCcHHHHHHHHHHCCCccccccCCCCc-hHHHHHHHcCchhH
Q 007677          252 IHDAADRGNVQFLSILIREYPDLMWKADKKDNY-TIFHIAVKNRLEDL  298 (593)
Q Consensus       252 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~-t~Lh~Av~~~~~~i  298 (593)
                      +...++.|..+-...+++.-...-...|.. -. +.+..-++.|+.+-
T Consensus       691 I~ay~k~G~~eeA~~lf~eM~~~g~~Pdvv-tyN~LI~gy~k~G~~ee  737 (1060)
T PLN03218        691 MGACSNAKNWKKALELYEDIKSIKLRPTVS-TMNALITALCEGNQLPK  737 (1060)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHCCCHHH
Confidence            777888898876655554321110112222 23 34445556666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	593
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		8e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		9e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-04

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
           N G T LH+AA    ++ V+ LLK  +  D+   +  G T +  A A+  +E+V+  +K 
Sbjct: 45  NDGYTPLHLAASNGHLEIVEVLLK--NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
              +    DNDG  P+  AA  G  E+VE L +
Sbjct: 103 GADVNAY-DNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
           N G T LH+AA +  ++ V+ LLK     D+   +  G T +  A     +E+V+  +K 
Sbjct: 45  NTGTTPLHLAAYSGHLEIVEVLLKH--GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
              +  + D+DGM P+  AA  G  E+VE L +
Sbjct: 103 GADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK 134

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 33  KLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAED 92
           +L  AA NG+    KD+ +   G       + G+T LH AAE    + VK LL + +  D
Sbjct: 7   RLIEAAENGNKDRVKDLLEN--GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA--D 62
Query: 93  LAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTEVVE 151
              ++  G T + YA  +   E+VK  + KG +  A   D+DG  P+  AA  G  E+V+
Sbjct: 63  PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK--DSDGRTPLHYAAENGHKEIVK 120
Query: 152 FL 153
            L
Sbjct: 121 LL 122

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
           G T  H+A     ++ VK L  R    DL K    G T +  AV  +  E+ +  ++ N 
Sbjct: 72  GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NG 130
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDD 165
               + D    +P+ RAAS+G  +++E L    K+++   D
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 55  GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVE 114
           G I  + +  G+TAL +A    R+D VK LL      D+  Q+  G TA+  A      E
Sbjct: 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLA--CEADVNVQDDDGSTALMCACEHGHKE 230
Query: 115 LVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLY 154
           +    +       +L D DG   ++ A   G++E+   LY
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY 270

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 33  KLYRAALNGDWAVAKDIYDKYEGEIGVEIT---NHGKTALHVAAEANRIDFVKKLLKRMS 89
           +L  AA NG+    KD+      E G ++    + G+T LH AAE    + VK L+ + +
Sbjct: 7   RLIEAAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTE 148
             D+  ++  G T + +A  +   E+VK  + KG +      D+DG  P+  AA  G  E
Sbjct: 62  --DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSDGRTPLHHAAENGHKE 117
Query: 149 VVEFL 153
           VV+ L
Sbjct: 118 VVKLL 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	593
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-04
2rfa_A	232	Transient receptor potential cation channel subfa	1e-11
2rfa_A	232	Transient receptor potential cation channel subfa	4e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-11
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-11
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-08
2etb_A	256	Transient receptor potential cation channel subfam	3e-10
2etb_A	256	Transient receptor potential cation channel subfam	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	9e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-09
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-09
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-08
2pnn_A	273	Transient receptor potential cation channel subfa	3e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 7e-14
 Identities = 62/357 (17%), Positives = 106/357 (29%), Gaps = 110/357 (30%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ AA  G       + +K            T  G T LHVAA+  ++   + LL+R  A
Sbjct: 117 LHIAAREGHVETVLALLEK-----EASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DA 170

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK----------------------ATMKGNEGIAT 128
                  K G T +  AV   ++++VK                      A  +    +A 
Sbjct: 171 -HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229

Query: 129 L----------PDNDGMLPIVRAASLGRTEVVEFLYRETKN-SLKDDDCIELLVQLIETG 177
                          G+ P+  AA  G  E+V  L  +  N +L +            T 
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG--------LTP 281

Query: 178 LYAVALQLLHDH----RYLATKRA------KNKETALHVLARKN--------LG---DKD 216
           L+ VA      H      L           +   T LHV +           L    D +
Sbjct: 282 LHLVA---QEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 217 RKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMW 276
            K K   +                       P   +H AA +G+   +++L++       
Sbjct: 339 AKTKLGYS-----------------------P---LHQAAQQGHTDIVTLLLKNGASP-- 370

Query: 277 KADKKDNY--TIFHIAVKNRLEDLFKF-IYDIKPIADLMVDCTDEKGNNILHLAGEL 330
             ++  +   T   IA +     +           +   V  +D+   +      E+
Sbjct: 371 --NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF--VLVSDKHRMSFPETVDEI 423

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.0 bits (175), Expect = 3e-13
 Identities = 71/364 (19%), Positives = 118/364 (32%), Gaps = 89/364 (24%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ AA  G   VAK +          ++       +T LH AA     + VK LL+  + 
Sbjct: 51  LHMAARAGHTEVAKYLLQN-----KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA- 104

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
            +       G T +  A     VE V A   K               G  P+  AA  G+
Sbjct: 105 -NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM-----TKKGFTPLHVAAKYGK 158

Query: 147 TEVVEFL--YRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETAL 204
             V E L       N+    + +  L   +      +   LL          A N  T L
Sbjct: 159 VRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNLDIVKLLL-PRGGSPHSPAWNGYTPL 216

Query: 205 HVLARKN-------L----GDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIH 253
           H+ A++N       L    G  + ++ +  T                       P   +H
Sbjct: 217 HIAAKQNQVEVARSLLQYGGSANAESVQGVT-----------------------P---LH 250

Query: 254 DAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRLEDLFKFIYDIKPIADL 311
            AA  G+ + +++L+ +  +     +  +    T  H+  +     +   +         
Sbjct: 251 LAAQEGHAEMVALLLSKQANG----NLGNKSGLTPLHLVAQEGHVPVADVLIKHG--VM- 303

Query: 312 MVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNK 371
            VD T   G   LH+A   +    + +V        + LL  +A  DV      +AK   
Sbjct: 304 -VDATTRMGYTPLHVA---SHYGNIKLV--------KFLLQHQA--DV------NAKTKL 343

Query: 372 GLTP 375
           G +P
Sbjct: 344 GYSP 347

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.4 bits (163), Expect = 9e-12
 Identities = 65/378 (17%), Positives = 103/378 (27%), Gaps = 127/378 (33%)

Query: 58  GVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVE 114
           G+        G T LHVA+    +  VK LL+R +       N    T +  A  +   E
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTE 61

Query: 115 LVK----------------------ATMKGNEGIATL----------PDNDGMLPIVRAA 142
           + K                      A   G+  +  L              G  P+  AA
Sbjct: 62  VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121

Query: 143 SLGRTEVVEFLYRE--TKNSLKDDDCIELLVQLIETGLYAVALQLLHDH----RYLATKR 196
             G  E V  L  +  ++  +              T L+  A    +        L  + 
Sbjct: 122 REGHVETVLALLEKEASQACMTKKGF---------TPLHVAA---KYGKVRVAELLLERD 169

Query: 197 A------KNKETALHVLARKN----------LG-DKDRKNKEAETLVESLWEEVILLSKQ 239
           A      KN  T LHV    N           G           T               
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT--------------- 214

Query: 240 EIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRLED 297
                   P   +H AA +  V+    L++         + +     T  H+A +    +
Sbjct: 215 --------P---LHIAAKQNQVEVARSLLQYGGSA----NAESVQGVTPLHLAAQEGHAE 259

Query: 298 LFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVK 357
           +   +  +   A+   +  ++ G   LHL    A +  + V           L+      
Sbjct: 260 MVALL--LSKQAN--GNLGNKSGLTPLHLV---AQEGHVPVA--------DVLIKHGV-- 302

Query: 358 DVVPPKLRDAKNNKGLTP 375
            V      DA    G TP
Sbjct: 303 MV------DATTRMGYTP 314

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 39/158 (24%), Positives = 60/158 (37%), Gaps = 26/158 (16%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+  A  G   VA  +        GV +   T  G T LHVA+    I  VK LL+   A
Sbjct: 282 LHLVAQEGHVPVADVLIKH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QA 335

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
            D+  + K+G + +  A      ++V      G   NE       +DG  P+  A  LG 
Sbjct: 336 -DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE-----VSSDGTTPLAIAKRLGY 389

Query: 147 TEVVEFLYRETKN----SLKDDD---CIELLVQLIETG 177
             V + L   T       + D       E + ++++  
Sbjct: 390 ISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILDVS 427

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.1 bits (165), Expect = 8e-13
 Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 44/201 (21%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ +       +         ++       +     + G T  H+A     ++ VK L  
Sbjct: 40  LHWSVSFQAHEITSFLLSKMENV------NLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
           R    DL K    G T +  AV  +  E+ +     G           D    +P+ RAA
Sbjct: 94  RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-----DKFNQIPLHRAA 148

Query: 143 SLGRTEVVEFLYRETKNSL--KDDDCIELLVQLIETGLYA--------VALQLLHDHRYL 192
           S+G  +++E L    K+++  +D            T L+          A+ L+  +   
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQG--------WTPLFHALAEGHGDAAVLLVEKYG-- 198

Query: 193 ATKRAKNK--ETALHVLARKN 211
           A     +     A  V   + 
Sbjct: 199 AEYDLVDNKGAKAEDVALNEQ 219

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 46/259 (17%), Positives = 83/259 (32%), Gaps = 72/259 (27%)

Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG- 122
               LH A   N    V++LL    +  L ++++ G   + ++V+ ++ E+      K  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNS---LKDDDCIELLVQLIETGLY 179
           N  +   PD+ G  P   A S+G  EVV+ LY            +           T L+
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG--------VTCLH 112

Query: 180 AVALQLLHDH----RYL----ATKRAKNK--ETALHVLARKNLGDKDRKNKEAETLVESL 229
                         ++L    A+ R K+K  +  LH  A          + +   L+E  
Sbjct: 113 LAV---GKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG-------SLK---LIE-- 157

Query: 230 WEEVILLSKQEIWELIEQPRELI-----------HDAADRGNVQFLSILIREYPDLMWKA 278
                         L    +  +             A   G+     +L+ +Y      A
Sbjct: 158 -------------LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-----GA 199

Query: 279 D--KKDNY--TIFHIAVKN 293
           +    DN       +A+  
Sbjct: 200 EYDLVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 22/128 (17%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ A     + V++ + +      G  +       +  LH AA    +  ++ L     +
Sbjct: 111 LHLAVGKKWFEVSQFLIEN-----GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS 165

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA--TMKG---NEGIATLPDNDGMLPIVRAASLG 145
             +  Q+K G T +F+A+A    +         G   +       DN G      A +  
Sbjct: 166 -AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV-----DNKGAKAEDVALNE- 218

Query: 146 RTEVVEFL 153
             +V +F 
Sbjct: 219 --QVKKFF 224

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 2e-12
 Identities = 48/284 (16%), Positives = 83/284 (29%), Gaps = 67/284 (23%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TM 120
            +     +HVAA   + D V++L++         QN+ GCTA+  A     V+  K    
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGV--SPTIQNRFGCTALHLACKFGCVDTAKYLAS 74

Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYA 180
            G           G  PI  A    +T++V  L          +        L E     
Sbjct: 75  VG----EVHSLWHGQKPIHLAVMANKTDLVVALV-----EGAKERGQMPESLLNECDERE 125

Query: 181 VALQLLHDHRYLATKRAKNKETALHVLARKNLG-------------DKDRKNKEAETLVE 227
           V           +  +    +TALH                         K+K  ET   
Sbjct: 126 VN-------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADET--- 175

Query: 228 SLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD--KKDNY- 284
                               P   +  A +  N + L +++ +             +   
Sbjct: 176 --------------------P---LMRAMEFRNREALDLMM-DTVPSKSSLRLDYANKQG 211

Query: 285 -TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
            +  H A+    ED+     ++    D  V+  D +    L+L+
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMG--ID--VNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L RA    +      + D    +  + +      G + LH A   N  D   + ++    
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GI 235

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK-----------ATMKGNEGIATLP-DNDGMLPI 138
            D+  ++      ++ +V +  V L K                + G   LP     +  +
Sbjct: 236 -DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFV 294

Query: 139 VRAASLGRTEVVEFL 153
             AA   + EV++ L
Sbjct: 295 PAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 42/351 (11%), Positives = 91/351 (25%), Gaps = 101/351 (28%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           ++ AA  G     +           +            G TALH+A +   +D  K L  
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQ---------NRFGCTALHLACKFGCVDTAKYLAS 74

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVK----------------ATMKGNEGIATL- 129
                  +  +  G   +  AV +   +LV                         +  + 
Sbjct: 75  V-GE-VHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIG 130

Query: 130 ---PDNDGMLPIVRAASLG--RTEVVEFLYRE--TKNSLKDDDCIELLVQLIETGLYAVA 182
                  G   +     LG    E+++ L +   +  + KD      L++ +E       
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNREAL 189

Query: 183 LQLLHDHRYL--ATKRAKNKE--TALHVLARKN----------LG-DKDRKNKEAETLVE 227
             ++              NK+  + LH     N          +G D + ++ E      
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV--- 246

Query: 228 SLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDN---- 283
                               P   ++ +     V     L+++    + +A    N    
Sbjct: 247 --------------------P---LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 284 -------YTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
                        A     +++ + +   + + +  V  +   G       
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLL--QEKLDE--VVRSLNTGAGGAVKR 330

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 53/358 (14%), Positives = 98/358 (27%), Gaps = 104/358 (29%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI-TNHGKTALHVAAEANRIDFVKKLLKRMSAED 92
           L+ A   G    AK +        G      HG+  +H+A  AN+ D V  L++      
Sbjct: 57  LHLACKFGCVDTAKYLASV-----GEVHSLWHGQKPIHLAVMANKTDLVVALVE------ 105

Query: 93  LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG--RTEVV 150
                + G          +  E+ +         + +    G   +     LG    E++
Sbjct: 106 --GAKERGQMPESLLNECDEREVNEI-------GSHVKHCKGQTALHWCVGLGPEYLEMI 156

Query: 151 EFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLA 208
           + L                    ++ G               A+  AK+K  ET L    
Sbjct: 157 KIL--------------------VQLG---------------ASPTAKDKADETPLMRAM 181

Query: 209 RKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILI 268
                     N+EA   ++ + + V   S   +    +Q    +H A            +
Sbjct: 182 EFR-------NREA---LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231

Query: 269 REYPDLMWKADKKDNY--TIFHIAVKNRLEDLFKF---------IYDIKPIADLMVDCTD 317
               D+    + +DN      +++V+  +  L K          I          V    
Sbjct: 232 EMGIDV----NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 318 EKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTP 375
               + +  A   A   +  V+        + L       +V          N G   
Sbjct: 288 VVWLDFVPAA---ADPSKQEVL--------QLLQEKLD--EV------VRSLNTGAGG 326

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 20/173 (11%), Positives = 47/173 (27%), Gaps = 31/173 (17%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAE---DLAKQNKIGCTAVFYAVASESVELVKA 118
               +T L  A E    + +  ++  + ++    L   NK G + + +A+     ++   
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 119 -TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL------YRETKNSLKDDDCIE 168
               G   N       DN+  +P+  +       + + L      +        +   + 
Sbjct: 230 FVEMGIDVNM-----EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVL 284

Query: 169 LLVQLIETGLYAVALQLLHDH----RYLATKRA------KNKETALHVLARKN 211
               +    + A A           + L  K                   +K 
Sbjct: 285 PDRVVWLDFVPAAA---DPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKA 334

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 10/77 (12%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           +  AA      V + + +K       E+    N G        +       +  L   SA
Sbjct: 294 VPAAADPSKQEVLQLLQEK-----LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SA 347

Query: 91  EDLAKQNKIGCTAVFYA 107
             +  +++    +   +
Sbjct: 348 -PVRTRSRSRARSSAVS 363

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 72/287 (25%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
              A  +GD      + ++     G +I      G TALH A   + +D VK L++   A
Sbjct: 44  FLAACSSGDTEEVLRLLER-----GADINYANVDGLTALHQACIDDNVDMVKFLVEN-GA 97

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVRAASL 144
            ++ + +  G   +  A +   +++ +      A +          +++G  P+  A   
Sbjct: 98  -NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV--GAV-----NSEGDTPLDIAEEE 149

Query: 145 GRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETAL 204
              E+++          +  D      +     L     Q L+       + AK+  TAL
Sbjct: 150 AMEELLQNEVNR-----QGVDIEAARKEEERIMLRDAR-QWLNSGHINDVRHAKSGGTAL 203

Query: 205 HVLARKN-------L----GDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIH 253
           HV A K        L     D + K+ +  T                       P   +H
Sbjct: 204 HVAAAKGYTEVLKLLIQARYDVNIKDYDGWT-----------------------P---LH 237

Query: 254 DAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRLEDL 298
            AA  G  +   IL+    D+    +  +    T F +A ++ L  L
Sbjct: 238 AAAHWGKEEACRILVENLCDM----EAVNKVGQTAFDVADEDILGYL 280

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 59  VEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA 118
           V     G TALHVAA     + +K L++     D+  ++  G T +  A      E  + 
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 119 -TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLY-RETKNSLKDDD 165
                           +  G      A       + E    +   +S K + 
Sbjct: 251 LVENLCDMEAV-----NKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 18/156 (11%), Positives = 40/156 (25%), Gaps = 41/156 (26%)

Query: 31  RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA 90
            ++      +G               I  ++ +  +T    AA       + +LL+    
Sbjct: 15  AMEYLIEWKDGHSPSWV-----PSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR-- 67

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK-----------------------ATMKGNEGIA 127
            D+   ++ G TA+ +     S + V+                       A       + 
Sbjct: 68  -DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 126

Query: 128 TL----------PDNDGMLPIVRAASLGRTEVVEFL 153
                        D  G+  +  A  + +T      
Sbjct: 127 EALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 29/124 (23%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI----TNHGKTALHVAAEANRIDFVKKLLKRMS 89
           L   A  G     + + +      G ++       G TALH+AA   R + V+ L++   
Sbjct: 80  LLFVAGLGSDKCVRLLAEA-----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-G 133

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEV 149
           A D+  +++ G TA+  A                             P+     +G  +V
Sbjct: 134 A-DIEVEDERGLTALELAREILKTTPKG------------------NPMQFGRRIGLEKV 174

Query: 150 VEFL 153
           +  L
Sbjct: 175 INVL 178

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 11/94 (11%), Positives = 23/94 (24%), Gaps = 13/94 (13%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
             G     +  +                   A       T  + A      + +   ++ 
Sbjct: 12  GEGAMEYLIEWKDGHSPSWVPSSYIA-----ADVVSEYETPWWTAARKADEQALSQLLED 66

Query: 123 ---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
              +       D +G   ++  A LG  + V  L
Sbjct: 67  RDVDA-----VDENGRTALLFVAGLGSDKCVRLL 95

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 27/127 (21%), Positives = 51/127 (40%), Gaps = 18/127 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ AA  G+ +  ++  D       V +      G TAL+ A      D V+ L  + + 
Sbjct: 77  LHEAAKRGNLSWLRECLDN-----RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI 131

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
            +L +QNK+G TA+  A      ++V+    KG   +       + +  L    A +   
Sbjct: 132 -ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR-----NIEKKLAFDMATNAAC 185

Query: 147 TEVVEFL 153
             +++  
Sbjct: 186 ASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 18/127 (14%)

Query: 31  RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           ++K++RA    +     ++Y + EG+I + IT+   T         R   +         
Sbjct: 13  QVKVFRALYTFEPRTPDELYIE-EGDI-IYITDMSDTNWWKGTSKGRTGLIPSN------ 64

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGR 146
             +A+Q +     +  A    ++  ++  +      N       D  G   +  A   G 
Sbjct: 65  -YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-----DKAGSTALYWACHGGH 118

Query: 147 TEVVEFL 153
            ++VE L
Sbjct: 119 KDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 19/125 (15%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
            ++    G   +    Y         E        LH AA+   + ++++ L       +
Sbjct: 49  WWKGTSKGRTGLIPSNYVA-------EQAESIDNPLHEAAKRGNLSWLRECLDN-RV-GV 99

Query: 94  AKQNKIGCTAVFYAVASESVELVKA--TMKG---NEGIATLPDNDGMLPIVRAASLGRTE 148
              +K G TA+++A      ++V+   T      N+      +  G   +  AA  G  +
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ-----NKLGDTALHAAAWKGYAD 154

Query: 149 VVEFL 153
           +V+ L
Sbjct: 155 IVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 10/115 (8%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           LY A   G   + + ++ +      +E+      G TALH AA     D V+ LL +  A
Sbjct: 110 LYWACHGGHKDIVEMLFTQP----NIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GA 164

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG 145
                +N     A   A  +    L+K    G + + TL + +  L    +    
Sbjct: 165 -RTDLRNIEKKLAFDMATNAACASLLKKKQ-GTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 29/282 (10%), Positives = 63/282 (22%), Gaps = 93/282 (32%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
              G+  +  A          +L       D+     +  T  +   +     L+ +   
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEG--DIIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 122 GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAV 181
             +            P+  AA  G    +                       ++      
Sbjct: 67  AEQ------AESIDNPLHEAAKRGNLSWLRE--------------------CLDNR---- 96

Query: 182 ALQLLHDHRYLATKRAKNKE--TALHVLARKN-----------LG-DKDRKNKEAETLVE 227
                            +K   TAL+                    + +++NK  +T   
Sbjct: 97  -----------VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDT--- 142

Query: 228 SLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY--T 285
           +L                       H AA +G    + +L+ +        D ++     
Sbjct: 143 AL-----------------------HAAAWKGYADIVQLLLAKGART----DLRNIEKKL 175

Query: 286 IFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
            F +A       L K        A      ++ +       +
Sbjct: 176 AFDMATNAACASLLK--KKQGTDAV--RTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 30/263 (11%), Positives = 71/263 (26%), Gaps = 78/263 (29%)

Query: 130 PDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQ--LLH 187
           P   G + + RA         + LY E  + +   D       + +T  +    +     
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD-------MSDTNWWKGTSKGRTGL 60

Query: 188 DHRYLATKRAKNKETALHVLARKN--------LG---DKDRKNKEAETLVESLWEEVILL 236
                  ++A++ +  LH  A++         L      +  +K   T            
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGST------------ 108

Query: 237 SKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD--KKDNY--TIFHIAVK 292
                          ++ A   G+   + +L  +        +  +++    T  H A  
Sbjct: 109 -----------A---LYWACHGGHKDIVEMLFTQP-----NIELNQQNKLGDTALHAAAW 149

Query: 293 NRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLW 352
               D+ + +  +   A    D  + +      +A         +++        ++   
Sbjct: 150 KGYADIVQLL--LAKGAR--TDLRNIEKKLAFDMA---TNAACASLL--------KKKQG 194

Query: 353 FKAVKDVVPPKLRDAKNNKGLTP 375
             AV        R   N +    
Sbjct: 195 TDAV--------RTLSNAEDYLD 209

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 64/180 (35%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AAL  +   A        ++  +            G+TALH+A     ++ V+ LL 
Sbjct: 41  LHIAALYDNLEAAMVLMEAAPELVFEPMTSE----LYEGQTALHIAVINQNVNLVRALLA 96

Query: 87  R-----------MSAEDLAKQNKIGCTAVFYAVASESVELVK------------------ 117
           R           +           G   + +A    S E+V+                  
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156

Query: 118 ----ATMKGNEGIAT--------------------LPDNDGMLPIVRAASLGRTEVVEFL 153
                 ++ N+  A                     +P+N G+ P   A   G   + + L
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 45/391 (11%), Positives = 89/391 (22%), Gaps = 122/391 (31%)

Query: 13  EDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVA 72
             + +E + +      + +  L  A+ +G     ++           E+ ++        
Sbjct: 20  PMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRN-----------ELQHYSLYPNPQG 68

Query: 73  AEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDN 132
                             +   +        +    A+ S  + +      E +  +   
Sbjct: 69  YGNGNDFLGDFNHTN--LQIPTEPEPESPIKLHTE-AAGSYAITEPIT--RESVNIIDPR 123

Query: 133 DGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYL 192
                +   AS    E  E L                               ++H+ +  
Sbjct: 124 HNRTVLHWIASNSSAEKSEDL-------------------------------IVHEAKEC 152

Query: 193 ATKRA------KNKETALHVLARKN-------L---G-DKDRKNKEAETLVESLWEEVIL 235
               A       ++ T L +            L   G D    NK   +           
Sbjct: 153 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS----------- 201

Query: 236 LSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD--KKDNY--TIFHIAV 291
                           +H AA   +   +  ++        K D  + D    T   I  
Sbjct: 202 ------------A---LHQAAANRDFGMMVYMLNSTKL---KGDIEELDRNGMTALMIVA 243

Query: 292 KNRLEDLFKFIY-------DIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSAL 344
            N   D              +        D    KG   LH A   A    + +V     
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA---AQVSNMPIV----- 295

Query: 345 QMQRELLWFKAVKDVVPPKLRDAKNNKGLTP 375
               + L  +   +       D ++  G TP
Sbjct: 296 ----KYLVGEKGSNK------DKQDEDGKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 55/297 (18%), Positives = 97/297 (32%), Gaps = 90/297 (30%)

Query: 34  LYRAALNGDWAVAKDI---YDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKR 87
           L+  A N     ++D+     K     G ++        T L +A  A R   V  L+K 
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 188

Query: 88  MSAEDLAKQNKIGCTAVFYAVASESVELVK----ATMKG---NEGIATLPDNDGMLPIVR 140
             A D    NK   +A+  A A+    ++     +T       E      D +GM  ++ 
Sbjct: 189 -GA-DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL-----DRNGMTALMI 241

Query: 141 AASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK 200
            A     + V                 +L   L+E G          D+   A K ++  
Sbjct: 242 VAHNEGRDQVA--------------SAKL---LVEKGAKV-------DYDGAARKDSEKY 277

Query: 201 --ETALHVLARKN-----------LG-DKDRKNKEAETLVESLWEEVILLSKQEIWELIE 246
              TALH  A+ +            G +KD+++++ +T                      
Sbjct: 278 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT---------------------- 315

Query: 247 QPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRLEDLFKF 301
            P   I  AA  G ++ +  LI++   +    +  D    T   +A  N   ++   
Sbjct: 316 -P---IMLAAQEGRIEVVMYLIQQGASV----EAVDATDHTARQLAQANNHHNIVDI 364

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.0 bits (154), Expect = 9e-11
 Identities = 40/299 (13%), Positives = 88/299 (29%), Gaps = 86/299 (28%)

Query: 56  EIGVEI--TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK------QNKIGCTAVFYA 107
              V I    H +T LH  A  +  +  + L+   + E +A        +    T +  A
Sbjct: 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLA 173

Query: 108 VASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKD 163
           V +    LV      G           +      + +AA+     ++ +           
Sbjct: 174 VLARRRRLVAYLMKAGADPTIY-----NKSERSALHQAAANRDFGMMVY----------- 217

Query: 164 DDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLARKNLGDKDRKNKE 221
                                +L+  +        ++   TAL ++A           ++
Sbjct: 218 ---------------------MLNSTKLKGDIEELDRNGMTALMIVAHNE-------GRD 249

Query: 222 AETLVESLWEEVILLSKQ-EIWELIEQPREL--------IHDAADRGNVQFLSILIREYP 272
                +      +L+ K  ++       ++         +H AA   N+  +  L+ E  
Sbjct: 250 QVASAK------LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK- 302

Query: 273 DLMWKADK--KDNY--TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
                ++K  +D    T   +A +    ++  ++      A   V+  D   +    LA
Sbjct: 303 ----GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG--AS--VEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 62.7 bits (153), Expect = 9e-11
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 21/134 (15%)

Query: 34  LYRAALNG---DWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKK 83
           L   A N      A AK        + D             G+TALH AA+ + +  VK 
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKV-DYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297

Query: 84  LLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIV 139
           L+    + +  KQ++ G T +  A     +E+V     +G           D        
Sbjct: 298 LVGEKGS-NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV-----DATDHTARQ 351

Query: 140 RAASLGRTEVVEFL 153
            A +     +V+  
Sbjct: 352 LAQANNHHNIVDIF 365

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 33/131 (25%), Positives = 45/131 (34%), Gaps = 20/131 (15%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITN-HGKTALHVAAEANRIDFVKKLLKRMSAED 92
              A   G   +   +         +   N +G  AL  AAE   ID VK LL+     D
Sbjct: 76  YLYAGAQGRTEILAYMLKH--ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-D 132

Query: 93  LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATL----------PDNDGMLPIVRAA 142
           +  QN  G TA+  AV            +  + I  L           DN G   +  A 
Sbjct: 133 IDFQNDFGYTALIEAVGLREGN------QLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186

Query: 143 SLGRTEVVEFL 153
             G TE+ + L
Sbjct: 187 QKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 1e-10
 Identities = 40/196 (20%), Positives = 66/196 (33%), Gaps = 34/196 (17%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  A       V + + D        ++      G T L++A   N I+  K L+ R  A
Sbjct: 10  LEAANQRDTKKVKEILQDT-----TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GA 63

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVV 150
            D+  QN I  +   YA A    E++   +K         +  G   ++ AA  G  + V
Sbjct: 64  -DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 151 EFLY---RETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYL----------ATKRA 197
           + L    RE  +  ++D           T L         +  Y           A +  
Sbjct: 123 KLLLEDGREDIDF-QNDFG--------YTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173

Query: 198 KNK--ETALHVLARKN 211
           K+    TA+    +K 
Sbjct: 174 KDNSGRTAMDYANQKG 189

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 50.5 bits (122), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TM 120
           T      L  A + +    VK++L+  +   + + +  G T +  AV +  +E+ KA   
Sbjct: 3   TYEVGALLEAANQRDTKK-VKEILQDTTY-QVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 121 KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           +G   N       ++    P + A + GRTE++ ++
Sbjct: 61  RGADINLQ-----NSISDSPYLYAGAQGRTEILAYM 91

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 35/191 (18%), Positives = 52/191 (27%), Gaps = 38/191 (19%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKR-MSAEDLAKQNKIGCTAVFYAVASESVELVKA 118
            +T  G TALH+A       F+  LL      E L  QN +G TA+  A        V+ 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 119 -TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL---------------YRETKN 159
               G           +  G   +  A  +        L                 ++++
Sbjct: 64  LYAAGAGVLVA-----ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 160 SLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKE--TALHVLARKNLGDKDR 217
              D       V                D R      A+N +  T LHV           
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEE-PRDEDWR--LQLEAENYDGHTPLHVAVIHK------ 169

Query: 218 KNKE-AETLVE 227
            + E    L +
Sbjct: 170 -DAEMVRLLRD 179

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 10/98 (10%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA- 118
                G T LHVA      + V+ L     A+    +   G T +  AV +++  +++  
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

Query: 119 TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
              G              G  P+  A       +   L
Sbjct: 212 LKAGADPTAR-----MYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 26/129 (20%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ A ++ D  + +       D+               G+T LH+A EA     ++ LLK
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEP--------TCGRTPLHLAVEAQAASVLELLLK 213

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
              A D   +   G T +  A+   +  L +     G    E        D + P   + 
Sbjct: 214 A-GA-DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED-----GGDKLSPCSSSG 266

Query: 143 SLGRTEVVE 151
           S   ++  +
Sbjct: 267 SDSDSDNRD 275

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 19/127 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  A+  G+    + + +      G +        ++AL +A+     D V  LL+R   
Sbjct: 40  LIWASAFGEIETVRFLLEW-----GADPHILAKERESALSLASTGGYTDIVGLLLER-DV 93

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
            D+   +  G T + YAV    V+ V+A   +G            + G  P+  A +LG 
Sbjct: 94  -DINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE-----ADSGYTPMDLAVALGY 147

Query: 147 TEVVEFL 153
            +V + +
Sbjct: 148 RKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 14/125 (11%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITN-HGKTALHVAAEANRIDFVKKLLKRMSAED 92
           +++ A  G+    K+   K  G+  V   +  G T L  A+    I+ V+ LL+   A D
Sbjct: 6   IHQLAAQGELDQLKEHLRK--GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GA-D 61

Query: 93  LAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGRTE 148
                K   +A+  A      ++V   + +    N       D +G  P++ A      +
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIY-----DWNGGTPLLYAVRGNHVK 116

Query: 149 VVEFL 153
            VE L
Sbjct: 117 CVEAL 121

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 3/152 (1%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
                 +TALH A  A   + V+ LL+      +  ++  G + +  A ++   E+VKA 
Sbjct: 35  RTDQDSRTALHWACSAGHTEIVEFLLQL-GV-PVNDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY 179
           +     +    + +G  P+  AAS  R E+   L     N    D      +        
Sbjct: 93  LVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151

Query: 180 AVALQLLHDHRYLATKRAKNKETALHVLARKN 211
              + +L  ++     +     T LH+   + 
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.0 bits (140), Expect = 1e-09
 Identities = 36/239 (15%), Positives = 77/239 (32%), Gaps = 28/239 (11%)

Query: 59  VEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA 118
           +E         ++A      +  +++L         + ++   TA+ +A ++   E+V+ 
Sbjct: 1   MEGCVSNIMICNLAYSGKLDELKERILAD--KSLATRTDQDSRTALHWACSAGHTEIVEF 58

Query: 119 -TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLI 174
               G   N+      D+ G  P+  AAS G  E+V+ L  +  +    +      +   
Sbjct: 59  LLQLGVPVNDK-----DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113

Query: 175 ETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVI 234
            +        +L +       +     TA+H  A K                      ++
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM---------------VHIL 158

Query: 235 LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKN 293
           L  K        +    +H A D   V+    L+ +   +    + K+  T   +A   
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI--YIENKEEKTPLQVAKGG 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.7 bits (156), Expect = 4e-11
 Identities = 49/325 (15%), Positives = 88/325 (27%), Gaps = 89/325 (27%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AA      + +       D++ K            G   LH A      +  + LLK
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAK---------DKGGLVPLHNACSYGHYEVTELLLK 112

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
              A  +   +    T +  A +   VE+       G           +  G   +  A 
Sbjct: 113 H-GA-CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV-----NCHGKSAVDMAP 165

Query: 143 SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKET 202
           +    E + + ++             LL    E  L  V   L  +         ++ ET
Sbjct: 166 TPELRERLTYEFKGHS----------LLQAAREADLAKVKKTLALEIINFKQP--QSHET 213

Query: 203 ALHVLARKNLG--------------DKDRKNKEAETLVESLWEEVILLSKQEIWELIEQP 248
           ALH                      + + KNK+  T    L                   
Sbjct: 214 ALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMT---PL------------------- 251

Query: 249 RELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRLEDLFKFIYDIK 306
               H AA+R +   + +L +    +    +  D+   T  H A         + +  + 
Sbjct: 252 ----HVAAERAHNDVMEVLHKHGAKM----NALDSLGQTALHRAALAGHLQTCRLL--LS 301

Query: 307 PIADLMVDCTDEKGNNILHLAGELA 331
             +D        +G     +  E  
Sbjct: 302 YGSD--PSIISLQGFTAAQMGNEAV 324

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 55/351 (15%), Positives = 106/351 (30%), Gaps = 119/351 (33%)

Query: 59  VEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA 118
           V    + K  L  AA +   + +  LL  ++  +    +    T +  A     V +V+ 
Sbjct: 18  VLTGEYKKDELLEAARSGNEEKLMALLTPLNV-NCHASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 119 TM-KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL------------YRET----- 157
            +  G   +       D  G++P+  A S G  EV E L            ++ T     
Sbjct: 77  LLQHGADVHAK-----DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131

Query: 158 --KNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLA--TKRAKNKETALHVLARKNLG 213
             KN +   +   L   L+  G               A  T    + ++A+ +     L 
Sbjct: 132 ASKNRV---EVCSL---LLSHG---------------ADPTLVNCHGKSAVDMAPTPEL- 169

Query: 214 DKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPD 273
                                    +E      +   L+  AA   ++  +   +     
Sbjct: 170 -------------------------RERLTYEFKGHSLLQ-AAREADLAKVKKTLALEII 203

Query: 274 LMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLM------VDCTDEKGNNILHLA 327
                  + + T  H AV +            K +A+L+      V+  ++     LH+A
Sbjct: 204 NF--KQPQSHETALHCAVASL-------HPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254

Query: 328 GELAPQHRLNVVSGSALQMQRELLWFKAVK---DVVPPKLRDAKNNKGLTP 375
              A +   +V+         E+L     K    +      +A ++ G T 
Sbjct: 255 ---AERAHNDVM---------EVL----HKHGAKM------NALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 16/98 (16%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA- 118
           E      T LHVAAE    D ++ L K   A  +   + +G TA+  A  +  ++  +  
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKH-GA-KMNALDSLGQTALHRAALAGHLQTCRLL 299

Query: 119 TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
              G   +          G             E V+ +
Sbjct: 300 LSYGSDPSII-----SLQGFTAAQMGN-----EAVQQI 327

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.9 bits (151), Expect = 4e-11
 Identities = 30/185 (16%), Positives = 54/185 (29%), Gaps = 17/185 (9%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  AAL G+  V +    +       +       G TALH A        V  L+   + 
Sbjct: 25  LLDAALTGELEVVQQAVKE-----MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA- 78

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL--GRTE 148
            ++   +  G T +  A +     +  A ++    I     +DG     +      G  +
Sbjct: 79  -NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD 137

Query: 149 VVEFLYR--ETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHV 206
              +L    ++   +       L     E   +   L           +R   +ET    
Sbjct: 138 CATYLADVEQSMGLMNSGAVYALWDYSAE---FGDELSFREGESVTVLRRDGPEETDWWW 194

Query: 207 LARKN 211
            A   
Sbjct: 195 AALHG 199

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 15/127 (11%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI----TNHGKTALHVAAEA--NRIDFVKKLLKR 87
           L+ AA   D  +   +        G  I     + G TA            D    L   
Sbjct: 91  LHCAASCNDTVICMALVQH-----GAAIFATTLSDGATAFEKCDPYREGYADCATYLADV 145

Query: 88  MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT 147
              + +   N     A++   A    EL  +  +G        D         AA  G+ 
Sbjct: 146 E--QSMGLMNSGAVYALWDYSAEFGDEL--SFREGESVTVLRRDGPEETDWWWAALHGQE 201

Query: 148 EVVEFLY 154
             V   Y
Sbjct: 202 GYVPRNY 208

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 25/192 (13%), Positives = 47/192 (24%), Gaps = 60/192 (31%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TM 120
           +      +           V+  L   +  DL + +  G + + +A       +V+   M
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 121 KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL------------YRET-------K 158
           +G   N       +     P+  AAS G  ++V+ L            +           
Sbjct: 61  RGARINVM-----NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW 115

Query: 159 NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLARKNLGDKD 216
                    E    L+  G               A     NK  E  +            
Sbjct: 116 GQD---QVAED---LVANG---------------ALVSICNKYGEMPVDKAKAPL----- 149

Query: 217 RKNKE-AETLVE 227
              +   E   +
Sbjct: 150 --RELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 14/125 (11%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGV-EITNHGKTALHVAAEANRIDFVKKLLKRMSAED 92
           ++     G+    +   D    E  + +  +HG + LH A    R   V+ L+ R  A  
Sbjct: 9   IFTQCREGNAVAVRLWLDN--TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GA-R 64

Query: 93  LAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGRTE 148
           +   N+   T +  A +    ++V+  +      N       +  G +P+  A   G+ +
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV-----NEHGNVPLHYACFWGQDQ 119

Query: 149 VVEFL 153
           V E L
Sbjct: 120 VAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.0 bits (126), Expect = 4e-08
 Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 27/131 (20%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ A   G  AV +        I                 T LH+AA     D V+KLL+
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVM---------NRGDDTPLHLAASHGHRDIVQKLLQ 93

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
              A D+   N+ G   + YA      ++ +     G   +       +  G +P+ +A 
Sbjct: 94  Y-KA-DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC-----NKYGEMPVDKAK 146

Query: 143 SLGRTEVVEFL 153
           +  R  + E  
Sbjct: 147 APLRELLRERA 157

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.7 bits (146), Expect = 9e-11
 Identities = 36/127 (28%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  AA  GD    + +  +      V        GKTAL V           +LLK+  A
Sbjct: 6   LSGAAARGDVQEVRRLLHRE----LVHPDALNRFGKTALQVMMF-GSTAIALELLKQ-GA 59

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
                Q+  G + V  A  +  ++ +K     G   N      PD  G LPI  A   G 
Sbjct: 60  -SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-----PDGTGALPIHLAVQEGH 113

Query: 147 TEVVEFL 153
           T VV FL
Sbjct: 114 TAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 57.4 bits (140), Expect = 5e-10
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
                G + +H AA    +D +K L++   A D+   +  G   +  AV      +V   
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEH-GA-DVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 120 MKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
                 +       D  G+ P+  A   G  ++V+ L
Sbjct: 121 AAESDLHRR-----DARGLTPLELALQRGAQDLVDIL 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.5 bits (150), Expect = 9e-11
 Identities = 22/215 (10%), Positives = 59/215 (27%), Gaps = 54/215 (25%)

Query: 31  RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA 90
            ++      +G               I  ++ +  +T    AA       + +LL+    
Sbjct: 16  AMEYLIEWKDGHSPSWV-----PSSYIAADVVSEYETPWWTAARKADEQALSQLLEDR-- 68

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK-----------------------ATMKGNEGIA 127
            D+   ++ G TA+ +     S + V+                       A       + 
Sbjct: 69  -DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 127

Query: 128 TL----------PDNDGMLPIVRAASLGRTEVVEFL-YRETKNSLKDDDCIELLVQLIET 176
                        D  G+  +  A  + +T           +  L+       ++ ++E 
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK------VINVLEG 181

Query: 177 GLYAVALQLLHDHRYLATKRAKNKETALHVLARKN 211
            ++  A         +   +    +   +++  K+
Sbjct: 182 QVFEYA----EVDEIVE--KRGKGKDVEYLVRWKD 210

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 35/187 (18%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI----TNHGKTALHVAAEANRIDFVKKLLKRMS 89
           L   A  G     + + +      G ++       G TALH+AA   R + V+ L++   
Sbjct: 81  LLFVAGLGSDKCVRLLAEA-----GADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-G 134

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEV 149
           A D+  +++ G TA+  A            M+           + ++ ++        EV
Sbjct: 135 A-DIEVEDERGLTALELAREILKTTPKGNPMQ----FGRRIGLEKVINVLEGQVFEYAEV 189

Query: 150 VEFLY-----RETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETAL 204
            E +      ++ +  ++  D  +                        A   AK+ E  L
Sbjct: 190 DEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHV---------------AEDVAKDYEDGL 234

Query: 205 HVLARKN 211
                ++
Sbjct: 235 EYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 31/272 (11%), Positives = 64/272 (23%), Gaps = 85/272 (31%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
             G     +  +               A D+        T  + A      + +   ++ 
Sbjct: 13  GEGAMEYLIEWKDGHSPSWVPSSYI--AADV---VSEYETPWWTAARKADEQALSQLLED 67

Query: 123 ---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL-------------YRET-------KN 159
              +       D +G   ++  A LG  + V  L                T         
Sbjct: 68  RDVDA-----VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV 122

Query: 160 SLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLARKNLGDKDR 217
                + +E    L+E G               A    +++   TAL +           
Sbjct: 123 RP---EVVEA---LVELG---------------ADIEVEDERGLTALELAREIL------ 155

Query: 218 KNKE-AETLVE----SLWEEVILLSKQEIWELIEQPRELI---------HDAADRGNVQF 263
                    ++       E+VI + + +++E  E    +          +    +     
Sbjct: 156 -KTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 264 LSILIREYPDLMWKAD--KKDNYTIFHIAVKN 293
             +           A+   KD       AV  
Sbjct: 215 EWVKGV------HVAEDVAKDYEDGLEYAVAE 240

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.3 bits (150), Expect = 9e-11
 Identities = 48/215 (22%), Positives = 70/215 (32%), Gaps = 74/215 (34%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L  AA N      K        +  K            G T LH+AA+    + V+ LL 
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPK---------DAEGSTCLHLAAKKGHYEVVQYLLS 98

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAA 142
                D+  Q+  G T + +A   + V+LVK  + KG   N       DN+  + +  AA
Sbjct: 99  N-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-----DNEENICLHWAA 152

Query: 143 SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK-- 200
             G  ++ E L                    +                      A N   
Sbjct: 153 FSGCVDIAEIL--------------------LAAK---------------CDLHAVNIHG 177

Query: 201 ETALHVLARKN----------LG-DKDRKNKEAET 224
           ++ LH+ AR+N             D   KNKE ET
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGET 212

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.5 bits (135), Expect = 9e-09
 Identities = 48/283 (16%), Positives = 82/283 (28%), Gaps = 90/283 (31%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TM 120
             + ++ LH AAEA  +D    L++   A ++   ++   T +  A  +  +E VK    
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQA-GA-NIDTCSEDQRTPLMEAAENNHLEAVKYLIK 65

Query: 121 KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG 177
            G   +       D +G   +  AA  G  EVV++                    L+  G
Sbjct: 66  AGALVDPK-----DAEGSTCLHLAAKKGHYEVVQY--------------------LLSNG 100

Query: 178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKN-------L----GDKDRKNKEAETLV 226
              V              +     T +              L     D + ++ E     
Sbjct: 101 QMDV------------NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI-- 146

Query: 227 ESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY-- 284
                                    +H AA  G V    IL+    DL       + +  
Sbjct: 147 ---------------------C---LHWAAFSGCVDIAEILLAAKCDL----HAVNIHGD 178

Query: 285 TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
           +  HIA +    D           +D  V   +++G   L  A
Sbjct: 179 SPLHIAARENRYDCVVLFLSRD--SD--VTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 55.1 bits (134), Expect = 1e-08
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 27/131 (20%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           +  A       + K       DI  +          N     LH AA +  +D  + LL 
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIR---------DNEENICLHWAAFSGCVDIAEILLA 165

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
                DL   N  G + +  A      + V     +            + +G  P+  A+
Sbjct: 166 A-KC-DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-----NKEGETPLQCAS 218

Query: 143 SLGRTEVVEFL 153
              +      +
Sbjct: 219 LNSQVWSALQM 229

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 28/148 (18%)

Query: 34  LYRAALNGDWAV------------AKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFV 81
           L+ A                    A+     ++ +        G+  L +AA  N+   V
Sbjct: 97  LHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIV 156

Query: 82  KKLLKRMSAE-DLAKQNKIGCTAVFYAVAS-----ESVELVK----------ATMKGNEG 125
             L +    + DL +Q+  G T +   VA      E+ + V           A +  +  
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216

Query: 126 IATLPDNDGMLPIVRAASLGRTEVVEFL 153
           +  L +NDG+ P++ AA  G+  + + +
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 28/155 (18%), Positives = 44/155 (28%), Gaps = 33/155 (21%)

Query: 31  RLKLYRAALNGDWAVAKDIYDKYEGEIGVEIT-------NHGKTALHVAA---EANRIDF 80
           R  L+     G     + +   +       +T       + GKT L  A     A R D 
Sbjct: 6   RPILFDIVSRGSPDGLEGLL-SFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 81  VKKLLKRMSAEDLAK---------QNKIGCTAVFYAVASESVELVK----------ATMK 121
           +  LL         +             G TA+  A+       V+          A  +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 122 GN---EGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           G              G LP+  AA   +  +V +L
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 33/202 (16%), Positives = 58/202 (28%), Gaps = 35/202 (17%)

Query: 195 KRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELI-- 252
           +     +T L       L     +N     L++   +         + E I  P   +  
Sbjct: 41  REPSTGKTCLPKAL---LNLSAGRNDTIPILLDIAEK------TGNMREFINSPFRDVYY 91

Query: 253 ------HDAADRGNVQFLSILI------------REYPDLMWKADKKDNYTIFHIAVKNR 294
                 H A +R    ++ +L+            R +                 +A    
Sbjct: 92  RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 151

Query: 295 LEDLFKF-IYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWF 353
              +  +   +    AD  +   D +GN +LH    +A        +    +M   LL  
Sbjct: 152 QPHIVHYLTENGHKQAD--LRRQDSRGNTVLHAL--VAIADNTRENTKFVTKMYDLLL-I 206

Query: 354 KAVKDVVPPKLRDAKNNKGLTP 375
           K  K      L    NN GL+P
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSP 228

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 55/223 (24%)

Query: 34  LYRAALNG------------DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFV 81
           L +A LN             D A       ++      ++   G+TALH+A E     +V
Sbjct: 50  LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV 109

Query: 82  KKLLKR------------MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATL 129
           + L+++               +D       G   +  A  +    +V    +     A L
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL 169

Query: 130 --PDNDGMLPIVRAASLG--RTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQL 185
              D+ G   +    ++     E  +F+              ++   L+           
Sbjct: 170 RRQDSRGNTVLHALVAIADNTRENTKFV-------------TKMYDLLLIKCAK------ 210

Query: 186 LHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE-AETLVE 227
           L     L      +  + L + A+              + ++ 
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTG-------KIGIFQHIIR 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 58/293 (19%), Positives = 101/293 (34%), Gaps = 106/293 (36%)

Query: 34  LYRAALNGDWAVAKDIYDKYEG-EI-------GVEITNH----GKTALHVAAEANRIDFV 81
           L  A+ +G      +  ++ +   +       G  + N     G+TALH+AA  +R D  
Sbjct: 14  LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAA 73

Query: 82  KKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGM 135
           K+LL+  SA D   Q+ +G T +  AV++++  + +      AT   +        +DG 
Sbjct: 74  KRLLEA-SA-DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL-DAR-----MHDGT 125

Query: 136 LPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATK 195
            P++ AA L    ++E                     LI +                A  
Sbjct: 126 TPLILAARLAVEGMLED--------------------LINSH---------------ADV 150

Query: 196 RAKNK--ETALHVLARKN----------LG-DKDRKNKEAETLVESLWEEVILLSKQEIW 242
            A +   ++ALH  A  N           G +KD +N   ET                  
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET------------------ 192

Query: 243 ELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKN 293
                P   +  AA  G+ +   +L+  + +     D  D+       IA + 
Sbjct: 193 -----P---LFLAAREGSYETAKVLLDHFANR----DITDHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.1 bits (139), Expect = 3e-09
 Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 19/127 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  AA      + +D+ +        ++    + GK+ALH AA  N +D    LLK   A
Sbjct: 128 LILAARLAVEGMLEDLINS-----HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GA 181

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
            +   QN    T +F A    S E  K         +       D+   LP   A     
Sbjct: 182 -NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-----DHMDRLPRDIAQERMH 235

Query: 147 TEVVEFL 153
            ++V  L
Sbjct: 236 HDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 53.2 bits (129), Expect = 6e-08
 Identities = 25/192 (13%), Positives = 53/192 (27%), Gaps = 65/192 (33%)

Query: 34  LYRAALNGDWAVAK--------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLL 85
           L+ A       V +        D+  +          + G T L +AA       ++ L+
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDAR---------MHDGTTPLILAARLAVEGMLEDLI 144

Query: 86  KRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRA 141
              +  D+   + +G +A+ +A A  +V+        G   +       +N    P+  A
Sbjct: 145 NSHA--DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQ-----NNREETPLFLA 197

Query: 142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK- 200
           A  G  E  + L                    ++                 A +   +  
Sbjct: 198 AREGSYETAKVL--------------------LDHF---------------ANRDITDHM 222

Query: 201 -ETALHVLARKN 211
                 +   + 
Sbjct: 223 DRLPRDIAQERM 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.9 bits (149), Expect = 1e-10
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 43/158 (27%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKR--M 88
           L+ A +    +V + +        G        HG+TA H+A E      ++ LL     
Sbjct: 50  LHLAVITTLPSVVRLLVTA-----GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAP 104

Query: 89  SAEDLAKQNKIGCTAVFYAVASESVELVK-----------------------ATMKGNEG 125
              DL  +N  G TA+  AV +E  E V+                       A    +  
Sbjct: 105 GTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164

Query: 126 IATL----------PDNDGMLPIVRAASLGRTEVVEFL 153
           +  L              G   +  A+  G   +V  L
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 41/268 (15%), Positives = 78/268 (29%), Gaps = 63/268 (23%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAE--DLAKQNKIGCTAVFYAVASESVELVK 117
                G T LH+A     +  V +L+        +L   N +  T +  AV +    +V+
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 118 A-TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL------YRETKNSLKDDDCI 167
                G           D  G      A        +  L            + ++ D  
Sbjct: 64  LLVTAGASPMAL-----DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDG- 116

Query: 168 ELLVQLIETGLYAVALQLLHDH----RYLATKRA-------KNKETALHVLARKNLGDKD 216
                   T L+        +     + L  + A       K+  + L      N     
Sbjct: 117 -------LTALHVAV---NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENN----- 161

Query: 217 RKNKEAETLVESLWEEVILLSKQ-EIWELIEQPRELIHDAADRGNVQFLSILIREYPDLM 275
             +     +V+      +LL     +   +      +H A+ RG +  +  L+R   D  
Sbjct: 162 --SLS---MVQ------LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS- 209

Query: 276 WKADKKDNY--TIFHIAVKNRLEDLFKF 301
                K+ +  T   +A   R+ D+ + 
Sbjct: 210 ---SLKNCHNDTPLMVARSRRVIDILRG 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.5 bits (135), Expect = 9e-09
 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 20/128 (15%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI----TNHGKTALHVAAEANRIDFVKKLLKRMS 89
           L+ A         + + ++     G +I       G++ L  A E N +  V+ LL+   
Sbjct: 120 LHVAVNTECQETVQLLLER-----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH-G 173

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLG 145
           A ++  Q   G +A+  A     + LV+     G   +       +     P++ A S  
Sbjct: 174 A-NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-----KNCHNDTPLMVARSRR 227

Query: 146 RTEVVEFL 153
             +++   
Sbjct: 228 VIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 55.5 bits (135), Expect = 9e-09
 Identities = 35/195 (17%), Positives = 58/195 (29%), Gaps = 67/195 (34%)

Query: 34  LYRAALNGDWAVAK-----------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVK 82
            + A  +      +           D+  +            G TALHVA      + V+
Sbjct: 83  AHLACEHRSPTCLRALLDSAAPGTLDLEAR---------NYDGLTALHVAVNTECQETVQ 133

Query: 83  KLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPI 138
            LL+R  A+  A   K G + + +AV + S+ +V+     G   N          G   +
Sbjct: 134 LLLER-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-----MYSGSSAL 187

Query: 139 VRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAK 198
             A+  G   +V  L                    + +G               A    K
Sbjct: 188 HSASGRGLLPLVRTL--------------------VRSG---------------ADSSLK 212

Query: 199 NK--ETALHVLARKN 211
           N   +T L V   + 
Sbjct: 213 NCHNDTPLMVARSRR 227

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 2e-10
 Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           +++ A  G+        ++        I      G T L  AA   +I  V+ LL+   A
Sbjct: 7   VHQLAAQGEMLYLATRIEQ-----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GA 60

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGR 146
            D     K   +A+  A +    ++VK     G   NE      D +G  P++ A     
Sbjct: 61  -DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY-----DWNGGTPLLYAVHGNH 114

Query: 147 TEVVEFL 153
            + V+ L
Sbjct: 115 VKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 58.9 bits (144), Expect = 2e-10
 Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 19/127 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  AA +G  AV + +        G +        ++AL +A      D VK LL     
Sbjct: 40  LMWAAAHGQIAVVEFLLQN-----GADPQLLGKGRESALSLACSKGYTDIVKMLLDC-GV 93

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGR 146
            D+ + +  G T + YAV    V+ VK  +  G            + G   +  A +LG 
Sbjct: 94  -DVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIE-----TDSGYNSMDLAVALGY 147

Query: 147 TEVVEFL 153
             V + +
Sbjct: 148 RSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 64  HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KG 122
               ++H  A    + ++   +++     +   ++ G T + +A A   + +V+  +  G
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-EN-VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 123 ---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
                             +  A S G T++V+ L
Sbjct: 60  ADPQLL-----GKGRESALSLACSKGYTDIVKML 88

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.3 bits (150), Expect = 2e-10
 Identities = 56/334 (16%), Positives = 107/334 (32%), Gaps = 105/334 (31%)

Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KG- 122
               L  A +   +D V++LL+   A    ++ + G T +  AV     ++V+  +  G 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 123 --NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYA 180
                       +G  P + AA  G  ++++                      +  G   
Sbjct: 64  DPVLR-----KKNGATPFLLAAIAGSVKLLKL--------------------FLSKG--- 95

Query: 181 VALQLLHDHRYLATKRAKNK--ETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS- 237
                       A     +    TA    A            +A   ++       L   
Sbjct: 96  ------------ADVNECDFYGFTAFMEAAVYG-------KVKA---LK------FLYKR 127

Query: 238 ------KQEIWELIEQPREL----IHDAADRGNVQFLSILIREYPDLMWKAD--KKDNY- 284
                 +++  E  E+ R+     + DAA++G+V+ L IL+ E       AD    DN  
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM-----GADVNACDNMG 182

Query: 285 -TIFHIAVKNRLEDLFKFI--YDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSG 341
                 A+ +  +   + I    +   AD  V+   E+G   L LA     +  L +V  
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGAD--VNVRGERGKTPLILA---VEKKHLGLV-- 235

Query: 342 SALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTP 375
                  + L  +   ++      +  ++ G T 
Sbjct: 236 -------QRLLEQEHIEI------NDTDSDGKTA 256

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.2 bits (147), Expect = 4e-10
 Identities = 64/296 (21%), Positives = 115/296 (38%), Gaps = 61/296 (20%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI----TNHGKTALHVAAEANRIDFVKKLLKRMS 89
           L +A  N D  + + + +      G  +       G T LH A + +R D V+ LL+   
Sbjct: 9   LIKAVQNEDVDLVQQLLEG-----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-G 62

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLG 145
           A D   + K G T    A  + SV+L+K    KG   NE      D  G    + AA  G
Sbjct: 63  A-DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-----DFYGFTAFMEAAVYG 116

Query: 146 RTEVVEFLYR-----ETKNSLKDDDCIELLVQLIETGLYAVAL-------QLLHDHRYLA 193
           + + ++FLY+       +   K  +  E L +   T L   A        ++L D    A
Sbjct: 117 KVKALKFLYKRGANVNLRR--KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG-A 173

Query: 194 TKRAKNK--ETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSK-QEIWELIEQPRE 250
              A +     AL      +       + + E +        +LL    ++    E+ + 
Sbjct: 174 DVNACDNMGRNALIHALLSS------DDSDVEAITH------LLLDHGADVNVRGERGKT 221

Query: 251 LIHDAADRGN---VQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRLEDLFKF 301
            +  A ++ +   VQ L  L +E+ ++    +  D+   T   +AV+ +L+ + + 
Sbjct: 222 PLILAVEKKHLGLVQRL--LEQEHIEI----NDTDSDGKTALLLAVELKLKKIAEL 271

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 21/131 (16%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVK---KLLKR 87
           L  AA  G   V K + D+     G ++    N G+ AL  A  ++    V+    LL  
Sbjct: 152 LMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207

Query: 88  MSAEDLAKQNKIGCTAVFYAVASESVELVKA--TMKG---NEGIATLPDNDGMLPIVRAA 142
             A D+  + + G T +  AV  + + LV+     +    N+      D+DG   ++ A 
Sbjct: 208 HGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-----DSDGKTALLLAV 261

Query: 143 SLGRTEVVEFL 153
            L   ++ E L
Sbjct: 262 ELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKR 87
           L  A       + + + ++      +EI    + GKTAL +A E       + L KR
Sbjct: 223 LILAVEKKHLGLVQRLLEQE----HIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 59  VEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA 118
           V+        L  ++     D V++++  +   D +  N  G TA+  AV +   E+VK 
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVD--DPSLPNDEGITALHNAVCAGHTEIVKF 88

Query: 119 -TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
               G   N       D+DG  P+  AAS    +V +FL
Sbjct: 89  LVQFGVNVNAA-----DSDGWTPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 30/195 (15%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  ++L G++ + + I  +       +     + G TALH A  A   + VK L++    
Sbjct: 41  LLDSSLEGEFDLVQRIIYE-----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV- 94

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG-NEGIATLPDNDGMLPIVRAASLGRTE 148
            ++   +  G T +  A +  +V++ K  +  G      T  D             G T+
Sbjct: 95  -NVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153

Query: 149 VVEFLYRETKN-SLKDDDCIELLVQLIETGLYAVA------LQLLHDHRYLATKRAKNKE 201
             +FLY   +   + +              L+         L +          R    E
Sbjct: 154 CSQFLYGVQEKMGIMNKGV--------IYALWDYEPQNDDELPMKEGDCMTIIHREDEDE 205

Query: 202 TALHVLARKNLGDKD 216
                     L DK+
Sbjct: 206 IEWWWA---RLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 12/95 (12%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-K 121
             G+ +L      N      + +         K N +    +  +      +LV+  + +
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAH-GMR--VKFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 122 G---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
               +       +++G+  +  A   G TE+V+FL
Sbjct: 60  VDDPSLP-----NDEGITALHNAVCAGHTEIVKFL 89

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.7 bits (146), Expect = 2e-10
 Identities = 40/214 (18%), Positives = 64/214 (29%), Gaps = 83/214 (38%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AA       AK       D   +          N G+T LH A  A+     + L++
Sbjct: 29  LHLAARYSRSDAAKRLLEASADANIQ---------DNMGRTPLHAAVSADAQGVFQILIR 79

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATL----------PDNDGML 136
              A DL  +   G T            L+ A     EG+              D+ G  
Sbjct: 80  N-RATDLDARMHDGTTP-----------LILAARLAVEGMLEDLINSHADVNAVDDLGKS 127

Query: 137 PIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKR 196
            +  AA++   +    L                    ++ G               A K 
Sbjct: 128 ALHWAAAVNNVDAAVVL--------------------LKNG---------------ANKD 152

Query: 197 AKNK--ETALHVLARKNLGDKDRKNKE-AETLVE 227
            +N   ET L + AR+        + E A+ L++
Sbjct: 153 MQNNREETPLFLAAREG-------SYETAKVLLD 179

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.3 bits (137), Expect = 3e-09
 Identities = 31/131 (23%), Positives = 44/131 (33%), Gaps = 27/131 (20%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L  AA      + +       D+             + GK+ALH AA  N +D    LLK
Sbjct: 96  LILAARLAVEGMLEDLINSHADVNAV---------DDLGKSALHWAAAVNNVDAAVVLLK 146

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAA 142
              A +   QN    T +F A    S E  K  +      +       D+   LP   A 
Sbjct: 147 N-GA-NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-----DHMDRLPRDIAQ 199

Query: 143 SLGRTEVVEFL 153
                ++V  L
Sbjct: 200 ERMHHDIVRLL 210

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 49/306 (16%), Positives = 87/306 (28%), Gaps = 32/306 (10%)

Query: 17  KESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKY---EGEIGVEITNHGKTALHVAA 73
           K+       + I   +  + AA+ G  +    +         EI   I      A  +AA
Sbjct: 79  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTL--CLLLTSDEIVKVIQAENYQAFRLAA 136

Query: 74  EANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA--TMKGNEGIATLPD 131
           E   +  + +L +    E +A        A   A  +  + ++     +   E  A +  
Sbjct: 137 ENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA 196

Query: 132 NDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDC------------IELLVQLIETGLY 179
            +       A   G   V+ FL          +              I   V  ++    
Sbjct: 197 ENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD 256

Query: 180 AVALQLLHDHRYLATK-RAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSK 238
           A  L        L TK         L  L R+N       ++     +  L     + + 
Sbjct: 257 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN-------DEVLLDDIRFLLSIPGIKAL 309

Query: 239 QEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDL 298
                +     EL+  A   GN    ++L+     L     K +NY   +I       DL
Sbjct: 310 APTATIPGDANELLRLALRLGNQGACALLLSIPSVL--ALTKANNY---YINETGGRLDL 364

Query: 299 FKFIYD 304
                +
Sbjct: 365 RAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 37/289 (12%), Positives = 73/289 (25%), Gaps = 52/289 (17%)

Query: 51  DKYEGEIGVEITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107
            K       +     +    VAA     + +D +  LL     E +         A   A
Sbjct: 78  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLA 135

Query: 108 VASESVELVKA-TMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR----ETKNSLK 162
             +  + ++          I  +   +       AA  G   V+  L      E    ++
Sbjct: 136 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 195

Query: 163 DDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA 222
            ++        +  G + V    L D   +      ++           +     + KE 
Sbjct: 196 AENYYAFRWAAVGRGHHNVI-NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 254

Query: 223 ETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKD 282
                                      +    +   G             DL+ K++   
Sbjct: 255 --------------------------HDAFKLSNPDG-----------VFDLVTKSECLQ 277

Query: 283 NYTIFHIAVKN---RLEDLFKFIYDIKPIADLM-VDCTDEKGNNILHLA 327
            + +    ++     L D  +F+  I  I  L          N +L LA
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 326

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 57.0 bits (139), Expect = 3e-10
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 27/131 (20%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AA NG   V K       D+  K           +G+T LH+AA    ++ VK LL+
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAK---------DKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAA 142
              A D+  ++K G T +  A  +  +E+VK  +  G   N       D +G  P+  AA
Sbjct: 57  A-GA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----DKNGRTPLHLAA 109

Query: 143 SLGRTEVVEFL 153
             G  EVV+ L
Sbjct: 110 RNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.8 bits (123), Expect = 5e-08
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 48/154 (31%)

Query: 64  HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG 122
           +G+T LH+AA    ++ VK LL+   A D+  ++K G T +  A  +  +E+VK     G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 123 ---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY 179
              N       D +G  P+  AA  G  EVV+ L                    +E G  
Sbjct: 59  ADVNAK-----DKNGRTPLHLAARNGHLEVVKLL--------------------LEAG-- 91

Query: 180 AVALQLLHDHRYLATKRAKNK--ETALHVLARKN 211
                        A   AK+K   T LH+ AR  
Sbjct: 92  -------------ADVNAKDKNGRTPLHLAARNG 112

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 26/147 (17%), Positives = 46/147 (31%), Gaps = 27/147 (18%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGV----EITNHGKTALHVAAEANRIDFVK 82
           L+ A         K       D++ +  G             G+  L +AA   + D V 
Sbjct: 94  LHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

Query: 83  KLLKRMSAE-DLAKQNKIGCTAVFYAVASESVE-----LVKATMKGNEGIA--------- 127
            LL+       L   + +G T +   V           LV     G   +          
Sbjct: 154 YLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL 213

Query: 128 -TLPDNDGMLPIVRAASLGRTEVVEFL 153
             + ++ G+ P+  AA  G+ E+   +
Sbjct: 214 EEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 40/233 (17%), Positives = 72/233 (30%), Gaps = 55/233 (23%)

Query: 31  RLKLYRAALNGDWAVAKDIYD------KYEGEIGVEITNHGKTALHVAA---EANRIDFV 81
           R +L+     G       + +      KY  +      + GKT L  A    +      +
Sbjct: 3   RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACI 62

Query: 82  KKLL---------KRMSAEDLAKQNKIGCTAVFYAVASESVELVK------------ATM 120
             LL         K +       +   G +A+  A+   S++ VK            A  
Sbjct: 63  MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR--------ETKNSL----------- 161
           +  +         G LP+  AA   + +VV +L          E  +SL           
Sbjct: 123 RFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182

Query: 162 -KDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKE--TALHVLARKN 211
             +      LV  +  GL  +  +L      +  +   N +  T L + A++ 
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCP---TVQLEEISNHQGLTPLKLAAKEG 232

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 32/196 (16%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 195 KRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELI-- 252
                 +T L       L  +D  N     L++   +              E  +     
Sbjct: 38  TEGSTGKTCLMKAV---LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL 94

Query: 253 HDAADRGNVQFLSILIR-----------EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF 301
           H A ++ ++Q + +L+             +                 +A   +  D+  +
Sbjct: 95  HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

Query: 302 -IYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVV 360
            + +    A   ++ TD  GN +LH    +A     N    SAL +       +    + 
Sbjct: 155 LLENPHQPAS--LEATDSLGNTVLHALVMIADNSPEN----SALVIHMYDGLLQMGARLC 208

Query: 361 P-PKLRDAKNNKGLTP 375
           P  +L +  N++GLTP
Sbjct: 209 PTVQLEEISNHQGLTP 224

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 7e-10
 Identities = 66/426 (15%), Positives = 130/426 (30%), Gaps = 123/426 (28%)

Query: 6   SLSKQLKEDKRKESD----EQLPAETITRRL------KLYRAALNGDWAVAKDIYDKYEG 55
            L  Q+  +    SD     +L   +I   L      K Y   L     V  ++ +    
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----LVLLNVQNAKAW 259

Query: 56  E---IG---------VEITN--HGKTALHVAAEANRIDFVKK-----LLK--RMSAEDLA 94
               +           ++T+     T  H++ + + +          LLK      +DL 
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 95  KQNK---------IG-------CTAVFY---------AVASESVE-LVKATMKGN-EGIA 127
           ++           I         T   +          +   S+  L  A  +   + ++
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 128 TLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQL-- 185
             P +     I        T ++  ++ +    +   D + ++ +L +  L  V  Q   
Sbjct: 380 VFPPS---AHI-------PTILLSLIWFD----VIKSDVMVVVNKLHKYSL--VEKQPKE 423

Query: 186 ----LHDHRYLATKRAKNKETALH--VLARKNLGDKDRKNKEAETLVESLWEEVIL--LS 237
               +    YL  K     E ALH  ++   N+      +      ++  +   I   L 
Sbjct: 424 STISIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 238 KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLED 297
             E  E +   R +  D       +FL   IR +    W A           ++ N L+ 
Sbjct: 483 NIEHPERMTLFRMVFLD------FRFLEQKIR-HDSTAWNASG---------SILNTLQQ 526

Query: 298 LF---KFIYDIKPIADLMVD------------CTDEKGNNILHLAGELAPQHRLNVVSGS 342
           L     +I D  P  + +V+                K  ++L +A  L  +    +   +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA--LMAEDE-AIFEEA 583

Query: 343 ALQMQR 348
             Q+QR
Sbjct: 584 HKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 70/481 (14%), Positives = 152/481 (31%), Gaps = 138/481 (28%)

Query: 187 HDHRYLATKRA----KNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIW 242
           H H ++  +      + K+  L V     + + D K+      V+ + + +  LSK+EI 
Sbjct: 2   HHHHHMDFETGEHQYQYKDI-LSVFEDAFVDNFDCKD------VQDMPKSI--LSKEEID 52

Query: 243 ELIEQPRE---------LIHDAADRGNVQFL-SILIREYPDLM--WKADKKD---NYTIF 287
            +I               +    +    +F+  +L   Y  LM   K +++       ++
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 288 HIAVKNRLE---DLFK--FIYDIKPIADL-MVDCTDEKGNNI-LH---------LAGELA 331
            I  ++RL     +F    +  ++P   L           N+ +          +A ++ 
Sbjct: 113 -IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 332 PQHRL--------------NVVSGSALQMQRELLWFKAVKDVV-------PPKLR--DAK 368
             +++              N  S   +    + L ++   +           KLR    +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 369 NNKGLTPKALF-SKEHEE----LK--RNGETWMKDTASSCMIVAT----LIATIVFAAAI 417
                  + L  SK +E     L   +N + W      SC I+ T     +   + AA  
Sbjct: 232 AEL----RRLLKSKPYENCLLVLLNVQNAKAW-NAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 418 TVPGGNKEDTGL------PFFRQKASFKIF-----AVSN---VISLVASSVS-----IVN 458
           T    +     L          +    +        ++     +S++A S+        N
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 459 FLSIVAPRYAE--EDFLRLLPTKLLVGFATLFVAIAAMMVVFSATSYI---VFEDGSLWI 513
           +  +   +     E  L +L       +  +F  ++    VF  +++I   +     +W 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAE---YRKMFDRLS----VFPPSAHIPTILLS--LIWF 397

Query: 514 AILATVISSMPVILF----VKQHFR----FFYDVLRST-------YASH------YPIPK 552
            ++ + +  +   L     V++  +        +           YA H      Y IPK
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 553 G 553
            
Sbjct: 458 T 458

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 51/213 (23%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           ++ AA++G     +        +            T    + LH A     +  VK LLK
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNII---------TADHVSPLHEACLGGHLSCVKILLK 113

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR 146
             +   +        T +F A  S S + V   +    G +  P++D   PI  AA  G 
Sbjct: 114 HGA--QVNGVTADWHTPLFNACVSGSWDCVNLLL--QHGASVQPESDLASPIHEAARRGH 169

Query: 147 TEVVEFL--YRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDH----RYLATKRA--- 197
            E V  L  Y    +  K             T LY       +      + L    A   
Sbjct: 170 VECVNSLIAYGGNIDH-KISHL--------GTPLYLAC---ENQQRACVKKLLESGADVN 217

Query: 198 --KNKETALHVLARKNLGDKDRKNKE-AETLVE 227
             K +++ LH + R         ++E A  L++
Sbjct: 218 QGKGQDSPLHAVVRTA-------SEELACLLMD 243

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 56.3 bits (137), Expect = 6e-09
 Identities = 40/285 (14%), Positives = 73/285 (25%), Gaps = 97/285 (34%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TM 120
                + +H AA       ++ L+ +     +        + +  A     +  VK    
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQ-GW-AVNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 121 KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG 177
            G   N         D   P+  A   G  + V                      L++ G
Sbjct: 114 HGAQVNGV-----TADWHTPLFNACVSGSWDCVNL--------------------LLQHG 148

Query: 178 LYAVALQLLHDHRYLATKRAKN-KETALHVLARKN-------L----GDKDRKNKEAETL 225
                          A+ + ++   + +H  AR+        L    G+ D K     T 
Sbjct: 149 ---------------ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGT- 192

Query: 226 VESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD---KKD 282
              L                       + A +      +  L+         AD    K 
Sbjct: 193 --PL-----------------------YLACENQQRACVKKLLES------GADVNQGKG 221

Query: 283 NYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
             +  H  V+   E+L   + D    AD      + +G   + L 
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFG--AD--TQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.2 bits (121), Expect = 7e-07
 Identities = 32/209 (15%), Positives = 60/209 (28%), Gaps = 69/209 (33%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ A L G  +  K        +            T    T L  A  +   D V  LL+
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNGV---------TADWHTPLFNACVSGSWDCVNLLLQ 146

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
              A  +  ++    + +  A     VE V +    G   +        +    P+  A 
Sbjct: 147 H-GA-SVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDH-----KISHLGTPLYLAC 198

Query: 143 SLGRTEVVEFL-----------YRET-------KNSLKDDDCIELLVQLIETGLYAVALQ 184
              +   V+ L            +++         S    +   L   L++ G       
Sbjct: 199 ENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASE---ELACL---LMDFG------- 245

Query: 185 LLHDHRYLATKRAKNKE--TALHVLARKN 211
                   A  +AKN E    + ++  ++
Sbjct: 246 --------ADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 20/124 (16%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           ++ AA  G       +        G  I    +H  T L++A E  +   VKKLL+   A
Sbjct: 161 IHEAARRGHVECVNSLIAY-----GGNIDHKISHLGTPLYLACENQQRACVKKLLES-GA 214

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGR 146
           +    Q K   + +   V + S EL    M  G           + +G  P+        
Sbjct: 215 D--VNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK-----NAEGKRPVELVPPESP 267

Query: 147 TEVV 150
              +
Sbjct: 268 LAQL 271

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.2 bits (137), Expect = 2e-09
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 19/128 (14%)

Query: 33  KLYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMS 89
           KL  AA  G     + +        G ++      G T LH+AA    ++ V+ LLK   
Sbjct: 17  KLLEAARAGRDDEVRILMAN-----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN-G 70

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLG 145
           A D+   +  G T +  A     +E+V+     G   N       D +G  P+  AA  G
Sbjct: 71  A-DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAN-----DMEGHTPLHLAAMFG 124

Query: 146 RTEVVEFL 153
             E+VE L
Sbjct: 125 HLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 55.8 bits (136), Expect = 2e-09
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 27/131 (20%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AA NG   + +       D+             + G T L +AA    ++ V+ LLK
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGADVNAV---------DHAGMTPLRLAALFGHLEIVEVLLK 101

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAA 142
              A D+   +  G T +  A     +E+V+     G   N       D  G      + 
Sbjct: 102 N-GA-DVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ-----DKFGKTAFDISI 154

Query: 143 SLGRTEVVEFL 153
             G  ++ E L
Sbjct: 155 DNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 6e-08
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 15/104 (14%)

Query: 58  GVEITNH----GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESV 113
           G    +H        L  AA A R D V+ L+    A D+  ++  G T +  A  +  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMAN-GA-DVNAEDASGWTPLHLAAFNGHL 60

Query: 114 ELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           E+V+  +  G   N       D+ GM P+  AA  G  E+VE L
Sbjct: 61  EIVEVLLKNGADVNAV-----DHAGMTPLRLAALFGHLEIVEVL 99

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 34/187 (18%), Positives = 57/187 (30%), Gaps = 55/187 (29%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           + +A   G +   +++ +      G ++        T LH AA  NRID VK  + +  A
Sbjct: 13  IVKATQYGIYERCRELVEA-----GYDVRQPDKENVTLLHWAAINNRIDLVKYYISK-GA 66

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGR 146
                   +  T + +A     + +V   M  G   +       D +G   I  AA  G 
Sbjct: 67  IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI-----DGEGCSCIHLAAQFGH 121

Query: 147 TEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETAL 204
           T +V +L                    I  G                     ++   T L
Sbjct: 122 TSIVAYL--------------------IAKG---------------QDVDMMDQNGMTPL 146

Query: 205 HVLARKN 211
              A + 
Sbjct: 147 MWAAYRT 153

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 7e-09
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 35/127 (27%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK-- 117
            I ++    +  A +    +  ++L++     D+ + +K   T + +A  +  ++LVK  
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEA-GY-DVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 118 ---------------------ATMKGNEGIATL----------PDNDGMLPIVRAASLGR 146
                                AT +G+  +              D +G   I  AA  G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 147 TEVVEFL 153
           T +V +L
Sbjct: 122 TSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.7 bits (125), Expect = 2e-07
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAE-ANRIDFVKKLLKRMS 89
           ++ AA  G  ++   +  K     G ++     +G T L  AA   + +D  + LL   +
Sbjct: 113 IHLAAQFGHTSIVAYLIAK-----GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF-N 166

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLG 145
                       TA+ +AV + +  ++      G   +       +  G   +  A    
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-----QNIKGESALDLAKQRK 221

Query: 146 RTEVVEFL 153
              ++  L
Sbjct: 222 NVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 50.9 bits (123), Expect = 3e-07
 Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 21/129 (16%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI----TNHGKTALHVAAEANRIDFVKKLLKRMS 89
           L+ AA+N    + K     Y    G  +     +   T LH A     +  V +L+K   
Sbjct: 46  LHWAAINNRIDLVK-----YYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-G 99

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLG 145
           A D +  +  GC+ +  A       +V     KG   +       D +GM P++ AA   
Sbjct: 100 A-DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM-----DQNGMTPLMWAAYRT 153

Query: 146 -RTEVVEFL 153
              +    L
Sbjct: 154 HSVDPTRLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 30/188 (15%), Positives = 56/188 (29%), Gaps = 56/188 (29%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ A   G  ++         D                G + +H+AA+      V  L+ 
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLI---------DGEGCSCIHLAAQFGHTSIVAYLIA 130

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASE-SVELVKATMKGNEGIATLPDNDGMLPIVRAASLG 145
           +    D+   ++ G T + +A     SV+  +  +  N  +           +  A   G
Sbjct: 131 K-GQ-DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG 188

Query: 146 RTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETA 203
            T V+  L                    +E G               A   A+N   E+A
Sbjct: 189 NTTVISLL--------------------LEAG---------------ANVDAQNIKGESA 213

Query: 204 LHVLARKN 211
           L +  ++ 
Sbjct: 214 LDLAKQRK 221

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 13/129 (10%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ A ++ + A+  ++  +        +    N  +T LH+A   N+ +  + LL     
Sbjct: 12  LHLAIIHEEKALTMEVI-RQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGC- 69

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVRAASL 144
            D   ++  G T +  A     +  V        T   +  +    + +G   +  A+  
Sbjct: 70  -DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL-KATNYNGHTCLHLASIH 127

Query: 145 GRTEVVEFL 153
           G   +VE L
Sbjct: 128 GYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 14/139 (10%)

Query: 34  LYRAALNGDWAVAKDI----YDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS 89
           L+ A   G  A    +       +   I      +G T LH+A+    +  V+ L+    
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL-G 140

Query: 90  AEDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLG 145
           A+  A++   G TA+  AV  ++ +LV   +  G   N          G  P        
Sbjct: 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV-----TYQGYSPYQLTWGRP 195

Query: 146 RTEVVEFLYRETKNSLKDD 164
            T + + L + T  +L+  
Sbjct: 196 STRIQQQLGQLTLENLQML 214

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 74/284 (26%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAE--DLAKQNKIGCTAVFYAVASESVELVK 117
           ++T  G + LH+A          ++++++  +   L  QN +  T +  AV +   E+ +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 118 ATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG 177
           A +        L D  G  P+  A   G    V                      L ++ 
Sbjct: 63  ALLGAGCDP-ELRDFRGNTPLHLACEQGCLASVGV--------------------LTQSC 101

Query: 178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS 237
                  +L            N  T LH+ +                +VE      +L+S
Sbjct: 102 TTPHLHSILK-------ATNYNGHTCLHLASIHG-------YLG---IVE------LLVS 138

Query: 238 K------QEIWE----LIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDN--YT 285
                  QE       L        H A D  N   +S+L++   D+    ++     Y+
Sbjct: 139 LGADVNAQEPCNGRTAL--------HLAVDLQNPDLVSLLLKCGADV----NRVTYQGYS 186

Query: 286 IFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE 329
            + +        + + +   +   +        +  +      E
Sbjct: 187 PYQLTWGRPSTRIQQQL--GQLTLE--NLQMLPESEDEESYDTE 226

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 61/196 (31%)

Query: 58  GVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117
           G    +     L  AA+A  ++ VKKL    S  +         T + +A     V +V+
Sbjct: 1   GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVE 59

Query: 118 A-TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL------------YRET---- 157
                G   +       D  G++P+  A S G  EV E L            ++ T    
Sbjct: 60  YLLQHGADVHAK-----DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE 114

Query: 158 ---KNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLARKNL 212
              K      +  +L   L++ G               A    KN+   T L  L +   
Sbjct: 115 AAAKGKY---EICKL---LLQHG---------------ADPTKKNRDGNTPLD-LVKDG- 151

Query: 213 GDKDRKNKE-AETLVE 227
                 + +  + L  
Sbjct: 152 ------DTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.5 bits (117), Expect = 7e-07
 Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 32/133 (24%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AA     +V +       D++ K            G   LH A      +  + L+K
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGADVHAK---------DKGGLVPLHNACSYGHYEVAELLVK 96

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVR 140
              A  +   +    T +  A A    E+ K      A     +      + DG  P+  
Sbjct: 97  H-GA-VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP--TKK-----NRDGNTPL-D 146

Query: 141 AASLGRTEVVEFL 153
               G T++ + L
Sbjct: 147 LVKDGDTDIQDLL 159

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L++AA   D  + K       D              + G TAL+ A ++  +  VK  +K
Sbjct: 66  LHQAATLEDTKIVKILLFSGLDDSQF---------DDKGNTALYYAVDSGNMQTVKLFVK 116

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR 146
           + +   +        T+ ++AV    V +V   +  +E  +T      +  I      G 
Sbjct: 117 K-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFL--SEIPSTFDLAILLSCIHITIKNGH 173

Query: 147 TEVVEFL 153
            +++  L
Sbjct: 174 VDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 53.3 bits (129), Expect = 7e-08
 Identities = 33/287 (11%), Positives = 80/287 (27%), Gaps = 73/287 (25%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI-GCTAVFYAVASESVELVKA-T 119
             HG +A + A   N +  V  LL        A +N +     +  A   E  ++VK   
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNA-----GALKNLLENEFPLHQAATLEDTKIVKILL 82

Query: 120 MKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR-----ETKNSLKDDDCIELLV 171
             G   ++      D+ G   +  A   G  + V+   +           K         
Sbjct: 83  FSGLDDSQF-----DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG--KTG------- 128

Query: 172 QLIETGLYAVALQLLHDH----RYLATKRA-----KNKETALHVLARKN-------L--- 212
              +T  Y      + +      Y  ++           + +H+  +         L   
Sbjct: 129 --WKTSFYHAV---MLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183

Query: 213 -GDKDRKNKEAETL-----VESLWEEVILLSKQEIWELIEQ---PRELIHDAADRGNVQF 263
               +  N           +++   E++         L +          +     + + 
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQA-------LFKYDINIYSANLENVLLDDAEI 236

Query: 264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD 310
             ++I ++ +               I   N+L+++     +++ +  
Sbjct: 237 AKMIIEKHVEY----KSDSYTKDLDIVKNNKLDEIISKNKELRLMYV 279

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 54.3 bits (132), Expect = 3e-09
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-K 121
           +        A +   +D VK  + +   ED+ +  + G   + YA     +E+++  + K
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62

Query: 122 G---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           G   N      PD   + P++ A   G    V+ L
Sbjct: 63  GADINA-----PDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.8 bits (128), Expect = 9e-09
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 19/125 (15%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
              A  NGD    KD   K     G ++      G+  LH AA+  +++ ++ LL +  A
Sbjct: 11  FMWALKNGDLDEVKDYVAK-----GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-GA 64

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGR 146
            D+   +K   T +  AV    V  VK  + KG             DG+       +   
Sbjct: 65  -DINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-----GPDGLTAFEATDNQAI 118

Query: 147 TEVVE 151
             +++
Sbjct: 119 KALLQ 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.9 bits (131), Expect = 3e-09
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM- 120
           +  G T LH AA+    + VKKLL +  A D+  ++K G T +  A  +   E+VK  + 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSK-GA-DVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63

Query: 121 KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           KG   N         DG  P   A   G  E+V+ L
Sbjct: 64  KGADVNAR-----SKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ AA NG     K +  K     G ++   +  G T LH+AA+    + VK LL +  A
Sbjct: 13  LHNAAKNGHAEEVKKLLSK-----GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-GA 66

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK 117
            D+  ++K G T    A  +   E+VK
Sbjct: 67  -DVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ AA NG   + K +  K     G ++   +  G T  H+A +    + VK L  +  A
Sbjct: 46  LHLAAKNGHAEIVKLLLAK-----GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK-GA 99

Query: 91  EDLAKQNKIGCTAVFY 106
            D+  ++        +
Sbjct: 100 -DVNARSWGSSHHHHH 114

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 27/126 (21%), Positives = 41/126 (32%), Gaps = 18/126 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEIT--NHGKTALHVAAEANRIDFVKKLLKRMSAE 91
           L  AA  G     + +        G   T    G + LH+AA+       + LL+     
Sbjct: 6   LLEAARAGQDDEVRILMAN-----GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRA-GV- 58

Query: 92  DLAKQNKIGCTAVFYAVASESVELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGRT 147
               + K+  T +  A +     +V+     G   N       D   M  +  A      
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-----DMLKMTALHWATEHNHQ 113

Query: 148 EVVEFL 153
           EVVE L
Sbjct: 114 EVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 54.3 bits (132), Expect = 6e-09
 Identities = 25/133 (18%), Positives = 47/133 (35%), Gaps = 31/133 (23%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ AA  G ++  +           +         T   +T LH+AA     + V+ LLK
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDAR---------TKVDRTPLHMAASEGHANIVEVLLK 88

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVR 140
              A D+  ++ +  TA+ +A      E+V+      A +  +                 
Sbjct: 89  H-GA-DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV--HTQ-----SKFCKTAFDI 139

Query: 141 AASLGRTEVVEFL 153
           +   G  ++ E L
Sbjct: 140 SIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 30/172 (17%), Positives = 49/172 (28%), Gaps = 54/172 (31%)

Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TMKG- 122
               L  AA A + D V+ L+    A      + +G + +  A         +     G 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMAN-GA-PFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 123 --NEGIATLPDNDGMLPIVRAASLGRTEVVEFL------------YRET-------KNSL 161
             +             P+  AAS G   +VE L             + T        N  
Sbjct: 59  SRDAR-----TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ 113

Query: 162 KDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLARKN 211
              + +EL   LI+ G               A    ++K  +TA  +     
Sbjct: 114 ---EVVEL---LIKYG---------------ADVHTQSKFCKTAFDISIDNG 144

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.1 bits (129), Expect = 4e-09
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 11/94 (11%)

Query: 64  HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KG 122
           +G+T LH+AA    ++ VK LL+   A D+  ++K G T +  A  +  +E+VK  +  G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA-GA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 123 ---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
              N       D +G  P+  AA  G  EVV+ L
Sbjct: 59  ADVNAK-----DKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.6 bits (112), Expect = 7e-07
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ AA NG   V K        E G ++     +G+T LH+AA    ++ VK LL+   A
Sbjct: 6   LHLAARNGHLEVVK-----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GA 59

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK 117
            D+  ++K G T +  A  +  +E+VK
Sbjct: 60  -DVNAKDKNGRTPLHLAARNGHLEVVK 85

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 54.3 bits (132), Expect = 4e-09
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 31/134 (23%)

Query: 33  KLYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLL 85
           KL  AA  G     +       D+  K           +G T L++A     ++ V+ LL
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAK---------DEYGLTPLYLATAHGHLEIVEVLL 67

Query: 86  KRMSAEDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIV 139
           K   A D+   + IG T +  A     +E+ +      A +  N       D  G     
Sbjct: 68  KN-GA-DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADV--NAQ-----DKFGKTAFD 118

Query: 140 RAASLGRTEVVEFL 153
            +   G  ++ E L
Sbjct: 119 ISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 15/104 (14%)

Query: 58  GVEITNH----GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESV 113
           G    +H        L  AA A + D V+ L+    A D+  +++ G T ++ A A   +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN-GA-DVNAKDEYGLTPLYLATAHGHL 60

Query: 114 ELVKA-TMKG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           E+V+     G   N       D  G  P+  AA +G  E+ E L
Sbjct: 61  EIVEVLLKNGADVNAV-----DAIGFTPLHLAAFIGHLEIAEVL 99

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.6 bits (127), Expect = 8e-09
 Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 37  AALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ 96
            + +     +  +  +     G  + +     L  AA A + D V+ L+    A D+A +
Sbjct: 1   GSSHHHHHHSSGLVPR-----GSHMGSDLGKKLLEAARAGQDDEVRILMAN-GA-DVAAK 53

Query: 97  NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
           +K G T +  A  +  +E+VK  ++    +    D  G      +   G  ++ E L
Sbjct: 54  DKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 14/100 (14%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK-- 117
                G   +H AA A  +D ++ LL+   A D+  ++  G   +  A     + +V+  
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEF-QA-DVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 118 ----ATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
               A+           ++ G      A   GR EVV  +
Sbjct: 123 VKHTASNV-GHR-----NHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 53.2 bits (129), Expect = 2e-08
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 61  ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120
           +       L  AA    ++ +  LL+  +  ++  QN  G TA+       + E+ +  +
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQN-NV-NVNAQNGFGRTALQVM-KLGNPEIARRLL 57

Query: 121 -KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
            +G   +       D  G   I  AA  G  + ++ L
Sbjct: 58  LRGANPDLK-----DRTGFAVIHDAARAGFLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.5 bits (122), Expect = 1e-07
 Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 20/127 (15%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L  AA  GD      +         V +      G+TAL V       +  ++LL R  A
Sbjct: 9   LASAAARGDLEQLTSLLQN-----NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR-GA 61

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGR 146
            +   +++ G   +  A  +  ++ ++  +      N       DN+G LP+  AA  G 
Sbjct: 62  -NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-----DNEGNLPLHLAAKEGH 115

Query: 147 TEVVEFL 153
             VVEFL
Sbjct: 116 LRVVEFL 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-K 121
           + G+T LH+A+    I  V+ LL+   + D   ++  G T +  A     +++V+  +  
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQN-GS-DPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 122 G---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
               N             P+  AA  G  ++V+ L
Sbjct: 66  KALVNT-----TGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 23/129 (17%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ A++ GD    + +        G +     + G T LH A     +  V+ LL+   A
Sbjct: 14  LHIASIKGDIPSVEYLLQN-----GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-KA 67

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVRAASL 144
             +        + +  A  +  V++VK      A+   N       +  G+ P+      
Sbjct: 68  -LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASR--NAV-----NIFGLRPVDYTDDE 119

Query: 145 GRTEVVEFL 153
               ++   
Sbjct: 120 SMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 45.1 bits (108), Expect = 7e-06
 Identities = 20/96 (20%), Positives = 28/96 (29%), Gaps = 18/96 (18%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L+ A  +G   V +        +                 + LH AA+   +D VK LL 
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTT---------GYQNDSPLHDAAKNGHVDIVKLLLS 97

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
              A      N  G   V Y        L+    K 
Sbjct: 98  Y-GA-SRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.9 bits (131), Expect = 1e-08
 Identities = 27/133 (20%), Positives = 44/133 (33%), Gaps = 31/133 (23%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L  A  N    +A+       ++  K            GKT L  +      +    LL+
Sbjct: 72  LIWAVKNNRLGIAEKLLSKGSNVNTK---------DFSGKTPLMWSIIFGYSEMSYFLLE 122

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVR 140
              A ++  +N  G T +  A      E+VK      A +  +       D  G+     
Sbjct: 123 H-GA-NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI--SAR-----DLTGLTAEAS 173

Query: 141 AASLGRTEVVEFL 153
           A   GR EV++  
Sbjct: 174 ARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.8 bits (128), Expect = 4e-08
 Identities = 32/186 (17%), Positives = 66/186 (35%), Gaps = 53/186 (28%)

Query: 37  AALNGDWAVAKDIYDKYEGEIGVEIT-----NHGKTALHVAAEANRIDFVKKLLKRMSAE 91
           + ++ +  + + I D+      ++       ++ +T L VA      + + KL++     
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFD-- 59

Query: 92  DLAKQNKIGCTAVFYAVASESVELVKATM-KG---NEGIATLPDNDGMLPIVRAASLGRT 147
            L  ++  G TA+ +AV +  + + +  + KG   N       D  G  P++ +   G +
Sbjct: 60  KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-----DFSGKTPLMWSIIFGYS 114

Query: 148 EVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALH 205
           E+  FL                    +E G               A    +N   ET L 
Sbjct: 115 EMSYFL--------------------LEHG---------------ANVNDRNLEGETPLI 139

Query: 206 VLARKN 211
           V ++  
Sbjct: 140 VASKYG 145

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 52.0 bits (126), Expect = 6e-08
 Identities = 34/193 (17%), Positives = 63/193 (32%), Gaps = 68/193 (35%)

Query: 34  LYRAALNGDWAVAK-------DIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLK 86
           L  A + G              + DK            G TAL  A + NR+   +KLL 
Sbjct: 39  LMVACMLGMENAIDKLVENFDKLEDK---------DIEGSTALIWAVKNNRLGIAEKLLS 89

Query: 87  RMSAEDLAKQNKIGCTAVFYAVASESVELVK------ATMKGNEGIATLPDNDGMLPIVR 140
           +  + ++  ++  G T + +++     E+        A +  N+      + +G  P++ 
Sbjct: 90  K-GS-NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV--NDR-----NLEGETPLIV 140

Query: 141 AASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK 200
           A+  GR+E+V+ L                    +E G               A   A++ 
Sbjct: 141 ASKYGRSEIVKKL--------------------LELG---------------ADISARDL 165

Query: 201 --ETALHVLARKN 211
              TA        
Sbjct: 166 TGLTAEASARIFG 178

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 12/100 (12%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 58  GVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117
           G  +  +G+    +  E +    +  L           ++    T +  A        + 
Sbjct: 1   GSHMDKNGEIVEKIKDEKSINQNLDFLRN--------YRDSYNRTPLMVACMLGMENAID 52

Query: 118 ATM-KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
             +       +      D +G   ++ A    R  + E L
Sbjct: 53  KLVENFDKLEDK-----DIEGSTALIWAVKNNRLGIAEKL 87

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 44/295 (14%), Positives = 82/295 (27%), Gaps = 77/295 (26%)

Query: 34  LYRAALNGDWAVAKDI--YDKYEGEIGVEI----TNHGKTALHVA---AEANRIDFVKKL 84
           ++ A    +    + +  + +   +   +        GKT L  A       + D +  L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 85  L---------KRMSAEDLAKQNKIGCTAVFYAVASESVELVK----------ATMKGN-- 123
           L         K+            G TA+  A+   ++ LV           A   G+  
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 124 -EGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVA 182
            +         G LP+  AA   +  +V+F                    L++       
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVKF--------------------LLQNSWQP-- 174

Query: 183 LQLLHDHRYLATKRAKNKE--TALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE 240
                     A   A++    T LH L        D   K   ++   +      L    
Sbjct: 175 ----------ADISARDSVGNTVLHALVEVADNTVDN-TKFVTSMYNEILILGAKLHPTL 223

Query: 241 IWELIEQPREL--IHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKN 293
             E I   + L  +  AA  G +  L+ +++          +       H A  +
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQR---------EIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 43/262 (16%), Positives = 78/262 (29%), Gaps = 50/262 (19%)

Query: 130 PDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDH 189
           P       I  A +    + +E L    + S K     E                     
Sbjct: 9   PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE--------------------- 47

Query: 190 RYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVE--SLWEEVILLSKQEIWELIEQ 247
                K  +  +T L       L   + +N     L++     + +         +   +
Sbjct: 48  ----FKDPETGKTCLLKAM---LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYK 100

Query: 248 PRELIHDAADRGNVQFLSILIR------------EYPDLMWKADKKDNYTIFHIAVKNRL 295
            +  +H A +R N+  +++L+              +     +           +A     
Sbjct: 101 GQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQ 160

Query: 296 EDLFKF-IYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFK 354
             + KF + +    AD  +   D  GN +LH   E+A        +     M  E+L   
Sbjct: 161 LAIVKFLLQNSWQPAD--ISARDSVGNTVLHALVEVA--DNTVDNTKFVTSMYNEIL--I 214

Query: 355 AVKDVVP-PKLRDAKNNKGLTP 375
               + P  KL +  N KGLTP
Sbjct: 215 LGAKLHPTLKLEEITNRKGLTP 236

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 36/124 (29%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK----- 117
                 L  AA   +++ V++LL+   A D    N+ G   +       S ++ +     
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEA-GA-DPNALNRFGRRPIQVM-MMGSAQVAELLLLH 66

Query: 118 ------------------ATMKGNEGIATL----------PDNDGMLPIVRAASLGRTEV 149
                             A  +G      +           D  G LP+  A   G  ++
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDI 126

Query: 150 VEFL 153
             +L
Sbjct: 127 ARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 22/125 (17%), Positives = 35/125 (28%), Gaps = 36/125 (28%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK---- 117
                  L  AA   R++ V+ LL+   A +    N  G   +       S  + +    
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEA-GA-NPNAPNSYGRRPIQVM-MMGSARVAELLLL 65

Query: 118 -------------------ATMKGNEGIATL----------PDNDGMLPIVRAASLGRTE 148
                              A  +G      +           D  G LP+  A  LG  +
Sbjct: 66  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125

Query: 149 VVEFL 153
           V  +L
Sbjct: 126 VARYL 130

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 25/192 (13%), Positives = 54/192 (28%), Gaps = 32/192 (16%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA---SESVELVKAT 119
            HG T LH       ++ VK L+K   + +    + +G + +  AV    +      +A 
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKH-GS-NRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTE------------VVEFLYRE--TKNSLKDDD 165
           +        L D+     +                      ++ ++ ++         ++
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE 246

Query: 166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK--ETALHVLARKN----------LG 213
                         ++   L           A++   +T L++ AR             G
Sbjct: 247 KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYG 306

Query: 214 -DKDRKNKEAET 224
            D    NK    
Sbjct: 307 ADPFIANKSGLR 318

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 39/335 (11%), Positives = 88/335 (26%), Gaps = 54/335 (16%)

Query: 2   SESTSLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEI 61
           S    + K L      ++++++  E       L R        +   + +          
Sbjct: 40  SSPLKIMKALPSPVVNDNEQKMKLEAF-----LQRLLFPEIQEMPTSLNND--SSNRNSE 92

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA-TM 120
                      +  + +  V               ++ G T + +  +  ++ELVK    
Sbjct: 93  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 152

Query: 121 KG---NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG 177
            G     G     DN G   +V+A                 N+        LL  L    
Sbjct: 153 HGSNRLYG-----DNMGESCLVKAVKSV-------------NNYDSGTFEALLDYLYPCL 194

Query: 178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS 237
                                   T LH +   +       +  A+  ++ L   ++   
Sbjct: 195 ----------------ILEDSMNRTILHHIIITSG--MTGCSAAAKYYLDILMGWIV-KK 235

Query: 238 KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY--TIFHIAVKNRL 295
           +    +     +E   +  +      +   +     +    + +D+   T  +IA +   
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 296 EDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGEL 330
             +   + D    AD      ++ G   +     L
Sbjct: 296 ISIVDALLDYG--AD--PFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 47/328 (14%), Positives = 89/328 (27%), Gaps = 78/328 (23%)

Query: 60  EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
           E     +  L        I  +   L   S+   ++           +  S   E+  A 
Sbjct: 58  EQKMKLEAFLQRLLFPE-IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 116

Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY 179
                 +    D  G  P+    S+   E+V+ L                    ++ G  
Sbjct: 117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHL--------------------VKHG-- 154

Query: 180 AVALQLLHDHRYLATKRAKNK--ETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS 237
                        + +   +   E+ L    +         +   E L++ L+  +IL  
Sbjct: 155 -------------SNRLYGDNMGESCLVKAVKSVNN---YDSGTFEALLDYLYPCLILED 198

Query: 238 KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWK----------ADKKDNYTIF 287
                      R ++H       +   S   + Y D++                +     
Sbjct: 199 SMN--------RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250

Query: 288 HIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQ 347
                   +D      D+K I   M++  D  G+  L++A   A    +++V        
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA---ARLGNISIV-------- 299

Query: 348 RELLWFKAVKDVVPPKLRDAKNNKGLTP 375
             LL + A  D          N  GL P
Sbjct: 300 DALLDYGA--DP------FIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEIT-NHGKTALHVAAEANRIDFVKKLLKRMSAED 92
                     ++ +++  K+     +    ++G T L++AA    I  V  LL    A D
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GA-D 308

Query: 93  LAKQNKIGCTAVFYAVASE 111
               NK G   V +    E
Sbjct: 309 PFIANKSGLRPVDFGAGLE 327

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 20/134 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVK-----KLL 85
           L        + ++  + +K     G +I   T  G T      +    D        K+ 
Sbjct: 46  LRNNNDEARYKISMFLINK-----GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

Query: 86  KRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA------TLPDNDGMLPIV 139
               A D+    K     VF  + +  V+  +         +       + D  G+  + 
Sbjct: 101 LEKGA-DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159

Query: 140 RAASLGRTEVVEFL 153
                 +   ++ +
Sbjct: 160 FVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 5/59 (8%)

Query: 34  LYRAALNGDWAVAK--DIYDKYEGEIGVEIT---NHGKTALHVAAEANRIDFVKKLLKR 87
           +++   N      +   +Y     + G+++      G TAL       +   +K +   
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 26/135 (19%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI------TNHGKTALHVAAEANRIDFVKKLLKR 87
           +  AA+ G +    ++++K     G E       +N     L    +  R      L+ +
Sbjct: 10  VSAAAMLGTYEDFLELFEK-----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 88  MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATL---------PDNDGMLPI 138
            +  D+  + K G T  F        ++   T    E                    + +
Sbjct: 65  GA--DIKSRTKEGTTLFFPLFQGGGNDITGTT----ELCKIFLEKGADITALYKPYKIVV 118

Query: 139 VRAASLGRTEVVEFL 153
            +       +  E +
Sbjct: 119 FKNIFNYFVDENEMI 133

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 2/108 (1%)

Query: 62  TNHGKTALHVAAE-ANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120
               +TALH+A    +R           ++ +L KQ   G TA+ Y   +++ E +K  +
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIE 168
           +  +    + +  G  P+  A  L      E L +           +E
Sbjct: 226 R-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVE 272

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 32  LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE 91
           L L   +++       D   +  G +  + T  G TALH     +  + +K LL+  +  
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQ-TGKGSTALHYCCLTDNAECLKLLLRGKA-- 229

Query: 92  DLAKQNKIGCTAVFYAVASESVELV 116
            +   N+ G T +  A   +     
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCE 254

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVE----LVK 117
            + G+  LH A            LKR +  DL  ++  G   +  A+ + + +    L  
Sbjct: 265 DSAGRGPLHHATILGHTGLACLFLKRGA--DLGARDSEGRDPLTIAMETANADIVTLLRL 322

Query: 118 ATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNS 160
           A M+  E       ++  L I R  SL  ++  E L R + + 
Sbjct: 323 AKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDL 365

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELV 116
              G TALH AA  N+ D +K LLK  +   +   N+ G TA+  A      E  
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLLKGRA--LVGTVNEAGETALDIARKKHHKECE 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	593
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.88
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.81
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.8
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.71
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
3gvo_A	351	Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom	82.09
3k49_A	369	MRNA-binding protein PUF3; PUF3, pumilio, RNA bind	81.17

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.1e-49  Score=416.98  Aligned_cols=330  Identities=20%  Similarity=0.216  Sum_probs=182.9

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      ..|..|.||||.|+..|+.+++++|++. +.+++.+ +..|.||||+|+..|+.++|++|+++  +++++.+|..|.|||
T Consensus        42 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L  117 (437)
T 1n11_A           42 VSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPL  117 (437)
T ss_dssp             CSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHH
Confidence            3344455555555555555555555554 4444444 44555555555555555555555555  455555555555555


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      |+|+..|+.++++.|++++++. ...+..|.||||+|+..|+.+++++|++++. .+..+..|.||||.|+..++.++++
T Consensus       118 ~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  196 (437)
T 1n11_A          118 HIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  196 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            5555555555555555555443 3444455555555555555555555555554 4444555555555555555555555


Q ss_pred             HHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHH
Q 007677          184 QLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQF  263 (593)
Q Consensus       184 ~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~  263 (593)
                      .|+++ +...+..+.+|.||||+|+..++          .++++.|++.|.+++..+     ..|.||||+|+..|+.++
T Consensus       197 ~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~----------~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~g~~~~  260 (437)
T 1n11_A          197 LLLPR-GGSPHSPAWNGYTPLHIAAKQNQ----------VEVARSLLQYGGSANAES-----VQGVTPLHLAAQEGHAEM  260 (437)
T ss_dssp             HHGGG-TCCSCCCCTTCCCHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHTTCHHH
T ss_pred             HHHhC-CCCCCCcCCCCCCHHHHHHHcCC----------HHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHHCCCHHH
Confidence            55554 23333444455555555555555          566666666655544332     456667777777677777


Q ss_pred             HHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccccc---
Q 007677          264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS---  340 (593)
Q Consensus       264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~---  340 (593)
                      +++|+++++++ +..|.. |+||||+|++.|+.+++++|+++|.+    ++.+|..|+||||+|+..|+.++++.|-   
T Consensus       261 v~~Ll~~~~~~-~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  334 (437)
T 1n11_A          261 VALLLSKQANG-NLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ  334 (437)
T ss_dssp             HHHHHTTTCCT-TCCCTT-CCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred             HHHHHhcCCCC-CCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC
Confidence            77776666666 566666 66777777777777777777666665    5666677777777777766666555431   


Q ss_pred             ----------CchHhhHHHHHHHHHhhhhc-CcccccccCCCCCcchhhhhH
Q 007677          341 ----------GSALQMQRELLWFKAVKDVV-PPKLRDAKNNKGLTPKALFSK  381 (593)
Q Consensus       341 ----------~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~  381 (593)
                                .++++.+......+.++.++ .+++++.+|.+|+||+++|.+
T Consensus       335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~  386 (437)
T 1n11_A          335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR  386 (437)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence                      12233333323333344333 456666666666666666654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.3e-49  Score=416.29  Aligned_cols=332  Identities=20%  Similarity=0.168  Sum_probs=291.3

Q ss_pred             CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      +..+..|+||||.||..|+.++|++|+++ +.+++.+ +..|.||||+|+..|+.++|++|+++  +++++.+|..|.||
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~   83 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTP   83 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCH
Confidence            36688999999999999999999999997 7888877 88999999999999999999999999  89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      ||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+. ....+..|.||||.|+..|+.+++
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v  162 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA  162 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999996 8899999999999999999999999999988 677888999999999999999999


Q ss_pred             HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677          183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ  262 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  262 (593)
                      +.|+++ +...+..+.+|.||||+|+..++          .+++++|++.+.+++..+     ..|.||||+|+..|+.+
T Consensus       163 ~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          163 ELLLER-DAHPNAAGKNGLTPLHVAVHHNN----------LDIVKLLLPRGGSPHSPA-----WNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             HHHHHT-TCCTTCCCSSCCCHHHHHHHTTC----------HHHHHHHGGGTCCSCCCC-----TTCCCHHHHHHHTTCHH
T ss_pred             HHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----------HHHHHHHHhCCCCCCCcC-----CCCCCHHHHHHHcCCHH
Confidence            999998 66678889999999999999999          899999999988776544     67899999999999999


Q ss_pred             HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccccc--
Q 007677          263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS--  340 (593)
Q Consensus       263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~--  340 (593)
                      ++++|+++++++ +..|.. |+||||+|+..|+.+++++|++.+++    ++.+|..|+||||+|++.++.++++.|.  
T Consensus       227 ~~~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  300 (437)
T 1n11_A          227 VARSLLQYGGSA-NAESVQ-GVTPLHLAAQEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKH  300 (437)
T ss_dssp             HHHHHHHTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCC-CCCCCC-CCCHHHHHHHCCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            999999999998 788888 99999999999999999999999988    7889999999999999999987766541  


Q ss_pred             -----------CchHhhHHHHHHHHHhhhhc-CcccccccCCCCCcchhhhhHH
Q 007677          341 -----------GSALQMQRELLWFKAVKDVV-PPKLRDAKNNKGLTPKALFSKE  382 (593)
Q Consensus       341 -----------~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~~  382 (593)
                                 .+++..+......+.++.++ .+++++.+|..|.||+|+|.+.
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~  354 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ  354 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence                       23444444444445555555 5677788888888888887653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.2e-43  Score=360.56  Aligned_cols=291  Identities=19%  Similarity=0.238  Sum_probs=258.8

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT  102 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  102 (593)
                      ..+.+.+|.|+||.|+++|+.++|+.|++. |++++.+.+..|.||||+|+..|+.++|++|+++  |++++.++..+.+
T Consensus        18 ~~~~~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~   94 (337)
T 4g8k_A           18 GRRAAVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGAT   94 (337)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCC
T ss_pred             CCCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCc
Confidence            345677899999999999999999999997 8999987455699999999999999999999999  8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccc----------CCcchhHHHH
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSL----------KDDDCIELLV  171 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~----------~~~~g~t~L~  171 (593)
                      |++.++..++.+++..+++.++++ +.+|..|.||||+|+..|+.+++++|+++++ .+.          .+..|.||||
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A           95 PFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             hhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence            999999999999999999999997 8899999999999999999999999999987 332          3566899999


Q ss_pred             HHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhH
Q 007677          172 QLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPREL  251 (593)
Q Consensus       172 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tp  251 (593)
                      .|+..|+.++++.|+++.+.+++.+|..|.|++|.++..+.      ......+++.|++.|++++..+     ..|.||
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~------~~~~~~i~~lLl~~gad~n~~d-----~~g~t~  242 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD------DSDVEAITHLLLDHGADVNVRG-----ERGKTP  242 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC------TTTHHHHHHHHHHTTCCTTCCC-----GGGCCH
T ss_pred             HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC------cccHHHHHHHHHHCCCCCCCcC-----CCCCCH
Confidence            99999999999999998888999999999999998887654      1223568899999999887654     789999


Q ss_pred             HHHHHHcCcHHHHHHHHHH-CCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhh
Q 007677          252 IHDAADRGNVQFLSILIRE-YPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGEL  330 (593)
Q Consensus       252 Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~  330 (593)
                      ||+|+..|+.++++.|++. +.++ +.+|.. |+||||+|+++|+.+++++|+++|++    +|.     .||||+|++.
T Consensus       243 L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n~-----~~~L~~A~~~  311 (337)
T 4g8k_A          243 LILAVEKKHLGLVQRLLEQEHIEI-NDTDSD-GKTALLLAVELKLKKIAELLCKRGAS----TDC-----GDLVMTARRN  311 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHTSTTCCT-TCBCTT-SCBHHHHHHHTTCHHHHHHHHTTSCS----STT-----CCHHHHHHHT
T ss_pred             HHHHHHhhhhHHHHHHHHhcCCcc-cCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC----CCC-----CCHHHHHHHc
Confidence            9999999999999999986 5676 899999 99999999999999999999999988    443     4699999999


Q ss_pred             CCCcccccc
Q 007677          331 APQHRLNVV  339 (593)
Q Consensus       331 ~~~~~~~~l  339 (593)
                      ++.+++++|
T Consensus       312 ~~~~iv~~L  320 (337)
T 4g8k_A          312 YDHSLVKVL  320 (337)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHH
Confidence            997766554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.6e-43  Score=362.85  Aligned_cols=305  Identities=18%  Similarity=0.154  Sum_probs=222.2

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF  105 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh  105 (593)
                      .+..+.++||.||..|+.+.++.++.+.+.+++.+ |..|.||||+|+..|+.++|++|+++  +++++.+|..|.||||
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~   96 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLH   96 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHH
Confidence            46778899999999999999999999888888887 89999999999999999999999999  8999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHH
Q 007677          106 YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQ  184 (593)
Q Consensus       106 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~  184 (593)
                      +|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++ .+..+..|.++++.++..+..+.+..
T Consensus        97 ~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~  175 (351)
T 3utm_A           97 NACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY  175 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHh
Confidence            999999999999999999997 7889999999999999999999999999998 78888899999888766555444443


Q ss_pred             HHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHc---CcH
Q 007677          185 LLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADR---GNV  261 (593)
Q Consensus       185 Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~  261 (593)
                      ....             .++..++..+.          .+.+..++........     .+..|.||||.|+..   ++.
T Consensus       176 ~~~~-------------~~~~~~~~~~~----------~~~~~~~l~~~~~~~~-----~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          176 EFKG-------------HSLLQAAREAD----------LAKVKKTLALEIINFK-----QPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             HHHH-------------HHHHHHHHTTC----------HHHHHHHTTTCCTTCC-----CTTTCCCHHHHHHHCCSTTHH
T ss_pred             hhcc-------------cHHHHHHHhcc----------HHHHHHHHHhhccccc-----CCCCCCCHHHHHHHHhCccHH
Confidence            3321             23344444444          3333333322211111     124456666666666   445


Q ss_pred             HHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccC
Q 007677          262 QFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSG  341 (593)
Q Consensus       262 ~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~  341 (593)
                      +++++|+++++++ +.+|.. |+||||+|+.+|+.+++++|+++|++    +|.+|..|+||||+|++.++.++++.|  
T Consensus       228 ~~~~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~~~v~~L--  299 (351)
T 3utm_A          228 QVAELLLRKGANV-NEKNKD-FMTPLHVAAERAHNDVMEVLHKHGAK----MNALDSLGQTALHRAALAGHLQTCRLL--  299 (351)
T ss_dssp             HHHHHHHHTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH--
T ss_pred             HHHHHHHHcCCCc-CCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHH--
Confidence            6666666666665 556666 66666666666666666666666665    556666666666666666665443332  


Q ss_pred             chHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhHHHHHHH
Q 007677          342 SALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELK  387 (593)
Q Consensus       342 ~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~~~~  387 (593)
                                       +-.+++++.+|.+|+||++++.+...+++
T Consensus       300 -----------------l~~gad~~~~~~~g~tal~~a~~~~~~~l  328 (351)
T 3utm_A          300 -----------------LSYGSDPSIISLQGFTAAQMGNEAVQQIL  328 (351)
T ss_dssp             -----------------HHTTCCTTCCCTTSCCHHHHSCHHHHHHH
T ss_pred             -----------------HHcCCCCCCcCCCCCChhhhhhHHHHHHH
Confidence                             11455666666666666666655444433

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-42  Score=343.68  Aligned_cols=270  Identities=20%  Similarity=0.268  Sum_probs=247.2

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +.+|.||||.|+..|+.+.+++|+++ +.+++...+..|.||||+|+..|+.+++++|+++  +++++.+|..|.||||+
T Consensus         2 ~~~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   78 (285)
T 1wdy_A            2 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLL   78 (285)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence            34688999999999999999999997 6778776678899999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccC----------CcchhHHHHHHHH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLK----------DDDCIELLVQLIE  175 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~----------~~~g~t~L~~A~~  175 (593)
                      |+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++++. .+..          +..|.||||.|+.
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T 1wdy_A           79 AAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence            99999999999999999997 7889999999999999999999999999988 4444          7789999999999


Q ss_pred             cCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHH
Q 007677          176 TGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDA  255 (593)
Q Consensus       176 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~A  255 (593)
                      .|+.++++.|++..+..++.+|..|.||||+|+..++      .....++++.|++.|++++..+     ..|.||||+|
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~i~~~Ll~~g~~~~~~~-----~~g~t~L~~A  226 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD------DSDVEAITHLLLDHGADVNVRG-----ERGKTPLILA  226 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC------TTTHHHHHHHHHHTTCCSSCCC-----TTSCCHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc------cchHHHHHHHHHHcCCCCCCcC-----CCCCcHHHHH
Confidence            9999999999998788889999999999999999876      2234689999999998887654     7899999999


Q ss_pred             HHcCcHHHHHHHHH-HCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcccccccccc
Q 007677          256 ADRGNVQFLSILIR-EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTD  317 (593)
Q Consensus       256 a~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D  317 (593)
                      ++.|+.+++++|++ .+.++ +.+|.. |+||||+|+++|+.+++++|+++|++    ++.+|
T Consensus       227 ~~~~~~~~v~~Ll~~~g~~~-~~~~~~-g~t~l~~A~~~~~~~i~~~Ll~~Ga~----~~~~d  283 (285)
T 1wdy_A          227 VEKKHLGLVQRLLEQEHIEI-NDTDSD-GKTALLLAVELKLKKIAELLCKRGAS----TDCGD  283 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSS
T ss_pred             HHcCCHHHHHHHHhccCCCc-cccCCC-CCcHHHHHHHcCcHHHHHHHHHcCCC----CCccc
Confidence            99999999999999 77887 889999 99999999999999999999999998    66666

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-40  Score=328.98  Aligned_cols=251  Identities=18%  Similarity=0.184  Sum_probs=230.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch-hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ-NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  142 (593)
                      +|+||||.|++.|+.++|++|++.  +.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            578999999999999999999999  7888887 888999999999999999999999999996 788999999999999


Q ss_pred             HcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhcc----------ccCCccHHHHHHhcC
Q 007677          143 SLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKR----------AKNKETALHVLARKN  211 (593)
Q Consensus       143 ~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------d~~g~t~Lh~a~~~~  211 (593)
                      ..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++.. ...+.+          +..|.||||+|+..+
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            9999999999999998 7888999999999999999999999999984 333433          788999999999999


Q ss_pred             CCcccccchhHHHHHHHHHHH-HHhcChHHHHHHhhcchhHHHHHHHcCc----HHHHHHHHHHCCCccccccCCCCchH
Q 007677          212 LGDKDRKNKEAETLVESLWEE-VILLSKQEIWELIEQPRELIHDAADRGN----VQFLSILIREYPDLMWKADKKDNYTI  286 (593)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~~g~t~  286 (593)
                      +          .++++.|++. +.+++..+     ..|.||||.|+..|+    .+++++|+++++++ +.+|.. |+||
T Consensus       160 ~----------~~~v~~Ll~~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~-g~t~  222 (285)
T 1wdy_A          160 H----------VEVLKILLDEMGADVNACD-----NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER-GKTP  222 (285)
T ss_dssp             C----------HHHHHHHHHTSCCCTTCCC-----TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTT-SCCH
T ss_pred             C----------HHHHHHHHHhcCCCCCccC-----CCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCC-CCcH
Confidence            9          8999999987 77776554     788999999999999    99999999999998 789999 9999


Q ss_pred             HHHHHHcCchhHHHHHhc-ccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          287 FHIAVKNRLEDLFKFIYD-IKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       287 Lh~Av~~~~~~iv~~Ll~-~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      ||+|+++|+.+++++|++ .|.+    ++.+|..|+||||+|++.++.++++.|
T Consensus       223 L~~A~~~~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~L  272 (285)
T 1wdy_A          223 LILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELL  272 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            999999999999999999 7887    889999999999999999987665544

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.9e-40  Score=326.28  Aligned_cols=254  Identities=11%  Similarity=0.044  Sum_probs=157.7

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCcc----------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEG----------EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ   96 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~----------~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~   96 (593)
                      ...|.|+||.|+..|+.+.+..++...+.          .++.+ |..|.||||+|+..|+.++|++|++.  +++++.+
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~   88 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII   88 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence            56789999999999998888876654322          23333 88999999999999999999999998  8999999


Q ss_pred             hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHc
Q 007677           97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIET  176 (593)
Q Consensus        97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~  176 (593)
                      |..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++....+..|.||||.|+..
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~  167 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR  167 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHc
Confidence            999999999999999999999999999997 8899999999999999999999999999987222334467777777777


Q ss_pred             CCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHH
Q 007677          177 GLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAA  256 (593)
Q Consensus       177 ~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa  256 (593)
                      |+.++++.|++. +..++.+|.+|.||||+|+..++          .++++.|++.|++++.      +..|.||||+|+
T Consensus       168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~----------~~~v~~Ll~~ga~~~~------~~~g~t~L~~A~  230 (285)
T 3d9h_A          168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQ----------RACVKKLLESGADVNQ------GKGQDSPLHAVV  230 (285)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTC----------HHHHHHHHHTTCCTTC------CBTTBCHHHHHH
T ss_pred             CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc----------HHHHHHHHHCCCCCCC------CCCCCCHHHHHH
Confidence            777777777765 34445555555555555555554          4445555444444431      234445555555


Q ss_pred             HcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677          257 DRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI  305 (593)
Q Consensus       257 ~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~  305 (593)
                      ..|+.+++++|+++|+++ +.+|.. |+||||+|+  ++.+++++|+++
T Consensus       231 ~~~~~~~v~~Ll~~gad~-~~~d~~-g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          231 RTASEELACLLMDFGADT-QAKNAE-GKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTT-SCCGGGGSC--TTSHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CCcCCC-CCCHHHHhc--CccHHHHHHHHh
Confidence            555555555555544444 444444 555555544  233444444444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.4e-39  Score=328.57  Aligned_cols=272  Identities=16%  Similarity=0.132  Sum_probs=245.6

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT  102 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  102 (593)
                      .+.+|..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|+++  +++++.+|..|.|
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t  126 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFT  126 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCC
Confidence            346789999999999999999999999987 8889887 89999999999999999999999999  8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHH
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      |||+|+..|+.+++++|+++|++. ...+..|.||+++|+..+..+.+++...           ..++..++..+..+.+
T Consensus       127 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  194 (351)
T 3utm_A          127 PLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFK-----------GHSLLQAAREADLAKV  194 (351)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHH-----------HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhc-----------ccHHHHHHHhccHHHH
Confidence            999999999999999999999996 8899999999999999888888887664           3467788889999999


Q ss_pred             HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677          183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ  262 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  262 (593)
                      ..++.... .....+..|.||||+|+..++       ....++++.|++.|++++..+     ..|.||||+|++.|+.+
T Consensus       195 ~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~-------~~~~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~g~~~  261 (351)
T 3utm_A          195 KKTLALEI-INFKQPQSHETALHCAVASLH-------PKRKQVAELLLRKGANVNEKN-----KDFMTPLHVAAERAHND  261 (351)
T ss_dssp             HHHTTTCC-TTCCCTTTCCCHHHHHHHCCS-------TTHHHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHTTCHH
T ss_pred             HHHHHhhc-ccccCCCCCCCHHHHHHHHhC-------ccHHHHHHHHHHcCCCcCCcC-----CCCCCHHHHHHHcCCHH
Confidence            99988743 334577889999999999854       233789999999998887654     78999999999999999


Q ss_pred             HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhh
Q 007677          263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE  329 (593)
Q Consensus       263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~  329 (593)
                      ++++|+++|+++ +.+|.. |+||||+|+.+|+.+++++|+++|++    ++.+|..|+||+|+|..
T Consensus       262 ~v~~Ll~~ga~~-n~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~gad----~~~~~~~g~tal~~a~~  322 (351)
T 3utm_A          262 VMEVLHKHGAKM-NALDSL-GQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQMGNE  322 (351)
T ss_dssp             HHHHHHHTTCCT-TCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHSCH
T ss_pred             HHHHHHHCCCCC-CCcCCC-CCCHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCChhhhhhH
Confidence            999999999999 889999 99999999999999999999999998    78999999999999943

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=5.3e-40  Score=340.06  Aligned_cols=259  Identities=19%  Similarity=0.173  Sum_probs=208.7

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHH--------HcCCchhhhch
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLL--------KRMSAEDLAKQ   96 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~   96 (593)
                      .+|..|.||||.|+..|+ ++++.|+.   .+++.+.+..|.||||+|+..|+.++|++|+        +.  +++++.+
T Consensus        89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~  162 (373)
T 2fo1_E           89 EPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAM  162 (373)
T ss_dssp             -----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCC
T ss_pred             CCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCC
Confidence            568889999999999654 67776654   3566663378999999999999999888887        55  8899999


Q ss_pred             hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc---c-cccCCcchhHHHHH
Q 007677           97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET---K-NSLKDDDCIELLVQ  172 (593)
Q Consensus        97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~---~-~~~~~~~g~t~L~~  172 (593)
                      |..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++   . .+..+..|.||||.
T Consensus       163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~  241 (373)
T 2fo1_E          163 DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  241 (373)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence            999999999999999999999999999997 789999999999999999999999999987   3 67789999999999


Q ss_pred             HHHcC---CHHHHHHHHHhcchhhhc--------cccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHH-HhcChHH
Q 007677          173 LIETG---LYAVALQLLHDHRYLATK--------RAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEV-ILLSKQE  240 (593)
Q Consensus       173 A~~~~---~~~~v~~Ll~~~~~~~~~--------~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~  240 (593)
                      |+..+   +.++++.|++.+ ..++.        +|..|.||||+|+..++          .+++++|++.+ .+++..+
T Consensus       242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----------~~~v~~Ll~~~~~~~n~~d  310 (373)
T 2fo1_E          242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSN----------MPIVKYLVGEKGSNKDKQD  310 (373)
T ss_dssp             HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCC----------HHHHHHHHHHSCCCTTCCC
T ss_pred             HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCC----------HHHHHHHHHhcCCCccCcC
Confidence            99998   899999999984 33332        45677888888887777          77777777765 5655443


Q ss_pred             HHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          241 IWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       241 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                           ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.+++++|++++++
T Consensus       311 -----~~g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d~~-g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          311 -----EDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDAT-DHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             -----TTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSS-SCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCCCC-CCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence                 67778888888888888888888877777 677777 78888888888888888888777664

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-40  Score=342.50  Aligned_cols=260  Identities=15%  Similarity=0.168  Sum_probs=225.9

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHcCCHHHHHHHH--------hcCCCCCccCC
Q 007677           61 ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVASESVELVKATM--------KGNEGIATLPD  131 (593)
Q Consensus        61 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~  131 (593)
                      .+..|.||||+|+..|+ +++++|++    .+++.+| ..|+||||+|+..|+.++++.|+        +.|+++ +.+|
T Consensus        90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d  163 (373)
T 2fo1_E           90 PEPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMD  163 (373)
T ss_dssp             ----CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCC
T ss_pred             CCCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Confidence            37889999999999665 78877753    4688888 79999999999999998887776        789997 8899


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcc--hhhhccccCCccHHHHHH
Q 007677          132 NDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHR--YLATKRAKNKETALHVLA  208 (593)
Q Consensus       132 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~a~  208 (593)
                      ..|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++...  ..++..|.+|.||||+|+
T Consensus       164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence            999999999999999999999999998 88889999999999999999999999999743  577788999999999999


Q ss_pred             hcCCCcccccchhHHHHHHHHHHHHHhcChHHH---HHHhhcchhHHHHHHHcCcHHHHHHHHHHC-CCccccccCCCCc
Q 007677          209 RKNLGDKDRKNKEAETLVESLWEEVILLSKQEI---WELIEQPRELIHDAADRGNVQFLSILIREY-PDLMWKADKKDNY  284 (593)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~---~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~~g~  284 (593)
                      ..+.       ....++++.|++.|++++....   ...+..|.||||+|+..|+.+++++|++++ .++ +.+|.. |+
T Consensus       244 ~~~~-------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~-g~  314 (373)
T 2fo1_E          244 HNEG-------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDED-GK  314 (373)
T ss_dssp             HSCS-------TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTT-CC
T ss_pred             HhCC-------cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCC-CC
Confidence            9872       1128999999999988774211   113468899999999999999999999997 666 899999 99


Q ss_pred             hHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          285 TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       285 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      ||||+|+.+|+.+++++|+++|++    ++.+|..|+||||+|+..|+.++++.|
T Consensus       315 TpL~~A~~~g~~~iv~~Ll~~gad----~~~~d~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          315 TPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC----ccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999998    889999999999999999998776654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.2e-39  Score=319.01  Aligned_cols=248  Identities=18%  Similarity=0.103  Sum_probs=152.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchh---hhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAED---LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPI  138 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  138 (593)
                      |.+|+||||+|+..|+.++|++|++.  +.+   ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.|||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL   82 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL   82 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            45555555555555555555555554  333   4555555555555555555555555555555553 44555555555


Q ss_pred             HHHHHcCCHHHHHHHHHhccc--------------ccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHH
Q 007677          139 VRAASLGRTEVVEFLYRETKN--------------SLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETAL  204 (593)
Q Consensus       139 ~~A~~~g~~~iv~~Ll~~~~~--------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~L  204 (593)
                      |+|+..|+.+++++|+++++.              ......+.++++.+...+........+...+..++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  162 (282)
T 1oy3_D           83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (282)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence            555555555555555554430              112234556666666666555555555556777888999999999


Q ss_pred             HHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCc
Q 007677          205 HVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY  284 (593)
Q Consensus       205 h~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~  284 (593)
                      |+|+..++          .++++.|++.|++++..+.    ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+
T Consensus       163 ~~A~~~g~----------~~~v~~Ll~~g~~~~~~~~----~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~-g~  226 (282)
T 1oy3_D          163 HVAVIHKD----------AEMVRLLRDAGADLNKPEP----TCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYG-GR  226 (282)
T ss_dssp             HHHHHTTC----------HHHHHHHHHHTCCTTCCCT----TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-SC
T ss_pred             HHHHHcCC----------HHHHHHHHHcCCCCCCCCC----CCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccC-CC
Confidence            99999999          9999999999998876541    34899999999999999999999999998 889999 99


Q ss_pred             hHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCC
Q 007677          285 TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAP  332 (593)
Q Consensus       285 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~  332 (593)
                      ||||+|+.+|+.+++++|+++|++    ++.+|..|.|||++|.....
T Consensus       227 tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          227 TPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHTTCC----CCCCC---------------
T ss_pred             CHHHHHHHcCCcHHHHHHHHcCCC----cCcCCCcccccccccCCccc
Confidence            999999999999999999999999    88999999999999987654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=317.52  Aligned_cols=244  Identities=13%  Similarity=0.085  Sum_probs=197.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC---------chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMS---------AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDN  132 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~---------~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~  132 (593)
                      ...|.|+||+|+..|+.+.+..++....         ...++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|.
T Consensus        12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~   90 (285)
T 3d9h_A           12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA   90 (285)
T ss_dssp             ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred             chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence            4679999999999999877777655420         1236778999999999999999999999999999996 88999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcC
Q 007677          133 DGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKN  211 (593)
Q Consensus       133 ~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~  211 (593)
                      +|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++.. ...+ .+.+|.||||+|+..+
T Consensus        91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~-~~~~g~t~L~~A~~~g  168 (285)
T 3d9h_A           91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQ-PESDLASPIHEAARRG  168 (285)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSS-CSCTTSCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC-CCCC-CCCCCCCHHHHHHHcC
Confidence            99999999999999999999999998 7888999999999999999999999999984 3333 3456999999999999


Q ss_pred             CCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHH
Q 007677          212 LGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAV  291 (593)
Q Consensus       212 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av  291 (593)
                      +          .++++.|++.|.+++..+     ..|.||||+|+..|+.+++++|+++++++ + .|.. |+||||+|+
T Consensus       169 ~----------~~~v~~Ll~~g~~~~~~d-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~-g~t~L~~A~  230 (285)
T 3d9h_A          169 H----------VECVNSLIAYGGNIDHKI-----SHLGTPLYLACENQQRACVKKLLESGADV-N-QGKG-QDSPLHAVV  230 (285)
T ss_dssp             C----------HHHHHHHHHTTCCTTCCB-----TTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBT-TBCHHHHHH
T ss_pred             C----------HHHHHHHHHCCCCCCCcC-----CCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCC-CCCHHHHHH
Confidence            9          999999999998877654     78899999999999999999999999998 4 4888 999999999


Q ss_pred             HcCchhHHHHHhcccCccccccccccCCCCchhHhhhhh
Q 007677          292 KNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGEL  330 (593)
Q Consensus       292 ~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~  330 (593)
                      ..|+.+++++|++.|++    ++.+|.+|+||||+|+..
T Consensus       231 ~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          231 RTASEELACLLMDFGAD----TQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             HTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGSCTT
T ss_pred             HcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHhcCc
Confidence            99999999999999998    889999999999999943

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.8e-37  Score=316.58  Aligned_cols=273  Identities=17%  Similarity=0.151  Sum_probs=234.4

Q ss_pred             HHHHHhhhhccccCCCccc-cccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677            9 KQLKEDKRKESDEQLPAET-ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR   87 (593)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~-~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~   87 (593)
                      +..+.+...+.+.+  .++ ..|+||||.|+..|+.++|+.|++. +++++.+ +..+.+|+|.++..++.+++..+++.
T Consensus        39 ~~V~~LL~~Gadvn--~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (337)
T 4g8k_A           39 DLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFILAAIAGSVKLLKLFLSK  114 (337)
T ss_dssp             HHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHCCCCCC--ccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhh-ccCCCchhHHHHhcccchhhHHhhhc
Confidence            34455555554443  444 4599999999999999999999986 8888887 89999999999999999999999998


Q ss_pred             CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCC---------ccCCCCCCCHHHHHHHcCCHHHHHHHHHh-c
Q 007677           88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA---------TLPDNDGMLPIVRAASLGRTEVVEFLYRE-T  157 (593)
Q Consensus        88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~  157 (593)
                        +.+++.+|..|.||||+|+..|+.+++++|+++|+++.         ...+..|.||||+|+..|+.+++++|+++ +
T Consensus       115 --~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g  192 (337)
T 4g8k_A          115 --GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  192 (337)
T ss_dssp             --TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred             --cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence              89999999999999999999999999999999998762         23456799999999999999999999975 5


Q ss_pred             c-cccCCcchhHHHHHHHHcCC---H-HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 007677          158 K-NSLKDDDCIELLVQLIETGL---Y-AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE  232 (593)
Q Consensus       158 ~-~~~~~~~g~t~L~~A~~~~~---~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~  232 (593)
                      + .+..+..|.++++.++..+.   . .+++.|++. +.+++.+|.+|+||||+|+..++          .+.++.|++.
T Consensus       193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~----------~~~v~~Ll~~  261 (337)
T 4g8k_A          193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKH----------LGLVQRLLEQ  261 (337)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTC----------HHHHHHHHTS
T ss_pred             CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhh----------hHHHHHHHHh
Confidence            5 78889999999998876544   2 455666665 78889999999999999999999          8899988874


Q ss_pred             -HHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccc
Q 007677          233 -VILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD  310 (593)
Q Consensus       233 -~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~  310 (593)
                       +++++..+     .+|.||||+|++.|+.++|++|+++|+++      + +.+|||+|+++|+.+++++|+++|++.+
T Consensus       262 ~~~~vn~~d-----~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~------n-~~~~L~~A~~~~~~~iv~~Ll~~GA~~d  328 (337)
T 4g8k_A          262 EHIEINDTD-----SDGKTALLLAVELKLKKIAELLCKRGAST------D-CGDLVMTARRNYDHSLVKVLLSHGAKED  328 (337)
T ss_dssp             TTCCTTCBC-----TTSCBHHHHHHHTTCHHHHHHHHTTSCSS------T-TCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred             cCCcccCcC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCC------C-CCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence             66666544     88999999999999999999999999887      2 6789999999999999999999999854

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.1e-39  Score=333.39  Aligned_cols=256  Identities=18%  Similarity=0.082  Sum_probs=161.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      |.+|.||||+|+..|+.++|++|+++  +++++.+|..|.||||+|+..|+.++|++|+++|++.   .+.+|.||||+|
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A   91 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLA   91 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHH
Confidence            34444455555554555555544444  4444444444455555555555555555554444432   122444455555


Q ss_pred             HHcCCHHHHHHHHHh----cc-ccc-----------------CCcchhHHHHHHHHcC--CHHHHHHHHHhcchhhhccc
Q 007677          142 ASLGRTEVVEFLYRE----TK-NSL-----------------KDDDCIELLVQLIETG--LYAVALQLLHDHRYLATKRA  197 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~----~~-~~~-----------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d  197 (593)
                      +..|+.+++++|++.    +. .+.                 .+..|.||||.|+..|  +.++++.|++. +.+++.+|
T Consensus        92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d  170 (364)
T 3ljn_A           92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKD  170 (364)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCC
T ss_pred             HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccC
Confidence            555555555554444    21 111                 3444555555555555  55555555555 44556667


Q ss_pred             cCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCcccc
Q 007677          198 KNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWK  277 (593)
Q Consensus       198 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~  277 (593)
                      ..|.||||+|+..++          .+++++|++.|++....+.+..|..|.||||+|+..|+.+++++|+++|+++ +.
T Consensus       171 ~~g~t~L~~A~~~g~----------~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~  239 (364)
T 3ljn_A          171 KADETPLMRAMEFRN----------REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NM  239 (364)
T ss_dssp             TTSCCHHHHHHHTTC----------HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TC
T ss_pred             CCCCCHHHHHHHcCC----------HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence            777777777777777          7777777777766211111223377899999999999999999999999998 89


Q ss_pred             ccCCCCchHHHHHHHcCchhHHHHHhcccCcccc--------ccccccCCCCchhHhhhhhCCCcc
Q 007677          278 ADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADL--------MVDCTDEKGNNILHLAGELAPQHR  335 (593)
Q Consensus       278 ~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~--------lin~~D~~G~T~LH~A~~~~~~~~  335 (593)
                      +|.. |+||||+|+..|+.+++++|+++|++...        .....|..|+|||+.|+..++.+.
T Consensus       240 ~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~  304 (364)
T 3ljn_A          240 EDNE-HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE  304 (364)
T ss_dssp             CCTT-SCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHH
T ss_pred             CCCC-CCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHH
Confidence            9999 99999999999999999999999876321        012367889999999998886543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-38  Score=311.55  Aligned_cols=226  Identities=19%  Similarity=0.214  Sum_probs=124.0

Q ss_pred             ccccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCchhhh-chhcCCChHHHHHHHcCCHHHHHHHHh
Q 007677           56 EIGVEITNHGKTALHVAAEAN-------------RIDFVKKLLKRMSAEDLA-KQNKIGCTAVFYAVASESVELVKATMK  121 (593)
Q Consensus        56 ~~~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~-~~d~~g~TpLh~A~~~g~~~iv~~Ll~  121 (593)
                      +++.+ |.+|.||||+|+..|             +.+++++|++.  +.+++ ..|..|.||||+|+..|+.+++++|++
T Consensus         2 dvn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   78 (253)
T 1yyh_A            2 DVNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLE   78 (253)
T ss_dssp             -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            45666 788888888888877             77888888877  56654 347778888888888888888888888


Q ss_pred             cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCc
Q 007677          122 GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKE  201 (593)
Q Consensus       122 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~  201 (593)
                      +|+++ +.+|..|.||||+|+..|+.+++++|++++.                                ...+.++..|.
T Consensus        79 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------------------------------~~~~~~~~~g~  125 (253)
T 1yyh_A           79 ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRA--------------------------------TDLDARMHDGT  125 (253)
T ss_dssp             TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT--------------------------------SCTTCCCTTCC
T ss_pred             cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------------------------CCccccCCCCC
Confidence            88775 6777788888888888888888888877664                                22333444444


Q ss_pred             cHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCC
Q 007677          202 TALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK  281 (593)
Q Consensus       202 t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~  281 (593)
                      ||||+|+..++          .++++.|++.|++++..+     ..|.||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus       126 t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~d-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~  189 (253)
T 1yyh_A          126 TPLILAARLAV----------EGMLEDLINSHADVNAVD-----DLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR  189 (253)
T ss_dssp             CHHHHHHHHTC----------SSHHHHHHHTTCCTTCBC-----TTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             cHHHHHHHcCh----------HHHHHHHHHcCCCCCCcC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence            55555554444          444445554444444332     45566666666666666666666666666 566666


Q ss_pred             CCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccc
Q 007677          282 DNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNV  338 (593)
Q Consensus       282 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~  338 (593)
                       |+||||+|+.+|+.+++++|+++|++    ++.+|..|+||||+|++.|+.+++..
T Consensus       190 -g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~g~~~i~~~  241 (253)
T 1yyh_A          190 -EETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRL  241 (253)
T ss_dssp             -SCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             -CCCHHHHHHHCCCHHHHHHHHHcCCC----ccccccCCCCHHHHHHHcCCHHHHHH
Confidence             66666666666666666666666666    55666666666666666666555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.9e-39  Score=329.62  Aligned_cols=261  Identities=16%  Similarity=0.098  Sum_probs=233.0

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      ..|..|+||||.||..|+.++|++|++. +.+++.+ |..|.||||+|+..|+.++|++|+++  +++++  +..|.|||
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~--~~~g~t~L   88 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVHS--LWHGQKPI   88 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCCC--CBTTBCHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCcc--ccCCCCHH
Confidence            5588999999999999999999999987 7889887 89999999999999999999999999  55443  45799999


Q ss_pred             HHHHHcCCHHHHHHHHhc----CCCCCcc-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHHhcc-cc
Q 007677          105 FYAVASESVELVKATMKG----NEGIATL-----------------PDNDGMLPIVRAASLG--RTEVVEFLYRETK-NS  160 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~-~~  160 (593)
                      |+|+..|+.+++++|++.    |.+. +.                 ++..|.||||+|+..|  +.+++++|+++++ .+
T Consensus        89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            999999999999999998    6654 33                 7889999999999999  9999999999998 88


Q ss_pred             cCCcchhHHHHHHHHcCCHHHHHHHHHhcch----hhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhc
Q 007677          161 LKDDDCIELLVQLIETGLYAVALQLLHDHRY----LATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILL  236 (593)
Q Consensus       161 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~  236 (593)
                      ..+..|.||||+|+..|+.++++.|++....    .++.+|..|.||||+|+..++          .++++.|++.|+++
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~gad~  237 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW----------EDVAMRFVEMGIDV  237 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC----------HHHHHHHHTTTCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC----------HHHHHHHHHcCCCC
Confidence            8999999999999999999999999998433    178899999999999999999          99999999999988


Q ss_pred             ChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCcc-----------ccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677          237 SKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLM-----------WKADKKDNYTIFHIAVKNRLEDLFKFIYDI  305 (593)
Q Consensus       237 ~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-----------~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~  305 (593)
                      +..+     ..|.||||+|+..|+.+++++|++++++..           ...+.. |+||++.|+..++.+.+..|+..
T Consensus       238 ~~~d-----~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aa~~~~~~~v~~ll~~  311 (364)
T 3ljn_A          238 NMED-----NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV-VWLDFVPAAADPSKQEVLQLLQE  311 (364)
T ss_dssp             TCCC-----TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGC-CCCTTSCSSCCHHHHHHHHHHHH
T ss_pred             CCCC-----CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccc-ccccchhhhhccCHHHHHHHHHH
Confidence            7655     789999999999999999999999986541           125667 99999999999988888888887


Q ss_pred             cCc
Q 007677          306 KPI  308 (593)
Q Consensus       306 ~~~  308 (593)
                      +.+
T Consensus       312 ~~~  314 (364)
T 3ljn_A          312 KLD  314 (364)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.1e-38  Score=307.21  Aligned_cols=231  Identities=20%  Similarity=0.186  Sum_probs=164.9

Q ss_pred             CccccccchHhHHHHHcC-------------CHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc
Q 007677           24 PAETITRRLKLYRAALNG-------------DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA   90 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~   90 (593)
                      +.+|.+|+||||.|+..|             +.++++.|++. +.+++...|..|.||||+|+..|+.++|++|+++  +
T Consensus         4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g   80 (253)
T 1yyh_A            4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--S   80 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--T
T ss_pred             CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--C
Confidence            367999999999999987             89999999987 6666555589999999999999999999999999  8


Q ss_pred             hhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHH
Q 007677           91 EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELL  170 (593)
Q Consensus        91 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L  170 (593)
                      ++++.+|..|.||||+|+..|+.+++++|+++++...+.++..|.||||+|+..|+.+++++|++.+.            
T Consensus        81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------  148 (253)
T 1yyh_A           81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------------  148 (253)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC------------
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC------------
Confidence            99999999999999999999999999999999984458899999999999999999999999998875            


Q ss_pred             HHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchh
Q 007677          171 VQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRE  250 (593)
Q Consensus       171 ~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t  250 (593)
                                           .++.+|.+|.||||+|+..++          .++++.|++.|++++..+     ..|.|
T Consensus       149 ---------------------~~~~~d~~g~t~L~~A~~~~~----------~~~v~~Ll~~ga~~~~~~-----~~g~t  192 (253)
T 1yyh_A          149 ---------------------DVNAVDDLGKSALHWAAAVNN----------VDAAVVLLKNGANKDMQN-----NREET  192 (253)
T ss_dssp             ---------------------CTTCBCTTSCBHHHHHHHHTC----------HHHHHHHHHTTCCTTCCC-----TTSCC
T ss_pred             ---------------------CCCCcCCCCCCHHHHHHHcCC----------HHHHHHHHHcCCCCCCcC-----CCCCC
Confidence                                 223345555566666665555          556666666655555433     66788


Q ss_pred             HHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccC
Q 007677          251 LIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKP  307 (593)
Q Consensus       251 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~  307 (593)
                      |||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+++|+.+++++|.+...
T Consensus       193 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~-g~tpl~~A~~~g~~~i~~~l~~~~~  247 (253)
T 1yyh_A          193 PLFLAAREGSYETAKVLLDHFANR-DITDHM-DRLPRDIAQERMHHDIVRLLDLEHH  247 (253)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHC---
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCc-cccccC-CCCHHHHHHHcCCHHHHHHHHHHhh
Confidence            888888899999999999999998 789999 9999999999999999999987644

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.6e-37  Score=298.77  Aligned_cols=216  Identities=20%  Similarity=0.208  Sum_probs=151.5

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      |.+|.||||+|+..|+.+++++|+++  +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|
T Consensus         8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   84 (237)
T 3b7b_A            8 HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLA   84 (237)
T ss_dssp             SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHH
T ss_pred             cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHH
Confidence            56666666666666666666666666  5666666666666666666666666666666666664 55666666666666


Q ss_pred             HHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677          142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE  221 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~  221 (593)
                      +..|+.+++++|++.++                                ...+.+|..|.||||+|+..++         
T Consensus        85 ~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~~---------  123 (237)
T 3b7b_A           85 AKKGHYEVVQYLLSNGQ--------------------------------MDVNCQDDGGWTPMIWATEYKH---------  123 (237)
T ss_dssp             HHTTCHHHHHHHHTTTC--------------------------------CCTTCCCTTSCCHHHHHHHTTC---------
T ss_pred             HHcCCHHHHHHHHhCCC--------------------------------CCcccCCCCCCCHHHHHHHcCC---------
Confidence            66666666666666552                                1122233334444444444433         


Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHH
Q 007677          222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF  301 (593)
Q Consensus       222 ~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~  301 (593)
                       .++++.|++.|.+++..+     ..|.||||+|+..|+.+++++|+++++++ +..|.. |+||||+|++.|+.+++++
T Consensus       124 -~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~  195 (237)
T 3b7b_A          124 -VDLVKLLLSKGSDINIRD-----NEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIH-GDSPLHIAARENRYDCVVL  195 (237)
T ss_dssp             -HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHH
T ss_pred             -HHHHHHHHHCCCCCCccC-----CCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCC-CCCHHHHHHHhCCHhHHHH
Confidence             344444444443333222     56678888888888999999999999998 788998 9999999999999999999


Q ss_pred             HhcccCccccccccccCCCCchhHhhhhhCCC
Q 007677          302 IYDIKPIADLMVDCTDEKGNNILHLAGELAPQ  333 (593)
Q Consensus       302 Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~  333 (593)
                      |+++|++    ++.+|.+|+||||+|+..++.
T Consensus       196 Ll~~gad----~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          196 FLSRDSD----VTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             HHTTTCC----TTCCCTTSCCHHHHSCTTCHH
T ss_pred             HHHcCCC----CCccCCCCCCHHHHHHHHHHH
Confidence            9999998    788999999999999998864

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.7e-37  Score=300.66  Aligned_cols=225  Identities=15%  Similarity=0.157  Sum_probs=138.1

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHh---hCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCC
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYD---KYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGC  101 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~---~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~  101 (593)
                      .+|.+|+||||.|+..|+.+++++|++   +.+.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|.
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~   80 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQ   80 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCC
Confidence            345556666666666666666665554   234555544 55566666666666666666666665  555555666666


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCC----CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcC
Q 007677          102 TAVFYAVASESVELVKATMKGNE----GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG  177 (593)
Q Consensus       102 TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~  177 (593)
                      ||||+|+..|+.+++++|++.++    ++ +..+..|.||||+|+..|+.+++++|++.+.                   
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~-------------------  140 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGA-------------------  140 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCC-------------------
Confidence            66666666666666666666554    32 4455556666666666666555555555443                   


Q ss_pred             CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHH
Q 007677          178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAAD  257 (593)
Q Consensus       178 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~  257 (593)
                                                                               +++..+    +..|.||||+|+.
T Consensus       141 ---------------------------------------------------------~~~~~~----~~~g~t~L~~A~~  159 (241)
T 1k1a_A          141 ---------------------------------------------------------DIDAVD----IKSGRSPLIHAVE  159 (241)
T ss_dssp             ---------------------------------------------------------CTTCCC----TTTCCCHHHHHHH
T ss_pred             ---------------------------------------------------------Cccccc----ccCCCcHHHHHHH
Confidence                                                                     222111    0234666666677


Q ss_pred             cCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccc
Q 007677          258 RGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLN  337 (593)
Q Consensus       258 ~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~  337 (593)
                      .|+.+++++|+++|+++ +..|.. |+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..++.++++
T Consensus       160 ~~~~~~v~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          160 NNSLSMVQLLLQHGANV-NAQMYS-GSSALHSASGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCC-CCcCCC-CCCHHHHHHHcCCHHHHHHHHhcCCC----CCCcCCCCCCHHHHHHhcCcHHHHh
Confidence            77777777777777776 667777 77777777777777777777777776    6677777777777777777766665


Q ss_pred             cc
Q 007677          338 VV  339 (593)
Q Consensus       338 ~l  339 (593)
                      .+
T Consensus       234 ~l  235 (241)
T 1k1a_A          234 GK  235 (241)
T ss_dssp             C-
T ss_pred             hh
Confidence            54

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.3e-37  Score=299.79  Aligned_cols=194  Identities=16%  Similarity=0.171  Sum_probs=166.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--CchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRM--SAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV  139 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  139 (593)
                      |.+|+||||+|+..|+.++|++|++..  .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~   84 (241)
T 1k1a_A            6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   84 (241)
T ss_dssp             -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            889999999999999999999999720  17789999999999999999999999999999999986 788999999999


Q ss_pred             HHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677          140 RAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN  219 (593)
Q Consensus       140 ~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~  219 (593)
                      +|+..|+.+++++|++.++..                             ....+.+|                      
T Consensus        85 ~A~~~~~~~~~~~Ll~~~~~~-----------------------------~~~~~~~~----------------------  113 (241)
T 1k1a_A           85 LACEHRSPTCLRALLDSAAPG-----------------------------TLDLEARN----------------------  113 (241)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTT-----------------------------SCCTTCCC----------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCc-----------------------------cccccccC----------------------
Confidence            999999999999998876400                             00111122                      


Q ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCcccccc-CCCCchHHHHHHHcCchhH
Q 007677          220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD-KKDNYTIFHIAVKNRLEDL  298 (593)
Q Consensus       220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~~g~t~Lh~Av~~~~~~i  298 (593)
                                                ..|.||||.|+..|+.+++++|+++++++ +..| .. |+||||+|+.+|+.++
T Consensus       114 --------------------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~-g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A          114 --------------------------YDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKS-GRSPLIHAVENNSLSM  165 (241)
T ss_dssp             --------------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTT-CCCHHHHHHHTTCHHH
T ss_pred             --------------------------cCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccC-CCcHHHHHHHcCCHHH
Confidence                                      45578888888888999999999999998 5666 67 9999999999999999


Q ss_pred             HHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          299 FKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       299 v~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      +++|++.|++    ++.+|..|+||||+|++.++.++++.|
T Consensus       166 v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L  202 (241)
T 1k1a_A          166 VQLLLQHGAN----VNAQMYSGSSALHSASGRGLLPLVRTL  202 (241)
T ss_dssp             HHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999998    889999999999999999998887765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.7e-36  Score=291.85  Aligned_cols=226  Identities=19%  Similarity=0.186  Sum_probs=186.7

Q ss_pred             cccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677           28 ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA  107 (593)
Q Consensus        28 ~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A  107 (593)
                      ..+.+|||.|+..|+.+.++++++..+..++.. +..|.||||+|+..|+.++|++|+++  +.+++.+|..|.||||+|
T Consensus         4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence            356789999999999999999999877766665 88899999999999999999999998  788999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          108 VASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       108 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                      +..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++++. .+..                        
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~------------------------  135 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK------------------------  135 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC------------------------
T ss_pred             HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc------------------------
Confidence            9999999999999999886 7888899999999999999999999988775 3334                        


Q ss_pred             HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677          187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI  266 (593)
Q Consensus       187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~  266 (593)
                                |..|.||||+|+..++          .++++.|++.|++++..+     ..|.||||+|+..|+.+++++
T Consensus       136 ----------~~~g~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~  190 (231)
T 3aji_A          136 ----------DHYDATAMHRAAAKGN----------LKMVHILLFYKASTNIQD-----TEGNTPLHLACDEERVEEAKF  190 (231)
T ss_dssp             ----------CTTSCCHHHHHHHHTC----------HHHHHHHHHTTCCSCCCC-----TTSCCHHHHHHHTTCHHHHHH
T ss_pred             ----------CCCCCcHHHHHHHcCC----------HHHHHHHHhcCCCccccC-----CCCCCHHHHHHHCCCHHHHHH
Confidence                      4445555555555554          555555555555544333     567888888888889999999


Q ss_pred             HHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          267 LIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       267 Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      |+++|+++ +.+|.. |+||||+|+..++.+++++|.++|++
T Consensus       191 Ll~~ga~~-~~~~~~-g~t~l~~A~~~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          191 LVTQGASI-YIENKE-EKTPLQVAKGGLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHTTCCS-CCCCTT-SCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHCCCCC-CCCCCC-CCCHHHHHHhhHHHHHHHHHcccccc
Confidence            99999998 788998 99999999999999999999988764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.5e-37  Score=309.92  Aligned_cols=236  Identities=19%  Similarity=0.230  Sum_probs=155.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      .|.||||.||..|+.++|++|+++  +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence            345556666665666666655555  4555555555556666666556666666666555554 4555555566666665


Q ss_pred             cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhH
Q 007677          144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA  222 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~  222 (593)
                      .|+.+++++|+++++ .+..+..|.||||.|+..++.++++.++...+...+..+..+.++++                 
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~-----------------  178 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML-----------------  178 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------------
T ss_pred             cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH-----------------
Confidence            555666665555555 44455555555555555555555555555544333333222222222                 


Q ss_pred             HHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHH
Q 007677          223 ETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI  302 (593)
Q Consensus       223 ~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~L  302 (593)
                       ..+..++..+.....    ..+..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.+++++|
T Consensus       179 -~~~~~~l~~~~~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~-g~tpL~~A~~~~~~~~v~~L  251 (299)
T 1s70_B          179 -RDARQWLNSGHINDV----RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYD-GWTPLHAAAHWGKEEACRIL  251 (299)
T ss_dssp             -HHHHHHHHHTCCCCC----CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHH
T ss_pred             -HHHHHHHhccCcchh----hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCC-CCcHHHHHHhcCCHHHHHHH
Confidence             122223333322211    12367899999999999999999999999998 889999 99999999999999999999


Q ss_pred             hcccCccccccccccCCCCchhHhhhhh
Q 007677          303 YDIKPIADLMVDCTDEKGNNILHLAGEL  330 (593)
Q Consensus       303 l~~~~~~~~lin~~D~~G~T~LH~A~~~  330 (593)
                      +++|++    ++.+|..|+||||+|++.
T Consensus       252 l~~gad----~~~~d~~g~t~l~~A~~~  275 (299)
T 1s70_B          252 VENLCD----MEAVNKVGQTAFDVADED  275 (299)
T ss_dssp             HHTTCC----TTCCCTTSCCTTTSCCSG
T ss_pred             HHcCCC----CCCcCCCCCCHHHHHHHH
Confidence            999998    789999999999999753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.6e-36  Score=290.59  Aligned_cols=223  Identities=19%  Similarity=0.169  Sum_probs=193.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      +..++||||.|+..|+.+.+++|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence            456899999999999999999999985 5668889999999999999999999999999999986 78899999999999


Q ss_pred             HHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677          142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE  221 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~  221 (593)
                      +..|+.+++++|++++.                                 ..+.+|..|.||||+|+..++         
T Consensus        81 ~~~~~~~~v~~Ll~~g~---------------------------------~~~~~~~~g~t~L~~A~~~~~---------  118 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGA---------------------------------HVNAVNQNGCTPLHYAASKNR---------  118 (231)
T ss_dssp             HHHTCHHHHHHHHHTTC---------------------------------CTTCCCTTSCCHHHHHHHTTC---------
T ss_pred             HHcCHHHHHHHHHHcCC---------------------------------CCCCCCCCCCCHHHHHHHcCC---------
Confidence            99999999999998875                                 123455566666666666666         


Q ss_pred             HHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHH
Q 007677          222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF  301 (593)
Q Consensus       222 ~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~  301 (593)
                       .++++.|++.|.+++..+     ..|.||||.|+..|+.+++++|+++++++ +.+|.. |+||||+|+..|+.+++++
T Consensus       119 -~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~  190 (231)
T 3aji_A          119 -HEIAVMLLEGGANPDAKD-----HYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTE-GNTPLHLACDEERVEEAKF  190 (231)
T ss_dssp             -HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT-SCCHHHHHHHTTCHHHHHH
T ss_pred             -HHHHHHHHHcCCCCCCcC-----CCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCC-CCCHHHHHHHCCCHHHHHH
Confidence             666666766666655443     67899999999999999999999999998 789999 9999999999999999999


Q ss_pred             HhcccCccccccccccCCCCchhHhhhhhCCCccccccc
Q 007677          302 IYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS  340 (593)
Q Consensus       302 Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~  340 (593)
                      |+++|++    ++.+|..|+||||+|++.++.+++++|.
T Consensus       191 Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~~lL~  225 (231)
T 3aji_A          191 LVTQGAS----IYIENKEEKTPLQVAKGGLGLILKRLAE  225 (231)
T ss_dssp             HHHTTCC----SCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred             HHHCCCC----CCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence            9999998    7899999999999999988877776654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.9e-36  Score=286.11  Aligned_cols=212  Identities=17%  Similarity=0.204  Sum_probs=146.6

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhc-hhcCCChHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK-QNKIGCTAVFYAV  108 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~  108 (593)
                      |+||||.|+..|+.+.++.|+++.+...+.. |..|.||||+|+..|+.+++++|++++...+++. +|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            4566666666666666666666643333323 6666666666666666666666666622244444 5566666666666


Q ss_pred             HcCCHHHHHHHHhcC--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          109 ASESVELVKATMKGN--EGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                      ..|+.+++++|+++|  +++ +.++..|.||||+|+..|+.+++++|++++.                            
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------  131 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA----------------------------  131 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred             HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----------------------------
Confidence            666666666666665  443 5556666666666666666666666655442                            


Q ss_pred             HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677          187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI  266 (593)
Q Consensus       187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~  266 (593)
                           .++.+|                                                ..|.||||+|+..|+.+++++
T Consensus       132 -----~~~~~~------------------------------------------------~~g~t~L~~A~~~~~~~~v~~  158 (228)
T 2dzn_A          132 -----SVRIKD------------------------------------------------KFNQIPLHRAASVGSLKLIEL  158 (228)
T ss_dssp             -----CSCCCC------------------------------------------------TTSCCHHHHHHHTTCHHHHHH
T ss_pred             -----CccccC------------------------------------------------CCCCCHHHHHHHcCCHHHHHH
Confidence                 112222                                                455777777888888999999


Q ss_pred             HHHHC-CCccccccCCCCchHHHHHHHcCchhHHHHHh-cccCccccccccccCCCCchhHhhhhh
Q 007677          267 LIREY-PDLMWKADKKDNYTIFHIAVKNRLEDLFKFIY-DIKPIADLMVDCTDEKGNNILHLAGEL  330 (593)
Q Consensus       267 Ll~~~-~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll-~~~~~~~~lin~~D~~G~T~LH~A~~~  330 (593)
                      |++++ .++ +.+|.. |+||||+|+..|+.+++++|+ +.|++    ++.+|..|+||||+|++.
T Consensus       159 Ll~~g~~~~-~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~~ga~----~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          159 LCGLGKSAV-NWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HHTTTCCCS-CCCCTT-SCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCBCTTSCBGGGGCSST
T ss_pred             HHhcCcccc-cCcCCC-CCCHHHHHHHcCCHHHHHHHHHhcCCC----CCccCCCCCcHHHHHHHH
Confidence            99999 665 888998 999999999999999999999 88988    788999999999999765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=4.4e-36  Score=297.82  Aligned_cols=250  Identities=13%  Similarity=-0.001  Sum_probs=188.4

Q ss_pred             CccccccchHhHHHHHcCCHHHHHHHHhhCccc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCC
Q 007677           24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGE---IGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIG  100 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g  100 (593)
                      ..+|..|+||||.|+..|+.++++.|++. +.+   ++.+ +..|.||||+|+..|+.++|++|+++  +++++.+|..|
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g   78 (282)
T 1oy3_D            3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGG   78 (282)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTS
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCC
Confidence            35799999999999999999999999986 444   6666 88999999999999999999999999  89999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCC------------ccCCCCCCCHHHHHHHcCCHHHHH-HHHHhcc-cccCCcch
Q 007677          101 CTAVFYAVASESVELVKATMKGNEGIA------------TLPDNDGMLPIVRAASLGRTEVVE-FLYRETK-NSLKDDDC  166 (593)
Q Consensus       101 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~------------~~~~~~g~tpL~~A~~~g~~~iv~-~Ll~~~~-~~~~~~~g  166 (593)
                      .||||+|+..|+.+++++|++++++..            ......+.+|++.++..+...... .+...+. .+..+..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            999999999999999999999987632            122344667887777765544333 3333333 66788999


Q ss_pred             hHHHHHHHHcCCHHHHHHHHHhcchhhhcccc-CCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHh
Q 007677          167 IELLVQLIETGLYAVALQLLHDHRYLATKRAK-NKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELI  245 (593)
Q Consensus       167 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  245 (593)
                      .||||.|+..|+.++++.|++. +..++.++. .|.||||+|+..++          .++++.|++.|++++..+     
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~----------~~~v~~Ll~~gad~~~~d-----  222 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQA----------ASVLELLLKAGADPTARM-----  222 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----
T ss_pred             cCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCC----------HHHHHHHHHcCCCCcccc-----
Confidence            9999999999999999999998 556666664 59999999999999          899999999999887655     


Q ss_pred             hcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCc
Q 007677          246 EQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRL  295 (593)
Q Consensus       246 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~  295 (593)
                      ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |.|||++|.....
T Consensus       223 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~-g~tpl~~a~~~~~  270 (282)
T 1oy3_D          223 YGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGD-KLSPCSSSGSDSD  270 (282)
T ss_dssp             TTSCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC----------------
T ss_pred             cCCCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCc-ccccccccCCccc
Confidence            78999999999999999999999999998 899999 9999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.8e-35  Score=285.91  Aligned_cols=227  Identities=19%  Similarity=0.182  Sum_probs=188.5

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT  102 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  102 (593)
                      .+.+|..|.||||.|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+.++|++|+++  +++++.+|..|.|
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t   79 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGST   79 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCC
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCc
Confidence            346789999999999999999999999987 7888876 88999999999999999999999998  8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHH
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAV  181 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~  181 (593)
                      |||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999954458899999999999999999999999999876 44444445555555555554444


Q ss_pred             HHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH
Q 007677          182 ALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV  261 (593)
Q Consensus       182 v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~  261 (593)
                      +                                            +.|++.|++++..+     ..|.||||+|++.|+.
T Consensus       160 ~--------------------------------------------~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~  190 (237)
T 3b7b_A          160 A--------------------------------------------EILLAAKCDLHAVN-----IHGDSPLHIAARENRY  190 (237)
T ss_dssp             H--------------------------------------------HHHHTTTCCTTCCC-----TTCCCHHHHHHHTTCH
T ss_pred             H--------------------------------------------HHHHHcCCCCCCcC-----CCCCCHHHHHHHhCCH
Confidence            4                                            44444444444332     5667888888888889


Q ss_pred             HHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          262 QFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       262 ~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      +++++|+++|+++ +.+|.. |+||||+|+.+++.+.+..+++
T Consensus       191 ~~v~~Ll~~gad~-~~~d~~-g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          191 DCVVLFLSRDSDV-TLKNKE-GETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHHHTTTCCT-TCCCTT-SCCHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHcCCCC-CccCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998 788988 9999999999998876666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=299.01  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=87.0

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccc-------cccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCchhhhch
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGE-------IGVEITNHGKTALHVAAEANRI-DFVKKLLKRMSAEDLAKQ   96 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~~~~~g~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~   96 (593)
                      .+|.++.++|+.||..|+.++|+.|++....+       ++.. +..|.||||.|+..++. ++++.|++.  |+++|.+
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~   82 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVT   82 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C--CCCTTCC
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCc
Confidence            45888889999999999999999999864322       2333 67788999999988775 478888888  8899999


Q ss_pred             hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677           97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus        97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      |.+|+||||+|+..|+.++|++|++.|+++ ..++..|.||+|+|+..++.+++++|++.++
T Consensus        83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  143 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA  143 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC
Confidence            999999999999999999999999999886 7888899999999999999999998887764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.2e-35  Score=292.46  Aligned_cols=236  Identities=13%  Similarity=0.057  Sum_probs=192.9

Q ss_pred             HHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHH
Q 007677           38 ALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK  117 (593)
Q Consensus        38 a~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~  117 (593)
                      +...+.+.+..++.+.  +++.+ |..|.||||+|+..|+.++|++|+++  +++++.+|  |+||||+|+..|+.++++
T Consensus         7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~v~   79 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVK   79 (285)
T ss_dssp             GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHHHH
T ss_pred             HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHHHH
Confidence            3455666666677653  45655 78888888888888888888888888  77777774  888888888888888888


Q ss_pred             HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcch-hHHHHHHHHcCCHHHHHHHHHhcchhhhc
Q 007677          118 ATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDC-IELLVQLIETGLYAVALQLLHDHRYLATK  195 (593)
Q Consensus       118 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  195 (593)
                      +|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..| .||||.|+..|+.++++.|++.....   
T Consensus        80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---  155 (285)
T 3kea_A           80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---  155 (285)
T ss_dssp             HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---
T ss_pred             HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---
Confidence            888888886 6788888888888888888888888888887 77777777 78888888888888888888875433   


Q ss_pred             ccc-CCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhH-HHHHHHcCcHHHHHHHHHHCCC
Q 007677          196 RAK-NKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPREL-IHDAADRGNVQFLSILIREYPD  273 (593)
Q Consensus       196 ~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tp-Lh~Aa~~g~~~~v~~Ll~~~~~  273 (593)
                      .+. .|.||||+|+..++          .+++++|++.|++++..+     ..|.|| ||+|+..|+.+++++|+++|++
T Consensus       156 ~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~gad~n~~~-----~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          156 FDLAILLSCIHITIKNGH----------VDMMILLLDYMTSTNTNN-----SLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             CCCSTHHHHHHHHHHTTC----------HHHHHHHHHHHHHTCTTC-----CCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             ccccCCccHHHHHHHcCh----------HHHHHHHHHcCCCCCccc-----CCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence            233 78999999999988          889999999998888655     788887 9999999999999999999998


Q ss_pred             ccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          274 LMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       274 ~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      + +..|.        .|+..|+.+++++|+++|.+
T Consensus       221 ~-~~~~~--------~a~~~~~~~iv~~Ll~~g~~  246 (285)
T 3kea_A          221 I-YSANL--------ENVLLDDAEIAKMIIEKHVE  246 (285)
T ss_dssp             S-TTTTG--------GGGTTTCHHHHHHHHHHHHH
T ss_pred             C-CCCCh--------hhhhcCCHHHHHHHHHcCCC
Confidence            8 45543        45778999999999999987

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-34  Score=278.71  Aligned_cols=198  Identities=19%  Similarity=0.201  Sum_probs=152.6

Q ss_pred             HHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhC-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677            9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKY-EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR   87 (593)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~   87 (593)
                      +.++.+...+.+. ....|..|+||||.|+..|+.++++.|++.. ..+++...+..|.||||+|+..|+.+++++|+++
T Consensus        16 ~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   94 (228)
T 2dzn_A           16 FKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   94 (228)
T ss_dssp             HHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred             HHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            3444444444322 2257899999999999999999999999973 1555552488999999999999999999999998


Q ss_pred             CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc-c-cccCCcc
Q 007677           88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET-K-NSLKDDD  165 (593)
Q Consensus        88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~-~~~~~~~  165 (593)
                      +.+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+ . .+..|..
T Consensus        95 g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~  173 (228)
T 2dzn_A           95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ  173 (228)
T ss_dssp             SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTT
T ss_pred             CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCC
Confidence            323889999999999999999999999999999999996 889999999999999999999999999988 3 4445555


Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHH
Q 007677          166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLA  208 (593)
Q Consensus       166 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~  208 (593)
                      |.||||.|+..|+.++++.|++..+.+++.+|.+|.||+|+|+
T Consensus       174 g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence            5555555555555555555553334444555555555555554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.8e-36  Score=296.15  Aligned_cols=215  Identities=14%  Similarity=0.214  Sum_probs=150.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCc------hhhhchhcCCChHHHHHHHcCCH-HHHHHHHhcCCCCCccCCCCC
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSA------EDLAKQNKIGCTAVFYAVASESV-ELVKATMKGNEGIATLPDNDG  134 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~------~~~~~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~g  134 (593)
                      |..+.+||+.||+.|+.++|++|++....      ..++..|..|.||||.|+..++. ++++.|++.|+++ +.+|.+|
T Consensus         8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G   86 (269)
T 4b93_B            8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG   86 (269)
T ss_dssp             CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence            66778999999999999999999988411      12667788899999999988876 4889999999997 8899999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCC
Q 007677          135 MLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLG  213 (593)
Q Consensus       135 ~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~  213 (593)
                      +||||+|+..|+.+++++|++.++ .+..                                  +.+|.||+|+|+..++ 
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~----------------------------------~~~g~t~l~~a~~~~~-  131 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGAR----------------------------------NADQAVPLHLACQQGH-  131 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCC----------------------------------CTTCCCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCcc----------------------------------CCCCCCccccccccCh-
Confidence            999999999999999999998876 4444                                  4445555555555554 


Q ss_pred             cccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHc
Q 007677          214 DKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKN  293 (593)
Q Consensus       214 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~  293 (593)
                               .++++.|++.|++++..+     ..|.||||+|+..|+.+++++|+++|+++ +..|.. |+||||+|+.+
T Consensus       132 ---------~~~~~~Ll~~g~~~n~~d-----~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~-g~t~Lh~A~~~  195 (269)
T 4b93_B          132 ---------FQVVKCLLDSNAKPNKKD-----LSGNTPLIYACSGGHHELVALLLQHGASI-NASNNK-GNTALHEAVIE  195 (269)
T ss_dssp             ---------HHHHHHHHHTTCCSCCCC-----TTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTT-SCBHHHHHHHT
T ss_pred             ---------HHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccC-CCcHHHHHHHc
Confidence                     455555555555554433     56788888888888899999999999998 789999 99999999999


Q ss_pred             CchhHHHHHhcccCccccccccccCCCCchhHhhhhhCC
Q 007677          294 RLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAP  332 (593)
Q Consensus       294 ~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~  332 (593)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+++++
T Consensus       196 g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          196 KHVFVVELLLLHGAS----VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TCHHHHHHHHHTTCC----SCCCCTTSCCSGGGSCTTCH
T ss_pred             CCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHhCCc
Confidence            999999999999998    78999999999999987664

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.1e-36  Score=298.50  Aligned_cols=250  Identities=18%  Similarity=0.204  Sum_probs=214.3

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      ..+..|.||||.||..|+.+.++.|++. +.+++.. |..|.||||+|+..|+.++|++|+++  +++++.+|..|.|||
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL  110 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPL  110 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence            3466788999999999999999999997 7888887 89999999999999999999999998  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      |+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++++....  .+..+..+.++++        ..+
T Consensus       111 ~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~  181 (299)
T 1s70_B          111 HAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDA  181 (299)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHH
Confidence            9999999999999999999996 7889999999999999999999999987655  2222333334333        234


Q ss_pred             HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677          183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ  262 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~  262 (593)
                      ..++..........+..|.||||+|+..++          .++++.|++.|++++..+     ..|.||||+|+..|+.+
T Consensus       182 ~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~g~d~~~~d-----~~g~tpL~~A~~~~~~~  246 (299)
T 1s70_B          182 RQWLNSGHINDVRHAKSGGTALHVAAAKGY----------TEVLKLLIQARYDVNIKD-----YDGWTPLHAAAHWGKEE  246 (299)
T ss_dssp             HHHHHHTCCCCCCCTTTCCCHHHHHHHHTC----------HHHHHHHHTTTCCTTCCC-----TTCCCHHHHHHHTTCHH
T ss_pred             HHHHhccCcchhhhcCCCCCHHHHHHHCCc----------HHHHHHHHHcCCCCCCcC-----CCCCcHHHHHHhcCCHH
Confidence            456666555555678899999999999999          899999999998887654     78999999999999999


Q ss_pred             HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677          263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI  305 (593)
Q Consensus       263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~  305 (593)
                      ++++|+++|+++ +.+|.. |+||||+|++.. .+.++.+++.
T Consensus       247 ~v~~Ll~~gad~-~~~d~~-g~t~l~~A~~~~-~~~l~~l~~~  286 (299)
T 1s70_B          247 ACRILVENLCDM-EAVNKV-GQTAFDVADEDI-LGYLEELQKK  286 (299)
T ss_dssp             HHHHHHHTTCCT-TCCCTT-SCCTTTSCCSGG-GHHHHHHHHH
T ss_pred             HHHHHHHcCCCC-CCcCCC-CCCHHHHHHHHH-HHHHHHHHHH
Confidence            999999999998 889999 999999997654 4444444443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.4e-35  Score=281.97  Aligned_cols=232  Identities=18%  Similarity=0.190  Sum_probs=172.0

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhc-hhcCCChH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK-QNKIGCTA  103 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~Tp  103 (593)
                      ..|..|.++||.|+..|+.+.+++|++. +.+++.+ +..|.||||+|+..|+.++|++|+++  +.+++. .+..|.||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQP-DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTP   79 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCCh
Confidence            4577777888888888888888877775 5667665 77778888888888888888888877  555543 33447788


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      ||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++++.                         
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~-------------------------  133 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ-------------------------  133 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------------------------
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-------------------------
Confidence            88888888888888888877775 6677778888888888888888877777664                         


Q ss_pred             HHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHH
Q 007677          184 QLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQF  263 (593)
Q Consensus       184 ~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~  263 (593)
                              .++.+|.+|.||||+|+..++         ..++++.|++.+.+++..+.    ..|.||||+|+..|+.++
T Consensus       134 --------~~~~~~~~g~t~l~~a~~~~~---------~~~~~~~L~~~~~~~~~~~~----~~g~t~L~~A~~~~~~~~  192 (240)
T 3eu9_A          134 --------DVDMMDQNGMTPLMWAAYRTH---------SVDPTRLLLTFNVSVNLGDK----YHKNTALHWAVLAGNTTV  192 (240)
T ss_dssp             --------CTTCCCTTSCCHHHHHHHHCC---------SSTTHHHHHHTTCCTTCCCT----TTCCCHHHHHHHHTCHHH
T ss_pred             --------CccccCCCCCcHHHHHHHhCC---------hHHHHHHHHhcCCCcchhhc----cCCCcHHHHHHHcCCHHH
Confidence                    233455556666666664432         03455666666665554331    267899999999999999


Q ss_pred             HHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcc
Q 007677          264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIA  309 (593)
Q Consensus       264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  309 (593)
                      +++|+++|+++ +..|.. |+||||+|+++|+.+++++|++.+...
T Consensus       193 v~~Ll~~g~~~-~~~~~~-g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          193 ISLLLEAGANV-DAQNIK-GESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             HHHHHHHTCCT-TCBCTT-SCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             HHHHHHcCCCC-CCcCCC-CCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            99999999998 788998 999999999999999999999988763

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-36  Score=307.12  Aligned_cols=267  Identities=13%  Similarity=0.041  Sum_probs=208.5

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch----------
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ----------   96 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~----------   96 (593)
                      +....+|+|    ....+.+++|+++ |.+++.. +..|.|++|     |+.++|+.|+++  +.+.+..          
T Consensus        20 ~~~~~~~~~----~~~~dlv~~ll~~-ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~   86 (327)
T 1sw6_A           20 NDRTAGPII----TFTHDLTSDFLSS-PLKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDS   86 (327)
T ss_dssp             -----CCEE----ECCTTCCCSTTTS-SCCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC--------------
T ss_pred             ccccccchh----hhcCchHHHHhhC-CcccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhccc
Confidence            444556666    3555678888876 8999987 899999988     999999999998  6665431          


Q ss_pred             -------hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchh
Q 007677           97 -------NKIGCTAVFYAVASESVELVKATMKGNEGIATL-PDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCI  167 (593)
Q Consensus        97 -------d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~  167 (593)
                             .....+.+|.|+..+..++++.|++.|+++ +. +|..|.||||+|+..|+.+++++|+++++ .+..+..|.
T Consensus        87 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~  165 (327)
T 1sw6_A           87 SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE  165 (327)
T ss_dssp             -----------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred             ccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                   111223458888888899999999999997 56 89999999999999999999999999999 888999999


Q ss_pred             HHHHHHHHcCC---HHHHHHHHHhcchhhhccccCCccHHHHHHh----cCCCcccccchhHHHHHHHHHHHHHhcC---
Q 007677          168 ELLVQLIETGL---YAVALQLLHDHRYLATKRAKNKETALHVLAR----KNLGDKDRKNKEAETLVESLWEEVILLS---  237 (593)
Q Consensus       168 t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~----~~~~~~~~~~~~~~~~~~~L~~~~~~~~---  237 (593)
                      ||||+|+..|+   .++++.|++.....++.+|..|+||||+|+.    .++          .++++.|++.+....   
T Consensus       166 TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~----------~~~v~~Ll~~~~~~~~~~  235 (327)
T 1sw6_A          166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC----------SAAAKYYLDILMGWIVKK  235 (327)
T ss_dssp             CHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHG
T ss_pred             CHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc----------HHHHHHHHHHHHHHHhcc
Confidence            99999999988   6888888888667788999999999999998    677          889999988854221   


Q ss_pred             ------------hHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677          238 ------------KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI  305 (593)
Q Consensus       238 ------------~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~  305 (593)
                                  ..+.+..+..|.||||.|+.      +++|+++  ++ +.+|.. |+||||+|+++|+.+++++|+++
T Consensus       236 ~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~-n~~d~~-G~TpLh~A~~~g~~~~v~~Ll~~  305 (327)
T 1sw6_A          236 QNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--ML-NAQDSN-GDTCLNIAARLGNISIVDALLDY  305 (327)
T ss_dssp             GGCCEEEC----------------CHHHHHCS------HHHHHHH--TT-TCCCTT-SCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             cchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CC-CCCCCC-CCCHHHHHHHcCCHHHHHHHHHc
Confidence                        22334456889999999996      8999998  44 678999 99999999999999999999999


Q ss_pred             cCccccccccccCCCCchhHhhhhhC
Q 007677          306 KPIADLMVDCTDEKGNNILHLAGELA  331 (593)
Q Consensus       306 ~~~~~~lin~~D~~G~T~LH~A~~~~  331 (593)
                      |++    ++.+|..|+||||+|++.|
T Consensus       306 Gad----~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          306 GAD----PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             TCC----TTCCCTTSCCGGGGTCC--
T ss_pred             CCC----CcccCCCCCCHHHHHHhcC
Confidence            999    8899999999999999764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2e-34  Score=286.79  Aligned_cols=221  Identities=15%  Similarity=0.161  Sum_probs=202.7

Q ss_pred             CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      +.+|..|+||||.|+..|+.++++.|++. +.+++.+   +|.||||+|+..|+.++|++|+++  +++++.+|..|.||
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~   98 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTA   98 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcH
Confidence            37799999999999999999999999997 7888765   589999999999999999999999  89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCC-CCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDG-MLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVA  182 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v  182 (593)
                      ||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|+++++.......|.||||.|+..|+.+++
T Consensus        99 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v  177 (285)
T 3kea_A           99 LYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM  177 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence            99999999999999999999997 7889999 899999999999999999999998332233899999999999999999


Q ss_pred             HHHHHhcchhhhccccCCccH-HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH
Q 007677          183 LQLLHDHRYLATKRAKNKETA-LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV  261 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~g~t~-Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~  261 (593)
                      +.|+++ +.+++.+|..|.|| ||+|+..++          .+++++|++.|++++..+            +.|+..|+.
T Consensus       178 ~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~----------~~~v~~Ll~~gad~~~~~------------~~a~~~~~~  234 (285)
T 3kea_A          178 ILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD----------IEMLQALFKYDINIYSAN------------LENVLLDDA  234 (285)
T ss_dssp             HHHHHH-HHHTCTTCCCBCCTTHHHHHHHTC----------HHHHHHHTTSCBCSTTTT------------GGGGTTTCH
T ss_pred             HHHHHc-CCCCCcccCCCCChHHHHHHHcCC----------HHHHHHHHHcCCCCCCCC------------hhhhhcCCH
Confidence            999998 78889999999998 999999999          999999999999887654            256779999


Q ss_pred             HHHHHHHHHCCCc
Q 007677          262 QFLSILIREYPDL  274 (593)
Q Consensus       262 ~~v~~Ll~~~~~~  274 (593)
                      +++++|+++|.++
T Consensus       235 ~iv~~Ll~~g~~~  247 (285)
T 3kea_A          235 EIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999886

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.7e-34  Score=276.26  Aligned_cols=216  Identities=20%  Similarity=0.213  Sum_probs=170.7

Q ss_pred             CCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHH
Q 007677           41 GDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM  120 (593)
Q Consensus        41 g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll  120 (593)
                      |+.+++++|+++ +.+++...|..|.||||+|+..|+.++|++|+++  +++++.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            567777777776 6666655578899999999999999999999988  7888889999999999999999999999999


Q ss_pred             hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCC
Q 007677          121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK  200 (593)
Q Consensus       121 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g  200 (593)
                      ++++...+.++..|.||||+|+..|+.+++++|+++++                                 .++.+|..|
T Consensus        79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------------~~~~~~~~g  125 (223)
T 2f8y_A           79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA---------------------------------DVNAVDDLG  125 (223)
T ss_dssp             HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---------------------------------CTTCBCTTS
T ss_pred             HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC---------------------------------CCcCcCCCC
Confidence            98875457888889999999999999999998888765                                 123344455


Q ss_pred             ccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccC
Q 007677          201 ETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADK  280 (593)
Q Consensus       201 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~  280 (593)
                      .||||+|+..++          .++++.|++.|++++..+     ..|.||||+|+..|+.+++++|+++++++ +.+|.
T Consensus       126 ~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~  189 (223)
T 2f8y_A          126 KSALHWAAAVNN----------VDAAVVLLKNGANKDMQN-----NREETPLFLAAREGSYETAKVLLDHFANR-DITDH  189 (223)
T ss_dssp             CBHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             CcHHHHHHHcCC----------HHHHHHHHHcCCCCCCcC-----CCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence            555555555555          555555555555544333     56788888888889999999999999998 78898


Q ss_pred             CCCchHHHHHHHcCchhHHHHHhcccCcc
Q 007677          281 KDNYTIFHIAVKNRLEDLFKFIYDIKPIA  309 (593)
Q Consensus       281 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~  309 (593)
                      . |+||||+|+++++.+++++|+++|+..
T Consensus       190 ~-g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          190 M-DRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             T-CCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             c-CCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            8 999999999999999999999998763

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=273.44  Aligned_cols=198  Identities=19%  Similarity=0.176  Sum_probs=154.8

Q ss_pred             HHHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677            8 SKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR   87 (593)
Q Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~   87 (593)
                      .+.++.+.+.+.+.+  .+|..|.||||.|+..|+.++++.|++. +.+++...+..|.||||+|+..|+.+++++|++.
T Consensus        22 ~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~   98 (240)
T 3eu9_A           22 YERCRELVEAGYDVR--QPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY   98 (240)
T ss_dssp             HHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hHHHHHHHHcCCCcC--CCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence            345556666655443  7789999999999999999999999997 5666655466799999999999999999999999


Q ss_pred             CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC-HHHHHHHHHhcc-cccCCc-
Q 007677           88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR-TEVVEFLYRETK-NSLKDD-  164 (593)
Q Consensus        88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~iv~~Ll~~~~-~~~~~~-  164 (593)
                        +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++ .+++++|++.+. .+..+. 
T Consensus        99 --g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~  175 (240)
T 3eu9_A           99 --GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY  175 (240)
T ss_dssp             --TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred             --CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc
Confidence              8999999999999999999999999999999999996 7899999999999997766 889999988876 444443 


Q ss_pred             chhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677          165 DCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       165 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      .|.||||.|+..|+.++++.|++. +..++.+|..|.||||+|++.++
T Consensus       176 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          176 HKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCc
Confidence            555666666666666666655555 34444444444444444444444

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.8e-34  Score=277.48  Aligned_cols=222  Identities=18%  Similarity=0.186  Sum_probs=166.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCC--chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMS--AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV  139 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  139 (593)
                      |.+|.||||+|+..|+.+++++|++...  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence            6677777777777777777777776631  1257777777777777777777777777777777775 667777777777


Q ss_pred             HHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCccccc
Q 007677          140 RAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRK  218 (593)
Q Consensus       140 ~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~  218 (593)
                      +|+..|+.+++++|++.+. ..                            .....+..+..|.||||+|+..++      
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~----------------------------~~~~~~~~~~~g~t~L~~A~~~~~------  129 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPH----------------------------LHSILKATNYNGHTCLHLASIHGY------  129 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTS----------------------------SSCGGGCCCTTCCCHHHHHHHTTC------
T ss_pred             HHHHcCCHHHHHHHHhcccchh----------------------------HHHHhhccCCCCCCHHHHHHHcCC------
Confidence            7777777777777777664 10                            012234566667777777777776      


Q ss_pred             chhHHHHHHHHHHHHHhcChHHHHHHhh-cchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchh
Q 007677          219 NKEAETLVESLWEEVILLSKQEIWELIE-QPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLED  297 (593)
Q Consensus       219 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~  297 (593)
                          .+++++|++.|++++..+     . .|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.+
T Consensus       130 ----~~~v~~Ll~~g~~~~~~~-----~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~-g~tpl~~A~~~~~~~  198 (236)
T 1ikn_D          130 ----LGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQ-GYSPYQLTWGRPSTR  198 (236)
T ss_dssp             ----HHHHHHHHHHTCCTTCCC-----TTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTT-CCCGGGGCTTSSCHH
T ss_pred             ----HHHHHHHHHcCCCCCCCC-----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCC-CCCHHHHHHccCchH
Confidence                677777777776666543     4 7899999999999999999999999998 789999 999999999999999


Q ss_pred             HHHHHhcccCccccccccccCCCCchhHhhhhhC
Q 007677          298 LFKFIYDIKPIADLMVDCTDEKGNNILHLAGELA  331 (593)
Q Consensus       298 iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~  331 (593)
                      ++++|+++|++..  ...++.+|+||.+.+....
T Consensus       199 ~~~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~  230 (236)
T 1ikn_D          199 IQQQLGQLTLENL--QMLPESEDEESYDTESEFT  230 (236)
T ss_dssp             HHHHHHTTSCGGG--SSCCCCCTTTCCCCC----
T ss_pred             HHHHHHHcchhhh--hcCCccchHHHHhhhcccc
Confidence            9999999999743  4578999999999887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-33  Score=268.03  Aligned_cols=208  Identities=19%  Similarity=0.206  Sum_probs=171.6

Q ss_pred             CCHHHHHHHHHcCCchhhhch-hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007677           76 NRIDFVKKLLKRMSAEDLAKQ-NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLY  154 (593)
Q Consensus        76 g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll  154 (593)
                      |+.+++++|+++  +.+++.. |..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus         2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll   78 (223)
T 2f8y_A            2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI   78 (223)
T ss_dssp             ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            566777777777  5665544 677778888888777888888777777775 667777777777777777777777777


Q ss_pred             HhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHH
Q 007677          155 RETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVI  234 (593)
Q Consensus       155 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~  234 (593)
                      +.+                                +...+.++..|.||||+|+..++          .++++.|++.++
T Consensus        79 ~~~--------------------------------~~~~~~~~~~g~t~L~~A~~~~~----------~~~~~~Ll~~g~  116 (223)
T 2f8y_A           79 RNR--------------------------------ATDLDARMHDGTTPLILAARLAV----------EGMLEDLINSHA  116 (223)
T ss_dssp             HBT--------------------------------TSCTTCCCTTCCCHHHHHHHHTC----------HHHHHHHHHTTC
T ss_pred             HcC--------------------------------CCCcccCCCCCCcHHHHHHHhCc----------HHHHHHHHHcCC
Confidence            654                                33456678889999999999888          899999999888


Q ss_pred             hcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccc
Q 007677          235 LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVD  314 (593)
Q Consensus       235 ~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin  314 (593)
                      +++..+     ..|.||||+|+..|+.+++++|+++++++ +.+|.. |+||||+|+.+|+.+++++|+++|++    ++
T Consensus       117 ~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~  185 (223)
T 2f8y_A          117 DVNAVD-----DLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR-EETPLFLAAREGSYETAKVLLDHFAN----RD  185 (223)
T ss_dssp             CTTCBC-----TTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCC----TT
T ss_pred             CCcCcC-----CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC-CcCHHHHHHHcCCHHHHHHHHHcCCC----Cc
Confidence            877654     78899999999999999999999999998 788999 99999999999999999999999998    78


Q ss_pred             cccCCCCchhHhhhhhCCCcccccc
Q 007677          315 CTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       315 ~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      .+|..|+||||+|++.++.++++.|
T Consensus       186 ~~~~~g~t~l~~A~~~~~~~i~~~L  210 (223)
T 2f8y_A          186 ITDHMDRLPRDIAQERMHHDIVRLL  210 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccCCCHHHHHHHhcchHHHHHH
Confidence            8999999999999999997766544

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.7e-32  Score=264.07  Aligned_cols=206  Identities=18%  Similarity=0.160  Sum_probs=129.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCC----ccCCCCCCCHHHH
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA----TLPDNDGMLPIVR  140 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~~  140 (593)
                      |+||||+|++.|+.++|++|++.. +.+++.+|..|+||||+|+..|+.+++++|+++|+++.    ..+|..|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            555666666666666665555543 45555555556666666666666666666665555431    2344456666666


Q ss_pred             HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677          141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN  219 (593)
Q Consensus       141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~  219 (593)
                      |+..|+.+++++|+++++ .+..+....  +                   ....+..|.+|.||||+|+..++       
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~-------------------~~~~~~~~~~g~t~L~~A~~~~~-------  133 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSV--F-------------------HYRPHNLIYYGEHPLSFAACVGS-------  133 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGG--G-------------------SCCTTCSCCCCSSHHHHHHHHTC-------
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcc--e-------------------eecccccccCCCCHHHHHHHcCC-------
Confidence            666666666666665554 222221110  0                   01122345567777777777666       


Q ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHH----HHHHHHCCCcc-----ccccCCCCchHHHHH
Q 007677          220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFL----SILIREYPDLM-----WKADKKDNYTIFHIA  290 (593)
Q Consensus       220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v----~~Ll~~~~~~~-----~~~d~~~g~t~Lh~A  290 (593)
                         .++++.|++.|++++..+     ..|.||||+|+..|+.+++    ++|++++++..     +.+|.. |+||||+|
T Consensus       134 ---~~~v~~Ll~~ga~~~~~d-----~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~-g~tpl~~A  204 (232)
T 2rfa_A          134 ---EEIVRLLIEHGADIRAQD-----SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ-GLTPFKLA  204 (232)
T ss_dssp             ---HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT-SCCHHHHH
T ss_pred             ---HHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC-CCCHHHHH
Confidence               667777777666665443     6677777777777777766    88888887763     577888 99999999


Q ss_pred             HHcCchhHHHHHhcccCc
Q 007677          291 VKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       291 v~~~~~~iv~~Ll~~~~~  308 (593)
                      +++|+.+++++|+++|..
T Consensus       205 ~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          205 GVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhcCcc
Confidence            999999999999988766

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.98  E-value=1.2e-31  Score=252.04  Aligned_cols=200  Identities=20%  Similarity=0.186  Sum_probs=151.1

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +..+.||||.|+..|+.+.++.++++.+.+++.. |..|.||||+|+..|+.++|++|+++  +++++.+|..|.||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence            3456778888888888888887777766677765 77778888888888888888888877  67777777778888888


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                      |+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++++                             
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----------------------------  129 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG-----------------------------  129 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC-----------------------------
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC-----------------------------
Confidence            888888888888775443333677777778888887777777777777665                             


Q ss_pred             HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677          187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI  266 (593)
Q Consensus       187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~  266 (593)
                         +..++.+|..|.||||+|+..+.                                 .          ..++.+++++
T Consensus       130 ---~~~~~~~~~~g~t~L~~A~~~~~---------------------------------~----------~~~~~~~v~~  163 (201)
T 3hra_A          130 ---REDIDFQNDFGYTALIEAVGLRE---------------------------------G----------NQLYQDIVKL  163 (201)
T ss_dssp             ---CCCTTCCCTTSCCHHHHHHHSSC---------------------------------C----------SHHHHHHHHH
T ss_pred             ---CCCcCCCCCCCCCHHHHHHHhcc---------------------------------c----------hhhHHHHHHH
Confidence               23445667777777777766543                                 0          0123789999


Q ss_pred             HHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhccc
Q 007677          267 LIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIK  306 (593)
Q Consensus       267 Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  306 (593)
                      |+++|+++ +.+|.. |+||||+|+++|+.+++++|+++|
T Consensus       164 Ll~~ga~~-~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          164 LMENGADQ-SIKDNS-GRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHHTTCCT-TCCCTT-SCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHHCCCCC-CccCCC-CCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999998 788998 999999999999999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=4.4e-33  Score=282.68  Aligned_cols=238  Identities=15%  Similarity=0.086  Sum_probs=186.7

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccc----------------cCCCCCcHHHHHHHcCCHHHHHHHHH
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE----------------ITNHGKTALHVAAEANRIDFVKKLLK   86 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------------~~~~g~T~Lh~Aa~~g~~~~v~~Ll~   86 (593)
                      ....|..|.++++     |+.++++.|+++ +.+.+..                ......+.+|.|+..+..++++.|++
T Consensus        45 i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~  118 (327)
T 1sw6_A           45 IMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN  118 (327)
T ss_dssp             CEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------------------------CHHHHHHHHHHHCTT
T ss_pred             cccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHh
Confidence            3467888999987     999999999987 5443320                01122334688888889999999998


Q ss_pred             cCCchhhhc-hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHHhcc--cc
Q 007677           87 RMSAEDLAK-QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR---TEVVEFLYRETK--NS  160 (593)
Q Consensus        87 ~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~~--~~  160 (593)
                      .  +++++. +|..|+||||+|+..|+.++|++|+++|+++ +.+|..|+||||+|+..|+   .++++.|++.+.  .+
T Consensus       119 ~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          119 T--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             S--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             c--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            8  899999 8999999999999999999999999999997 7999999999999999998   788888888874  77


Q ss_pred             cCCcchhHHHHHHHH----cCCHHHHHHHHHhc-------------------chhhhccccCCccHHHHHHhcCCCcccc
Q 007677          161 LKDDDCIELLVQLIE----TGLYAVALQLLHDH-------------------RYLATKRAKNKETALHVLARKNLGDKDR  217 (593)
Q Consensus       161 ~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~-------------------~~~~~~~d~~g~t~Lh~a~~~~~~~~~~  217 (593)
                      ..+..|.||||+|+.    .|+.++++.|++..                   +..++.+|..|.||||.|+.        
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~--------  267 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD--------  267 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS--------
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH--------
Confidence            789999999999999    89999999999873                   56677889999999999873        


Q ss_pred             cchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcC
Q 007677          218 KNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNR  294 (593)
Q Consensus       218 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~  294 (593)
                              +++|++.  +++.     +|..|+||||+|++.|+.+++++|+++|+++ +.+|.. |+||||+|+++|
T Consensus       268 --------~~~Ll~~--~~n~-----~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~-G~TpL~~A~~~g  327 (327)
T 1sw6_A          268 --------LKWIIAN--MLNA-----QDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKS-GLRPVDFGAGLE  327 (327)
T ss_dssp             --------HHHHHHH--TTTC-----CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-TCCCTT-SCCGGGGTCC--
T ss_pred             --------HHHHHHh--CCCC-----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCC-CCCHHHHHHhcC
Confidence                    5667766  3443     3478999999999999999999999999998 899999 999999998765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=4.9e-31  Score=247.84  Aligned_cols=174  Identities=21%  Similarity=0.296  Sum_probs=154.4

Q ss_pred             HHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 007677           10 QLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS   89 (593)
Q Consensus        10 ~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~   89 (593)
                      .++.+..... ...+..|..|+||||.|+..|+.++++.|++. +.+++.+ +..|.||||+|+..|+.+++++|++.. 
T Consensus        20 ~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~-   95 (201)
T 3hra_A           20 KVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHA-   95 (201)
T ss_dssp             HHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHS-
T ss_pred             HHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcc-
Confidence            3444444432 23347789999999999999999999999987 8888887 899999999999999999999999765 


Q ss_pred             chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCC-----HHHHHHHHHhcc-cccC
Q 007677           90 AEDLAKQNKIGCTAVFYAVASESVELVKATMKGN-EGIATLPDNDGMLPIVRAASLGR-----TEVVEFLYRETK-NSLK  162 (593)
Q Consensus        90 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~~iv~~Ll~~~~-~~~~  162 (593)
                      +.+++.+|..|.||||+|+..|+.+++++|+++| .++ +.+|..|.||||+|+..++     .+++++|+++++ .+..
T Consensus        96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~  174 (201)
T 3hra_A           96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK  174 (201)
T ss_dssp             CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence            7789999999999999999999999999999999 564 8899999999999999998     999999999998 7888


Q ss_pred             CcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          163 DDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       163 ~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      |..|.||||.|+..|+.++++.|+++
T Consensus       175 ~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          175 DNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            88999999999999999999988875

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=3.9e-33  Score=269.42  Aligned_cols=216  Identities=16%  Similarity=0.094  Sum_probs=165.3

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCc---cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCC
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYE---GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGC  101 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~---~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~  101 (593)
                      .+|.+|+||||.|+..|+.++++.|++...   .+++.+ +..|.||||+|+..|+.++|++|+++  +++++.+|..|.
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~   79 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGN   79 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCC
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCC
Confidence            568999999999999999999999988643   367776 88999999999999999999999998  899999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCC-----CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHH
Q 007677          102 TAVFYAVASESVELVKATMKGNEGI-----ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIE  175 (593)
Q Consensus       102 TpLh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~  175 (593)
                      ||||+|+..|+.+++++|++.+++.     ....+..|.||||+|+..|+.+++++|+++++ .+..+.           
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-----------  148 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-----------  148 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-----------
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----------
Confidence            9999999999999999999998642     36788899999999999999999999999876 444433           


Q ss_pred             cCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHH
Q 007677          176 TGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDA  255 (593)
Q Consensus       176 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~A  255 (593)
                                            ..|.||||+|+..++          .+++++|++.|++++..+     ..|.||||+|
T Consensus       149 ----------------------~~g~tpL~~A~~~~~----------~~~v~~Ll~~ga~~~~~~-----~~g~tpl~~A  191 (236)
T 1ikn_D          149 ----------------------CNGRTALHLAVDLQN----------PDLVSLLLKCGADVNRVT-----YQGYSPYQLT  191 (236)
T ss_dssp             ----------------------TTCCCHHHHHHHTTC----------HHHHHHHHTTTCCSCCCC-----TTCCCGGGGC
T ss_pred             ----------------------CCCCCHHHHHHHcCC----------HHHHHHHHHcCCCCCccc-----CCCCCHHHHH
Confidence                                  144455555554444          445555555544444332     5567777777


Q ss_pred             HHcCcHHHHHHHHHHCCCcc-ccccCCCCchHHHHHHH
Q 007677          256 ADRGNVQFLSILIREYPDLM-WKADKKDNYTIFHIAVK  292 (593)
Q Consensus       256 a~~g~~~~v~~Ll~~~~~~~-~~~d~~~g~t~Lh~Av~  292 (593)
                      +..|+.+++++|+++|++.. ...+.. |.|+.+.+..
T Consensus       192 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~-~~~~~~~~~~  228 (236)
T 1ikn_D          192 WGRPSTRIQQQLGQLTLENLQMLPESE-DEESYDTESE  228 (236)
T ss_dssp             TTSSCHHHHHHHHTTSCGGGSSCCCCC-TTTCCCCC--
T ss_pred             HccCchHHHHHHHHcchhhhhcCCccc-hHHHHhhhcc
Confidence            77788888888888888763 356666 8887766544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=7.6e-31  Score=256.60  Aligned_cols=196  Identities=17%  Similarity=0.121  Sum_probs=172.9

Q ss_pred             ccchHhHHHHHcCCHHHH----HHHHhhCcccccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhc---
Q 007677           29 TRRLKLYRAALNGDWAVA----KDIYDKYEGEIGV---EITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAK---   95 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v----~~Ll~~~~~~~~~---~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~---   95 (593)
                      .|+||||.|+..|+.+.+    +.+++. +.+++.   ..|..|.||||+|+..   |+.++|++|++.  +++++.   
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~   77 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKP   77 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhh
Confidence            478999999999999855    444444 788887   2389999999999999   999999999999  776653   


Q ss_pred             --------hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC-------------CCCHHHHHHHcCCHHHHHHHH
Q 007677           96 --------QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDND-------------GMLPIVRAASLGRTEVVEFLY  154 (593)
Q Consensus        96 --------~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~iv~~Ll  154 (593)
                              +|..|.||||+|+..|+.+++++|+++|+++ +.++..             |.||||+|+..|+.+++++|+
T Consensus        78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  156 (256)
T 2etb_A           78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL  156 (256)
T ss_dssp             GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                    4478999999999999999999999999997 666665             999999999999999999999


Q ss_pred             H---hcc-cccCCcchhHHHHHHHH--cCCHH-------HHHHHHHhcchhh-------hccccCCccHHHHHHhcCCCc
Q 007677          155 R---ETK-NSLKDDDCIELLVQLIE--TGLYA-------VALQLLHDHRYLA-------TKRAKNKETALHVLARKNLGD  214 (593)
Q Consensus       155 ~---~~~-~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~a~~~~~~~  214 (593)
                      +   +++ .+..|..|.||||+|+.  .++.+       +++.|++. +..+       +.+|..|.||||+|+..++  
T Consensus       157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~--  233 (256)
T 2etb_A          157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGK--  233 (256)
T ss_dssp             HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--
T ss_pred             hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCC--
Confidence            9   777 88899999999999999  78888       99999998 5666       8899999999999999999  


Q ss_pred             ccccchhHHHHHHHHHHHHHhcChH
Q 007677          215 KDRKNKEAETLVESLWEEVILLSKQ  239 (593)
Q Consensus       215 ~~~~~~~~~~~~~~L~~~~~~~~~~  239 (593)
                              .++++.|+++|.+....
T Consensus       234 --------~~~v~~Ll~~g~~~~~~  250 (256)
T 2etb_A          234 --------IEIFRHILQREFSGAAA  250 (256)
T ss_dssp             --------HHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHhCCCCCCCc
Confidence                    99999999999876543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.2e-30  Score=257.71  Aligned_cols=201  Identities=18%  Similarity=0.162  Sum_probs=170.7

Q ss_pred             CccccccchHhHHHHHcCCHHHHHHHHhh---Ccccccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchh--
Q 007677           24 PAETITRRLKLYRAALNGDWAVAKDIYDK---YEGEIGV---EITNHGKTALHVAAEA---NRIDFVKKLLKRMSAED--   92 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~---~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~--   92 (593)
                      +..|..|+||||.|+..|+.+.|+.|++.   .+.+++.   ..+..|.||||+|+..   |+.++|++|++.  +++  
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~--ga~~~   84 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV--ARKTD   84 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--HHHTT
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--hcccc
Confidence            46799999999999999999999999873   3444431   3378999999999987   999999999998  654  


Q ss_pred             -----hhc----hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC--------------CCCCHHHHHHHcCCHHH
Q 007677           93 -----LAK----QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDN--------------DGMLPIVRAASLGRTEV  149 (593)
Q Consensus        93 -----~~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~i  149 (593)
                           ++.    +|..|.||||+|+..|+.+++++|+++|+++ +.++.              .|.||||+|+..|+.++
T Consensus        85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  163 (273)
T 2pnn_A           85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI  163 (273)
T ss_dssp             CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred             chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence                 333    6779999999999999999999999999997 66665              79999999999999999


Q ss_pred             HHHHHH---hcc-cccCCcchhHHHHHHHHcCC---------HHHHHHHHHhcchhhh-------ccccCCccHHHHHHh
Q 007677          150 VEFLYR---ETK-NSLKDDDCIELLVQLIETGL---------YAVALQLLHDHRYLAT-------KRAKNKETALHVLAR  209 (593)
Q Consensus       150 v~~Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~a~~  209 (593)
                      +++|++   .++ .+..|..|.||||+|+..++         .++++.|++. +..++       .+|..|.||||+|+.
T Consensus       164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHH
Confidence            999999   777 88899999999999999988         7899999998 55554       589999999999999


Q ss_pred             cCCCcccccchhHHHHHHHHHHHHH-hcCh
Q 007677          210 KNLGDKDRKNKEAETLVESLWEEVI-LLSK  238 (593)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~  238 (593)
                      .++          .+++++|+++|+ ++..
T Consensus       243 ~g~----------~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          243 SGK----------IGVLAYILQREIHEPEC  262 (273)
T ss_dssp             TTC----------HHHHHHHHHHHTC----
T ss_pred             hCh----------HHHHHHHHHCCCCCchh
Confidence            999          999999999998 4443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=5e-31  Score=257.88  Aligned_cols=196  Identities=14%  Similarity=0.073  Sum_probs=152.0

Q ss_pred             CCCcHHHHHHHcCCHH----HHHHHHHcCCchhhhc----hhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCCc----
Q 007677           64 HGKTALHVAAEANRID----FVKKLLKRMSAEDLAK----QNKIGCTAVFYAVAS---ESVELVKATMKGNEGIAT----  128 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~----  128 (593)
                      .|+||||.|++.|+.+    ++++|++.  +.+++.    +|..|+||||+|+..   |+.+++++|++.|++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            4789999999999997    55677777  788998    899999999999999   999999999999877521    


Q ss_pred             ------cCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcc-------------hhHHHHHHHHcCCHHHHHHHHHh
Q 007677          129 ------LPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDD-------------CIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       129 ------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                            .+|..|.||||+|+..|+.+++++|+++++ .+..+..             |.||||.|+..|+.++++.|++.
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  234789999999999999999999999998 6666665             99999999999999999999995


Q ss_pred             --cchhhhccccCCccHHHHHHh--cCCCcccccchhHHH-------HHHHHHHHHHhcChHHH--HHHhhcchhHHHHH
Q 007677          189 --HRYLATKRAKNKETALHVLAR--KNLGDKDRKNKEAET-------LVESLWEEVILLSKQEI--WELIEQPRELIHDA  255 (593)
Q Consensus       189 --~~~~~~~~d~~g~t~Lh~a~~--~~~~~~~~~~~~~~~-------~~~~L~~~~~~~~~~~~--~~~~~~g~tpLh~A  255 (593)
                        .+.+++.+|.+|+||||+|+.  .++          .+       +++.|++.|++++....  +.+|..|.||||+|
T Consensus       159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~----------~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A  228 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLHALVMIADNS----------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA  228 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHHHHHHHCCSC----------HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred             cccCCCcCccCCCCCCHHHHHHHcccCC----------chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence              588889999999999999998  554          33       66666666655521000  01123444444444


Q ss_pred             HHcCcHHHHHHHHHHC
Q 007677          256 ADRGNVQFLSILIREY  271 (593)
Q Consensus       256 a~~g~~~~v~~Ll~~~  271 (593)
                      ++.|+.+++++|++++
T Consensus       229 ~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          229 AKEGKIEIFRHILQRE  244 (256)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHhCC
Confidence            4444444444444444

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.4e-30  Score=257.28  Aligned_cols=210  Identities=14%  Similarity=0.052  Sum_probs=152.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--Cchhhh----chhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCC-----
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRM--SAEDLA----KQNKIGCTAVFYAVAS---ESVELVKATMKGNEGIA-----  127 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~-----  127 (593)
                      |..|+||||.|++.|+.++|+.|++..  .+.+++    .+|..|+||||+|+..   |+.+++++|+++|++..     
T Consensus        10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~   89 (273)
T 2pnn_A           10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF   89 (273)
T ss_dssp             -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred             CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence            889999999999999999999999851  134444    4588999999999987   99999999999986521     


Q ss_pred             -----ccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCc--------------chhHHHHHHHHcCCHHHHHHHHH
Q 007677          128 -----TLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDD--------------DCIELLVQLIETGLYAVALQLLH  187 (593)
Q Consensus       128 -----~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~  187 (593)
                           ...|..|.||||+|+..|+.+++++|+++++ .+..+.              .|.||||.|+..|+.++++.|++
T Consensus        90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  169 (273)
T 2pnn_A           90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ  169 (273)
T ss_dssp             HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                 1256789999999999999999999999998 666665              79999999999999999999999


Q ss_pred             h--cchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHH--HHHHhhcchhHHHHHHHcCcHHH
Q 007677          188 D--HRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE--IWELIEQPRELIHDAADRGNVQF  263 (593)
Q Consensus       188 ~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~g~tpLh~Aa~~g~~~~  263 (593)
                      .  .+.+++.+|.+|+||||+|+..++... .......++++.|++.|++++...  ....|..|.||||+|++.|+.++
T Consensus       170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~-~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i  248 (273)
T 2pnn_A          170 NSWQPADISARDSVGNTVLHALVEVADNTV-DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV  248 (273)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccCCCCceeeCCCCCcHHHHHHHccCcch-hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence            4  478889999999999999998775110 000111345555555555544200  00011334444444444444444


Q ss_pred             HHHHHHHCC
Q 007677          264 LSILIREYP  272 (593)
Q Consensus       264 v~~Ll~~~~  272 (593)
                      +++|+++|+
T Consensus       249 v~~Ll~~ga  257 (273)
T 2pnn_A          249 LAYILQREI  257 (273)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHCCC
Confidence            444444443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.2e-29  Score=231.01  Aligned_cols=153  Identities=27%  Similarity=0.340  Sum_probs=146.7

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ++|+.||+.|+.++|+.|++. +++++.+ |.+|.||||+|+..|+.+++++|++.  +++++.+|..|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcC
Confidence            469999999999999999986 8999987 99999999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDH  189 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  189 (593)
                      +.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.++ .+..|..|.||||+|+..|+.++++.|++++
T Consensus        82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999997 8899999999999999999999999999999 8889999999999999999999999999873

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=7.3e-30  Score=250.19  Aligned_cols=198  Identities=18%  Similarity=0.147  Sum_probs=172.4

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHh---hCccccccc---cCCCCCcHHHHHH---HcCCHHHHHHHHHcCCchh-----
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYD---KYEGEIGVE---ITNHGKTALHVAA---EANRIDFVKKLLKRMSAED-----   92 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~---~~~~~~~~~---~~~~g~T~Lh~Aa---~~g~~~~v~~Ll~~~~~~~-----   92 (593)
                      +..++++||.|+..|+.+.++.|++   +.+.+++..   .+..|.||||+|+   +.|+.++|++|++.  +++     
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI--AEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH--HHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh--cccccchH
Confidence            5678999999999999997776666   336666654   1377999999999   77999999999998  543     


Q ss_pred             ------hhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC--------------CCCCCHHHHHHHcCCHHHHHH
Q 007677           93 ------LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD--------------NDGMLPIVRAASLGRTEVVEF  152 (593)
Q Consensus        93 ------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~iv~~  152 (593)
                            ++.+|..|+||||+|+..|+.++|++|+++|+++ +.++              ..|.||||+|+..|+.+++++
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~  158 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY  158 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence                  4455668999999999999999999999999997 6666              689999999999999999999


Q ss_pred             HHH---hcc-cccCCcchhHHHHHHHHcCC---------HHHHHHHHHhcchhh-------hccccCCccHHHHHHhcCC
Q 007677          153 LYR---ETK-NSLKDDDCIELLVQLIETGL---------YAVALQLLHDHRYLA-------TKRAKNKETALHVLARKNL  212 (593)
Q Consensus       153 Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~a~~~~~  212 (593)
                      |++   .++ .+..|..|.||||+|+..++         .++++.|++. +..+       +.+|.+|.||||+|+..|+
T Consensus       159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            999   777 88899999999999999888         6899999998 5555       6799999999999999999


Q ss_pred             CcccccchhHHHHHHHHHHHHHhcCh
Q 007677          213 GDKDRKNKEAETLVESLWEEVILLSK  238 (593)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~~~~~~~~  238 (593)
                                .++++.|+++|.+...
T Consensus       238 ----------~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          238 ----------IGIFQHIIRREIADAA  253 (260)
T ss_dssp             ----------HHHHHHHHHHHHHHHC
T ss_pred             ----------HHHHHHHHHhCCCccc
Confidence                      9999999999987654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=5.4e-31  Score=270.31  Aligned_cols=261  Identities=11%  Similarity=-0.031  Sum_probs=152.6

Q ss_pred             cchHhHHHHH-cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch---hhhchhcCCChHHH
Q 007677           30 RRLKLYRAAL-NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE---DLAKQNKIGCTAVF  105 (593)
Q Consensus        30 ~~t~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~d~~g~TpLh  105 (593)
                      +.++++.|+. .++.+.++.++++         +.+++||||+|++.|+.++|++|+++  ++   ..+..|..|.||||
T Consensus        65 ~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~--ga~~~~~~~~~~~~~tpL~  133 (376)
T 2aja_A           65 QLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCLL--LTSDEIVKVIQAENYQAFR  133 (376)
T ss_dssp             HHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHHc--CCcHHHHHHhccCCCCHHH
Confidence            3456666655 3566666666654         23345777777777777777777776  33   12233445667777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCC--CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccc--CCcchhHHHHHHH-HcCCH
Q 007677          106 YAVASESVELVKATMKGNEGI--ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSL--KDDDCIELLVQLI-ETGLY  179 (593)
Q Consensus       106 ~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~--~~~~g~t~L~~A~-~~~~~  179 (593)
                      +|++.|+.++|++|+++|++.  .+..+.+ .||||+|+..|+.+++++|+++++ .+.  .+..|.||||.|+ ..|+.
T Consensus       134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~  212 (376)
T 2aja_A          134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH  212 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred             HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence            777777777777777777541  0122222 677777777777777777777776 333  5666777777777 77777


Q ss_pred             HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcC
Q 007677          180 AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRG  259 (593)
Q Consensus       180 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g  259 (593)
                      ++++.|++. +.       .|.||||+|+..|+          .+++++|++.|.+++..         .++++.|+..|
T Consensus       213 eiv~~Ll~~-ga-------~~~taL~~Aa~~g~----------~evv~lL~~~ga~~~~~---------~~~l~~A~~~g  265 (376)
T 2aja_A          213 NVINFLLDC-PV-------MLAYAEIHEFEYGE----------KYVNPFIARHVNRLKEM---------HDAFKLSNPDG  265 (376)
T ss_dssp             HHHHHHTTS-HH-------HHHHHHHCTTTTTT----------TTHHHHHHHHHHHHHHH---------HTTTTTTSSSS
T ss_pred             HHHHHHHhC-CC-------ccchHHHHHHHCCC----------HHHHHHHHhcCcccccc---------cHHHHHHHHCC
Confidence            777777764 32       26677777777776          66777777777655432         23444444444


Q ss_pred             cH---------------------------HHHHHHHHHCCC-c---cccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          260 NV---------------------------QFLSILIREYPD-L---MWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       260 ~~---------------------------~~v~~Ll~~~~~-~---~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      +.                           +.+++|++.... .   ....+.. +.||||+|+..|+.+++++|++.|. 
T Consensus       266 ~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~-~~~~L~~A~~~g~~e~v~lLl~~~~-  343 (376)
T 2aja_A          266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELLRLALRLGNQGACALLLSIPS-  343 (376)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC-CCHHHHHHHHHTCTTHHHHHTTSHH-
T ss_pred             ChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC-ccHHHHHHHHcCcHHHHHHHHcChH-
Confidence            43                           344444432110 0   0112234 7899999999999999999998753 


Q ss_pred             cccccccccCCCCchhHhhhhhCCCcccc
Q 007677          309 ADLMVDCTDEKGNNILHLAGELAPQHRLN  337 (593)
Q Consensus       309 ~~~lin~~D~~G~T~LH~A~~~~~~~~~~  337 (593)
                            .+|..|+|++.+|-..|..++.+
T Consensus       344 ------v~~~~~~~~~~~~~~~~~~~~~~  366 (376)
T 2aja_A          344 ------VLALTKANNYYINETGGRLDLRA  366 (376)
T ss_dssp             ------HHHSCC-----------------
T ss_pred             ------HHHHHHHhccccccccccccHHH
Confidence                  57889999999999988876543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.2e-29  Score=226.70  Aligned_cols=158  Identities=25%  Similarity=0.261  Sum_probs=146.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      ++|+.||+.|+.++|+.|+++  |+++|.+|..|+||||+|+..|+.++++.|+++|+++ +.+|.+|.||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            479999999999999999999  8999999999999999999999999999999999997 8899999999999999999


Q ss_pred             HHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHH
Q 007677          147 TEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL  225 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~  225 (593)
                      .+++++|+++++ .+..|.+|.||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|+..++          .++
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~----------~~i  151 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGN----------EEV  151 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC----------HHH
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC----------HHH
Confidence            999999999999 888999999999999999999999999998 67788999999999999999999          899


Q ss_pred             HHHHHHHHHhcCh
Q 007677          226 VESLWEEVILLSK  238 (593)
Q Consensus       226 ~~~L~~~~~~~~~  238 (593)
                      +++|+++|++++.
T Consensus       152 v~~Ll~~GA~ie~  164 (169)
T 4gpm_A          152 VKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHTC------
T ss_pred             HHHHHHCCCCcCC
Confidence            9999999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=2.6e-29  Score=246.23  Aligned_cols=208  Identities=14%  Similarity=0.042  Sum_probs=152.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHH----cCCchhhhchh----cCCChHHHHHH---HcCCHHHHHHHHhcCCCC----
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLK----RMSAEDLAKQN----KIGCTAVFYAV---ASESVELVKATMKGNEGI----  126 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~d----~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~~----  126 (593)
                      +..|+|+||.|++.|+.+.|+.|++    .  +.+++.++    ..|.||||+|+   +.|+.+++++|++.|++.    
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            5678999999999999996555555    6  67777666    67999999999   779999999999987542    


Q ss_pred             ------CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCC--------------cchhHHHHHHHHcCCHHHHHHH
Q 007677          127 ------ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKD--------------DDCIELLVQLIETGLYAVALQL  185 (593)
Q Consensus       127 ------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~--------------~~g~t~L~~A~~~~~~~~v~~L  185 (593)
                            ....|..|.||||+|+..|+.+++++|+++++ .+..+              ..|.||||.|+..|+.++++.|
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                  13455689999999999999999999999998 66666              5799999999999999999999


Q ss_pred             HHh--cchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHH--HHHHhhcchhHHHHHHHcCcH
Q 007677          186 LHD--HRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE--IWELIEQPRELIHDAADRGNV  261 (593)
Q Consensus       186 l~~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~g~tpLh~Aa~~g~~  261 (593)
                      ++.  .+.+++.+|.+|+||||+|+..++... .......++++.|++.|++++...  ....|..|.||||+|++.|+.
T Consensus       160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNTVLHALVAIADNTR-ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSH-HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HhccccCCCCcccCCCCCcHHHHHHHhccCch-hHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            994  478889999999999999998765100 000111356666666666553200  001123444444444444444


Q ss_pred             HHHHHHHHHCC
Q 007677          262 QFLSILIREYP  272 (593)
Q Consensus       262 ~~v~~Ll~~~~  272 (593)
                      +++++|+++++
T Consensus       239 ~~v~~Ll~~g~  249 (260)
T 3jxi_A          239 GIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhCC
Confidence            44444444443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=2.7e-28  Score=223.23  Aligned_cols=169  Identities=17%  Similarity=0.129  Sum_probs=150.5

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      +.+|||.|+..|+.+.++.++++.+..++.+ +..|.||||+|+..|+.++|++|+++  +++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHH
Confidence            3589999999999999999999876667776 89999999999999999999999999  89999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      .|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..++.++++.|+++
T Consensus        79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999997 8899999999999999999999999999998 888999999999999999999999999998


Q ss_pred             cchhhhccccCCccH
Q 007677          189 HRYLATKRAKNKETA  203 (593)
Q Consensus       189 ~~~~~~~~d~~g~t~  203 (593)
                       +.....++..|.||
T Consensus       158 -~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 -ILKLFQSNLVPADP  171 (172)
T ss_dssp             -HHHHSCC-------
T ss_pred             -HHHHhcccCCCCCC
Confidence             45555667777766

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=1.1e-27  Score=217.95  Aligned_cols=159  Identities=19%  Similarity=0.178  Sum_probs=150.1

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      .|.||||.|+..|+.+.++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence            478999999999999999999998 6778877 89999999999999999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLH  187 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  187 (593)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..|+.++++.|++
T Consensus        78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999997 7899999999999999999999999999998 78899999999999999999999999999


Q ss_pred             hcchh
Q 007677          188 DHRYL  192 (593)
Q Consensus       188 ~~~~~  192 (593)
                      +....
T Consensus       157 ~~~~~  161 (167)
T 3v31_A          157 HLLKL  161 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            85443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=9e-28  Score=223.95  Aligned_cols=159  Identities=18%  Similarity=0.192  Sum_probs=151.8

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      .+|..|+||||.|+..|+.++++.|++. +.+++.+ +..|.||||+|+..|+.+++++|++.  +++++.+|..|.|||
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPL  105 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence            5699999999999999999999999997 7788876 88999999999999999999999999  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..|+.++++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~  184 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK  184 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence            9999999999999999999997 8899999999999999999999999999998 8888999999999999999999999


Q ss_pred             HHHHh
Q 007677          184 QLLHD  188 (593)
Q Consensus       184 ~Ll~~  188 (593)
                      .|++.
T Consensus       185 ~Ll~~  189 (192)
T 2rfm_A          185 IFTEV  189 (192)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99987

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=5.1e-28  Score=239.24  Aligned_cols=192  Identities=19%  Similarity=0.238  Sum_probs=174.1

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCcc-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch-hhhchhcCCChHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEG-EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE-DLAKQNKIGCTAV  104 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~TpL  104 (593)
                      +....+++|.|+..|+.+.++.+++.... .++.+ |.+|.||||+|+..|+.++|++|++.  ++ +++.+|..|.|||
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL  149 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPI  149 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHH
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHH
Confidence            33456788999999999999998876221 26665 89999999999999999999999999  66 8999999999999


Q ss_pred             HHHH-----HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCC
Q 007677          105 FYAV-----ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGL  178 (593)
Q Consensus       105 h~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~  178 (593)
                      |+|+     ..++.++++.|++.|... ...+..|.||||+|+..|+.+++++|++.++ .+..|..|.||||+|+..|+
T Consensus       150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          150 MLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             HHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence            9999     678999999999999775 7788999999999999999999999999999 88899999999999999999


Q ss_pred             HHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 007677          179 YAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE  232 (593)
Q Consensus       179 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~  232 (593)
                      .++++.|++..+.+++.+|.+|.||||+|+..++          .++++.|+++
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~----------~~iv~~Ll~~  272 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ----------SEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC----------HHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC----------HHHHHHHHhc
Confidence            9999999996688889999999999999999999          8999998876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=2.7e-28  Score=241.19  Aligned_cols=192  Identities=16%  Similarity=0.219  Sum_probs=143.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA--  142 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--  142 (593)
                      +.+++|.|+..|+.+.++.+++...+..+|.+|.+|+||||+|+..|+.+++++|++.|+...+..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            467888999999999999998873223388899999999999999999999999999998334888999999999998  


Q ss_pred             ---HcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677          143 ---SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN  219 (593)
Q Consensus       143 ---~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~  219 (593)
                         ..++.+++++|++.+.                                 .....|..|+||||+|+..++       
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~---------------------------------~~~~~~~~g~tpLh~A~~~g~-------  195 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGN---------------------------------INAKASQAGQTALMLAVSHGR-------  195 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSC---------------------------------TTCCCTTTCCCHHHHHHHTTC-------
T ss_pred             HhhhhhhHHHHHHHHHcCC---------------------------------CccccCCCCCCHHHHHHHcCC-------
Confidence               4566777777776654                                 223344555566666555555       


Q ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHH-HCCCccccccCCCCchHHHHHHHcCchhH
Q 007677          220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIR-EYPDLMWKADKKDNYTIFHIAVKNRLEDL  298 (593)
Q Consensus       220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~t~Lh~Av~~~~~~i  298 (593)
                         .++++.|++.|++++..+     ..|.||||+|+..|+.+++++|++ .++++ +.+|.. |+||||+|+.+|+.++
T Consensus       196 ---~~~v~~Ll~~gad~n~~d-----~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~-g~TpL~~A~~~g~~~i  265 (276)
T 4hbd_A          196 ---VDVVKALLACEADVNVQD-----DDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRD-GSTALMVALDAGQSEI  265 (276)
T ss_dssp             ---HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTT-SCCHHHHHHHHTCHHH
T ss_pred             ---HHHHHHHHhCCCCCCCCC-----CCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCC-CCCHHHHHHHcCCHHH
Confidence               555555555555554433     566777777777788888888888 67777 677887 8888888888888888


Q ss_pred             HHHHhccc
Q 007677          299 FKFIYDIK  306 (593)
Q Consensus       299 v~~Ll~~~  306 (593)
                      +++|++++
T Consensus       266 v~~Ll~~~  273 (276)
T 4hbd_A          266 ASMLYSRM  273 (276)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcc
Confidence            88888764

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=3.1e-27  Score=220.35  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=153.0

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 007677           57 IGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGML  136 (593)
Q Consensus        57 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t  136 (593)
                      ++.+ |..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus        28 ~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t  103 (192)
T 2rfm_A           28 RNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKT  103 (192)
T ss_dssp             HTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCC
T ss_pred             HhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCc
Confidence            4445 88999999999999999999999999  8999999999999999999999999999999999996 889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcc
Q 007677          137 PIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDK  215 (593)
Q Consensus       137 pL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~  215 (593)
                      |||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +..++.+|..|.||||+|+..++   
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~---  179 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGR---  179 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTC---
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCc---
Confidence            9999999999999999999998 888999999999999999999999999998 67788899999999999999999   


Q ss_pred             cccchhHHHHHHHHHHHH
Q 007677          216 DRKNKEAETLVESLWEEV  233 (593)
Q Consensus       216 ~~~~~~~~~~~~~L~~~~  233 (593)
                             .++++.|++.+
T Consensus       180 -------~~~v~~Ll~~~  190 (192)
T 2rfm_A          180 -------QEVIKIFTEVR  190 (192)
T ss_dssp             -------HHHHHHHHHHH
T ss_pred             -------HHHHHHHHhcc
Confidence                   89999998875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=5e-27  Score=214.19  Aligned_cols=159  Identities=24%  Similarity=0.264  Sum_probs=148.0

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      .....+.++||.|+..|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|.|||
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L   84 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPL   84 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHH
Confidence            4467788999999999999999999997 7888877 89999999999999999999999999  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..|..|.||+|.|+..|+.++++
T Consensus        85 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  163 (169)
T 2y1l_E           85 RLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE  163 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence            9999999999999999999997 7899999999999999999999999999998 7888999999999999999999999


Q ss_pred             HHHHh
Q 007677          184 QLLHD  188 (593)
Q Consensus       184 ~Ll~~  188 (593)
                      .|++.
T Consensus       164 ~L~~~  168 (169)
T 2y1l_E          164 ILQKL  168 (169)
T ss_dssp             HHHTC
T ss_pred             HHHHc
Confidence            99875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2.6e-29  Score=241.16  Aligned_cols=200  Identities=15%  Similarity=0.108  Sum_probs=147.3

Q ss_pred             HHHHhhCcccccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCC
Q 007677           47 KDIYDKYEGEIGV--EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE  124 (593)
Q Consensus        47 ~~Ll~~~~~~~~~--~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~  124 (593)
                      +.|+++ +.+++.  ..+.+|.||||+|+..|+.++|++|++.  +++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus         2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga   78 (229)
T 2vge_A            2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            455655 344332  2255677889999999999999999988  78888888999999999999999999999999988


Q ss_pred             CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccc-cCCccH
Q 007677          125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRA-KNKETA  203 (593)
Q Consensus       125 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~t~  203 (593)
                      ++ +.+|..|.||||+|+..|+.+++++|++.++                                 .++.++ .+|+| 
T Consensus        79 ~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga---------------------------------~~~~~~~~~g~t-  123 (229)
T 2vge_A           79 NV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA---------------------------------AIFATTLSDGAT-  123 (229)
T ss_dssp             CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC---------------------------------CTTCCCSSTTCC-
T ss_pred             CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------------------CcccccCCCCCC-
Confidence            86 7788889999999999999888888887764                                 112222 34444 


Q ss_pred             HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHH--HHcCcHHHHHHHHHHCCCccccccCC
Q 007677          204 LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDA--ADRGNVQFLSILIREYPDLMWKADKK  281 (593)
Q Consensus       204 Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~  281 (593)
                                                                     |||+|  +..|+.+++++|+++|+++ +..|..
T Consensus       124 -----------------------------------------------pL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~  155 (229)
T 2vge_A          124 -----------------------------------------------AFEKCDPYREGYADCATYLADVEQSM-GLMNSG  155 (229)
T ss_dssp             -----------------------------------------------TGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGG
T ss_pred             -----------------------------------------------HHHHHHHHhcChHHHHHHHHHcCCCc-ccccCC
Confidence                                                           44444  5556677777777777776 667777


Q ss_pred             CCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccc
Q 007677          282 DNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNV  338 (593)
Q Consensus       282 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~  338 (593)
                       |.||+|.++..+..   ++|++.|++.+  ++.+|..|+||||+|++.|+.++++.
T Consensus       156 -~~~~l~~~~~~~~~---~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          156 -AVYALWDYSAEFGD---ELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             -EEEESSCBCCSSTT---BCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             -chHHHHHHhhcccc---ccCcccccccc--ccccCCCcccHHHHHHHcCCcceeeh
Confidence             88888865554433   57788887754  67899999999999999999887764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.9e-27  Score=210.53  Aligned_cols=154  Identities=24%  Similarity=0.261  Sum_probs=145.0

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      ++.||||.|+..|+.+.++.|+++.+.+++.. +..|.||||+ +..|+.+++++|+++  +++++.+|..|.||||+|+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH
Confidence            35689999999999999999999866678876 8999999999 999999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLH  187 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  187 (593)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. . .+..+..|.||||.|+..|+.++++.|++
T Consensus        77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999996 88999999999999999999999999999 6 78889999999999999999999999987


Q ss_pred             h
Q 007677          188 D  188 (593)
Q Consensus       188 ~  188 (593)
                      +
T Consensus       155 ~  155 (156)
T 1bd8_A          155 H  155 (156)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.7e-29  Score=259.22  Aligned_cols=258  Identities=14%  Similarity=0.057  Sum_probs=171.8

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchh---hhchhcCCCh
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIG-VEITNHGKTALHVAAEANRIDFVKKLLKRMSAED---LAKQNKIGCT  102 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~T  102 (593)
                      +.+++||||.||..|+.++++.|++....... ..++..|.||||+||..|+.++|++|+++  +++   .+..+.+ .|
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~T  165 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YH  165 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CC
Confidence            45567999999999999999999987431111 11255688999999999999999999999  543   2333333 99


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHHH-HcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCH
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATL--PDNDGMLPIVRAA-SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY  179 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~  179 (593)
                      |||+|+..|+.++|++|+++|+++ ..  .|..|.||||+|+ ..|+.+++++|++.++      .|.||||.|+..|+.
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~  238 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEK  238 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTT
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCH
Confidence            999999999999999999999986 44  7888999999999 9999999999999764      489999999999999


Q ss_pred             HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc--hhHHHHHHHHHHHHHhcChHHH---------------H
Q 007677          180 AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN--KEAETLVESLWEEVILLSKQEI---------------W  242 (593)
Q Consensus       180 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~---------------~  242 (593)
                      ++++.|++. +...+.++    ++++.|+..|+.+.....  .....+++.++..+........               .
T Consensus       239 evv~lL~~~-ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g  313 (376)
T 2aja_A          239 YVNPFIARH-VNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA  313 (376)
T ss_dssp             THHHHHHHH-HHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred             HHHHHHHhc-Cccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence            999999987 44444443    366777777763321100  0111122333322211000000               0


Q ss_pred             HHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          243 ELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       243 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      ...+.+.||||+|+..|+.+++++|++.+    ..+|.. |+|++.+|-.+|+.++.+.-+.
T Consensus       314 ~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~-~~~~~~~~~~~~~~~~~~~~~~  370 (376)
T 2aja_A          314 TIPGDANELLRLALRLGNQGACALLLSIP----SVLALT-KANNYYINETGGRLDLRAVALE  370 (376)
T ss_dssp             SSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSC-C---------------------
T ss_pred             CCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHH-HHhccccccccccccHHHHHHH
Confidence            01145679999999999999999999753    456777 9999999999999998876654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=6e-27  Score=211.85  Aligned_cols=155  Identities=20%  Similarity=0.262  Sum_probs=145.9

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      ...||||.|+..|+.+.++.|++. +.+++.+ +..|.||||+|+. |+.+++++|+++  +++++.+|..|.||||+|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhC-CCCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence            456999999999999999999986 7888877 8999999999999 999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAVALQLL  186 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  186 (593)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++  .+..+..|.||||+|+..|+.++++.|+
T Consensus        79 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  157 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ  157 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            999999999999999996 8899999999999999999999999999998  4788999999999999999999999999


Q ss_pred             Hhc
Q 007677          187 HDH  189 (593)
Q Consensus       187 ~~~  189 (593)
                      +++
T Consensus       158 ~~G  160 (162)
T 1ihb_A          158 ANG  160 (162)
T ss_dssp             HTC
T ss_pred             HhC
Confidence            873

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2.5e-27  Score=215.11  Aligned_cols=159  Identities=22%  Similarity=0.218  Sum_probs=147.3

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      -.|.++.++||.|+..|+.+.++.|++..+.+++.. +..|.||||+|+..|+.+++++|+++  +.+++.+|..|.|||
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L   79 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPL   79 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHH
Confidence            347889999999999999999999999877777765 88899999999999999999999999  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..|..|.||+|+|.. ++.++++
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~  157 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQD  157 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred             HHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHH
Confidence            9999999999999999999997 8899999999999999999999999999998 88899999999999877 8899999


Q ss_pred             HHHHh
Q 007677          184 QLLHD  188 (593)
Q Consensus       184 ~Ll~~  188 (593)
                      .|++.
T Consensus       158 ~L~~~  162 (165)
T 3twr_A          158 LLRGD  162 (165)
T ss_dssp             HHHTC
T ss_pred             HHhhc
Confidence            99876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=1.3e-26  Score=211.96  Aligned_cols=163  Identities=15%  Similarity=0.152  Sum_probs=150.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL  144 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  144 (593)
                      +.||||.|+..|+.+++++|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            468999999999999999999994 4458999999999999999999999999999999996 88899999999999999


Q ss_pred             CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677          145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE  223 (593)
Q Consensus       145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~  223 (593)
                      |+.+++++|++++. .+..+..|.||||.|+..|+.++++.|++. +..++.+|.+|.||||+|+..++          .
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------~  148 (172)
T 3v30_A           80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGY----------R  148 (172)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC----------H
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCc----------H
Confidence            99999999999998 888899999999999999999999999998 67778899999999999999999          8


Q ss_pred             HHHHHHHHHHHhcChHH
Q 007677          224 TLVESLWEEVILLSKQE  240 (593)
Q Consensus       224 ~~~~~L~~~~~~~~~~~  240 (593)
                      ++++.|++++.+....+
T Consensus       149 ~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A          149 KVQQVIENHILKLFQSN  165 (172)
T ss_dssp             HHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHHHHHHHhccc
Confidence            99999999998876554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=1.8e-26  Score=209.89  Aligned_cols=160  Identities=13%  Similarity=0.129  Sum_probs=151.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      .|.||||.|+..|+.+++++|++.  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            589999999999999999999999  7889999999999999999999999999999999996 7889999999999999


Q ss_pred             cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhH
Q 007677          144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA  222 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~  222 (593)
                      .|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..++          
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~----------  147 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGY----------  147 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC----------
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCc----------
Confidence            999999999999998 888899999999999999999999999997 67778899999999999999999          


Q ss_pred             HHHHHHHHHHHHhcC
Q 007677          223 ETLVESLWEEVILLS  237 (593)
Q Consensus       223 ~~~~~~L~~~~~~~~  237 (593)
                      .++++.|++++.+..
T Consensus       148 ~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          148 RSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            899999999887643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=2e-26  Score=206.40  Aligned_cols=150  Identities=20%  Similarity=0.195  Sum_probs=140.6

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      ..++||.|+..|+.+.++.|++. +.+++  .+..|.||||+|+..|+.+++++|++.  +++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN-GAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc-CCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH
Confidence            46899999999999999999998 55554  378899999999999999999999998  89999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677          110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL  185 (593)
Q Consensus       110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  185 (593)
                      .|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..|+.++++.|
T Consensus        77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999997 8899999999999999999999999999998 788899999999999999999998875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=4.9e-27  Score=216.34  Aligned_cols=166  Identities=15%  Similarity=0.125  Sum_probs=150.8

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +.++.++||.|+..|+.+.++.|++..+.+++.+ +..|.||||+|+..|+.++|++|++.  +++++.+|..|.||||+
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHL   78 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence            3457789999999999999999999988888877 89999999999999999999999999  89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL  185 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  185 (593)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||++.|+..++.++++.|
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L  157 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA  157 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999997 8899999999999999999999999999999 888999999999999999999999999


Q ss_pred             HHhcchhhhccc
Q 007677          186 LHDHRYLATKRA  197 (593)
Q Consensus       186 l~~~~~~~~~~d  197 (593)
                      ++. +...+..+
T Consensus       158 ~~~-g~~~~~~~  168 (179)
T 3f6q_A          158 EKM-GQNLNRIP  168 (179)
T ss_dssp             HHT-TCCCSCBC
T ss_pred             HHh-hcCcccCC
Confidence            988 44444433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=9.9e-27  Score=210.42  Aligned_cols=159  Identities=18%  Similarity=0.133  Sum_probs=147.1

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677           63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus        63 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  142 (593)
                      ....||||.|+..|+.+++++|+++  +.+++.+|..|+||||+|+. |+.+++++|+++|+++ +.++..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence            3467999999999999999999998  89999999999999999999 9999999999999996 789999999999999


Q ss_pred             HcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677          143 SLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE  221 (593)
Q Consensus       143 ~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~  221 (593)
                      ..|+.+++++|++++. .+..+..|.||||.|+..|+.++++.|++.+....+.+|..|.||||+|+..++         
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~---------  149 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR---------  149 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC---------
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC---------
Confidence            9999999999999998 788899999999999999999999999999766678899999999999999999         


Q ss_pred             HHHHHHHHHHHHHh
Q 007677          222 AETLVESLWEEVIL  235 (593)
Q Consensus       222 ~~~~~~~L~~~~~~  235 (593)
                       .+++++|+++|++
T Consensus       150 -~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          150 -NEVVSLMQANGAG  162 (162)
T ss_dssp             -HHHHHHHHHTC--
T ss_pred             -HHHHHHHHHhCCC
Confidence             8899998887753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.5e-28  Score=234.24  Aligned_cols=182  Identities=16%  Similarity=0.144  Sum_probs=160.0

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT  102 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  102 (593)
                      .+..+..+.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|++.  +++++.+|..|+|
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~t   89 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWT   89 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCC
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCC
Confidence            346678899999999999999999999987 7788887 99999999999999999999999999  8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCH
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA--ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLY  179 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~  179 (593)
                      |||+|+..|+.+++++|+++|+++....+..|.||||+|  +..|+.+++++|++.++ .+..+..|.++++.+...+..
T Consensus        90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~  169 (229)
T 2vge_A           90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD  169 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc
Confidence            999999999999999999999998433457999999999  99999999999999999 888888999998865544432


Q ss_pred             HHHHHHHHhcchh--hhccccCCccHHHHHHhcCC
Q 007677          180 AVALQLLHDHRYL--ATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       180 ~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~a~~~~~  212 (593)
                         +.+++. +..  ++.+|.+|+||||+|+..|+
T Consensus       170 ---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          170 ---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             ---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             ---ccCccc-cccccccccCCCcccHHHHHHHcCC
Confidence               344444 444  56789999999999999987

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=5.3e-26  Score=207.35  Aligned_cols=158  Identities=24%  Similarity=0.246  Sum_probs=146.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      ...+.|+||.|++.|+.++|++|+++  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence            55678999999999999999999999  8999999999999999999999999999999999996 78899999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccch
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNK  220 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~  220 (593)
                      +..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|+++ +..++.+|..|.||||+|+..++        
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~--------  158 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGN--------  158 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCC--------
Confidence            99999999999999998 788899999999999999999999999998 66778899999999999999998        


Q ss_pred             hHHHHHHHHHHHH
Q 007677          221 EAETLVESLWEEV  233 (593)
Q Consensus       221 ~~~~~~~~L~~~~  233 (593)
                        .+++++|++.|
T Consensus       159 --~~~~~~L~~~G  169 (169)
T 2y1l_E          159 --EDLAEILQKLN  169 (169)
T ss_dssp             --HHHHHHHHTC-
T ss_pred             --HHHHHHHHHcC
Confidence              88888887643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1e-26  Score=224.86  Aligned_cols=184  Identities=16%  Similarity=0.179  Sum_probs=118.0

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677           63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus        63 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  142 (593)
                      ..|.||||.|++.|+.+.++.|+++  +++++.. ..|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAH--GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhcc--CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            4588999999999999999999988  7777754 67889999999999999999999998876 788888999999999


Q ss_pred             HcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhH
Q 007677          143 SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA  222 (593)
Q Consensus       143 ~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~  222 (593)
                      ..|+.+++++|+++++                                 +++.+|                         
T Consensus        79 ~~g~~~~v~~Ll~~ga---------------------------------~~~~~d-------------------------  100 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGV---------------------------------NVNAAD-------------------------  100 (239)
T ss_dssp             HHTCHHHHHHHHHHTC---------------------------------CTTCCC-------------------------
T ss_pred             HcCCHHHHHHHHHcCC---------------------------------CCCccC-------------------------
Confidence            9999888888887653                                 122233                         


Q ss_pred             HHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHH--HHcCchhHHH
Q 007677          223 ETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIA--VKNRLEDLFK  300 (593)
Q Consensus       223 ~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~A--v~~~~~~iv~  300 (593)
                                             ..|.||||+|+..|+.+++++|+++|+++ +..|..+++||||+|  +..|+.++++
T Consensus       101 -----------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B          101 -----------------------SDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             -----------------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             -----------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHH
Confidence                                   34466666677777788999999999998 677766244999999  7889999999


Q ss_pred             HHhcccCccccc-----cccccCCCCchhHhhhhhCC
Q 007677          301 FIYDIKPIADLM-----VDCTDEKGNNILHLAGELAP  332 (593)
Q Consensus       301 ~Ll~~~~~~~~l-----in~~D~~G~T~LH~A~~~~~  332 (593)
                      +|++.|++.+..     ....|..|.+++|++.+.|.
T Consensus       157 ~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999988874321     11237889999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=6.2e-26  Score=205.90  Aligned_cols=159  Identities=21%  Similarity=0.267  Sum_probs=145.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      |.+|+||||.|++.|+.++|+.|++.. +.+++..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            677899999999999999999999975 6788889999999999999999999999999999996 88999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccch
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNK  220 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~  220 (593)
                      +..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +..++.+|.+|.||||+|.. ++        
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~--------  152 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GD--------  152 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TC--------
T ss_pred             HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CC--------
Confidence            99999999999999998 888999999999999999999999999988 67788999999999999776 66        


Q ss_pred             hHHHHHHHHHHHHH
Q 007677          221 EAETLVESLWEEVI  234 (593)
Q Consensus       221 ~~~~~~~~L~~~~~  234 (593)
                        .+++++|.+.|+
T Consensus       153 --~~i~~~L~~~gA  164 (165)
T 3twr_A          153 --TDIQDLLRGDAA  164 (165)
T ss_dssp             --HHHHHHHHTC--
T ss_pred             --hHHHHHHhhccc
Confidence              688888876653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1.4e-26  Score=223.90  Aligned_cols=179  Identities=16%  Similarity=0.121  Sum_probs=129.5

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +..|.||||.|+..|+.+.++.|+++ +.+++.  ++.|.||||.|+..|+.++|++|++.  +++++.+|..|.||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN   76 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence            56799999999999999999999986 777774  57899999999999999999999998  78999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchh-HHHHHH--HHcCCHHHH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCI-ELLVQL--IETGLYAVA  182 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~-t~L~~A--~~~~~~~~v  182 (593)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||+|.|  +..|+.+++
T Consensus        77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence            99999999999999999997 8899999999999999999999999999999 777776666 999999  788999999


Q ss_pred             HHHHHhcchhhhcc---------ccCCccHHHHHHhcCC
Q 007677          183 LQLLHDHRYLATKR---------AKNKETALHVLARKNL  212 (593)
Q Consensus       183 ~~Ll~~~~~~~~~~---------d~~g~t~Lh~a~~~~~  212 (593)
                      +.|++. +...+..         +..+.++++++...|.
T Consensus       156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence            999998 4444433         5668888888777765

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.1e-25  Score=200.30  Aligned_cols=152  Identities=20%  Similarity=0.201  Sum_probs=143.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL  144 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  144 (593)
                      +.||||.|+..|+.+++++|++.. +.+++.+|..|.||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            578999999999999999999983 67899999999999999 9999999999999999996 88999999999999999


Q ss_pred             CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677          145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE  223 (593)
Q Consensus       145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~  223 (593)
                      |+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++.  ...+.+|.+|.||||+|+..++          .
T Consensus        79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~----------~  146 (156)
T 1bd8_A           79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA----------Q  146 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC----------H
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc----------H
Confidence            99999999999998 788899999999999999999999999988  6778899999999999999999          8


Q ss_pred             HHHHHHHH
Q 007677          224 TLVESLWE  231 (593)
Q Consensus       224 ~~~~~L~~  231 (593)
                      ++++.|++
T Consensus       147 ~~v~~Ll~  154 (156)
T 1bd8_A          147 DLVDILQG  154 (156)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            88888875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=1.1e-25  Score=207.31  Aligned_cols=164  Identities=16%  Similarity=0.100  Sum_probs=146.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      ++++.++||.|+..|+.++|++|++.. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            2 SPEFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA   79 (179)
T ss_dssp             -----CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            356789999999999999999999986 6789999999999999999999999999999999997 88999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccch
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNK  220 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~  220 (593)
                      +..|+.+++++|+++++ .+..+..|.||||.|+..++.++++.|++. +..++.+|..|.||||+|+..++        
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~--------  150 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLR--------  150 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHH--------
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHH--------
Confidence            99999999999999998 888999999999999999999999999998 67788899999999999988766        


Q ss_pred             hHHHHHHHHHHHHHhcCh
Q 007677          221 EAETLVESLWEEVILLSK  238 (593)
Q Consensus       221 ~~~~~~~~L~~~~~~~~~  238 (593)
                        .++++.|++.|++++.
T Consensus       151 --~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          151 --ELLRERAEKMGQNLNR  166 (179)
T ss_dssp             --HHHHHHHHHTTCCCSC
T ss_pred             --HHHHHHHHHhhcCccc
Confidence              6777777777766653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=3.8e-25  Score=198.07  Aligned_cols=150  Identities=20%  Similarity=0.147  Sum_probs=139.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL  144 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  144 (593)
                      ..||||.|++.|+.++|++|++.  +.+++ .|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            46899999999999999999999  66665 5889999999999999999999999999996 78999999999999999


Q ss_pred             CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677          145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE  223 (593)
Q Consensus       145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~  223 (593)
                      |+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +..++.+|.+|.||||+|+..++          .
T Consensus        78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------~  146 (153)
T 1awc_B           78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGN----------E  146 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC----------H
T ss_pred             ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC----------H
Confidence            99999999999998 888899999999999999999999999998 67788899999999999999998          7


Q ss_pred             HHHHHH
Q 007677          224 TLVESL  229 (593)
Q Consensus       224 ~~~~~L  229 (593)
                      +++++|
T Consensus       147 ~i~~~L  152 (153)
T 1awc_B          147 DLAEIL  152 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777665

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=1.1e-24  Score=190.87  Aligned_cols=130  Identities=14%  Similarity=0.159  Sum_probs=116.9

Q ss_pred             CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcC-CC
Q 007677           23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI-GC  101 (593)
Q Consensus        23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~  101 (593)
                      .+..|..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+. |+.+++++|+++  +++++.+|.. |+
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~   79 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLT   79 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTB
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCC
Confidence            346788899999999999999999999986 7888877 8899999999999 999999999998  8889999999 89


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          102 TAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       102 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      ||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999886 7888999999999999999999999998874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=7.4e-24  Score=185.65  Aligned_cols=128  Identities=20%  Similarity=0.251  Sum_probs=117.9

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      .....+.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|.|||
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L   84 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPL   84 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHH
Confidence            4467789999999999999999999987 7888877 89999999999999999999999999  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET  157 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  157 (593)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|
T Consensus        85 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           85 HLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999996 889999999999999999999999999864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.3e-24  Score=195.25  Aligned_cols=141  Identities=15%  Similarity=0.155  Sum_probs=111.7

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh-H
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT-A  103 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T-p  103 (593)
                      ..+..|.||||.|+..|+.+++++|++. +.+++.+ +..|.||||+|+ .|+.++|++|+++  +++++.+|..|.| |
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRP   81 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHH
Confidence            4477788999999999999999999986 7788877 888999999985 8999999999988  8889999999998 9


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLV  171 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~  171 (593)
                      ||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.++.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            99999999999999999999886 7888999999999999999999999998887 6666777777665

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.3e-24  Score=201.06  Aligned_cols=154  Identities=13%  Similarity=0.051  Sum_probs=137.7

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCchhhhchhcCCChHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRI----DFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      .++++||.|++.|+.+.++.++...   ++.+.+..|+||||+|+..|+.    +++++|+++  |++++.+|..|+|||
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLF   79 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTH
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence            4678999999999999999999874   3334236799999999999985    599999999  899999999999999


Q ss_pred             HHHHHcCC------HHHHHHHHhcCCCCCccCCCCCC-CHHHHHHHcCC-----HHHHHHHHH-hcc-cccCCcchhHHH
Q 007677          105 FYAVASES------VELVKATMKGNEGIATLPDNDGM-LPIVRAASLGR-----TEVVEFLYR-ETK-NSLKDDDCIELL  170 (593)
Q Consensus       105 h~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g~-----~~iv~~Ll~-~~~-~~~~~~~g~t~L  170 (593)
                      |+|+..|+      .+++++|+++|+++ +.+|..|. ||||+|+..+.     .+++++|++ +++ .+..|..|.|||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL  158 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence            99999987      68999999999997 88999999 99999999553     569999999 888 889999999999


Q ss_pred             HHHHHcCCHHHHHHHHHh
Q 007677          171 VQLIETGLYAVALQLLHD  188 (593)
Q Consensus       171 ~~A~~~~~~~~v~~Ll~~  188 (593)
                      |+|...|+.++++.|++.
T Consensus       159 ~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            999999999999988876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=1.5e-23  Score=183.75  Aligned_cols=130  Identities=18%  Similarity=0.119  Sum_probs=123.1

Q ss_pred             ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 007677           54 EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDND  133 (593)
Q Consensus        54 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~  133 (593)
                      +.+++.. +..|.||||+|+..|+.++|++|+++  +++++.+|..|.||||+|+. |+.+++++|+++|+++ +.+|..
T Consensus         2 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~   76 (136)
T 1d9s_A            2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA   76 (136)
T ss_dssp             CCCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred             CCCccCC-CCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence            4566766 88999999999999999999999999  89999999999999999999 9999999999999997 788888


Q ss_pred             -CCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          134 -GMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       134 -g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                       |.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..++.++++.|+++
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             9999999999999999999999998 888999999999999999999999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=5.1e-23  Score=177.18  Aligned_cols=125  Identities=29%  Similarity=0.430  Sum_probs=115.6

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      +|+||||.|+..|+.+++++|++. +.+++.+ +..|.||||+|+..|+.+++++|++.  +.+++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence            478999999999999999999987 7777776 88999999999999999999999998  8899999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      ..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus        77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            999999999999999986 7889999999999999999999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.4e-23  Score=188.47  Aligned_cols=141  Identities=17%  Similarity=0.076  Sum_probs=118.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCC-HHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGML-PIVR  140 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~  140 (593)
                      +..|.||||+|+..|+.++|++|+++  +++++.+|..|.||||+|+ .|+.+++++|+++|+++ +.+|..|.| |||+
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD   84 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence            67899999999999999999999998  8999999999999999985 99999999999999997 889999999 9999


Q ss_pred             HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHH
Q 007677          141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVL  207 (593)
Q Consensus       141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a  207 (593)
                      |+..|+.+++++|+++++ .+..+..|.||||+|+..|+.++++.|+++ +...+.++..|.||.+-+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccC
Confidence            999999999999999998 888999999999999999999999999987 777888999999998743

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.88  E-value=4.8e-23  Score=190.43  Aligned_cols=159  Identities=8%  Similarity=0.052  Sum_probs=139.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHcCCH----HHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVASESV----ELVKATMKGNEGIATLPDNDGMLPIV  139 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~  139 (593)
                      +.++||.|++.|+.+.++.+++.  +  ++.++ ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            46799999999999999999876  3  45555 7899999999999985    5999999999997 889999999999


Q ss_pred             HHHHcCC------HHHHHHHHHhcc-cccCCcchh-HHHHHHHHcC-----CHHHHHHHHHhcchhhhccccCCccHHHH
Q 007677          140 RAASLGR------TEVVEFLYRETK-NSLKDDDCI-ELLVQLIETG-----LYAVALQLLHDHRYLATKRAKNKETALHV  206 (593)
Q Consensus       140 ~A~~~g~------~~iv~~Ll~~~~-~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~  206 (593)
                      +|+..|+      .+++++|+++|+ .+..|..|. ||||+|+..+     ..++++.|++..+.+++.+|..|.||||+
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~  160 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF  160 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence            9999987      588999999999 889999999 9999999844     35688889985588899999999999999


Q ss_pred             HHhcCCCcccccchhHHHHHHHHHHHHHhcCh
Q 007677          207 LARKNLGDKDRKNKEAETLVESLWEEVILLSK  238 (593)
Q Consensus       207 a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~  238 (593)
                      |+..++          .++++.|.+...+.+.
T Consensus       161 A~~~~~----------~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          161 VKRCQK----------PIALKMMEDYIKKYNL  182 (186)
T ss_dssp             HHTTTC----------HHHHHHHHHHHHHHTC
T ss_pred             HHHcCC----------HHHHHHHHHHHHHHhc
Confidence            999998          7888888877655443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.88  E-value=1.8e-22  Score=176.81  Aligned_cols=124  Identities=23%  Similarity=0.250  Sum_probs=117.9

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      ...+.||||+|+..|+.++|++|+++  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            56789999999999999999999999  8999999999999999999999999999999999997 78999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      +..|+.+++++|+++++ .+..|..|.||||.|+..|+.++++.|++.
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999998 788899999999999999999999999875

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=3.7e-23  Score=181.33  Aligned_cols=128  Identities=15%  Similarity=0.150  Sum_probs=114.9

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV  104 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL  104 (593)
                      .+|..|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|+|||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L   80 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPL   80 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHH
Confidence            4588899999999999999999999986 7888877 88999999999999999999999998  899999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET  157 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  157 (593)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+..+++++|.+..
T Consensus        81 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           81 HDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            9999999999999999999996 889999999999999998888888776654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=1.3e-22  Score=187.38  Aligned_cols=141  Identities=20%  Similarity=0.181  Sum_probs=128.5

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHH
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAV  104 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpL  104 (593)
                      .+..|.||||.|+..|+.+.++.|++  +.+++.+ |..|.||||+|+..|+.++|++|+++  +++++.+| ..|+|||
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL  114 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTAL  114 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHH
Confidence            46689999999999999999999998  7788887 89999999999999999999999999  89999998 8999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQ  184 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  184 (593)
                      |+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++.                ..+.+++++|+..|+.++++.
T Consensus       115 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          115 HMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHH
Confidence            9999999999999999999997 88999999999999975433                345789999999999999998


Q ss_pred             HHHh
Q 007677          185 LLHD  188 (593)
Q Consensus       185 Ll~~  188 (593)
                      |.++
T Consensus       178 L~~~  181 (183)
T 3deo_A          178 LEGQ  181 (183)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            8764

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=9.1e-22  Score=169.28  Aligned_cols=123  Identities=28%  Similarity=0.387  Sum_probs=117.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      +|+||||+|+..|+.+++++|+++  +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            589999999999999999999999  8899999999999999999999999999999999996 7889999999999999


Q ss_pred             cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677          144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDH  189 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  189 (593)
                      .|+.+++++|++++. .+..+..|.||||.|+..++.++++.|++++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999998 7888999999999999999999999999873

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.2e-22  Score=194.87  Aligned_cols=142  Identities=19%  Similarity=0.173  Sum_probs=130.2

Q ss_pred             ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChH
Q 007677           25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTA  103 (593)
Q Consensus        25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp  103 (593)
                      ..+..|.||||.|+..|+.++++.|++  +.+++.+ |..|.||||+|+..|+.++|++|+++  +++++.+| ..|.||
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~  114 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCH
Confidence            345689999999999999999999998  7788887 89999999999999999999999999  89999998 889999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHH
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVAL  183 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  183 (593)
                      ||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++                ...+.+|||+|+..|+.++++
T Consensus       115 L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~----------------~~~~~~~l~~a~~~g~~~iv~  177 (244)
T 3ui2_A          115 LHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVIN  177 (244)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT----------------TCCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh----------------ccCCCCHHHHHHHcChHHHHH
Confidence            99999999999999999999997 8899999999999986332                256789999999999999999


Q ss_pred             HHHHh
Q 007677          184 QLLHD  188 (593)
Q Consensus       184 ~Ll~~  188 (593)
                      .|++.
T Consensus       178 ~L~~~  182 (244)
T 3ui2_A          178 VLEGQ  182 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=6.4e-22  Score=197.50  Aligned_cols=122  Identities=19%  Similarity=0.254  Sum_probs=60.0

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVE-----ITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      ++||.|+..|+.+.++.|++. +.+++..     .+..|.||||+|+..   |+.++|++|++.  +++++.+|..|+||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTA  229 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCCH
T ss_pred             HHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCCH
Confidence            445555555555555544433 3344331     144445555555544   445555555554  44455555555555


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET  157 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~  157 (593)
                      ||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            55555555555555555555543 444555555555555555555555554444

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=3.2e-22  Score=171.84  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=100.1

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +..|.||||.|+..|+.+.++.|++. +.+++.+ |..|.||||+|+..|+.+++++|++.  +++++.+|..|+||||+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~   79 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLS   79 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence            55678999999999999999999986 6778876 88999999999999999999999988  88999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG  145 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  145 (593)
                      |+..|+.+++++|+++|+++ +.+|..|.||||+|...+
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~  117 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQA  117 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHH
Confidence            99999999999999999986 788999999999994433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=2.2e-22  Score=176.44  Aligned_cols=124  Identities=17%  Similarity=0.196  Sum_probs=113.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      |..|.||||+|+..|+.+++++|++.  +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A   83 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA   83 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence            88999999999999999999999998  8999999999999999999999999999999999996 88999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      +..|+.+++++|+++++ .+..|..|.||+|+|+..+..++++.+.+.
T Consensus        84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            99999999999999998 788899999999999887777666555443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=4.3e-22  Score=189.95  Aligned_cols=129  Identities=19%  Similarity=0.176  Sum_probs=104.4

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF  105 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh  105 (593)
                      .+..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|++.. +++++.+|..|+||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHH
Confidence            356678889999999999888888885 7778776 788889999999999999999888875 6788888888899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          106 YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       106 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      +|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++++.|++.++
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             HHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence            999999999999999888886 7888888999999988888888888888776

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=9.5e-22  Score=190.42  Aligned_cols=171  Identities=18%  Similarity=0.156  Sum_probs=141.5

Q ss_pred             cccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677           28 ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA  107 (593)
Q Consensus        28 ~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A  107 (593)
                      ..+.+++..++..|+.+.+..+... +.+    .+..|+||||+|++.|+.++|+.|++   +.+++.+|..|.||||+|
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~-~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A   84 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYI-AAD----VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFV   84 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGS-CHH----HHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHH
T ss_pred             CCCccHHHHHHHcCCCccccccccc-ccc----cccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHH
Confidence            3455666666666766555433222 222    24578999999999999999999998   478999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677          108 VASESVELVKATMKGNEGIATLPD-NDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL  185 (593)
Q Consensus       108 ~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  185 (593)
                      +..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++++ .+..|..|.||||.|+..+        
T Consensus        85 ~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~--------  155 (244)
T 3ui2_A           85 AGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL--------  155 (244)
T ss_dssp             HHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH--------
T ss_pred             HHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH--------
Confidence            9999999999999999997 5555 889999999999999999999999998 8889999999999998532        


Q ss_pred             HHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHh
Q 007677          186 LHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVIL  235 (593)
Q Consensus       186 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~  235 (593)
                                ....+.||||+|+..++          .++++.|.+.+.+
T Consensus       156 ----------~~~~~~~~l~~a~~~g~----------~~iv~~L~~~~~~  185 (244)
T 3ui2_A          156 ----------KTTPKGNPMQFGRRIGL----------EKVINVLEGQVFE  185 (244)
T ss_dssp             ----------TTCCCSSHHHHHHHHHH----------HHHHHHHHHHHEE
T ss_pred             ----------hccCCCCHHHHHHHcCh----------HHHHHHHHHhccc
Confidence                      23678999999999987          7788888776544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=9.7e-22  Score=181.52  Aligned_cols=138  Identities=21%  Similarity=0.218  Sum_probs=123.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD-NDGMLPIVR  140 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~  140 (593)
                      +..|+||||+|+..|+.++++.|++   +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence            5578999999999999999999998   5789999999999999999999999999999999997 5566 899999999


Q ss_pred             HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677          141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN  219 (593)
Q Consensus       141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~  219 (593)
                      |+..|+.+++++|+++++ .+..|..|.||||+|+..+                  ....+.++|++++..+.       
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~------------------~~~~~~~~l~~a~~~~~-------  171 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGL-------  171 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH------------------HTCCCCSHHHHHHHHHH-------
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc------------------cCcccccHHHHHHHcCH-------
Confidence            999999999999999998 8889999999999998643                  22467899999999887       


Q ss_pred             hhHHHHHHHHHH
Q 007677          220 KEAETLVESLWE  231 (593)
Q Consensus       220 ~~~~~~~~~L~~  231 (593)
                         .++++.|.+
T Consensus       172 ---~~i~~~L~~  180 (183)
T 3deo_A          172 ---EKVINVLEG  180 (183)
T ss_dssp             ---HHHHHHHHT
T ss_pred             ---HHHHHHHHH
Confidence               777777754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=1.5e-21  Score=167.70  Aligned_cols=110  Identities=18%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      +..|+||||+|+..|+.+++++|++.  +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            56789999999999999999999998  8899999999999999999999999999999999996 88999999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHH
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLI  174 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~  174 (593)
                      +..|+.+++++|+++++ .+..+..|.||+|+|.
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            99999999999999988 7778888899998884

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=187.83  Aligned_cols=138  Identities=14%  Similarity=0.066  Sum_probs=121.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhc------hhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCC
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAK------QNKIGCTAVFYAVAS---ESVELVKATMKGNEGIATLPDNDGM  135 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~------~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~  135 (593)
                      +.++||.|+..|+.+.|+.|++.  +.+++.      .|..|+||||+|+..   |+.+++++|+++|+++ +.+|..|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence            34679999999999999999988  788887      689999999999997   8999999999999997 88999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677          136 LPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       136 tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      ||||+|+..|+.+++++|+++++ .+..|..|.||||+|+..++.++++.|++...       ..|.||||+|+..|+
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-------~~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA-------GTFAFPLHVDYSWVI  298 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-------HTTSSCCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-------CCCCChhHHHHhcCC
Confidence            99999999999999999999999 88899999999999999999999999998732       268999999998876

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=3.6e-21  Score=183.47  Aligned_cols=124  Identities=15%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG-NEGIATLPDNDGMLPIVR  140 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~  140 (593)
                      +..|.||||+|+..|+.++|++|++.  +++++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence            56789999999999999999999998  899999999999999999999999999999999 8886 8899999999999


Q ss_pred             HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      |+..|+.+++++|+++++ .+..+..|.||||+|+..+..++++.++..
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence            999999999999999998 888999999999999999999999998887

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=3.6e-20  Score=189.10  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=112.9

Q ss_pred             ccccchHhHHHHHc-CCHHHHHHHHhhCccccccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           27 TITRRLKLYRAALN-GDWAVAKDIYDKYEGEIGVEIT--NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~--~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      +..+.|+||.|+.. |+.+.++.|++. +.+++.. +  ..|.||||+|+..|+.++|++|+++  +++++.+|..|+||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGP  271 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence            34566899999999 999999999875 7888876 5  7899999999999999999999998  88999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      ||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999999996 8889999999999999999999999988765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.82  E-value=4.2e-20  Score=150.03  Aligned_cols=92  Identities=30%  Similarity=0.473  Sum_probs=72.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS  143 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~  143 (593)
                      +|+||||+|+..|+.+++++|++.  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            367888888888888888888887  7778888888888888888888888888888888775 6777788888888888


Q ss_pred             cCCHHHHHHHHHhcc
Q 007677          144 LGRTEVVEFLYRETK  158 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~  158 (593)
                      .|+.+++++|+++++
T Consensus        78 ~~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGA   92 (93)
T ss_dssp             TTCHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHcCC
Confidence            888888888887764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=7.9e-20  Score=180.23  Aligned_cols=126  Identities=22%  Similarity=0.314  Sum_probs=112.1

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhchhcCC
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE-----ITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAKQNKIG  100 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~d~~g  100 (593)
                      ...++|+.|+..|+.+.++.+++. +.+++..     .+..|.||||+|+..   |+.++|++|+++  +++++.+|..|
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g  205 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKG  205 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTC
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCC
Confidence            345789999999999999998887 5554332     277899999999999   899999999999  89999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          101 CTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       101 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      +||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++
T Consensus       206 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          206 STALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999996 8899999999999999999999999999887

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.80  E-value=1.5e-19  Score=146.80  Aligned_cols=93  Identities=28%  Similarity=0.408  Sum_probs=87.2

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      +|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence            478999999999999999999986 8889887 89999999999999999999999999  8999999999999999999


Q ss_pred             HcCCHHHHHHHHhcCCC
Q 007677          109 ASESVELVKATMKGNEG  125 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~  125 (593)
                      ..|+.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999999874

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.79  E-value=5.4e-19  Score=174.25  Aligned_cols=192  Identities=17%  Similarity=0.117  Sum_probs=133.7

Q ss_pred             hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHH
Q 007677           96 QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQL  173 (593)
Q Consensus        96 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A  173 (593)
                      .|..+.++++.+...|+..+.+++...-+.....+-..+....    .....-..+++.....  .........++|+.|
T Consensus        62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a  137 (278)
T 1dcq_A           62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA  137 (278)
T ss_dssp             TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence            4555667777777777766655554332221000101111111    1111111222222222  122233445678888


Q ss_pred             HHcCCHHHHHHHHHhcchh-----hhccccCCccHHHHHHhc---CCCcccccchhHHHHHHHHHHHHHhcChHHHHHHh
Q 007677          174 IETGLYAVALQLLHDHRYL-----ATKRAKNKETALHVLARK---NLGDKDRKNKEAETLVESLWEEVILLSKQEIWELI  245 (593)
Q Consensus       174 ~~~~~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~  245 (593)
                      +..++.+.+..++..+.+.     .+..|..|+||||+|+..   ++          .+++++|++.|++++..+     
T Consensus       138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~----------~~~v~~Ll~~ga~in~~d-----  202 (278)
T 1dcq_A          138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS----------LHIVDFLVQNSGNLDKQT-----  202 (278)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT----------HHHHHHHHHHCSCTTCCC-----
T ss_pred             hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch----------HHHHHHHHHCCCCccccC-----
Confidence            8888888888777774332     344588899999999998   66          899999999999888655     


Q ss_pred             hcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          246 EQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       246 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+..|+.+++++|++.|++
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGKASI-EIANES-GETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCC-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            78999999999999999999999999998 899999 99999999999999999999998764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.77  E-value=6.7e-19  Score=179.73  Aligned_cols=145  Identities=18%  Similarity=0.175  Sum_probs=117.6

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHcCCchhhhchh--cCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677           63 NHGKTALHVAAEA-NRIDFVKKLLKRMSAEDLAKQN--KIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV  139 (593)
Q Consensus        63 ~~g~T~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  139 (593)
                      ..+.|+||.|+.. |+.++|+.|+++  +++++..|  ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh  273 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH  273 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            3456899999999 999999999998  89999888  89999999999999999999999999997 789999999999


Q ss_pred             HHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcch--hhhccccCCccHHHHHHhc
Q 007677          140 RAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRY--LATKRAKNKETALHVLARK  210 (593)
Q Consensus       140 ~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~a~~~  210 (593)
                      +|+..|+.+++++|+++++ .+..|..|.||||+|+..++.++++.|++....  .....+..+.|+++.+...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            9999999999999999999 888999999999999999999999999987322  2223455677877765544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=3e-19  Score=151.15  Aligned_cols=106  Identities=24%  Similarity=0.271  Sum_probs=55.2

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      |.+|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++  +++++.+|..|.||||+
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL   81 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence            44555555555555555555555543 4444443 45555555555555555555555555  45555555555555555


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLP  137 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  137 (593)
                      |+..|+.+++++|+++|+++ +.++..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence            55555555555555555554 4444445444

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=4.3e-19  Score=150.18  Aligned_cols=105  Identities=26%  Similarity=0.322  Sum_probs=95.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      |.+|+||||+|+..|+.+++++|+++  +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA   82 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence            88999999999999999999999999  8899999999999999999999999999999999997 78899999999999


Q ss_pred             HHcCCHHHHHHHHHhcc-cccCCcchhHH
Q 007677          142 ASLGRTEVVEFLYRETK-NSLKDDDCIEL  169 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~  169 (593)
                      +..|+.+++++|+++++ .+..+..|.+|
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            99999999999999987 55555555444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.71  E-value=2.1e-17  Score=138.54  Aligned_cols=89  Identities=24%  Similarity=0.268  Sum_probs=67.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      +.+|.||||+|+..|+.+++++|++.  +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS   97 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence            66777777777777777777777777  6777777777777777777777777777777777775 66777777777777


Q ss_pred             HHcCCHHHHHHH
Q 007677          142 ASLGRTEVVEFL  153 (593)
Q Consensus       142 ~~~g~~~iv~~L  153 (593)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            777777777765

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=1.2e-16  Score=133.95  Aligned_cols=92  Identities=24%  Similarity=0.307  Sum_probs=84.4

Q ss_pred             CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      ...|.+|.|+||.|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|+++  +++++.+|..|.||
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTA   93 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcH
Confidence            46688999999999999999999999986 8888887 89999999999999999999999999  89999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 007677          104 VFYAVASESVELVKAT  119 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~L  119 (593)
                      ||+|+..|+.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X

Probab=82.09  E-value=20  Score=35.17  Aligned_cols=26  Identities=12%  Similarity=0.141  Sum_probs=13.1

Q ss_pred             CCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677          162 KDDDCIELLVQLIETGLYAVALQLLH  187 (593)
Q Consensus       162 ~~~~g~t~L~~A~~~~~~~~v~~Ll~  187 (593)
                      .|..|.-.+..++..+..+....+++
T Consensus       213 ~d~~Gn~ViQ~~l~~~~~~~~~~i~~  238 (351)
T 3gvo_A          213 QDQYGNYVIQHVLEHGRPEDKSKIVS  238 (351)
T ss_dssp             TSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhCchhhHHHHHH
Confidence            45555555555555555444444443

>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A

Probab=81.17  E-value=9.4  Score=37.97  Aligned_cols=186  Identities=10%  Similarity=0.075  Sum_probs=107.5

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCc-cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhh-chhcCCChHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYE-GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLA-KQNKIGCTAV  104 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpL  104 (593)
                      |.+|.-.+..+...++.+..+.++++-. ..+....|..|+..+......+..+..+.+++...|.-.. ..+..|.-.+
T Consensus        39 d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVl  118 (369)
T 3k49_A           39 DQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVI  118 (369)
T ss_dssp             SHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHH
T ss_pred             CCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHH
Confidence            5555566677777788777776666522 1222234889999999999999888777777653222111 2455666666


Q ss_pred             HHHHHcCCHHHHHHHHhc-CCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHHHcCC
Q 007677          105 FYAVASESVELVKATMKG-NEG-IATLPDNDGMLPIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLIETGL  178 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~  178 (593)
                      ..+......+-...+++. .+. ..-..|.+|...+......+..+..+.+++.-.    .-..++.|...+..+...+.
T Consensus       119 Qk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~  198 (369)
T 3k49_A          119 QKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS  198 (369)
T ss_dssp             HHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCC
Confidence            666666665544444432 111 112355566555555555544333333332221    22357788888888888877


Q ss_pred             HHHHHHHHHhcc--hhhhccccCCccHHHHHHhcCC
Q 007677          179 YAVALQLLHDHR--YLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       179 ~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      .+.-+.+++.-.  ...-..|..|.-.+..+...+.
T Consensus       199 ~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~  234 (369)
T 3k49_A          199 SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQ  234 (369)
T ss_dssp             HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCC
Confidence            766666665421  1122467777777777666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	593
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 7e-14
 Identities = 63/359 (17%), Positives = 114/359 (31%), Gaps = 46/359 (12%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLKRMSA 90
           L+ A+  G   + K++  +     G          +T LH+AA A   +  K LL+  + 
Sbjct: 4   LHVASFMGHLPIVKNLLQR-----GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA- 57

Query: 91  EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVV 150
             +  + K   T +  A       +VK  ++ N               + A       V+
Sbjct: 58  -KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 116

Query: 151 EFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARK 210
             L +E   +         L    + G   VA +LL +         KN  T LHV    
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVA-ELLLERDAHPNAAGKNGLTPLHVAVHH 175

Query: 211 NLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIRE 270
           N  D          +V+ L                      +H AA +  V+    L++ 
Sbjct: 176 NNLD----------IVKLLLPR-----GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 220

Query: 271 YPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA--- 327
                  A+     T  H+A +    ++   +   +       +  ++ G   LHL    
Sbjct: 221 GG--SANAESVQGVTPLHLAAQEGHAEMVALLLSKQA----NGNLGNKSGLTPLHLVAQE 274

Query: 328 -----GELAPQHRLNV-----VSGSALQMQRELLWFKAVKD-VVPPKLRDAKNNKGLTP 375
                 ++  +H + V     +  + L +       K VK  +      +AK   G +P
Sbjct: 275 GHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 333

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 39/245 (15%), Positives = 79/245 (32%), Gaps = 43/245 (17%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
           L+ A  + +  + K +  +  G        +G T LH+AA+ N+++  + LL+   + + 
Sbjct: 169 LHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN- 225

Query: 94  AKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
             ++  G T +  A      E+V   +        L +  G+ P+   A  G   V + L
Sbjct: 226 -AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVL 283

Query: 154 ------------YRETKNSLKDDDCIELLVQLI--------------ETGLYAVA----- 182
                          T   +        LV+ +               + L+  A     
Sbjct: 284 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 343

Query: 183 --LQLLHDHRYLATKRAKNKETALHVLARKNLGD-----KDRKNKEAETLVESLWEEVIL 235
             + LL  +     + + +  T L +  R          K   ++ +  LV         
Sbjct: 344 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 403

Query: 236 LSKQE 240
            +  E
Sbjct: 404 ETVDE 408

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-05
 Identities = 45/274 (16%), Positives = 86/274 (31%), Gaps = 40/274 (14%)

Query: 135 MLPIVRAASLGRTEVVEFLYRETKN-SLKDDDCIELLVQLIETGLYAVALQLLHDHRYLA 193
           + P+  A+ +G   +V+ L +   + ++ +      L      G   VA + L  ++   
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA-KYLLQNKAKV 59

Query: 194 TKRAKNKETALHVLARKN------------------LGDKDRKNKEAETLVESLWEEVIL 235
             +AK+ +T LH  AR                              A           +L
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 236 LSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRL 295
             +     + ++    +H AA  G V+   +L+         A  K+  T  H+AV +  
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP--NAAGKNGLTPLHVAVHHNN 177

Query: 296 EDLFKFIYDIKPIADLMVDCTDEKGNNILH-------------LAGELAPQHRLNVVSGS 342
            D+ K +                 G   LH             L       +  +V   +
Sbjct: 178 LDIVKLLLPRG--GS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVT 233

Query: 343 ALQMQRELLWFKAVKDVVPPKLR-DAKNNKGLTP 375
            L +  +    + V  ++  +   +  N  GLTP
Sbjct: 234 PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 267

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 64.1 bits (155), Expect = 1e-11
 Identities = 33/324 (10%), Positives = 81/324 (25%), Gaps = 20/324 (6%)

Query: 4   STSLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAK---------DIYDKYE 54
              L + L +     ++  L   +    + ++         V +         +   K  
Sbjct: 20  PWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQL 79

Query: 55  GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA-EDLAKQNKIGCTAVFYAVASESV 113
                +     +    VAA       +  L   +++ E +         A   A  +  +
Sbjct: 80  WSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHL 139

Query: 114 ELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR----ETKNSLKDDDCIE 168
            ++          I  +   +       AA  G   V+  L      E    ++ ++   
Sbjct: 140 HVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 199

Query: 169 LLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAET-LVE 227
                +  G + V    L D   +      ++           +     + KE       
Sbjct: 200 FRWAAVGRGHHNVI-NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKL 258

Query: 228 SLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD---KKDNY 284
           S  + V  L  +            +    D   +  +  L+                D  
Sbjct: 259 SNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN 318

Query: 285 TIFHIAVKNRLEDLFKFIYDIKPI 308
            +  +A++   +     +  I  +
Sbjct: 319 ELLRLALRLGNQGACALLLSIPSV 342

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (151), Expect = 2e-11
 Identities = 38/243 (15%), Positives = 66/243 (27%), Gaps = 4/243 (1%)

Query: 61  ITNHGKTALHVAAEANRIDFVKKLLKRM-SAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
           +T  G TALH+A       F+  LL      E L  QN +G TA+  A        V+  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY 179
                G+            + A  +        L +   +  +D     L      T   
Sbjct: 65  YAAGAGVLVAERGGHTALHL-ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT 123

Query: 180 AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQ 239
           + A   +        +     E     L  +N       +         +   +      
Sbjct: 124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD 183

Query: 240 EIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLF 299
                    R  +H A +      L +L++   D   +       T    A+      L 
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM--YGGRTPLGSALLRPNPILA 241

Query: 300 KFI 302
           + +
Sbjct: 242 RLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 38/237 (16%), Positives = 63/237 (26%), Gaps = 8/237 (3%)

Query: 93  LAKQNKIGCTAVFYAVASESVELVKA--TMKGNEGIATLPDNDGMLPIVRAASLGRTEVV 150
                + G TA+  AV  +    +              L ++ G   +  AA LG    V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 151 EFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARK 210
           E LY      L  +      + L           +L   R   +      +T L      
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR--PSHPRDASDTYLTQSQDC 119

Query: 211 NLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIRE 270
                               EE      +   E            A       +  L+R+
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 271 YPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
               + K +     T  H+AV+ +   + + +  +K  AD         G   L  A
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELL--LKAGAD--PTARMYGGRTPLGSA 232

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.4 bits (129), Expect = 1e-08
 Identities = 37/282 (13%), Positives = 86/282 (30%), Gaps = 23/282 (8%)

Query: 32  LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE 91
           +KL+  A  G +A+ + I  +    + +    H +T LH  A  +  +  + L+   + E
Sbjct: 4   IKLHTEA-AGSYAITEPITRE---SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 92  DLAK------QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG 145
            +A        +    T +  AV +    LV   MK          ++       AA+  
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-R 118

Query: 146 RTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALH 205
              ++ ++      +          +         +        +  + K    K   + 
Sbjct: 119 DFGMMVYML-----NSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 173

Query: 206 VLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRE-----LIHDAADRGN 260
                    +  K + A      +    I+          +  ++      I  AA  G 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR 233

Query: 261 VQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI 302
           ++ +  LI++   +        ++T   +A  N   ++    
Sbjct: 234 IEVVMYLIQQGASVEAVD--ATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 39/271 (14%), Positives = 85/271 (31%), Gaps = 19/271 (7%)

Query: 66  KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEG 125
           ++ + +  EA     + + + R S        +   T + +  ++ S E  +  +     
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 126 IA-------TLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDD-DCIELLVQLIETG 177
                       D D   P++ A    R  +V +L +   +    +      L Q     
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118

Query: 178 LYAVALQLL-HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILL 236
            + + + +L         +          ++   N G     +     L+     +V   
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASA---KLLVEKGAKVDYD 175

Query: 237 SKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLE 296
                     + R  +H AA   N+  +  L+ E      K D +D  T   +A +    
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD-EDGKTPIMLAAQEGRI 234

Query: 297 DLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
           ++  ++  I+  A   V+  D   +    LA
Sbjct: 235 EVVMYL--IQQGAS--VEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 2/93 (2%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
             G+TALH AA+ + +  VK L+    +    KQ++ G T +  A     +E+V   ++ 
Sbjct: 185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
              +    D         A +     +V+   R
Sbjct: 244 GASV-EAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 8/56 (14%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEI---TNHGKTALHVAAEANRIDFVKKLLK 86
           +  AA  G   V   +  +     G  +        TA  +A   N  + V    +
Sbjct: 225 IMLAAQEGRIEVVMYLIQQ-----GASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 7e-08
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 36/128 (28%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAE------------------------------ 91
              G TAL  AAE   ++ +K LL  M A+                              
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 92  ------DLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG 145
                 D+  + + G T +  AV  + + LV+  ++         D+DG   ++ A  L 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 146 RTEVVEFL 153
             ++ E L
Sbjct: 265 LKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 42/273 (15%), Positives = 88/273 (32%), Gaps = 27/273 (9%)

Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
               L  A +   +D V++LL+   A    ++ + G T +  AV     ++V+  ++   
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQ 184
                  N     ++ A +     +  FL +    +  D       ++    G       
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 185 LLH---------DHRYLATKRAKNKETALHVLARKNLGDKDRKNKE-AETLVESLWEEVI 234
           L             +    +  K   TAL   A K        + E  + L++ +  +V 
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG-------HVEVLKILLDEMGADVN 176

Query: 235 LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNR 294
                    LI           +        +L+    D+  +   +   T   +AV+ +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVE----AITHLLLDHGADVNVRG--ERGKTPLILAVEKK 230

Query: 295 LEDLFKFIYDIKPIADLMVDCTDEKGNNILHLA 327
              L + + + +   +  ++ TD  G   L LA
Sbjct: 231 HLGLVQRLLE-QEHIE--INDTDSDGKTALLLA 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 49/275 (17%), Positives = 96/275 (34%), Gaps = 26/275 (9%)

Query: 102 TAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSL 161
             +  AV +E V+LV+  ++G   +    +  G  P+  A  + R ++VE L R   + +
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 162 KDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE 221
                      L         L+L         +      TA    A        +   +
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK 281
                      +   +K++   L +     + DAA++G+V+ L IL+ E    +   D  
Sbjct: 127 RGA-----NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM 181

Query: 282 DNYTIFHIAVKNRLEDLFKFIYD-IKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS 340
               + H  + +   D+    +  +   AD  V+   E+G   L LA E   +  L +V 
Sbjct: 182 GRNALIHALLSSDDSDVEAITHLLLDHGAD--VNVRGERGKTPLILAVE---KKHLGLV- 235

Query: 341 GSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTP 375
                   + L  +   ++      +  ++ G T 
Sbjct: 236 --------QRLLEQEHIEI------NDTDSDGKTA 256

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 51/295 (17%), Positives = 99/295 (33%), Gaps = 31/295 (10%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
           L +A  N D  + + + +     +  +    G T LH A + +R D V+ LL+  +    
Sbjct: 9   LIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV- 66

Query: 94  AKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
               K      F   A      +              D  G    + AA  G+ + ++FL
Sbjct: 67  --LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 154 YRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLG 213
           Y+   N        E   +L + G  A     L      A +  K     L +L  +   
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATA-----LM----DAAE--KGHVEVLKILLDEMGA 173

Query: 214 DKDRKNKEAETLVESLWEEVILLSKQEIWE-LIEQPREL----------IHDAADRGNVQ 262
           D +  +      +            + I   L++   ++          +  A ++ ++ 
Sbjct: 174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233

Query: 263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTD 317
            +  L+ +    +   D  D  T   +AV+ +L+ + + +   K  A    DC D
Sbjct: 234 LVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELL--CKRGAS--TDCGD 283

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 26/230 (11%)

Query: 1   MSESTSLSKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE 60
             E   +   L  D    + E   +            + +       D +   +  + + 
Sbjct: 48  FPEIQEMPTSLNNDSSNRNSEGGSSNQQ-----QQHVSFDSLLQEVNDAFPNTQLNLNIP 102

Query: 61  ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA---VASESVELVK 117
           +  HG T LH       ++ VK L+K  S  +    + +G + +  A   V +      +
Sbjct: 103 VDEHGNTPLHWLTSIANLELVKHLVKHGS--NRLYGDNMGESCLVKAVKSVNNYDSGTFE 160

Query: 118 ATMKGNEGIATLPDNDGMLPIVRAASLGRTE------------VVEFLYRETKNSLKDDD 165
           A +        L D+     +                      ++ ++ ++    ++   
Sbjct: 161 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 220

Query: 166 CIELLVQLIETGLYAVALQLLHDHRYLAT----KRAKNKETALHVLARKN 211
             +      + G    ++    D +++       +  N +T L++ AR  
Sbjct: 221 NEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 270

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 17  KESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEIT-NHGKTALHVAAEA 75
           K+ +  + + T  +  K          ++ +++  K+     +    ++G T L++AA  
Sbjct: 210 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269

Query: 76  NRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108
             I  V  LL   +  D    NK G   V +  
Sbjct: 270 GNISIVDALLDYGA--DPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 41/314 (13%), Positives = 82/314 (26%), Gaps = 62/314 (19%)

Query: 66  KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEG 125
           +  L         +    L    S  + ++           +  S   E+  A       
Sbjct: 40  EAFLQRLLFPEIQEMPTSLNNDSSNRN-SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 98

Query: 126 IATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQL 185
           +    D  G  P+    S+   E+V+ L +   N L  D+  E  +      +       
Sbjct: 99  LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 158

Query: 186 LHDHRYL----ATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEI 241
                               T LH +   +                              
Sbjct: 159 FEALLDYLYPCLILEDSMNRTILHHIIITSG----------------------------- 189

Query: 242 WELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF 301
                        AA       +  ++++    +      +  +  +     R + + + 
Sbjct: 190 -------MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN-EKESKPNDKNGERKDSILEN 241

Query: 302 IYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVP 361
           + D+K I   M++  D  G+  L++A   A    +++V          LL + A  D   
Sbjct: 242 L-DLKWIIANMLNAQDSNGDTCLNIA---ARLGNISIV--------DALLDYGA--DP-- 285

Query: 362 PKLRDAKNNKGLTP 375
                  N  GL P
Sbjct: 286 ----FIANKSGLRP 295

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 38/243 (15%), Positives = 69/243 (28%), Gaps = 25/243 (10%)

Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAE--DLAKQNKIGCTAVFYAVASESVELVKATMKG 122
           G T LH+A     +  V +L+        +L   N +  T +  AV +     V   +  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS-VVRLLVT 61

Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEF-----LYRETKNSLKDDDCIELLVQLIETG 177
                   D  G      A        +                ++ D +  L   + T 
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS 237
                  LL     +     K+  + L      N                    +++L  
Sbjct: 122 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS---------------MVQLLLQH 166

Query: 238 KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLED 297
              +   +      +H A+ RG +  +  L+R   D   K     N T   +A   R+ D
Sbjct: 167 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN--CHNDTPLMVARSRRVID 224

Query: 298 LFK 300
           + +
Sbjct: 225 ILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 34  LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
           L  A  N   ++ + +     G         G +ALH A+    +  V+ L++  +  D 
Sbjct: 148 LIHAVENNSLSMVQLLLQH--GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DS 203

Query: 94  AKQNKIGCTAVFYAVASESVELVK 117
           + +N    T +  A +   +++++
Sbjct: 204 SLKNCHNDTPLMVARSRRVIDILR 227

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 30/269 (11%)

Query: 61  ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120
           +          A  +   + V +LL+R +  D+   N  G TA+  A            +
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGA--DINYANVDGLTALHQAC-----------I 82

Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYA 180
             N  +      +G                +       ++      +++   LI  G + 
Sbjct: 83  DDNVDMVKFLVENGA----------NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 181 VALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE 240
            A+    D      +    +E   + + R+ + D +   KE E ++     + +      
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 241 IWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFK 300
                +     +H AA +G  + L +LI+   D+       D +T  H A     E+  +
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI--KDYDGWTPLHAAAHWGKEEACR 249

Query: 301 FIYDIKPIADLMVDCTDEKGNNILHLAGE 329
            +  ++ + D  ++  ++ G     +A E
Sbjct: 250 IL--VENLCD--MEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 63  NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
             G T LH AA   + +  + L++ +   D+   NK+G TA   A   + +  ++   K
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLC--DMEAVNKVGQTAFDVA-DEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 59  VEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKA 118
           V     G TALHVAA     + +K L++     D+  ++  G T +  A      E  + 
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARY--DVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 119 TMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
            ++    +    +  G      A      +++ +L
Sbjct: 251 LVENLCDM-EAVNKVGQTAFDVADE----DILGYL 280

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 1e-05
 Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 8/150 (5%)

Query: 25  AETITRRLKLYRAALNGDWAVAKDIY----DKYEGEIGVEITNHGKTALHVAAEANRIDF 80
           A+T  +   L  A    D       Y    D  E           +TALH+A  +     
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 81  VK--KLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPI 138
           +     L + S     +  K      +  +   +  L             + +  G  P+
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA--SIEIANESGETPL 118

Query: 139 VRAASLGRTEVVEFLYRETKNSLKDDDCIE 168
             A  L      E L +           +E
Sbjct: 119 DIAKRLKHEHCEELLTQALSGRFNSHVHVE 148

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 3e-05
 Identities = 39/216 (18%), Positives = 69/216 (31%), Gaps = 38/216 (17%)

Query: 32  LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEAN--------------- 76
           L +   A +G     K+     +           +TALH A  A                
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLAT-RTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 77  -----------------RIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
                              D + K L    A  +   N+ GCT + YA +    E+    
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN-SLKDDDCIELLVQLIETGL 178
           ++G        D+     + RAA+ G  +++  L     + +++D +    L    +   
Sbjct: 123 LEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 179 YAVALQLLHDHRYLATKRAKNKETALHVLARKNLGD 214
              A +LL           K ++T L  +A+  LG 
Sbjct: 182 VEEA-KLLVSQGASIYIENKEEKTPLQ-VAKGGLGL 215

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 40/213 (18%), Positives = 70/213 (32%), Gaps = 20/213 (9%)

Query: 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKD 163
           V     S  +E +K ++  ++ +AT  D D    +  A S G TE+VEFL +        
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 164 DDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL----------- 212
           DD     + +  +      ++ L           +N  T LH  A KN            
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 213 GDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRE-------LIHDAADRGNVQFLS 265
            + D K+    T +     +  L     +                 +H A D   V+   
Sbjct: 127 ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK 186

Query: 266 ILIREYPDLMWKADKKDNYTIFHIAVKNRLEDL 298
           +L+ +   +  +   K+  T   +A       L
Sbjct: 187 LLVSQGASIYIEN--KEEKTPLQVAKGGLGLIL 217

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 5e-05
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 67  TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS 110
             LH A   N    V++LL    +  L ++++ G   + ++V+ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSF 44

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 62  TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVEL 115
              G T L  A      D    L+++  A +    +  G  A   A+  +  + 
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVALNEQVKKF 221

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 65  GKTALHVAAEANRIDFVKKLLKRMSAE--DLAKQNKIGCTAVFYA 107
           G + LH+A          ++++++  +   L  QN +  T +  A
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	593
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-43  Score=364.66  Aligned_cols=316  Identities=20%  Similarity=0.215  Sum_probs=250.7

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ||||.||..|+.++|+.|+++ |.+++.+ |..|+||||+|+..|+.++|++|+++  |++++.+|..|+||||+|+..|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~--gadi~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--cCCCCCCCCCCCCHHHHHHHcC
Confidence            788888888888888888876 7788876 88888888888888888888888888  7888888888888888888888


Q ss_pred             CHHHHHHHHhcCCCC--------------------------------CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-
Q 007677          112 SVELVKATMKGNEGI--------------------------------ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-  158 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~--------------------------------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-  158 (593)
                      +.++++.|+..+++.                                ....+..+.++++.|+..++.+++++|++++. 
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            888888888665432                                12345677788888888888888888888887 


Q ss_pred             cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCc---------------cccc-----
Q 007677          159 NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGD---------------KDRK-----  218 (593)
Q Consensus       159 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~---------------~~~~-----  218 (593)
                      .+..+.+|.+|||.|+..++.++++.|+++ +..++..+.+|.||+|++.......               ....     
T Consensus       158 ~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~  236 (408)
T d1n11a_         158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH  236 (408)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCcCCCcCchHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHH
Confidence            777778888888888888888888888876 4445566667777777766655400               0000     


Q ss_pred             ---chhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCc
Q 007677          219 ---NKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRL  295 (593)
Q Consensus       219 ---~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~  295 (593)
                         .....++++.+.+.+...+.     .+..|.||++.|++.++.+++++|+++|+++ +..+.. +.||||.|+..++
T Consensus       237 ~a~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~-~~t~L~~~~~~~~  309 (408)
T d1n11a_         237 LAAQEGHAEMVALLLSKQANGNL-----GNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRM-GYTPLHVASHYGN  309 (408)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTC-----CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSS-CCCHHHHHHHSSC
T ss_pred             HHHHhCcHhHhhhhhcccccccc-----ccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-cccccc-ccccchhhcccCc
Confidence               00114445555444433333     2467899999999999999999999999998 788888 9999999999999


Q ss_pred             hhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcc
Q 007677          296 EDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTP  375 (593)
Q Consensus       296 ~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tp  375 (593)
                      .++++++++.|++    +|.+|.+|+||||+|++.|+.++++.|                   +-.|++++.+|++|+||
T Consensus       310 ~~~~~~ll~~g~~----in~~d~~G~T~Lh~A~~~g~~~iv~~L-------------------l~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         310 IKLVKFLLQHQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLL-------------------LKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             SHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHTTCCSCCCCSSSCCH
T ss_pred             ceeeeeecccccc----ccccCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCCCCCCCCCCH
Confidence            9999999999988    889999999999999999997765544                   23789999999999999


Q ss_pred             hhhhhHH
Q 007677          376 KALFSKE  382 (593)
Q Consensus       376 l~~a~~~  382 (593)
                      +|+|.+.
T Consensus       367 L~~A~~~  373 (408)
T d1n11a_         367 LAIAKRL  373 (408)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999865

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-40  Score=339.52  Aligned_cols=304  Identities=18%  Similarity=0.225  Sum_probs=244.5

Q ss_pred             HHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 007677            9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRM   88 (593)
Q Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~   88 (593)
                      +.++.+...+.+.+  ..|..|+||||.|+..|+.++++.|+++ |++++.+ +.+|.||||+|+..|+.+++++|+...
T Consensus        14 ~~v~~Ll~~g~~in--~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~-~~~g~t~L~~A~~~g~~~~~~~Ll~~~   89 (408)
T d1n11a_          14 PIVKNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENN   89 (408)
T ss_dssp             HHHHHHHHTTCCSC--CSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHhh
Confidence            34455555554433  7799999999999999999999999997 7899987 899999999999999999999998763


Q ss_pred             C-------------------------------chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 007677           89 S-------------------------------AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLP  137 (593)
Q Consensus        89 ~-------------------------------~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  137 (593)
                      .                               +...+..+..+.++|+.|+..++.++++.|+++|.++ +..+.+|.+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~~~  168 (408)
T d1n11a_          90 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTP  168 (408)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCH
T ss_pred             hccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCcCchH
Confidence            1                               0123445677888888888888888888888888875 6778888888


Q ss_pred             HHHHHHcCCHHHHHHHHHhcc-cccCCcch---------------------------------hHHHHHHHHcCCHHHHH
Q 007677          138 IVRAASLGRTEVVEFLYRETK-NSLKDDDC---------------------------------IELLVQLIETGLYAVAL  183 (593)
Q Consensus       138 L~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g---------------------------------~t~L~~A~~~~~~~~v~  183 (593)
                      ||+|+..|+.+++++|+++++ .+..+..|                                 .||++.|+..+..++++
T Consensus       169 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  248 (408)
T d1n11a_         169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA  248 (408)
T ss_dssp             HHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhh
Confidence            888888888888888888766 44444444                                 45555555555555555


Q ss_pred             HHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHH
Q 007677          184 QLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQF  263 (593)
Q Consensus       184 ~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~  263 (593)
                      .++.. ....+..+..|.||++.++..++          .++++.|++.|++++...     ..+.||||.++..++.++
T Consensus       249 ~~~~~-~~~~~~~~~~g~~~l~~a~~~~~----------~~i~~~Ll~~g~~~~~~~-----~~~~t~L~~~~~~~~~~~  312 (408)
T d1n11a_         249 LLLSK-QANGNLGNKSGLTPLHLVAQEGH----------VPVADVLIKHGVMVDATT-----RMGYTPLHVASHYGNIKL  312 (408)
T ss_dssp             HHHTT-TCCTTCCCTTCCCHHHHHHHHTC----------HHHHHHHHHHTCCTTCCC-----SSCCCHHHHHHHSSCSHH
T ss_pred             hhhcc-ccccccccCCCCChhhhhhhcCc----------HHHHHHHHHCCCcccccc-----ccccccchhhcccCccee
Confidence            55444 33344456666666666666666          899999999998877654     677999999999999999


Q ss_pred             HHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      ++.+++.|.++ +.+|.. |+||||+|+++|+.+++++|+++|++    +|.+|++|+||||+|++.|+.+++++|
T Consensus       313 ~~~ll~~g~~i-n~~d~~-G~T~Lh~A~~~g~~~iv~~Ll~~GAd----~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         313 VKFLLQHQADV-NAKTKL-GYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             HHHHHHTTCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeeccccccc-cccCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999998 889999 99999999999999999999999998    889999999999999999998776544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-36  Score=290.92  Aligned_cols=229  Identities=19%  Similarity=0.123  Sum_probs=169.4

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchh---hhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 007677           61 ITNHGKTALHVAAEANRIDFVKKLLKRMSAED---LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLP  137 (593)
Q Consensus        61 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp  137 (593)
                      ++.+|+||||+||+.|+.++|++|+++  +++   ++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~--~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc--CCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchh
Confidence            477888888888888888888888887  444   7777888888888888888888888888888886 7788888888


Q ss_pred             HHHHHHcCCHHHHHHHHHhcccccCC-----------cchhH---HHHHHHHcCCHHHHHHHHHhcchhhhccccCCccH
Q 007677          138 IVRAASLGRTEVVEFLYRETKNSLKD-----------DDCIE---LLVQLIETGLYAVALQLLHDHRYLATKRAKNKETA  203 (593)
Q Consensus       138 L~~A~~~g~~~iv~~Ll~~~~~~~~~-----------~~g~t---~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~  203 (593)
                      ||+|+..++.+++++|++.......+           .....   .+..............+....+...+.+|.+|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            88888888888888888765411100           00011   11111111111222222333455667788999999


Q ss_pred             HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCC
Q 007677          204 LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDN  283 (593)
Q Consensus       204 Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g  283 (593)
                      ||+|+..++          .++++.|++.+.+.+...    +..|.||||+|++.|+.+++++|+++|+++ +.+|.. |
T Consensus       162 Lh~A~~~~~----------~~~v~~Ll~~~~~~~~~~----~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-n~~d~~-g  225 (255)
T d1oy3d_         162 LHVAVIHKD----------AEMVRLLRDAGADLNKPE----PTCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYG-G  225 (255)
T ss_dssp             HHHHHHTTC----------HHHHHHHHHHTCCTTCCC----TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-S
T ss_pred             ccccccccc----------cccccchhcccccccccc----cccccccccccccccHHHHHHHHHHCCCCC-CCCCCC-C
Confidence            999999988          889999999887766432    267899999999999999999999999998 788988 9


Q ss_pred             chHHHHHHHcCchhHHHHHhcccCc
Q 007677          284 YTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       284 ~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      +||||+|+.+++.+++++|+++|++
T Consensus       226 ~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         226 RTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-35  Score=276.29  Aligned_cols=220  Identities=20%  Similarity=0.238  Sum_probs=169.1

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA  109 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~  109 (593)
                      +++.|+.+|..|+.+.++.++..++.+++.+ |.+|+||||+||..|+.|++++|++.  +......+..+.++++.|+.
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~-D~~G~TpLh~Aa~~g~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~   79 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIAAS   79 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCc-CCCCCCHHHHHHHhhhhccccccccc--cccccccccccccccccccc
Confidence            3578899999999999999998888888876 89999999999999999999999988  67777778888999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677          110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDH  189 (593)
Q Consensus       110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  189 (593)
                      .|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++++.                               
T Consensus        80 ~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~-------------------------------  127 (223)
T d1uoha_          80 AGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA-------------------------------  127 (223)
T ss_dssp             HTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC-------------------------------
T ss_pred             ccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCC-------------------------------
Confidence            99999999999999886 7889999999999999999999999988765                               


Q ss_pred             chhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHH
Q 007677          190 RYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIR  269 (593)
Q Consensus       190 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~  269 (593)
                        +++.+|..|.||||+++..++          .+.++.|.+.+.+++..+     ..|.||||.|++.|+.+++++|++
T Consensus       128 --d~~~~~~~~~t~L~~a~~~~~----------~~~~~~L~~~~~~i~~~d-----~~g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         128 --NPDAKDHYEATAMHRAAAKGN----------LKMIHILLYYKASTNIQD-----TEGNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             --CTTCCCTTSCCHHHHHHHTTC----------HHHHHHHHHTTCCSCCCC-----TTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --CCCCcCCCCCccchhhhhcCC----------cchhhhhccccceeeecc-----CCCCceeccccccCcHHHHHHHHH
Confidence              123344455555555555444          444444444444444332     456677777777777777777777


Q ss_pred             HCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          270 EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       270 ~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      +|+++ +.+|.+ |+||||+| +.|+.+++++|++
T Consensus       191 ~Gad~-~~~d~~-g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         191 QGASI-YIENKE-EKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             TTCCS-CCCCTT-SCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CCCCC-CCCCCC-CCCHHHHH-HCCCHHHHhcccC
Confidence            77777 677777 77777776 4577777777765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-34  Score=280.87  Aligned_cols=269  Identities=19%  Similarity=0.245  Sum_probs=238.6

Q ss_pred             ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677           29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV  108 (593)
Q Consensus        29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~  108 (593)
                      +++|+||.|+++|+.++|+.|+++ |.+++.+.+..|.||||+|+..|+.+++++|++.  +......+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~-G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~--~~~~~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccc--cccccccccccchhhHHHh
Confidence            467999999999999999999987 8999888677899999999999999999999999  7888888999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cc----------cCCcchhHHHHHHHHcC
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NS----------LKDDDCIELLVQLIETG  177 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~----------~~~~~g~t~L~~A~~~~  177 (593)
                      ..+..+.....++...+. ...+..|.++++.|+..++...++.++.... .+          ..+..|.||||.|++.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             hcCCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcC
Confidence            999999999999988775 6678899999999999999999999987655 21          24566899999999999


Q ss_pred             CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHH
Q 007677          178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAAD  257 (593)
Q Consensus       178 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~  257 (593)
                      +.++++.|+++.+..++..+..|.++++.+.....      .....++++.|++.|++++..+     ..|.||||.|++
T Consensus       160 ~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~Li~~ga~~n~~~-----~~g~t~L~~a~~  228 (285)
T d1wdya_         160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSD------DSDVEAITHLLLDHGADVNVRG-----ERGKTPLILAVE  228 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC------TTTHHHHHHHHHHTTCCSSCCC-----TTSCCHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcccccCCCCccccccccccc------chHHHHHHHHHHHCCCCCCccC-----CCCCCccchhhh
Confidence            99999999998888889999999999887766543      2234678999999999887644     789999999999


Q ss_pred             cCcHHHHHHHHHH-CCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccC
Q 007677          258 RGNVQFLSILIRE-YPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDE  318 (593)
Q Consensus       258 ~g~~~~v~~Ll~~-~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~  318 (593)
                      .|+.+++++|+++ +.++ +.+|.+ |+||||+|+++|+.+++++|+++|++    +|++|.
T Consensus       229 ~~~~~~v~~lL~~~g~di-n~~d~~-G~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~  284 (285)
T d1wdya_         229 KKHLGLVQRLLEQEHIEI-NDTDSD-GKTALLLAVELKLKKIAELLCKRGAS----TDCGDL  284 (285)
T ss_dssp             TTCHHHHHHHHHSSSCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred             cCcHHHHHHHHHcCCCCC-cCCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence            9999999999986 6677 889999 99999999999999999999999999    777774

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.5e-34  Score=269.00  Aligned_cols=215  Identities=20%  Similarity=0.193  Sum_probs=188.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL  144 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  144 (593)
                      +++.|+.+|..|+.+.|+.+++.. +.+++.+|..|+||||+||..|+.+++++|++.+... ...+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            478899999999999998887765 7889999999999999999999999999999988875 66677888999999999


Q ss_pred             CCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHH
Q 007677          145 GRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAET  224 (593)
Q Consensus       145 g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~  224 (593)
                      ++.+++++|++++.                                 .++.+|.+|.||||+|+..++          .+
T Consensus        81 ~~~~i~~~Ll~~~~---------------------------------d~~~~d~~g~tpL~~A~~~~~----------~e  117 (223)
T d1uoha_          81 GRDEIVKALLGKGA---------------------------------QVNAVNQNGCTPLHYAASKNR----------HE  117 (223)
T ss_dssp             TCHHHHHHHHHTTC---------------------------------CTTCCCTTCCCHHHHHHHHTC----------HH
T ss_pred             cccchhHHHhccCc---------------------------------eeEeeCCCCCchhhHHHHcCC----------HH
Confidence            99999988887653                                 335678889999999999888          89


Q ss_pred             HHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          225 LVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       225 ~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      +++.|++.|++++..+     ..|.||||.|+..|+.++++.|++.+.++ +..|.. |+||||+|+..|+.+++++|++
T Consensus       118 ~~~~Ll~~g~d~~~~~-----~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~-g~TpL~~Aa~~g~~~~v~~LL~  190 (223)
T d1uoha_         118 IAVMLLEGGANPDAKD-----HYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTE-GNTPLHLACDEERVEEAKLLVS  190 (223)
T ss_dssp             HHHHHHHTTCCTTCCC-----TTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTT-CCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCcC-----CCCCccchhhhhcCCcchhhhhcccccee-eeccCC-CCceeccccccCcHHHHHHHHH
Confidence            9999999988877654     78899999999999999999999999998 899999 9999999999999999999999


Q ss_pred             ccCccccccccccCCCCchhHhhhhhCCCccc
Q 007677          305 IKPIADLMVDCTDEKGNNILHLAGELAPQHRL  336 (593)
Q Consensus       305 ~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~  336 (593)
                      +|++    ++.+|.+|+||||+|. .|+.+++
T Consensus       191 ~Gad----~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         191 QGAS----IYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             TTCC----SCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             CCCC----CCCCCCCCCCHHHHHH-CCCHHHH
Confidence            9998    7899999999999985 4654443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=4.2e-35  Score=287.58  Aligned_cols=260  Identities=15%  Similarity=0.101  Sum_probs=190.3

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC------CchhhhchhcCCChHH
Q 007677           31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRM------SAEDLAKQNKIGCTAV  104 (593)
Q Consensus        31 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~------~~~~~~~~d~~g~TpL  104 (593)
                      .||||.++..+..+.+..++.+.+.+.  ..++.|+||||+||..|+.++|+.|+.+.      .|+++|.+|.+|+|||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~--~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpL   78 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI--IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPL   78 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT--CCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc--CCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeee
Confidence            378987766544444444554434443  32457999999999999999998886542      2678999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHHHcCCHH
Q 007677          105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLIETGLYA  180 (593)
Q Consensus       105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~~~  180 (593)
                      |+|++.|+.++|++|+++|+++ +.+|.+|.|||++|+..++.++++++.....    .+..+..+.++.+.+...+..+
T Consensus        79 h~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (277)
T d2fo1e1          79 MLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD  157 (277)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT
T ss_pred             cccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccc
Confidence            9999999999999999999996 8889999999999999999999999887654    2223444444444444443322


Q ss_pred             HHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcC---hHHHHHHhhcchhHHHHHHH
Q 007677          181 VALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLS---KQEIWELIEQPRELIHDAAD  257 (593)
Q Consensus       181 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~---~~~~~~~~~~g~tpLh~Aa~  257 (593)
                      ..                                         ..+..+.+......   .......+..|.||||.++.
T Consensus       158 ~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~  196 (277)
T d2fo1e1         158 QV-----------------------------------------ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ  196 (277)
T ss_dssp             HH-----------------------------------------HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS
T ss_pred             cc-----------------------------------------ccccccccccccccccccccccccccCCCCccccccc
Confidence            11                                         11111111111000   00011123567899999999


Q ss_pred             cCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccc
Q 007677          258 RGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLN  337 (593)
Q Consensus       258 ~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~  337 (593)
                      .++.++++.++.......+.+|.. |+||||+|++.|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.++++
T Consensus       197 ~~~~~~~~~~l~~~~~~~~~~d~~-g~tpL~~A~~~g~~~iv~~Ll~~gad----in~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         197 VSNMPIVKYLVGEKGSNKDKQDED-GKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccccccccccccCCC-CCCHHHHHHHcCCHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            999999988777665555788888 99999999999999999999999988    7889999999999999999877766


Q ss_pred             cc
Q 007677          338 VV  339 (593)
Q Consensus       338 ~l  339 (593)
                      +|
T Consensus       272 lL  273 (277)
T d2fo1e1         272 IF  273 (277)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.6e-33  Score=278.70  Aligned_cols=234  Identities=21%  Similarity=0.234  Sum_probs=161.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL  144 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~  144 (593)
                      +.||||.||+.|+.++|++|+++  |+++|.+|.+|.||||+|+..|+.++|++|+++|.+. ...+..+.+||++|+..
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~--Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccc
Confidence            34666777766777777766666  6666666666777777777777777777777666664 55566666677777666


Q ss_pred             CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677          145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE  223 (593)
Q Consensus       145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~  223 (593)
                      ++.++++.|++++. .+..+..+.++++.|+..+..+.+..++...+.........+..+.+.                 
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~-----------------  179 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR-----------------  179 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-----------------
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccc-----------------
Confidence            66667666666665 555666666666666666666666666655332222211111111111                 


Q ss_pred             HHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHh
Q 007677          224 TLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIY  303 (593)
Q Consensus       224 ~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll  303 (593)
                      .....+.....+..     ..+..|.||||.|+..|+.++++.|+++|+++ +.+|.. |+||||+|++.|+.+++++|+
T Consensus       180 ~~~~~~~~~~~~~~-----~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~di-n~~~~~-g~TpL~~A~~~g~~~iv~lLl  252 (291)
T d1s70b_         180 DARQWLNSGHINDV-----RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYD-GWTPLHAAAHWGKEEACRILV  252 (291)
T ss_dssp             HHHHHHHHTCCCCC-----CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHH
T ss_pred             cchhhhcccccccc-----cccCCCCChhhHHHHcCChhhhcccccceecc-cccccC-CCCHHHHHHHcCCHHHHHHHH
Confidence            11111111111111     12367899999999999999999999999998 789999 999999999999999999999


Q ss_pred             cccCccccccccccCCCCchhHhhhh
Q 007677          304 DIKPIADLMVDCTDEKGNNILHLAGE  329 (593)
Q Consensus       304 ~~~~~~~~lin~~D~~G~T~LH~A~~  329 (593)
                      ++|++    ++.+|+.|+||||+|++
T Consensus       253 ~~Gad----v~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         253 ENLCD----MEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             HTTCC----TTCCCTTSCCTTTSCCS
T ss_pred             HCCCC----CCCcCCCCCCHHHHHHH
Confidence            99998    78999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-32  Score=258.83  Aligned_cols=222  Identities=16%  Similarity=0.133  Sum_probs=169.0

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhh---chhcCCChHHHHH
Q 007677           31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLA---KQNKIGCTAVFYA  107 (593)
Q Consensus        31 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~---~~d~~g~TpLh~A  107 (593)
                      ++|||.||..|+.+.++.|++..+.+++.+ |.+|+||||+|+..|+.++|++|+++  +++++   ..|..|.||+|+|
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSK--MENVNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHTT--CTTCCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCccccc-CCCCCCHHHHHHHcCCccccchhhhh--hcccccccccccccccccccc
Confidence            368888888888888888888777777766 88888888888888888888888887  55543   4566788888888


Q ss_pred             HHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677          108 VASESVELVKATMKGNEGI-ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL  185 (593)
Q Consensus       108 ~~~g~~~iv~~Ll~~~~~~-~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  185 (593)
                      +..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+. ....+..|.||||.|+..|+.++++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            8888888888888777543 24566778888888888888888888888776 555666667777777777777777666


Q ss_pred             HHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHH
Q 007677          186 LHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLS  265 (593)
Q Consensus       186 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~  265 (593)
                      ++..+..++.+|                                                .+|+||||+|++.|+.++++
T Consensus       158 l~~~~~~in~~d------------------------------------------------~~g~TpLh~A~~~~~~~~v~  189 (229)
T d1ixva_         158 CGLGKSAVNWQD------------------------------------------------KQGWTPLFHALAEGHGDAAV  189 (229)
T ss_dssp             HTTTCCCSCCCC------------------------------------------------TTSCCHHHHHHHTTCHHHHH
T ss_pred             cccccccccccc------------------------------------------------cccCCchhhhcccccHHHHH
Confidence            665444444443                                                44566666677777788888


Q ss_pred             HHHH-HCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677          266 ILIR-EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI  308 (593)
Q Consensus       266 ~Ll~-~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~  308 (593)
                      +|++ .|+++ +.+|.+ |+||||+|+.   .+++++|+++|+|
T Consensus       190 ~Ll~~~gad~-~~~d~~-g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         190 LLVEKYGAEY-DLVDNK-GAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHCCCS-CCCCTT-SCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             HHHHhcCCCC-CCcCCC-CCCHHHHHhh---HHHHHHHHHcCCC
Confidence            8886 47887 788888 9999999874   5788999998876

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-32  Score=260.67  Aligned_cols=213  Identities=22%  Similarity=0.238  Sum_probs=173.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCC--ccCCCCCCCHHHHHHH
Q 007677           66 KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA--TLPDNDGMLPIVRAAS  143 (593)
Q Consensus        66 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~  143 (593)
                      +||||+||+.|+.++|+.|++.. +.+++.+|.+|+||||+|+..|+.+++++|+++|+++.  ...+..|.+|+|+|+.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            58999999999999999999875 78899999999999999999999999999999998752  4578889999999999


Q ss_pred             cCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677          144 LGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE  223 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~  223 (593)
                      .+..++++.++..+.                               .......+..+.++++.++..++          .
T Consensus        80 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~----------~  118 (229)
T d1ixva_          80 VGNLEVVKSLYDRPL-------------------------------KPDLNKITNQGVTCLHLAVGKKW----------F  118 (229)
T ss_dssp             HTCHHHHHHHHSSSS-------------------------------CCCTTCCCTTSCCHHHHHHHTTC----------H
T ss_pred             ccccccccccccccc-------------------------------cccccccccccccccccccccch----------h
Confidence            999999998887765                               01112234444555555555544          4


Q ss_pred             HHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHh
Q 007677          224 TLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIY  303 (593)
Q Consensus       224 ~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll  303 (593)
                      ++++.|++.+...+..+     ..|.||||.|+..|+.++++.|++.++..++.+|.. |+||||+|+++|+.+++++|+
T Consensus       119 ~~~~~l~~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~-g~TpLh~A~~~~~~~~v~~Ll  192 (229)
T d1ixva_         119 EVSQFLIENGASVRIKD-----KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ-GWTPLFHALAEGHGDAAVLLV  192 (229)
T ss_dssp             HHHHHHHHTTCCSCCCC-----TTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhhhhcccccccC-----CCCCCccchhhhcccccccccccccccccccccccc-cCCchhhhcccccHHHHHHHH
Confidence            55555555544443332     567888999999999999999999987666899999 999999999999999999999


Q ss_pred             c-ccCccccccccccCCCCchhHhhhhh
Q 007677          304 D-IKPIADLMVDCTDEKGNNILHLAGEL  330 (593)
Q Consensus       304 ~-~~~~~~~lin~~D~~G~T~LH~A~~~  330 (593)
                      + .|++    ++.+|.+|+||||+|+..
T Consensus       193 ~~~gad----~~~~d~~g~t~l~~A~~~  216 (229)
T d1ixva_         193 EKYGAE----YDLVDNKGAKAEDVALNE  216 (229)
T ss_dssp             HHHCCC----SCCCCTTSCCTGGGCSCH
T ss_pred             HhcCCC----CCCcCCCCCCHHHHHhhH
Confidence            7 4888    789999999999999853

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-32  Score=266.27  Aligned_cols=229  Identities=15%  Similarity=0.012  Sum_probs=180.0

Q ss_pred             cccccchHhHHHHHcCCHHHHHHHHhhCccc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGE---IGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT  102 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T  102 (593)
                      .|.+|+||||.||.+|+.++++.|++. +++   ++.+ |..|+||||+|+..|+.++|++|+++  |++++.+|.+|.|
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~-~a~~~~i~~~-~~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~i~~~d~~g~t   80 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHT   80 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCC
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccccCc-CCCCCCccchHHhhcccccccccccc--cccccccccccch
Confidence            478899999999999999999999986 444   5555 88999999999999999999999999  8999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCccCC---------CCCCCHHHHHHHc---CCHHHHHHHH-Hhcc-cccCCcchhH
Q 007677          103 AVFYAVASESVELVKATMKGNEGIATLPD---------NDGMLPIVRAASL---GRTEVVEFLY-RETK-NSLKDDDCIE  168 (593)
Q Consensus       103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~---------~~g~tpL~~A~~~---g~~~iv~~Ll-~~~~-~~~~~~~g~t  168 (593)
                      |||+|+..|+.++++.|++.+........         ..+.+....+...   ........+. ..+. .+.++..|.|
T Consensus        81 pL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             hhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            99999999999999999987654311111         1111111111111   1111111111 1122 4557889999


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcc
Q 007677          169 LLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQP  248 (593)
Q Consensus       169 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g  248 (593)
                      |||.|+..++.++++.|++........++..|.||||+|++.++          .++++.|++.|++++..+     ..|
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~----------~~~v~~Ll~~gadin~~d-----~~g  225 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA----------ASVLELLLKAGADPTARM-----YGG  225 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----TTS
T ss_pred             cccccccccccccccchhcccccccccccccccccccccccccH----------HHHHHHHHHCCCCCCCCC-----CCC
Confidence            99999999999999999998666655678899999999999999          899999999998887654     889


Q ss_pred             hhHHHHHHHcCcHHHHHHHHHHCCC
Q 007677          249 RELIHDAADRGNVQFLSILIREYPD  273 (593)
Q Consensus       249 ~tpLh~Aa~~g~~~~v~~Ll~~~~~  273 (593)
                      .||||+|+..|+.+++++|+++|++
T Consensus       226 ~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         226 RTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.8e-32  Score=267.53  Aligned_cols=264  Identities=17%  Similarity=0.159  Sum_probs=223.4

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  142 (593)
                      +++|+||.|++.|+.|+|++|+++  |++++.++ ..|.||||+|+..|+.+++++|++.++.. ...+..+.+|.+.|+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~--G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~   80 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHC--CCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHh
Confidence            357999999999999999999999  89998765 57999999999999999999999999886 778889999999999


Q ss_pred             HcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcc---------hhhhccccCCccHHHHHHhcCC
Q 007677          143 SLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHR---------YLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       143 ~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---------~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      ..+..+...+.++... ....+..+.++++.|+..+....+..++....         ......+..|.||||+|+..++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  160 (285)
T d1wdya_          81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH  160 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC
T ss_pred             hcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCC
Confidence            9999999999998877 55567889999999999999999998887532         2233456679999999999998


Q ss_pred             CcccccchhHHHHHHHHHHH-HHhcChHHHHHHhhcchhHHHHHHH----cCcHHHHHHHHHHCCCccccccCCCCchHH
Q 007677          213 GDKDRKNKEAETLVESLWEE-VILLSKQEIWELIEQPRELIHDAAD----RGNVQFLSILIREYPDLMWKADKKDNYTIF  287 (593)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~g~tpLh~Aa~----~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~L  287 (593)
                                .+++++|+++ +++++..+     ..|.++++.+..    .+..+++++|+++|+++ +.+|.. |+|||
T Consensus       161 ----------~~~~~~Ll~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~-g~t~L  223 (285)
T d1wdya_         161 ----------VEVLKILLDEMGADVNACD-----NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER-GKTPL  223 (285)
T ss_dssp             ----------HHHHHHHHHTSCCCTTCCC-----TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTT-SCCHH
T ss_pred             ----------HHHHHHHHhccCCCccccc-----CCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCC-CCCcc
Confidence                      8999999875 55555433     566666665543    34557999999999998 788999 99999


Q ss_pred             HHHHHcCchhHHHHHhcc-cCccccccccccCCCCchhHhhhhhCCCcccccccCchHhhHHHHHHHHHhhhhcCccccc
Q 007677          288 HIAVKNRLEDLFKFIYDI-KPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRD  366 (593)
Q Consensus       288 h~Av~~~~~~iv~~Ll~~-~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~  366 (593)
                      |.|++.|+.+++++|++. |.+    +|.+|.+|+||||+|++.++.++++.|                   +-.|+++|
T Consensus       224 ~~a~~~~~~~~v~~lL~~~g~d----in~~d~~G~TpL~~A~~~~~~eiv~~L-------------------l~~GAd~n  280 (285)
T d1wdya_         224 ILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELL-------------------CKRGASTD  280 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH-------------------HHHSSCSC
T ss_pred             chhhhcCcHHHHHHHHHcCCCC----CcCCCCCCCCHHHHHHHcCCHHHHHHH-------------------HHCCCCCC
Confidence            999999999999999975 666    889999999999999999997766544                   23688888


Q ss_pred             ccCC
Q 007677          367 AKNN  370 (593)
Q Consensus       367 ~~n~  370 (593)
                      .+|.
T Consensus       281 ~~d~  284 (285)
T d1wdya_         281 CGDL  284 (285)
T ss_dssp             CSSC
T ss_pred             cccC
Confidence            8773

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.6e-32  Score=269.81  Aligned_cols=246  Identities=18%  Similarity=0.246  Sum_probs=206.0

Q ss_pred             ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677           27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY  106 (593)
Q Consensus        27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~  106 (593)
                      +..+.|+|+.||..|+.+.|+.|+++ |++++.+ |.+|.||||+|+..|+.++|++|+++  +.+....+..+.||||.
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~-d~~G~T~L~~A~~~g~~eiv~~Ll~~--~~~~~~~~~~~~~~L~~  112 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHA  112 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCcc-CCCCCcHHHHHHhcCCceeeeeeccc--ccccccccccccccccc
Confidence            34467999999999999999999987 7899987 99999999999999999999999999  78888889999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHHHHH
Q 007677          107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAVALQ  184 (593)
Q Consensus       107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~  184 (593)
                      |+..|+.++++.|+++|... ...+..|.+|+++|+..++.+.++.++....  .......+..+.+.        ....
T Consensus       113 a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~--------~~~~  183 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLR--------DARQ  183 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--------HHHH
T ss_pred             cccccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccccc--------cchh
Confidence            99999999999999999885 7889999999999999999999999997654  11111111111111        1122


Q ss_pred             HHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHH
Q 007677          185 LLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFL  264 (593)
Q Consensus       185 Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v  264 (593)
                      .+..........+..|.||||+|+..++          .++++.|++.|++++..+     ..|+||||+|++.|+.++|
T Consensus       184 ~~~~~~~~~~~~~~~g~t~L~~a~~~~~----------~~~~~~Ll~~g~din~~~-----~~g~TpL~~A~~~g~~~iv  248 (291)
T d1s70b_         184 WLNSGHINDVRHAKSGGTALHVAAAKGY----------TEVLKLLIQARYDVNIKD-----YDGWTPLHAAAHWGKEEAC  248 (291)
T ss_dssp             HHHHTCCCCCCCTTTCCCHHHHHHHHTC----------HHHHHHHHTTTCCTTCCC-----TTCCCHHHHHHHTTCHHHH
T ss_pred             hhcccccccccccCCCCChhhHHHHcCC----------hhhhcccccceecccccc-----cCCCCHHHHHHHcCCHHHH
Confidence            2223334445678889999999999998          899999999998887554     7899999999999999999


Q ss_pred             HHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhccc
Q 007677          265 SILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIK  306 (593)
Q Consensus       265 ~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~  306 (593)
                      ++|+++|+++ +.+|.. |+||||+|++    +++++|.+..
T Consensus       249 ~lLl~~Gadv-~~~d~~-G~TaL~~A~e----~~~~~L~~~~  284 (291)
T d1s70b_         249 RILVENLCDM-EAVNKV-GQTAFDVADE----DILGYLEELQ  284 (291)
T ss_dssp             HHHHHTTCCT-TCCCTT-SCCTTTSCCS----GGGHHHHHHH
T ss_pred             HHHHHCCCCC-CCcCCC-CCCHHHHHHH----HHHHHHHHHh
Confidence            9999999998 889999 9999999975    6777776653

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-30  Score=243.70  Aligned_cols=218  Identities=15%  Similarity=0.138  Sum_probs=166.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC--CchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677           64 HGKTALHVAAEANRIDFVKKLLKRM--SAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA  141 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A  141 (593)
                      +|+||||+||+.|+.++|+.|++..  .+++++.+|..|+||||+|+..|+.++++.|+++|++. +..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccc
Confidence            5899999999999999988887631  16788889999999999999999999999999998886 67788888999999


Q ss_pred             HHcCCHHHHHHHHHhcc-----cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCccc
Q 007677          142 ASLGRTEVVEFLYRETK-----NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKD  216 (593)
Q Consensus       142 ~~~g~~~iv~~Ll~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~  216 (593)
                      ...++.++++.+.....     .+.......++++.+...........+...                            
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~----------------------------  132 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER----------------------------  132 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----------------------------
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcc----------------------------
Confidence            99998888887766543     112233334444444444444433333332                            


Q ss_pred             ccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCch
Q 007677          217 RKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLE  296 (593)
Q Consensus       217 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~  296 (593)
                                      ..+....    ....|.+||+.|+..+..++++.+++++.+. +.+|.. |+||||+|+.+|+.
T Consensus       133 ----------------~~~~~~~----~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~d~~-g~t~L~~A~~~g~~  190 (228)
T d1k1aa_         133 ----------------GADIDAV----DIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYS-GSSALHSASGRGLL  190 (228)
T ss_dssp             ----------------TCCTTCC----CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTT-SCBHHHHHHHHTCH
T ss_pred             ----------------ccccccc----cccchhhHHHHHHHhhhhhhhhhhhhhcccc-cccccc-CcchHHHHHHcCCH
Confidence                            2111111    1145678888888888899999999998887 788888 99999999999999


Q ss_pred             hHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccc
Q 007677          297 DLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRL  336 (593)
Q Consensus       297 ~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~  336 (593)
                      +++++|+++|++    +|.+|.+|+||||+|++.++.+++
T Consensus       191 ~~v~~Ll~~Gad----~n~~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         191 PLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             HHHHHHHHTTCC----TTCCCTTSCCTTTTCSSHHHHHHH
T ss_pred             HHHHHHHHCCCC----CCCCCCCCCCHHHHHHhCCCcccc
Confidence            999999999988    788999999999999998876655

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=4.7e-30  Score=251.29  Aligned_cols=232  Identities=19%  Similarity=0.137  Sum_probs=184.6

Q ss_pred             cccchHhHHHHHcCCHHHHHHHHhh-------CccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCC
Q 007677           28 ITRRLKLYRAALNGDWAVAKDIYDK-------YEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIG  100 (593)
Q Consensus        28 ~~~~t~Lh~Aa~~g~~~~v~~Ll~~-------~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g  100 (593)
                      .+|+||||+||..|+.++|+.|+..       .|++++.+ |.+|+||||+|+..|+.++|++|+++  |++++.+|..|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~-d~~G~TpLh~A~~~g~~~iv~~Ll~~--Gad~n~~~~~g  107 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-DCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKSE  107 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcccc-CCCCCeeecccccccccccccccccc--ccccccccccc
Confidence            4699999999999999998877543       47899987 99999999999999999999999999  89999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhcCCC--CCccCCCCCCCHHHHHHHcCCHHH---HHHHHHhcccccCCcchhHHHHHHHH
Q 007677          101 CTAVFYAVASESVELVKATMKGNEG--IATLPDNDGMLPIVRAASLGRTEV---VEFLYRETKNSLKDDDCIELLVQLIE  175 (593)
Q Consensus       101 ~TpLh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~i---v~~Ll~~~~~~~~~~~g~t~L~~A~~  175 (593)
                      .||||.|+..|+.++++.+...+..  .....+..+.++.+.+...+..+.   +..+.+.......             
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  174 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY-------------  174 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC-------------
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccc-------------
Confidence            9999999999999999999876521  225678889999999998876443   3333333220000             


Q ss_pred             cCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHH-HHhcChHHHHHHhhcchhHHHH
Q 007677          176 TGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE-VILLSKQEIWELIEQPRELIHD  254 (593)
Q Consensus       176 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~g~tpLh~  254 (593)
                                  .........+..|.||||+++..++          .+.++.++.. +.+.+.     +|..|.||||+
T Consensus       175 ------------~~~~~~~~~~~~g~t~L~~~~~~~~----------~~~~~~~l~~~~~~~~~-----~d~~g~tpL~~  227 (277)
T d2fo1e1         175 ------------DGAARKDSEKYKGRTALHYAAQVSN----------MPIVKYLVGEKGSNKDK-----QDEDGKTPIML  227 (277)
T ss_dssp             ------------CSGGGTSSSSCCCCCTHHHHHSSCC----------HHHHHHHHHHSCCCTTC-----CCTTCCCHHHH
T ss_pred             ------------cccccccccccCCCCcccccccccc----------ccccccccccccccccc-----cCCCCCCHHHH
Confidence                        0112234456778888888888777          6666654433 333332     34778999999


Q ss_pred             HHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677          255 AADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD  304 (593)
Q Consensus       255 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~  304 (593)
                      |++.|+.+++++|+++|+++ +.+|.. |+||||+|+++|+.+++++|.+
T Consensus       228 A~~~g~~~iv~~Ll~~gadi-n~~d~~-G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         228 AAQEGRIEVVMYLIQQGASV-EAVDAT-DHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCS-SCCCSS-SCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHCcCCC-CCcCCC-CCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999998 889999 9999999999999999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-29  Score=238.43  Aligned_cols=191  Identities=15%  Similarity=0.063  Sum_probs=158.6

Q ss_pred             cCCChHHHHHHHcCCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHH
Q 007677           98 KIGCTAVFYAVASESVELVKATMK----GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQ  172 (593)
Q Consensus        98 ~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~  172 (593)
                      .+|+||||+||+.|+.++++.|++    .|+++ +.+|.+|+||||+|+..|+.+++++|+++++ .+..+..+.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            369999999999999999999885    67786 8899999999999999999999999999998 77778888889999


Q ss_pred             HHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHH
Q 007677          173 LIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELI  252 (593)
Q Consensus       173 A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpL  252 (593)
                      |...++.+.++.+...........+.                                             ....+.+||
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~~~~~~l  114 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEA---------------------------------------------RNYDGLTAL  114 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTC---------------------------------------------CCTTSCCHH
T ss_pred             ccccccccchhhhhhccccccccccc---------------------------------------------ccccccccc
Confidence            98888888877766552211100000                                             002336778


Q ss_pred             HHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCC
Q 007677          253 HDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAP  332 (593)
Q Consensus       253 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~  332 (593)
                      +.+.........+.|.....+.....+.. |.++||.|+..+...+++.+++.|.+    .+.+|..|+||||+|+..|+
T Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~d~~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         115 HVAVNTECQETVQLLLERGADIDAVDIKS-GRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGRGL  189 (228)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTC
T ss_pred             ccccccccchhhhhhhccccccccccccc-hhhHHHHHHHhhhhhhhhhhhhhccc----cccccccCcchHHHHHHcCC
Confidence            88888888888889998888876667777 99999999999999999999999887    77899999999999999999


Q ss_pred             Ccccccc
Q 007677          333 QHRLNVV  339 (593)
Q Consensus       333 ~~~~~~l  339 (593)
                      .++++.|
T Consensus       190 ~~~v~~L  196 (228)
T d1k1aa_         190 LPLVRTL  196 (228)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887766

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-30  Score=245.70  Aligned_cols=199  Identities=19%  Similarity=0.178  Sum_probs=153.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHH----HHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677           64 HGKTALHVAAEANRIDFVKK----LLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV  139 (593)
Q Consensus        64 ~g~T~Lh~Aa~~g~~~~v~~----Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~  139 (593)
                      +|+||||+|+..|+.++++.    +...  ++++|.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~--~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGD--LAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhC--CCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccc
Confidence            58889999998888655444    4444  6778888999999999999999999999999998886 778888999999


Q ss_pred             HHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677          140 RAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN  219 (593)
Q Consensus       140 ~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~  219 (593)
                      +|+..|+.++++.|++.+...                           ...........+|.||||.|+..++       
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~---------------------------~~~~~~~~~~~~~~t~l~~a~~~~~-------  123 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTP---------------------------HLHSILKATNYNGHTCLHLASIHGY-------  123 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTT---------------------------SSSCGGGCCCTTCCCHHHHHHHTTC-------
T ss_pred             cccccccccccchhhhhcccc---------------------------cccccccccccccchhhhHHhhcCC-------
Confidence            999999888888888765400                           0012223345567777777777776       


Q ss_pred             hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHH
Q 007677          220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLF  299 (593)
Q Consensus       220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv  299 (593)
                         .+.++.+++.+...+..+    +.+|.||||+|++.|+.+++++|+++|+|+ +.+|.. |+||||+|+++++.+++
T Consensus       124 ---~~~~~~l~~~~~~~~~~~----~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-~~~~~~-G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         124 ---LGIVELLVSLGADVNAQE----PCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQ-GYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             ---HHHHHHHHHHTCCTTCCC----TTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTT-CCCGGGGCTTSSCHHHH
T ss_pred             ---hhheeeecccCccccccc----ccCCCCccccccccccHHHHHHHHhcCCcc-cccCCC-CCCHHHHHHHCCCHHHH
Confidence               677777777766655432    256889999999999999999999999997 788998 99999999999999999


Q ss_pred             HHHhcccCc
Q 007677          300 KFIYDIKPI  308 (593)
Q Consensus       300 ~~Ll~~~~~  308 (593)
                      ++|++.+.+
T Consensus       195 ~~l~~~~~~  203 (221)
T d1iknd_         195 QQLGQLTLE  203 (221)
T ss_dssp             HHHHTTSCG
T ss_pred             HHHHHcCCc
Confidence            999887655

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=7.2e-31  Score=265.64  Aligned_cols=244  Identities=12%  Similarity=0.028  Sum_probs=138.5

Q ss_pred             cccccchHhHHHHHcCCHHHHHHH--HhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh--cCCC
Q 007677           26 ETITRRLKLYRAALNGDWAVAKDI--YDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN--KIGC  101 (593)
Q Consensus        26 ~~~~~~t~Lh~Aa~~g~~~~v~~L--l~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d--~~g~  101 (593)
                      ++..|+||||.||.+|+.+.++.+  |.+.+++++.+ |.+|.||||+||+.||.++|++|+++  +++++..+  .+|+
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~-~~~g~taL~~Aa~~G~~~~v~~Ll~~--g~~~~~~~~~~~g~  162 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAENY  162 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccccc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCccccccccCCC
Confidence            355666677777777766655542  33346666655 66666777777777777777777766  55555544  3466


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCC--ccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCH
Q 007677          102 TAVFYAVASESVELVKATMKGNEGIA--TLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY  179 (593)
Q Consensus       102 TpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~  179 (593)
                      ||||+||..||.++|++|++.|++..  +..+.+|.||++.|+++||.+++++|++.++      +..++.+.+...++.
T Consensus       163 t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga------~~~~~~~~~~~~~~~  236 (346)
T d2ajaa1         163 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEK  236 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTT
T ss_pred             ChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCC------CcchHHHHHHHcCcH
Confidence            77777777777777777776665431  2233445566666666667777777666654      112233333333333


Q ss_pred             HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcC
Q 007677          180 AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRG  259 (593)
Q Consensus       180 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g  259 (593)
                      ++...++.....     ...+.++++.+...+..+                     ............+.++++.|+..|
T Consensus       237 ~~~~~~~~~~~~-----~~~~~~~l~~a~~~~~~~---------------------~~~~~~~~~~~~~~~~l~~a~~~~  290 (346)
T d2ajaa1         237 YVNPFIARHVNR-----LKEMHDAFKLSNPDGVFD---------------------LVTKSECLQGFYMLRNLIRRNDEV  290 (346)
T ss_dssp             THHHHHHHHHHH-----HHHHHTTTTTTSSSSCCC---------------------CSSHHHHHHHHHHHHHHHHHCCGG
T ss_pred             hhhHHHHHhhcc-----chHHHHHHHHhcccccHh---------------------HHhcccccccchhhhHHHHHhcCC
Confidence            333333322110     011112222222222100                     000111111233478999999999


Q ss_pred             cHHHHHHHHHHCCCcc----ccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677          260 NVQFLSILIREYPDLM----WKADKKDNYTIFHIAVKNRLEDLFKFIYDI  305 (593)
Q Consensus       260 ~~~~v~~Ll~~~~~~~----~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~  305 (593)
                      +.+++++|++.+....    +..+.+ |+||||+|++.|+.+++++|++.
T Consensus       291 ~ld~v~~Ll~~~~~~~~~~~~~~~~~-g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         291 LLDDIRFLLSIPGIKALAPTATIPGD-ANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             GHHHHHHHHTSTTTGGGSSCCSSTTC-CCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             hHHHHHHHHhCcChhhhcccccCCCC-CCcHHHHHHHcCcHHHHHHHhCC
Confidence            9999999998765321    233456 89999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=4.1e-28  Score=227.06  Aligned_cols=204  Identities=17%  Similarity=0.188  Sum_probs=134.5

Q ss_pred             HHHHHHHHHcCCchhhhc-hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh
Q 007677           78 IDFVKKLLKRMSAEDLAK-QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRE  156 (593)
Q Consensus        78 ~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~  156 (593)
                      .|+|++|+++  |++++. .|.+|+||||+||..|+.+++++|++.|+++ +.++..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~--g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQ--GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHC--CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            5889999998  889987 5889999999999999999999999999886 78889999999999998888777666655


Q ss_pred             cc--cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHH
Q 007677          157 TK--NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVI  234 (593)
Q Consensus       157 ~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~  234 (593)
                      ..  .......+.++.+.+.........+.|... +..++.++..|.|||++++..+.          .++++.+++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~----------~~~~~~l~~~~~  147 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNN----------TEAVNILLMHHA  147 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTC----------HHHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCc----------ceeeeeeccccc
Confidence            44  333444556666666666655555555544 44445555556666666555555          455555555544


Q ss_pred             hcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHH
Q 007677          235 LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI  302 (593)
Q Consensus       235 ~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~L  302 (593)
                      +++..+     ..|.||||.|+..|+.++++.|+++|+++ +..|.. |+||||+|+++|+.++|++|
T Consensus       148 ~~~~~d-----~~g~TpL~~A~~~g~~~~v~~Ll~~gad~-n~~d~~-g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         148 NRDAQD-----DKDETPLFLAAREGSYEASKALLDNFANR-EITDHM-DRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCC-----TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccc-----cccccccchhccccHHHHHHHHHHCCCCC-CCcCCC-CCCHHHHHHHcCCHHHHhhc
Confidence            443322     44555555555555555555555555554 455555 55555555555555555543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=231.69  Aligned_cols=191  Identities=16%  Similarity=0.093  Sum_probs=154.7

Q ss_pred             CCChHHHHHHHcCCHHH----HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHH
Q 007677           99 IGCTAVFYAVASESVEL----VKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQL  173 (593)
Q Consensus        99 ~g~TpLh~A~~~g~~~i----v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A  173 (593)
                      +|+||||+|+..|+.++    ++.+...++++ +.+|.+|+||||+|+..|+.+++++|++.++ .+..+..|.+||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccccccccccccccccccccc
Confidence            59999999999999655    45555677776 7899999999999999999999999999988 777788888888888


Q ss_pred             HHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHH
Q 007677          174 IETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIH  253 (593)
Q Consensus       174 ~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh  253 (593)
                      +..++.++++.++.......      ....                                     .......|.||||
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~------~~~~-------------------------------------~~~~~~~~~t~l~  116 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPH------LHSI-------------------------------------LKATNYNGHTCLH  116 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTS------SSCG-------------------------------------GGCCCTTCCCHHH
T ss_pred             cccccccccchhhhhccccc------cccc-------------------------------------ccccccccchhhh
Confidence            88888888887777522110      0000                                     0011145789999


Q ss_pred             HHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCC
Q 007677          254 DAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQ  333 (593)
Q Consensus       254 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~  333 (593)
                      .|+..|+.+.+++|++.++++....+.+ |+||||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.++.
T Consensus       117 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~-G~T~L~~A~~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         117 LASIHGYLGIVELLVSLGADVNAQEPCN-GRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCH
T ss_pred             HHhhcCChhheeeecccCcccccccccC-CCCccccccccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCH
Confidence            9999999999999999999986556677 99999999999999999999999998    889999999999999999886


Q ss_pred             ccccc
Q 007677          334 HRLNV  338 (593)
Q Consensus       334 ~~~~~  338 (593)
                      ++++.
T Consensus       192 ~~~~~  196 (221)
T d1iknd_         192 RIQQQ  196 (221)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.8e-28  Score=227.29  Aligned_cols=206  Identities=17%  Similarity=0.164  Sum_probs=182.0

Q ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcch
Q 007677          113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRY  191 (593)
Q Consensus       113 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~  191 (593)
                      .|+|++|+++|+++....|.+|.||||+||..|+.+++++|++.++ .+..+..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999744468999999999999999999999999998 888999999999999999998887777776555


Q ss_pred             hhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHC
Q 007677          192 LATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREY  271 (593)
Q Consensus       192 ~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~  271 (593)
                      ........|.++.+.+.....          ....+.|.+.+.+++..+     ..|.|||+.++..|..++++.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~L~~~~~~~~~~~-----~~~~t~l~~~~~~~~~~~~~~l~~~~  146 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAI----------EGMVEDLITADADINAAD-----NSGKTALHWAAAVNNTEAVNILLMHH  146 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTC----------TTHHHHHHHTTCCTTCBC-----TTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccc----------hhhhhhhhhhcccccccC-----CCCCCcchhhcccCcceeeeeecccc
Confidence            555667778899998887776          567777777777666544     78899999999999999999999999


Q ss_pred             CCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677          272 PDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       272 ~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      .++ +..|.. |.||||+|+.+|+.+++++|+++|++    ++.+|..|+||||+|++.|+.+++++|
T Consensus       147 ~~~-~~~d~~-g~TpL~~A~~~g~~~~v~~Ll~~gad----~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         147 ANR-DAQDDK-DETPLFLAAREGSYEASKALLDNFAN----REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccc-cccccc-cccccchhccccHHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            998 789999 99999999999999999999999998    789999999999999999998776543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=5.8e-29  Score=251.51  Aligned_cols=240  Identities=13%  Similarity=0.041  Sum_probs=165.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHH---HHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccC--CCCCCC
Q 007677           62 TNHGKTALHVAAEANRIDFVKK---LLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLP--DNDGML  136 (593)
Q Consensus        62 ~~~g~T~Lh~Aa~~g~~~~v~~---Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~--~~~g~t  136 (593)
                      +..|.||||+||+.||.+++++   |++.  +++++.+|.+|+||||+||+.||.++|++|++.|+++ +..  +.+|.|
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~--~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t  163 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYH  163 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhC--CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCC
Confidence            6789999999999999888776   5666  8999999999999999999999999999999999986 444  356899


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677          137 PIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       137 pL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      |||+|+.+||.++|++|++.++    .+..+.++.+|++.|+.+|+.++++.|++. +....       ++.+.+...++
T Consensus       164 ~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~-ga~~~-------~~~~~~~~~~~  235 (346)
T d2ajaa1         164 AFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC-PVMLA-------YAEIHEFEYGE  235 (346)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS-HHHHH-------HHHHCTTTTTT
T ss_pred             hhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC-CCCcc-------hHHHHHHHcCc
Confidence            9999999999999999999886    233456677888888888999999888876 33332       23333333333


Q ss_pred             CcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHH
Q 007677          213 GDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVK  292 (593)
Q Consensus       213 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~  292 (593)
                                ..+...+......         ...+.++++.+...|..+++..--       ...... +.++++.|+.
T Consensus       236 ----------~~~~~~~~~~~~~---------~~~~~~~l~~a~~~~~~~~~~~~~-------~~~~~~-~~~~l~~a~~  288 (346)
T d2ajaa1         236 ----------KYVNPFIARHVNR---------LKEMHDAFKLSNPDGVFDLVTKSE-------CLQGFY-MLRNLIRRND  288 (346)
T ss_dssp             ----------TTHHHHHHHHHHH---------HHHHHTTTTTTSSSSCCCCSSHHH-------HHHHHH-HHHHHHHHCC
T ss_pred             ----------HhhhHHHHHhhcc---------chHHHHHHHHhcccccHhHHhccc-------ccccch-hhhHHHHHhc
Confidence                      1222222211100         011133333333333322211000       011223 5688999999


Q ss_pred             cCchhHHHHHhcccCcccc-ccccccCCCCchhHhhhhhCCCcccccc
Q 007677          293 NRLEDLFKFIYDIKPIADL-MVDCTDEKGNNILHLAGELAPQHRLNVV  339 (593)
Q Consensus       293 ~~~~~iv~~Ll~~~~~~~~-lin~~D~~G~T~LH~A~~~~~~~~~~~l  339 (593)
                      .++.+++++|++.+..... ..+..+.+|+||||+|++.|+.+++++|
T Consensus       289 ~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lL  336 (346)
T d2ajaa1         289 EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL  336 (346)
T ss_dssp             GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred             CChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHH
Confidence            9999999999998765321 1345567899999999999999888766

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=197.00  Aligned_cols=152  Identities=24%  Similarity=0.275  Sum_probs=141.1

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ..||.||.+|+.+.|+.|+++.+.+++.+ |..|+||||+|+ .|+.+++++|+++  +.+++.++..|.+||+.|+..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~-d~~g~t~L~~A~-~~~~~~v~~Ll~~--~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQVMM-FGSTAIALELLKQ--GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHHSC-TTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCcc-CCCCCccccccc-ccccccccccccc--cccccccccccccccccccccc
Confidence            45999999999999999999889999987 999999999987 5899999999998  7899999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      +.++++.++++|+++ +.+|..|.||||+|+..|+.+++++|++....+..|..|.||||+|+..|+.++++.|+++
T Consensus        80 ~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccccccccccc-ccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999986 7889999999999999999999999985433788899999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-25  Score=197.20  Aligned_cols=151  Identities=21%  Similarity=0.281  Sum_probs=121.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ++||.||..|+.++|+.|+++ +.+++.+ |.+|.||||+|+ .|+.|++++|+++  +++++.++..|.+||+.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~-d~~g~TpL~~A~-~~~~ei~~~Ll~~--~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMK-LGNPEIARRLLLR--GANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCC-SSCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHC-CCCcCcc-CCcccccccccc-ccccccccccccc--ccccccccccCccccccccccc
Confidence            678888888888888888886 7778776 888888888775 6788888888887  7788888888888888888888


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAVALQLLHD  188 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  188 (593)
                      +.+.++.|++.+.+. +..+..|.+|||+|+..++.+++++|+++++  .+.+|..|.||||+|++.++.++++.|+++
T Consensus        78 ~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          78 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            888888888888775 6778888888888888888888888888776  455667777777777777777777777654

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-24  Score=192.88  Aligned_cols=142  Identities=19%  Similarity=0.167  Sum_probs=134.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      +|||+||..|+.++|++|+++  |++++.+|.+|.||||+|+ .|+.+++++|+++|+++ +.++..|.+|++.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~--g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHC--CCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            799999999999999999998  8999999999999999886 79999999999999996 8899999999999999999


Q ss_pred             HHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677          147 TEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL  212 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~  212 (593)
                      .+.++.|++.+. .+..+..|.+|+|.|+..++.++++.|+++.+.+.+.+|.+|+||||+|+..++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~  145 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  145 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC
Confidence            999999999988 778899999999999999999999999999887889999999999999999887

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=1.4e-24  Score=215.02  Aligned_cols=194  Identities=13%  Similarity=0.130  Sum_probs=117.6

Q ss_pred             ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCH-------HHHHHHHhcCCCC
Q 007677           54 EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESV-------ELVKATMKGNEGI  126 (593)
Q Consensus        54 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~-------~iv~~Ll~~~~~~  126 (593)
                      +.+++..+|.+|+||||+||..|+.++|++|+++  |++++.+|..|+||||.||..++.       ++++.+..   . 
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~-  169 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C-  169 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G-
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h-
Confidence            3456655577888888888888888888888887  788888888888888888876642       33444332   2 


Q ss_pred             CccCCCCCCCHHHHHHHcCC----HHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCcc
Q 007677          127 ATLPDNDGMLPIVRAASLGR----TEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKET  202 (593)
Q Consensus       127 ~~~~~~~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t  202 (593)
                      ...+|..|+||||+++..+.    ...+++.++                        .++..++.............+.+
T Consensus       170 ~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~------------------------~~~~~l~~~~~~~~~~~~~~~~~  225 (301)
T d1sw6a_         170 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLD------------------------ILMGWIVKKQNRPIQSGTNEKES  225 (301)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHH------------------------HHHHHHHHGGGCCEEEC------
T ss_pred             hhhcccccCCHHHHHHHHhCccccHHHHHHHHH------------------------HHHHHHHhcCCcchhcccccccc
Confidence            24567778888887775443    233333221                        12233334332222233333444


Q ss_pred             HHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCC
Q 007677          203 ALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKD  282 (593)
Q Consensus       203 ~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~  282 (593)
                      +++.+.....                                       .......    .+..++...   ++.+|.. 
T Consensus       226 ~~~~~~~~~~---------------------------------------~~~~~~~----~~~~~~~~~---in~~D~~-  258 (301)
T d1sw6a_         226 KPNDKNGERK---------------------------------------DSILENL----DLKWIIANM---LNAQDSN-  258 (301)
T ss_dssp             -------------------------------------------------CHHHHHC----SHHHHHHHT---TTCCCTT-
T ss_pred             hhHHHHhcch---------------------------------------HHHHHHH----hhHHHHhcC---ccCCCCC-
Confidence            4443322211                                       0000000    012222222   3678998 


Q ss_pred             CchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhh
Q 007677          283 NYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAG  328 (593)
Q Consensus       283 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~  328 (593)
                      |+||||+|+++|+.+++++|++.|++    ++.+|+.|+||||+|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd----~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGAD----PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCC----TTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999    7889999999999996

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3e-23  Score=183.45  Aligned_cols=149  Identities=20%  Similarity=0.202  Sum_probs=137.7

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHc
Q 007677           31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS  110 (593)
Q Consensus        31 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~  110 (593)
                      .||||.||+.|+.++|+.|+++ +++++ . |..|.||||+|+..++.++++.++..  +......+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~-~~~g~t~L~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN-GAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc-CCCcc-c-ccCCCccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            4999999999999999999997 66666 3 89999999999999999999999988  566677788899999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677          111 ESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL  185 (593)
Q Consensus       111 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L  185 (593)
                      .+.++++.+.+++.+. ..++.+|.||||+|+..|+.+++++|++.++ .+..|..|.||||+|+.+|+.++++.|
T Consensus        78 ~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999986 7899999999999999999999999999999 888999999999999999999998754

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.2e-23  Score=185.15  Aligned_cols=151  Identities=21%  Similarity=0.200  Sum_probs=138.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      +.||.||..|+.++|+.|++.. +.+++.+|..|+||||+|+ .|+.+++++|++++.++ +..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            4699999999999999999875 7899999999999999987 58999999999999996 7889999999999999999


Q ss_pred             HHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHH
Q 007677          147 TEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL  225 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~  225 (593)
                      .++++++++.+. .+..+..|.||||.|+..|+.++++.|+.  +.+++.+|.+|+||||+|+..++          .++
T Consensus        81 ~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~--~~~~~~~d~~G~TpL~~A~~~g~----------~~i  148 (156)
T d1bd8a_          81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQRGA----------QDL  148 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT--TSCTTCCCTTSCCHHHHHHHSCC----------HHH
T ss_pred             ccccccccccccccccccCCCCeeeccccccccccccccccc--cccccccCCCCCCHHHHHHHcCC----------HHH
Confidence            999999999998 78889999999999999999999987763  46678899999999999999999          889


Q ss_pred             HHHHHHH
Q 007677          226 VESLWEE  232 (593)
Q Consensus       226 ~~~L~~~  232 (593)
                      +++|+++
T Consensus       149 v~~Ll~h  155 (156)
T d1bd8a_         149 VDILQGH  155 (156)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            8888753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.4e-24  Score=213.26  Aligned_cols=204  Identities=16%  Similarity=0.114  Sum_probs=129.4

Q ss_pred             chhhhch-hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhH
Q 007677           90 AEDLAKQ-NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIE  168 (593)
Q Consensus        90 ~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t  168 (593)
                      +.++|.+ |.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++..      +             
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~------~-------------  155 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNY------D-------------  155 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHH------H-------------
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccch------h-------------
Confidence            4567765 899999999999999999999999999997 789999999999999877520      0             


Q ss_pred             HHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcc
Q 007677          169 LLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQP  248 (593)
Q Consensus       169 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g  248 (593)
                             .+..+   .+++........+|..|+||||+++..+.                                    
T Consensus       156 -------~~~~~---~ll~~l~~~~~~~d~~g~t~lh~~~~~~~------------------------------------  189 (301)
T d1sw6a_         156 -------SGTFE---ALLDYLYPCLILEDSMNRTILHHIIITSG------------------------------------  189 (301)
T ss_dssp             -------TTCHH---HHHHHHGGGGGEECTTCCCHHHHHHHHHT------------------------------------
T ss_pred             -------hhhHH---HHHHHHhhhhhhcccccCCHHHHHHHHhC------------------------------------
Confidence                   01111   11111123345678889999998876543                                    


Q ss_pred             hhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhh
Q 007677          249 RELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAG  328 (593)
Q Consensus       249 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~  328 (593)
                      .++...+++.....+++++++.+.......+.. +.++++.+........++.+.... .....+|.+|.+|+||||+|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~in~~D~~G~TpLh~A~  267 (301)
T d1sw6a_         190 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE-KESKPNDKNGERKDSILENLDLKW-IIANMLNAQDSNGDTCLNIAA  267 (301)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCSHHH-HHHHTTTCCCTTSCCHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhcCCcchhccccc-ccchhHHHHhcchHHHHHHHhhHH-HHhcCccCCCCCCCCHHHHHH
Confidence            011111111112234566677666654556666 778888877776665555432111 111127899999999999999


Q ss_pred             hhCCCcccccccCchHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhh
Q 007677          329 ELAPQHRLNVVSGSALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFS  380 (593)
Q Consensus       329 ~~~~~~~~~~l~~~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~  380 (593)
                      +.|+.++++.|                   +-.|++++.+|++|+||+|+|.
T Consensus       268 ~~g~~~iv~~L-------------------l~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         268 RLGNISIVDAL-------------------LDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHCCHHHHHHH-------------------HHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HcCCHHHHHHH-------------------HHCCCCCCCCCCCCCCHHHHcC
Confidence            99997766554                   2378999999999999999984

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.2e-22  Score=179.54  Aligned_cols=149  Identities=20%  Similarity=0.158  Sum_probs=137.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 007677           66 KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG  145 (593)
Q Consensus        66 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  145 (593)
                      .||||.||+.|+.++|+.|+++  +++++ .|..|+||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~--ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHc--CCCcc-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            5999999999999999999999  67766 6999999999999999999999999988775 677888999999999999


Q ss_pred             CHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHH
Q 007677          146 RTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAET  224 (593)
Q Consensus       146 ~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~  224 (593)
                      +.+++++++.++. ....+.+|.||||+|+..|+.++++.|++. +.+++.+|.+|.||||+|+..|+          .+
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-gad~~~~d~~g~Tpl~~A~~~g~----------~e  147 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGN----------ED  147 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC----------HH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeecccc-ccCCcccCCCCCCHHHHHHHcCC----------HH
Confidence            9999999999988 777899999999999999999999999887 67788999999999999999999          77


Q ss_pred             HHHHH
Q 007677          225 LVESL  229 (593)
Q Consensus       225 ~~~~L  229 (593)
                      ++++|
T Consensus       148 iv~lL  152 (153)
T d1awcb_         148 LAEIL  152 (153)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            77765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-23  Score=177.67  Aligned_cols=120  Identities=16%  Similarity=0.185  Sum_probs=106.4

Q ss_pred             cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCC-hHHHHHH
Q 007677           30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGC-TAVFYAV  108 (593)
Q Consensus        30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~-TpLh~A~  108 (593)
                      +.++||.||.+|+.++|+.|+++ +.+++.+ |..|.||||.|+ .|+.++|++|+++  +++++.+|..|. ||||+|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~-~~~g~t~l~~a~-~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc-CCccccc-cccccccccccc-ccccccccccccc--cccccccccccccccccccc
Confidence            45789999999999999999986 7888887 889999999765 6899999999998  888998888876 6999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 007677          109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR  155 (593)
Q Consensus       109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~  155 (593)
                      +.|+.+++++|+++|+++ +.+|..|+||||+|+++|+.+++++|++
T Consensus        78 ~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999986 7889999999999999999999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.8e-23  Score=174.63  Aligned_cols=122  Identities=20%  Similarity=0.296  Sum_probs=110.0

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE  111 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g  111 (593)
                      ++|+.||..|+.++|+.|+++ +.+++.+ |.+|+||||+|+..|+.+++++|++.  +++++.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~-g~d~n~~-d~~g~t~Lh~A~~~~~~~~~~~ll~~--g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE-VDDPSLP-NDEGITALHNAVCAGHTEIVKFLVQF--GVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST-TSSCCCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCcccc-cccccccccccccccccccccccccc--ccccccccccCcccccccchhh
Confidence            689999999999999999986 7899987 89999999999999999999999999  8999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHHhc
Q 007677          112 SVELVKATMKGNEGIATLPDNDGMLPIVRA--ASLGRTEVVEFLYRET  157 (593)
Q Consensus       112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~  157 (593)
                      +.+++++|+++|+++....+.+|.||++++  ++.|+.+++++|++..
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999997444445688887765  5678999999998764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.87  E-value=1.2e-23  Score=177.08  Aligned_cols=107  Identities=23%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             chHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHc
Q 007677           31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVAS  110 (593)
Q Consensus        31 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~  110 (593)
                      +|||++|+++|+.+.|+.|+++ +.+++.+ +..|.||||+|+..|+.+++++|+++  +++++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~-~~~g~t~lh~A~~~~~~~~~~~ll~~--g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT-TCCCCCC-SSSSCCTTHHHHHHSTTTHHHHHHHS--SCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh-hhccccc-cccccccccccccccccccccccccc--cceeeecccccccchhhhhhc
Confidence            4799999999999999999986 7889887 88999999999999999999999999  899999999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677          111 ESVELVKATMKGNEGIATLPDNDGMLPIVRAA  142 (593)
Q Consensus       111 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~  142 (593)
                      |+.+++++|+++|+++ +.+|.+|.||||+|.
T Consensus        79 ~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSCVKLLLSKGADK-TVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHHHHHHHTTCCCS-SSSSSSTCCCCCTCS
T ss_pred             Cchhhhhhhhcccccc-eeeCCCCCCHHHHHh
Confidence            9999999999999997 889999999999883

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.3e-22  Score=169.37  Aligned_cols=119  Identities=19%  Similarity=0.129  Sum_probs=110.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCC-CHHHHHHH
Q 007677           65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGM-LPIVRAAS  143 (593)
Q Consensus        65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~  143 (593)
                      +.++||+|++.|+.|+|++|+++  |++++.+|..|.||||.|+ .|+.+++++|+++|+++ +.++..|. ||||+|++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~--gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHc--CCccccccccccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            56899999999999999999998  8999999999999999775 79999999999999997 66666665 79999999


Q ss_pred             cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677          144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLH  187 (593)
Q Consensus       144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  187 (593)
                      .|+.+++++|+++++ .+..|..|.||||+|+..|+.++++.|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999998 88899999999999999999999998875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.5e-21  Score=169.36  Aligned_cols=123  Identities=23%  Similarity=0.319  Sum_probs=110.6

Q ss_pred             hHhHHHHHcCCHHHHHHHHhhCccccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677           32 LKLYRAALNGDWAVAKDIYDKYEGEIGVE-----ITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAKQNKIGCTA  103 (593)
Q Consensus        32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp  103 (593)
                      ..|+.|++.++...+..++.+ +.+++..     .+..|+||||+|++.   |+.++|++|+++  |++++.+|.+|+||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadin~~d~~g~Tp   84 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc--CCChhhhhhhhccc
Confidence            457789999999999999886 5554432     266799999999985   678999999999  89999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677          104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK  158 (593)
Q Consensus       104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~  158 (593)
                      ||+||..|+.+++++|+++|+++ +.+|.+|+||||+|++.|+.+++++|++.+.
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            99999999999999999999997 8899999999999999999999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=6.3e-23  Score=172.64  Aligned_cols=105  Identities=20%  Similarity=0.324  Sum_probs=97.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 007677           66 KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG  145 (593)
Q Consensus        66 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g  145 (593)
                      +|||++|++.|+.++|++|+++  |++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~--g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTT--TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHh--hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence            5899999999999999999998  8999999999999999999999999999999999997 789999999999999999


Q ss_pred             CHHHHHHHHHhcc-cccCCcchhHHHHHH
Q 007677          146 RTEVVEFLYRETK-NSLKDDDCIELLVQL  173 (593)
Q Consensus       146 ~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A  173 (593)
                      +.+++++|+++|+ .+..|.+|.||||.|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            9999999999987 666777777777766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.2e-21  Score=164.27  Aligned_cols=119  Identities=23%  Similarity=0.249  Sum_probs=107.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677           67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR  146 (593)
Q Consensus        67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~  146 (593)
                      ++||.||..|+.++|++|+++  +++++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~--g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHc--CCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            689999999999999999998  8999999999999999999999999999999999997 8899999999999999999


Q ss_pred             HHHHHHHHHhcc-cccCC-cchhHHHHHH--HHcCCHHHHHHHHHh
Q 007677          147 TEVVEFLYRETK-NSLKD-DDCIELLVQL--IETGLYAVALQLLHD  188 (593)
Q Consensus       147 ~~iv~~Ll~~~~-~~~~~-~~g~t~L~~A--~~~~~~~~v~~Ll~~  188 (593)
                      .+++++|+++++ .+..+ .++.++++.+  ...|+.++++.|+..
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            999999999998 55443 4577776655  577889999999875

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1e-18  Score=153.33  Aligned_cols=119  Identities=15%  Similarity=0.103  Sum_probs=107.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhch------hcCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCCCHH
Q 007677           68 ALHVAAEANRIDFVKKLLKRMSAEDLAKQ------NKIGCTAVFYAVAS---ESVELVKATMKGNEGIATLPDNDGMLPI  138 (593)
Q Consensus        68 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL  138 (593)
                      .|..|++.++.+.+..++..  +.+++.+      +..|+||||+|++.   |+.+++++|+++|+++ +.+|.+|+|||
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpL   85 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHc--CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccc
Confidence            45578899999999999887  5555443      77899999999975   6899999999999997 88999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677          139 VRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDH  189 (593)
Q Consensus       139 ~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  189 (593)
                      |+|+..|+.+++++|+++++ .+..|..|.||||+|++.|+.++++.|++..
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999998 8889999999999999999999999999873