Citrus Sinensis ID: 007698
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | 2.2.26 [Sep-21-2011] | |||||||
| Q66HD0 | 804 | Endoplasmin OS=Rattus nor | yes | no | 0.809 | 0.595 | 0.499 | 1e-129 | |
| Q95M18 | 804 | Endoplasmin OS=Bos taurus | yes | no | 0.809 | 0.595 | 0.500 | 1e-128 | |
| P08113 | 802 | Endoplasmin OS=Mus muscul | yes | no | 0.809 | 0.597 | 0.499 | 1e-127 | |
| P08110 | 795 | Endoplasmin OS=Gallus gal | yes | no | 0.809 | 0.602 | 0.495 | 1e-127 | |
| P41148 | 804 | Endoplasmin OS=Canis fami | yes | no | 0.809 | 0.595 | 0.497 | 1e-126 | |
| Q29092 | 804 | Endoplasmin OS=Sus scrofa | yes | no | 0.809 | 0.595 | 0.499 | 1e-126 | |
| Q4R520 | 804 | Endoplasmin OS=Macaca fas | N/A | no | 0.809 | 0.595 | 0.499 | 1e-125 | |
| P14625 | 803 | Endoplasmin OS=Homo sapie | yes | no | 0.809 | 0.596 | 0.499 | 1e-125 | |
| P51819 | 703 | Heat shock protein 83 OS= | N/A | no | 0.805 | 0.678 | 0.487 | 1e-125 | |
| Q5R6F7 | 804 | Endoplasmin OS=Pongo abel | yes | no | 0.809 | 0.595 | 0.497 | 1e-124 |
| >sp|Q66HD0|ENPL_RAT Endoplasmin OS=Rattus norvegicus GN=Hsp90b1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 251/503 (49%), Positives = 346/503 (68%), Gaps = 24/503 (4%)
Query: 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDL 139
EKF +QAEV+R+M LI++SLY +KE+FLREL+SNASDALDK+R +S+T+ + L +L
Sbjct: 73 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEEL 132
Query: 140 EIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNG-LI 198
++IK D E + +TDTG+GMT+EELV LGTIA+SGTS+FL + E + G LI
Sbjct: 133 TVKIKCDREKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELI 192
Query: 199 GQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIREETDPE-KLLKRGTQI 257
GQFGVGFYSAFLVA KV+V++K +D Q++WE++++ S + DP L RGT I
Sbjct: 193 GQFGVGFYSAFLVADKVIVTSKH-NNDTQHIWESDSNEFSVI----ADPRGNTLGRGTTI 247
Query: 258 TLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIE--VEEEEKPE------ 309
TL LKE + ++ E I+ LV+ YSQF++FPIY W K+ T+E +EE+E +
Sbjct: 248 TLVLKE-EASDYLELDTIKNLVRKYSQFINFPIYVWSSKTETVEEPLEEDETAQEEKEEA 306
Query: 310 ---EGEEQPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEF 366
E+ E EKK K + WDWEL N+ KPIW R KE+E+DEY FYK E
Sbjct: 307 DDEAAVEEEEEEKKPKTKKVEKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKES 366
Query: 367 LDPLAYTHFTTEGEVEFRSVLYIPGMGPLNN-EEIMNPKTKNIRLYVKRVFISDDFDGEL 425
DP+AY HFT EGEV F+S+L++P P +E + K+ I+LYV+RVFI+DDF ++
Sbjct: 367 DDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDF-HDM 425
Query: 426 FPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYK 485
P+YL+FVKGVVDSDDLPLNVSRE LQ+ ++++++RK+LVRKT DMI+ I+ + +
Sbjct: 426 MPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADEKYND--- 482
Query: 486 KFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLA 545
FW+ FG +KLG +ED N RLA LLRF +S ++ SLD+YVE M EKQ+ IY++A
Sbjct: 483 TFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHSTDITSLDQYVERMKEKQDKIYFMA 542
Query: 546 TDSLKSAKSAPFLEKLVQKDIEV 568
S K A+S+PF+E+L++K EV
Sbjct: 543 GSSRKEAESSPFVERLLKKGYEV 565
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Molecular chaperone that functions in the processing and transport of secreted proteins. Functions in endoplasmic reticulum associated degradation (ERAD). Has ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q95M18|ENPL_BOVIN Endoplasmin OS=Bos taurus GN=HSP90B1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P08113|ENPL_MOUSE Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P08110|ENPL_CHICK Endoplasmin OS=Gallus gallus GN=HSP90B1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P41148|ENPL_CANFA Endoplasmin OS=Canis familiaris GN=HSP90B1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q29092|ENPL_PIG Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3 | Back alignment and function description |
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| >sp|Q4R520|ENPL_MACFA Endoplasmin OS=Macaca fascicularis GN=HSP90B1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P14625|ENPL_HUMAN Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P51819|HSP83_IPONI Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5R6F7|ENPL_PONAB Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | ||||||
| 224099261 | 791 | predicted protein [Populus trichocarpa] | 0.952 | 0.713 | 0.870 | 0.0 | |
| 359473642 | 792 | PREDICTED: heat shock protein 83-like [V | 0.952 | 0.712 | 0.842 | 0.0 | |
| 224111838 | 793 | predicted protein [Populus trichocarpa] | 0.952 | 0.711 | 0.847 | 0.0 | |
| 356499958 | 794 | PREDICTED: heat shock protein 83-like [G | 0.945 | 0.705 | 0.826 | 0.0 | |
| 297738210 | 750 | unnamed protein product [Vitis vinifera] | 0.923 | 0.729 | 0.830 | 0.0 | |
| 15228059 | 780 | Chaperone protein htpG family protein [A | 0.944 | 0.716 | 0.822 | 0.0 | |
| 20453106 | 780 | At2g04030/F3C11.14 [Arabidopsis thaliana | 0.944 | 0.716 | 0.821 | 0.0 | |
| 356495574 | 793 | PREDICTED: heat shock cognate 90 kDa pro | 0.945 | 0.706 | 0.812 | 0.0 | |
| 449463523 | 781 | PREDICTED: heat shock protein 83-like [C | 0.942 | 0.714 | 0.833 | 0.0 | |
| 30678090 | 777 | Chaperone protein htpG family protein [A | 0.939 | 0.715 | 0.817 | 0.0 |
| >gi|224099261|ref|XP_002311417.1| predicted protein [Populus trichocarpa] gi|222851237|gb|EEE88784.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 983 bits (2542), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/573 (87%), Positives = 536/573 (93%), Gaps = 9/573 (1%)
Query: 1 MAPVLSRTLAT-TSLVSLPTSTPFSFKHSNNKAFNFRSAFLPRSGGL----TCAGLKWNL 55
MAPVLSR+LAT SL+SLP+S +H NNK N RS FL ++ GL +C+GLKW L
Sbjct: 1 MAPVLSRSLATYASLISLPSS----IRHPNNKVLNLRSVFLSQNNGLKKEFSCSGLKWKL 56
Query: 56 QKRNKRVGIRCDAAVADKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNA 115
+KRN R+ +RC+AAVA+KEA DTSGEKFEYQAEVSRL+DLIVHSLYSHKEVFLRELVSNA
Sbjct: 57 EKRNDRISVRCEAAVAEKEATDTSGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNA 116
Query: 116 SDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQ 175
SDALDKLRFLSVTEPSLLGDAGDLEIRI+PDP+NGTITITDTGIGMTKEELVDCLGTIAQ
Sbjct: 117 SDALDKLRFLSVTEPSLLGDAGDLEIRIRPDPDNGTITITDTGIGMTKEELVDCLGTIAQ 176
Query: 176 SGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEAD 235
SGTSKFLKALKEN D GADNGLIGQFGVGFYSAFLVA+KVVVSTKSP+SDKQ+VWE+EAD
Sbjct: 177 SGTSKFLKALKENKDAGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQHVWESEAD 236
Query: 236 SSSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQE 295
SSSYVI+EETDPEKLL+RGTQITLYL+EDDKYEFS+P RIQGLVKNYSQFV+FPIYTW+E
Sbjct: 237 SSSYVIKEETDPEKLLRRGTQITLYLREDDKYEFSDPVRIQGLVKNYSQFVAFPIYTWEE 296
Query: 296 KSRTIEVEEEEKPEEGEEQPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEY 355
KSRT+EVEEEE+P+EGEE PEGEKK K TKTEKYWDWEL NETKPIWMRNPKE+EKDEY
Sbjct: 297 KSRTVEVEEEEEPKEGEEVPEGEKKKTKKTKTEKYWDWELVNETKPIWMRNPKEVEKDEY 356
Query: 356 HEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRV 415
EFYKKTFNEFLDPLAY HFT EGEVEFRSVLYIPGMGPLNNEE++NPKTKNIRLYVKRV
Sbjct: 357 QEFYKKTFNEFLDPLAYAHFTIEGEVEFRSVLYIPGMGPLNNEEVINPKTKNIRLYVKRV 416
Query: 416 FISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDI 475
FISDDFDGELFPRYLSFV+GVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQD+
Sbjct: 417 FISDDFDGELFPRYLSFVRGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDL 476
Query: 476 SQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMG 535
S+SENKEDYKKFWENFGRFLKLGCVEDSGNHKR+ PLLRFYTSKSEEEL SLDEY+ENMG
Sbjct: 477 SESENKEDYKKFWENFGRFLKLGCVEDSGNHKRITPLLRFYTSKSEEELTSLDEYIENMG 536
Query: 536 EKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEV 568
E Q AIYYLATDSLKSAKSAPFLEKLVQKDIEV
Sbjct: 537 ENQKAIYYLATDSLKSAKSAPFLEKLVQKDIEV 569
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473642|ref|XP_002267463.2| PREDICTED: heat shock protein 83-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224111838|ref|XP_002315997.1| predicted protein [Populus trichocarpa] gi|222865037|gb|EEF02168.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356499958|ref|XP_003518802.1| PREDICTED: heat shock protein 83-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297738210|emb|CBI27411.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|15228059|ref|NP_178487.1| Chaperone protein htpG family protein [Arabidopsis thaliana] gi|16930685|gb|AAL32008.1|AF436826_1 At2g04030/F3C11.14 [Arabidopsis thaliana] gi|4914387|gb|AAD32922.1| putative heat shock protein [Arabidopsis thaliana] gi|15450723|gb|AAK96633.1| At2g04030/F3C11.14 [Arabidopsis thaliana] gi|25090168|gb|AAN72245.1| At2g04030/F3C11.14 [Arabidopsis thaliana] gi|330250684|gb|AEC05778.1| Chaperone protein htpG family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|20453106|gb|AAM19795.1| At2g04030/F3C11.14 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356495574|ref|XP_003516650.1| PREDICTED: heat shock cognate 90 kDa protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449463523|ref|XP_004149483.1| PREDICTED: heat shock protein 83-like [Cucumis sativus] gi|449518043|ref|XP_004166053.1| PREDICTED: heat shock protein 83-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|30678090|ref|NP_849932.1| Chaperone protein htpG family protein [Arabidopsis thaliana] gi|330250685|gb|AEC05779.1| Chaperone protein htpG family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | ||||||
| TAIR|locus:2049651 | 780 | CR88 [Arabidopsis thaliana (ta | 0.944 | 0.716 | 0.761 | 8.7e-230 | |
| TAIR|locus:2077352 | 799 | Hsp89.1 "HEAT SHOCK PROTEIN 89 | 0.880 | 0.652 | 0.649 | 3.8e-181 | |
| WB|WBGene00011480 | 760 | enpl-1 [Caenorhabditis elegans | 0.810 | 0.631 | 0.458 | 5e-115 | |
| UNIPROTKB|F1NWB7 | 795 | HSP90B1 "Endoplasmin" [Gallus | 0.819 | 0.610 | 0.472 | 1.3e-114 | |
| UNIPROTKB|P08110 | 795 | HSP90B1 "Endoplasmin" [Gallus | 0.819 | 0.610 | 0.472 | 1.3e-114 | |
| UNIPROTKB|Q95M18 | 804 | HSP90B1 "Endoplasmin" [Bos tau | 0.807 | 0.594 | 0.474 | 7.3e-114 | |
| UNIPROTKB|F1P8N6 | 803 | HSP90B1 "Endoplasmin" [Canis l | 0.807 | 0.595 | 0.474 | 9.4e-114 | |
| UNIPROTKB|P41148 | 804 | HSP90B1 "Endoplasmin" [Canis l | 0.807 | 0.594 | 0.474 | 9.4e-114 | |
| UNIPROTKB|P14625 | 803 | HSP90B1 "Endoplasmin" [Homo sa | 0.807 | 0.595 | 0.470 | 9.4e-114 | |
| UNIPROTKB|Q29092 | 804 | HSP90B1 "Endoplasmin" [Sus scr | 0.807 | 0.594 | 0.474 | 9.4e-114 |
| TAIR|locus:2049651 CR88 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2217 (785.5 bits), Expect = 8.7e-230, P = 8.7e-230
Identities = 434/570 (76%), Positives = 474/570 (83%)
Query: 1 MAPVLSRXXXXXXXXXXXXXXPFSFKHSNNKAFNFRSAFLPRSGGL-TCAGLKWNLQKRN 59
MAP LSR P S + S+ RS+FLP G L T WNL+KR
Sbjct: 1 MAPALSRSLYTSPLTSVPIT-PVSSRLSH-----LRSSFLPHGGALRTGVSCSWNLEKRC 54
Query: 60 KRVGIRCDAAVADKEAPDT-SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDA 118
R ++CDAAVA+KE + SGEKFEYQAEVSRL+DLIVHSLYSHKEVFLRELVSNASDA
Sbjct: 55 NRFAVKCDAAVAEKETTEEGSGEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDA 114
Query: 119 LDKLRFLSVTEPSLLGDAGDLEIRIKPDPENXXXXXXXXXXXXXKEELVDCLGTIAQSGT 178
LDKLRFLSVTEPSLLGD GDLEIRIKPDP+N KEEL+DCLGTIAQSGT
Sbjct: 115 LDKLRFLSVTEPSLLGDGGDLEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGT 174
Query: 179 SKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSS 238
SKFLKALKEN DLGADNGLIGQFGVGFYSAFLVA+KVVVSTKSP+SDKQYVWE+ ADSSS
Sbjct: 175 SKFLKALKENKDLGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWESVADSSS 234
Query: 239 YVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSR 298
Y+IREETDP+ +L+RGTQITLYL+EDDKYEF+E TRI+ LVKNYSQFV FPIYTWQEKSR
Sbjct: 235 YLIREETDPDNILRRGTQITLYLREDDKYEFAESTRIKNLVKNYSQFVGFPIYTWQEKSR 294
Query: 299 TIEVXXXXXXXXXXXXXXXXXXXXXXXXXXXYWDWELANETKPIWMRNPKEIEKDEYHEF 358
TIEV YWDWELANETKP+WMRN KE+EK EY+EF
Sbjct: 295 TIEVEEDEPVKEGEEGEPKKKKTTKTEK---YWDWELANETKPLWMRNSKEVEKGEYNEF 351
Query: 359 YKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418
YKK FNEFLDPLA+THFTTEGEVEFRS+LYIPGMGPLNNE++ NPKTKNIRLYVKRVFIS
Sbjct: 352 YKKAFNEFLDPLAHTHFTTEGEVEFRSILYIPGMGPLNNEDVTNPKTKNIRLYVKRVFIS 411
Query: 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQS 478
DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRL+RKTFDMIQ+IS+S
Sbjct: 412 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLIRKTFDMIQEISES 471
Query: 479 ENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQ 538
ENKEDYKKFWENFGRFLKLGC+ED+GNHKR+ PLLRF++SK+EEEL SLD+Y+ENMGE Q
Sbjct: 472 ENKEDYKKFWENFGRFLKLGCIEDTGNHKRITPLLRFFSSKNEEELTSLDDYIENMGENQ 531
Query: 539 NAIYYLATDSLKSAKSAPFLEKLVQKDIEV 568
AIYYLATDSLKSAKSAPFLEKL+QKDIEV
Sbjct: 532 KAIYYLATDSLKSAKSAPFLEKLIQKDIEV 561
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| TAIR|locus:2077352 Hsp89.1 "HEAT SHOCK PROTEIN 89.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00011480 enpl-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NWB7 HSP90B1 "Endoplasmin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P08110 HSP90B1 "Endoplasmin" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q95M18 HSP90B1 "Endoplasmin" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1P8N6 HSP90B1 "Endoplasmin" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P41148 HSP90B1 "Endoplasmin" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P14625 HSP90B1 "Endoplasmin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q29092 HSP90B1 "Endoplasmin" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00081050 | hypothetical protein (791 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | fgenesh4_pm.C_LG_XV000408 | • | • | 0.803 | |||||||
 | fgenesh4_pm.C_LG_IV000317 | • | 0.800 | ||||||||
 | fgenesh4_pg.C_LG_II001977 | • | 0.800 | ||||||||
 | estExt_Genewise1_v1.C_440672 | • | 0.800 | ||||||||
 | eugene3.26620001 | • | 0.458 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 592 | |||
| PRK05218 | 613 | PRK05218, PRK05218, heat shock protein 90; Provisi | 0.0 | |
| COG0326 | 623 | COG0326, HtpG, Molecular chaperone, HSP90 family [ | 0.0 | |
| PTZ00272 | 701 | PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp | 1e-147 | |
| PTZ00130 | 814 | PTZ00130, PTZ00130, heat shock protein 90; Provisi | 1e-130 | |
| pfam00183 | 529 | pfam00183, HSP90, Hsp90 protein | 1e-113 | |
| PRK14083 | 601 | PRK14083, PRK14083, HSP90 family protein; Provisio | 2e-38 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 2e-09 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 1e-08 | |
| pfam13589 | 134 | pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr | 2e-08 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 5e-08 | |
| COG1389 | 538 | COG1389, COG1389, DNA topoisomerase VI, subunit B | 1e-04 | |
| PRK04184 | 535 | PRK04184, PRK04184, DNA topoisomerase VI subunit B | 0.001 |
| >gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional | Back alignment and domain information |
|---|
Score = 581 bits (1500), Expect = 0.0
Identities = 227/493 (46%), Positives = 308/493 (62%), Gaps = 52/493 (10%)
Query: 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAG 137
+ E E+QAEV +L+ L++HSLYS+KE+FLREL+SNASDA+DKLRF ++T+P+L G
Sbjct: 1 MAMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDG 60
Query: 138 DLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGL 197
DL+IRI D E T+TI+D GIGMT+EE+++ LGTIA+SGT +FL+ LK + D+ L
Sbjct: 61 DLKIRISFDKEARTLTISDNGIGMTREEVIENLGTIAKSGTKEFLEKLKGDQK--KDSQL 118
Query: 198 IGQFGVGFYSAFLVAQKVVVSTKSPRSDKQ-YVWEAEADSSSYVIREETDPEKLLKRGTQ 256
IGQFGVGFYSAF+VA KV V T+S + WE++ Y I E E RGT+
Sbjct: 119 IGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDG-EGEYTIEEIEKEE----RGTE 173
Query: 257 ITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEKPEEGEEQPE 316
ITL+LKED+ EF + RI+ ++K YS F+ PI +E EEEE
Sbjct: 174 ITLHLKEDED-EFLDEWRIRSIIKKYSDFIPVPIK--------LEKEEEET--------- 215
Query: 317 GEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFT 376
N +W R+ EI +EY EFYK ++F DPL + H
Sbjct: 216 -------------------INSASALWTRSKSEITDEEYKEFYKHLAHDFDDPLFWIHNN 256
Query: 377 TEGEVEFRSVLYIPGMGPLNNEEIMNPKTKN-IRLYVKRVFISDDFDGELFPRYLSFVKG 435
EG E+ +LYIP P ++ N K ++LYVKRVFI DD + EL P YL FVKG
Sbjct: 257 VEGPFEYTGLLYIPKKAP---FDLFNRDRKGGLKLYVKRVFIMDDAE-ELLPEYLRFVKG 312
Query: 436 VVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFL 495
V+DS+DLPLNVSREILQE R+V+ +RK + +K D ++ +++ ++E Y+KFW+ FG L
Sbjct: 313 VIDSEDLPLNVSREILQEDRVVKKIRKAITKKVLDELEKLAK-NDREKYEKFWKEFGPVL 371
Query: 496 KLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSA 555
K G ED N ++LA LLRF ++ E + +SL EYVE M E Q IYY+ DS ++AK++
Sbjct: 372 KEGLYEDFANREKLAKLLRFASTH-EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNS 430
Query: 556 PFLEKLVQKDIEV 568
P LE +K IEV
Sbjct: 431 PHLELFKKKGIEV 443
|
Length = 613 |
| >gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein | Back alignment and domain information |
|---|
| >gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >gnl|CDD|224307 COG1389, COG1389, DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| KOG0020 | 785 | consensus Endoplasmic reticulum glucose-regulated | 100.0 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 100.0 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 100.0 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 100.0 | |
| KOG0019 | 656 | consensus Molecular chaperone (HSP90 family) [Post | 100.0 | |
| PRK05218 | 613 | heat shock protein 90; Provisional | 100.0 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 100.0 | |
| PF00183 | 531 | HSP90: Hsp90 protein; InterPro: IPR001404 Molecula | 100.0 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.83 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.74 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.72 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 99.7 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.42 | |
| KOG1979 | 694 | consensus DNA mismatch repair protein - MLH1 famil | 99.3 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.26 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.2 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.17 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.0 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 98.79 | |
| KOG1978 | 672 | consensus DNA mismatch repair protein - MLH2/PMS1/ | 98.7 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 98.68 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 98.63 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 98.61 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 98.61 | |
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.55 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 98.45 | |
| KOG1977 | 1142 | consensus DNA mismatch repair protein - MLH3 famil | 98.03 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 97.51 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.49 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 97.19 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.07 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 96.95 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 96.94 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.94 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.89 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 96.89 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 96.8 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 96.76 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 96.75 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 96.72 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 96.65 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 96.54 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 96.51 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 96.42 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 96.4 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 96.33 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 96.3 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 96.29 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 96.25 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 96.17 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 96.15 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.08 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.07 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 96.04 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 96.03 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 95.99 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 95.97 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 95.94 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 95.82 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 95.76 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.75 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 95.65 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 95.64 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 95.57 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 95.56 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 95.55 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 95.49 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 95.49 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 95.43 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 95.17 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 95.12 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 94.69 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 94.62 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 94.35 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 93.91 | |
| PRK13557 | 540 | histidine kinase; Provisional | 92.48 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 92.2 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 92.06 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 92.01 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 91.42 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 90.98 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 90.82 | |
| KOG0787 | 414 | consensus Dehydrogenase kinase [Signal transductio | 90.67 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 90.44 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 90.32 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 89.9 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 89.8 | |
| COG4251 | 750 | Bacteriophytochrome (light-regulated signal transd | 87.42 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 86.76 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 83.22 | |
| COG0643 | 716 | CheA Chemotaxis protein histidine kinase and relat | 80.36 |
| >KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-137 Score=1078.47 Aligned_cols=504 Identities=51% Similarity=0.897 Sum_probs=464.8
Q ss_pred CCCceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeC
Q 007698 78 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDT 157 (592)
Q Consensus 78 ~~~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DN 157 (592)
+.+++|.||++++|||++|+|+||+|+++||||||+||+||++|+|++++|++..++...++.|+|..|++++.|.|+|.
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~Dt 149 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDT 149 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhhhhcccchhHHHHhhhcccCC-CCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCC
Q 007698 158 GIGMTKEELVDCLGTIAQSGTSKFLKALKENNDLG-ADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADS 236 (592)
Q Consensus 158 GiGMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~-~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~ 236 (592)
|||||++||+++|||||+|||++|++++.+.++.+ .-.++||||||||||||+|||+|+|+|+++ ++.+|.|+|++
T Consensus 150 GiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhN-dD~QyiWESda-- 226 (785)
T KOG0020|consen 150 GIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHN-DDSQYIWESDA-- 226 (785)
T ss_pred cCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccC-CccceeeeccC--
Confidence 99999999999999999999999999998654321 234799999999999999999999999997 68899999975
Q ss_pred CceEEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccc--cccCCCC-C--
Q 007698 237 SSYVIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVE--EEEKPEE-G-- 311 (592)
Q Consensus 237 ~~y~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~--~~~~~~~-~-- 311 (592)
+.|+|...++ +++.++||.|+|+||+++. +||++.+++++|++||+|+.|||++|..|++++|++ ++|+..+ +
T Consensus 227 n~FsvseDpr-g~tL~RGt~ItL~LkeEA~-dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~~e 304 (785)
T KOG0020|consen 227 NSFSVSEDPR-GNTLGRGTEITLYLKEEAG-DYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDSTE 304 (785)
T ss_pred cceeeecCCC-CCcccCccEEEEEehhhhh-hhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccccccccccccc
Confidence 6999998874 5678999999999999999 999999999999999999999999999997655443 4332211 1
Q ss_pred -CC---CcccccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEE
Q 007698 312 -EE---QPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVL 387 (592)
Q Consensus 312 -~~---~~~~~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~ll 387 (592)
++ ++++++|+|+|++.++.|+|+++|+.+|||+|+|++|+++||..||++++.|+.+||+|+||.+||.++|++||
T Consensus 305 d~ea~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds~dPma~~HF~aEGeVtFksiL 384 (785)
T KOG0020|consen 305 DKEAAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDSTDPMAYIHFTAEGEVTFKSIL 384 (785)
T ss_pred chhhhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccccCccceeeeeccccEEEEEEE
Confidence 11 12223457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCcccccc-ccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHH
Q 007698 388 YIPGMGPLNNEEIMN-PKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVR 466 (592)
Q Consensus 388 yiP~~~p~~~~~~~~-~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~ 466 (592)
|+|+.+|-++|+-+. ....+|+|||+||||+|+++ +++|.||+||||||||+|||||||||+||++.+|++|+|.|++
T Consensus 385 yVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~-dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHkllKvIkKKLvr 463 (785)
T KOG0020|consen 385 YVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFH-DMMPKYLSFIKGVVDSDDLPLNVSRETLQQHKLLKVIKKKLVR 463 (785)
T ss_pred EeCCCCchHHHHHhccccccceeEEEEEEEecchHH-HHhHHHHHHHhhccCcCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999886554 34579999999999999996 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCChHHHHH-HHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEe
Q 007698 467 KTFDMIQDISQSENKEDYKK-FWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLA 545 (592)
Q Consensus 467 k~~~~l~~la~~e~~e~y~~-f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~ 545 (592)
|+++||+++|. ++|.. ||++||.+||+|++||..||.+||+||||+||+++++.+||++|++|||+.|+.|||++
T Consensus 464 K~LDmikKia~----e~~~d~FW~EFgtniKLGviED~sNr~rLAKLLrFqss~~~~~~TsLdqYveRMK~kQ~~Iyyma 539 (785)
T KOG0020|consen 464 KVLDMIKKIAG----EKYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLRFQSSNHPTKITSLDQYVERMKEKQDKIYYMA 539 (785)
T ss_pred HHHHHHHHhhc----cccchHHHHHhccceeeeeeeCcccHHHHHHHHhhhccCCCCCcccHHHHHHHHhhccccEEEec
Confidence 99999999983 57776 99999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCHHHHhcChHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 546 TDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 546 ~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|.|+++++.|||+|.|.+|||||||+++||||||+| |-+|+||+|.
T Consensus 540 Gssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQ 586 (785)
T KOG0020|consen 540 GSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQ 586 (785)
T ss_pred CCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHh
Confidence 999999999999999999999999999999999999 9999999984
|
|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell [] | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 592 | ||||
| 2o1u_A | 666 | Structure Of Full Length Grp94 With Amp-Pnp Bound L | 1e-121 | ||
| 2o1w_A | 506 | Structure Of N-Terminal Plus Middle Domains (N+m) O | 1e-121 | ||
| 1y4s_A | 559 | Conformation Rearrangement Of Heat Shock Protein 90 | 4e-94 | ||
| 2iop_A | 624 | Crystal Structure Of Full-Length Htpg, The Escheric | 8e-94 | ||
| 2o1t_A | 450 | Structure Of Middle Plus C-Terminal Domains (M+c) O | 4e-64 | ||
| 3hjc_A | 444 | Crystal Structure Of The Carboxy-Terminal Domain Of | 9e-60 | ||
| 3q6m_A | 448 | Crystal Structure Of Human Mc-Hsp90 In C2221 Space | 5e-58 | ||
| 2cg9_A | 677 | Crystal Structure Of An Hsp90-Sba1 Closed Chaperone | 4e-57 | ||
| 3pry_A | 268 | Crystal Structure Of The Middle Domain Of Human Hsp | 7e-57 | ||
| 2cge_A | 405 | Crystal Structure Of An Hsp90-Sba1 Closed Chaperone | 2e-56 | ||
| 1usu_A | 260 | The Structure Of The Complex Between Aha1 And Hsp90 | 3e-56 | ||
| 1hk7_A | 288 | Middle Domain Of Hsp90 Length = 288 | 5e-56 | ||
| 1usv_A | 260 | The Structure Of The Complex Between Aha1 And Hsp90 | 5e-56 | ||
| 1y6z_A | 263 | Middle Domain Of Plasmodium Falciparum Putative Hea | 6e-54 | ||
| 3peh_A | 281 | Crystal Structure Of The N-Terminal Domain Of An Hs | 8e-54 | ||
| 3h80_A | 231 | Crystal Structure Of The Amino-Terminal Domain Of H | 2e-51 | ||
| 2jki_A | 223 | Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng | 3e-51 | ||
| 1u2o_A | 236 | Crystal Structure Of The N-Domain Of Grp94 Lacking | 9e-51 | ||
| 1u0y_A | 273 | N-Domain Of Grp94, With The Charged Domain, In Comp | 1e-50 | ||
| 1qy5_A | 269 | Crystal Structure Of The N-Domain Of The Er Hsp90 C | 1e-50 | ||
| 2xcm_A | 214 | Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord | 2e-50 | ||
| 2esa_A | 236 | Grp94 N-Terminal Domain Bound To Geldanamycin: Effe | 3e-50 | ||
| 2gq0_A | 303 | Crystal Structure Of The Middle Domain Of Htpg, The | 4e-50 | ||
| 1uym_A | 220 | Human Hsp90-Beta With Pu3 (9-Butyl-8(3,4,5-Trimetho | 1e-49 | ||
| 2ye7_A | 252 | Hsp90 Inhibitors And Drugs From Fragment And Virtua | 2e-49 | ||
| 3nmq_A | 239 | Hsp90b N-Terminal Domain In Complex With Ec44, A Py | 2e-49 | ||
| 2ye2_A | 252 | Hsp90 Inhibitors And Drugs From Fragment And Virtua | 2e-49 | ||
| 4egh_A | 232 | Hsp90-Alpha Atpase Domain In Complex With (4-Hydrox | 2e-49 | ||
| 1uyi_A | 236 | Human Hsp90-Alpha With 8-(2,5-Dimethoxy-Benzyl)-2-F | 2e-49 | ||
| 3b24_A | 229 | Hsp90 Alpha N-Terminal Domain In Complex With An Am | 2e-49 | ||
| 3r4m_A | 228 | Optimization Of Potent, Selective, And Orally Bioav | 3e-49 | ||
| 3bm9_A | 226 | Discovery Of Benzisoxazoles As Potent Inhibitors Of | 3e-49 | ||
| 1uy6_A | 236 | Human Hsp90-Alpha With 9-Butyl-8-(3,4,5-Trimethoxy- | 3e-49 | ||
| 3d0b_A | 232 | Crystal Structure Of Benzamide Tetrahydro-4h-Carbaz | 3e-49 | ||
| 3ft5_A | 249 | Structure Of Hsp90 Bound With A Novel Fragment Leng | 3e-49 | ||
| 3qdd_A | 237 | Hsp90a N-Terminal Domain In Complex With Biib021 Le | 3e-49 | ||
| 3inw_A | 228 | Hsp90 N-Terminal Domain With Pochoxime A Length = 2 | 3e-49 | ||
| 2fwy_A | 256 | Structure Of Human Hsp90-Alpha Bound To The Potent | 3e-49 | ||
| 4eeh_A | 229 | Hsp90 Alpha N-Terminal Domain In Complex With An In | 3e-49 | ||
| 2bsm_A | 235 | Novel, Potent Small Molecule Inhibitors Of The Mole | 3e-49 | ||
| 4awo_A | 230 | Complex Of Hsp90 Atpase Domain With Tropane Derived | 3e-49 | ||
| 3k97_A | 251 | Hsp90 N-Terminal Domain In Complex With 4-Chloro-6- | 3e-49 | ||
| 4gqt_A | 227 | N-Terminal Domain Of C. Elegans Hsp90 Length = 227 | 5e-49 | ||
| 2ccs_A | 236 | Human Hsp90 With 4-Chloro-6-(4-Piperazin-1-Yl-1h-Py | 5e-49 | ||
| 1yc1_A | 264 | Crystal Structures Of Human Hsp90alpha Complexed Wi | 5e-49 | ||
| 2xjj_A | 249 | Structre Of Hsp90 With Small Molecule Inhibitor Bou | 5e-49 | ||
| 1byq_A | 228 | Hsp90 N-Terminal Domain Bound To Adp-Mg Length = 22 | 5e-49 | ||
| 2xjg_A | 249 | Structure Of Hsp90 With Small Molecule Inhibitor Bo | 5e-49 | ||
| 2yi0_A | 229 | Structural Characterization Of 5-Aryl-4-(5-Substitu | 7e-49 | ||
| 2yee_A | 252 | Hsp90 Inhibitors And Drugs From Fragment And Virtua | 7e-49 | ||
| 3k98_A | 232 | Hsp90 N-Terminal Domain In Complex With (1r)-2-(5-C | 3e-48 | ||
| 3eko_A | 226 | Dihydroxylphenyl Amides As Inhibitors Of The Hsp90 | 3e-48 | ||
| 3tuh_A | 209 | Crystal Structure Of The N-Terminal Domain Of An Hs | 3e-48 | ||
| 2xdu_A | 236 | Structre Of Hsp90 With Small Molecule Inhibitor Bou | 3e-48 | ||
| 3hhu_A | 224 | Human Heat-Shock Protein 90 (Hsp90) In Complex With | 3e-48 | ||
| 3k60_B | 223 | Crystal Structure Of N-Terminal Domain Of Plasmodiu | 4e-48 | ||
| 1us7_A | 214 | Complex Of Hsp90 And P50 Length = 214 | 5e-48 | ||
| 2cgf_A | 225 | A Radicicol Analogue Bound To The Atp Binding Site | 6e-48 | ||
| 2bre_A | 219 | Structure Of A Hsp90 Inhibitor Bound To The N-Termi | 6e-48 | ||
| 1bgq_A | 225 | Radicicol Bound To The Atp Binding Site Of The N-Te | 6e-48 | ||
| 1a4h_A | 230 | Structure Of The N-Terminal Domain Of The Yeast Hsp | 6e-48 | ||
| 2xx2_A | 214 | Macrolactone Inhibitor Bound To Hsp90 N-Term Length | 6e-48 | ||
| 1am1_A | 213 | Atp Binding Site In The Hsp90 Molecular Chaperone L | 6e-48 | ||
| 1ah8_A | 220 | Structure Of The Orthorhombic Form Of The N-Termina | 7e-48 | ||
| 2qfo_A | 207 | Hsp90 Complexed With A143571 And A516383 Length = 2 | 8e-48 | ||
| 1zw9_A | 240 | Yeast Hsp82 In Complex With The Novel Hsp90 Inhibit | 8e-48 | ||
| 2yjw_A | 209 | Tricyclic Series Of Hsp90 Inhibitors Length = 209 | 8e-48 | ||
| 2wep_A | 220 | Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Adp | 9e-48 | ||
| 2jjc_A | 218 | Hsp90 Alpha Atpase Domain With Bound Small Molecule | 9e-48 | ||
| 1osf_A | 215 | Human Hsp90 In Complex With 17-desmethoxy-17-n,n- D | 1e-47 | ||
| 2qf6_A | 207 | Hsp90 Complexed With A56322 Length = 207 | 1e-47 | ||
| 2yge_A | 220 | E88g-n92l Mutant Of N-term Hsp90 Complexed With Gel | 2e-47 | ||
| 2k5b_A | 210 | Human Cdc37-Hsp90 Docking Model Based On Nmr Length | 2e-47 | ||
| 3c0e_A | 240 | Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 9 | 3e-47 | ||
| 2yga_A | 220 | E88g-n92l Mutant Of N-term Hsp90 Complexed With Gel | 3e-47 | ||
| 2ygf_A | 220 | L89v, L93i And V136m Mutant Of N-term Hsp90 Complex | 7e-47 | ||
| 3opd_A | 231 | Crystal Structure Of The N-Terminal Domain Of An Hs | 9e-46 | ||
| 3o6o_A | 214 | Crystal Structure Of The N-Terminal Domain Of An Hs | 1e-45 | ||
| 2ior_A | 235 | Crystal Structure Of The N-Terminal Domain Of Htpg, | 1e-39 | ||
| 2akp_A | 186 | Hsp90 Delta24-n210 Mutant Length = 186 | 2e-39 | ||
| 3ied_A | 272 | Crystal Structure Of N-Terminal Domain Of Plasmodiu | 5e-35 |
| >pdb|2O1U|A Chain A, Structure Of Full Length Grp94 With Amp-Pnp Bound Length = 666 | Back alignment and structure |
|
| >pdb|2O1W|A Chain A, Structure Of N-Terminal Plus Middle Domains (N+m) Of Grp94 Length = 506 | Back alignment and structure |
| >pdb|1Y4S|A Chain A, Conformation Rearrangement Of Heat Shock Protein 90 Upon Adp Binding Length = 559 | Back alignment and structure |
| >pdb|2IOP|A Chain A, Crystal Structure Of Full-Length Htpg, The Escherichia Coli Hsp90, Bound To Adp Length = 624 | Back alignment and structure |
| >pdb|2O1T|A Chain A, Structure Of Middle Plus C-Terminal Domains (M+c) Of Grp94 Length = 450 | Back alignment and structure |
| >pdb|3HJC|A Chain A, Crystal Structure Of The Carboxy-Terminal Domain Of Hsp90 From Leishmania Major, Lmjf33.0312 Length = 444 | Back alignment and structure |
| >pdb|3Q6M|A Chain A, Crystal Structure Of Human Mc-Hsp90 In C2221 Space Group Length = 448 | Back alignment and structure |
| >pdb|2CG9|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone Complex Length = 677 | Back alignment and structure |
| >pdb|3PRY|A Chain A, Crystal Structure Of The Middle Domain Of Human Hsp90-Beta Refined At 2.3 A Resolution Length = 268 | Back alignment and structure |
| >pdb|2CGE|A Chain A, Crystal Structure Of An Hsp90-Sba1 Closed Chaperone Complex Length = 405 | Back alignment and structure |
| >pdb|1USU|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90 Length = 260 | Back alignment and structure |
| >pdb|1HK7|A Chain A, Middle Domain Of Hsp90 Length = 288 | Back alignment and structure |
| >pdb|1USV|A Chain A, The Structure Of The Complex Between Aha1 And Hsp90 Length = 260 | Back alignment and structure |
| >pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock Protein Pf14_0417 Length = 263 | Back alignment and structure |
| >pdb|3PEH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From Plasmodium Falciparum, Pfl1070c In The Presence Of A Thienopyrimidine Derivative Length = 281 | Back alignment and structure |
| >pdb|3H80|A Chain A, Crystal Structure Of The Amino-Terminal Domain Of Hsp90 From Leishmania Major, Lmjf33.0312:m1-K213 Length = 231 | Back alignment and structure |
| >pdb|2JKI|A Chain A, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 223 | Back alignment and structure |
| >pdb|1U2O|A Chain A, Crystal Structure Of The N-Domain Of Grp94 Lacking The Charged Domain In Complex With Neca Length = 236 | Back alignment and structure |
| >pdb|1U0Y|A Chain A, N-Domain Of Grp94, With The Charged Domain, In Complex With The Novel Ligand N-Propyl Carboxyamido Adenosine Length = 273 | Back alignment and structure |
| >pdb|1QY5|A Chain A, Crystal Structure Of The N-Domain Of The Er Hsp90 Chaperone Grp94 In Complex With The Specific Ligand Neca Length = 269 | Back alignment and structure |
| >pdb|2XCM|A Chain A, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 214 | Back alignment and structure |
| >pdb|2ESA|A Chain A, Grp94 N-Terminal Domain Bound To Geldanamycin: Effects Of Mutants 168- 169 Ks-Aa Length = 236 | Back alignment and structure |
| >pdb|2GQ0|A Chain A, Crystal Structure Of The Middle Domain Of Htpg, The E. Coli Hsp90 Length = 303 | Back alignment and structure |
| >pdb|1UYM|A Chain A, Human Hsp90-Beta With Pu3 (9-Butyl-8(3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine) Length = 220 | Back alignment and structure |
| >pdb|2YE7|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening Length = 252 | Back alignment and structure |
| >pdb|3NMQ|A Chain A, Hsp90b N-Terminal Domain In Complex With Ec44, A Pyrrolo-Pyrimidine Methoxypyridine Inhibitor Length = 239 | Back alignment and structure |
| >pdb|2YE2|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening Length = 252 | Back alignment and structure |
| >pdb|4EGH|A Chain A, Hsp90-Alpha Atpase Domain In Complex With (4-Hydroxyphenyl)morpholin- 4-Yl Methanone Length = 232 | Back alignment and structure |
| >pdb|1UYI|A Chain A, Human Hsp90-Alpha With 8-(2,5-Dimethoxy-Benzyl)-2-Fluoro-9- Pent-9h-Purin-6-Ylamine Length = 236 | Back alignment and structure |
| >pdb|3B24|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Aminotriazine Fragment Molecule Length = 229 | Back alignment and structure |
| >pdb|3R4M|A Chain A, Optimization Of Potent, Selective, And Orally Bioavailable Pyrrolodinopyrimidine-Containing Inhibitors Of Heat Shock Protein 90. Identification Of Development Candidate 2-Amino-4-{4-Chloro-2-[2-(4- Fluoro-1h-Pyrazol-1-Yl)ethoxy]-6-Methylphenyl}-N-(2,2- Difluoropropyl)-5,7-Dihydro-6h-Pyrrolo[3, 4-D]pyrimidine-6-Carboxamide Length = 228 | Back alignment and structure |
| >pdb|3BM9|A Chain A, Discovery Of Benzisoxazoles As Potent Inhibitors Of Chaperone Hsp90 Length = 226 | Back alignment and structure |
| >pdb|1UY6|A Chain A, Human Hsp90-Alpha With 9-Butyl-8-(3,4,5-Trimethoxy-Benzyl)-9h-Purin-6-Ylamine Length = 236 | Back alignment and structure |
| >pdb|3D0B|A Chain A, Crystal Structure Of Benzamide Tetrahydro-4h-Carbazol-4-One Bound To Hsp90 Length = 232 | Back alignment and structure |
| >pdb|3FT5|A Chain A, Structure Of Hsp90 Bound With A Novel Fragment Length = 249 | Back alignment and structure |
| >pdb|3QDD|A Chain A, Hsp90a N-Terminal Domain In Complex With Biib021 Length = 237 | Back alignment and structure |
| >pdb|3INW|A Chain A, Hsp90 N-Terminal Domain With Pochoxime A Length = 228 | Back alignment and structure |
| >pdb|2FWY|A Chain A, Structure Of Human Hsp90-Alpha Bound To The Potent Water Soluble Inhibitor Pu-H64 Length = 256 | Back alignment and structure |
| >pdb|4EEH|A Chain A, Hsp90 Alpha N-Terminal Domain In Complex With An Inhibitor 3-(4- Hydroxy-Phenyl)-1h-Indazol-6-Ol Length = 229 | Back alignment and structure |
| >pdb|2BSM|A Chain A, Novel, Potent Small Molecule Inhibitors Of The Molecular Chaperone Hsp90 Discovered Through Structure-Based Design Length = 235 | Back alignment and structure |
| >pdb|4AWO|A Chain A, Complex Of Hsp90 Atpase Domain With Tropane Derived Inhibitors Length = 230 | Back alignment and structure |
| >pdb|3K97|A Chain A, Hsp90 N-Terminal Domain In Complex With 4-Chloro-6-{[(2r)-2- (2-Methylphenyl)pyrrolidin-1-Yl]carbonyl}benzene-1, 3-Diol Length = 251 | Back alignment and structure |
| >pdb|4GQT|A Chain A, N-Terminal Domain Of C. Elegans Hsp90 Length = 227 | Back alignment and structure |
| >pdb|2CCS|A Chain A, Human Hsp90 With 4-Chloro-6-(4-Piperazin-1-Yl-1h-Pyrazol-3- Yl)-Benzene-1,2-Diol Length = 236 | Back alignment and structure |
| >pdb|1YC1|A Chain A, Crystal Structures Of Human Hsp90alpha Complexed With Dihydroxyphenylpyrazoles Length = 264 | Back alignment and structure |
| >pdb|2XJJ|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound Length = 249 | Back alignment and structure |
| >pdb|1BYQ|A Chain A, Hsp90 N-Terminal Domain Bound To Adp-Mg Length = 228 | Back alignment and structure |
| >pdb|2XJG|A Chain A, Structure Of Hsp90 With Small Molecule Inhibitor Bound Length = 249 | Back alignment and structure |
| >pdb|2YI0|A Chain A, Structural Characterization Of 5-Aryl-4-(5-Substituted-2-4- Dihydroxyphenyl)-1,2,3-Thiadiazole Hsp90 Inhibitors. Length = 229 | Back alignment and structure |
| >pdb|2YEE|A Chain A, Hsp90 Inhibitors And Drugs From Fragment And Virtual Screening Length = 252 | Back alignment and structure |
| >pdb|3K98|A Chain A, Hsp90 N-Terminal Domain In Complex With (1r)-2-(5-Chloro-2, 4-Dihydroxybenzoyl)-N-Ethylisoindoline-1-Carboxamide Length = 232 | Back alignment and structure |
| >pdb|3EKO|A Chain A, Dihydroxylphenyl Amides As Inhibitors Of The Hsp90 Molecular Chaperone Length = 226 | Back alignment and structure |
| >pdb|3TUH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 In The Presence Of An The Inhibitor Ganetespib Length = 209 | Back alignment and structure |
| >pdb|2XDU|A Chain A, Structre Of Hsp90 With Small Molecule Inhibitor Bound Length = 236 | Back alignment and structure |
| >pdb|3HHU|A Chain A, Human Heat-Shock Protein 90 (Hsp90) In Complex With {4-[3- (2,4-Dihydroxy-5-Isopropyl-Phenyl)-5-Thioxo- 1,5-Dihydro- [1,2,4]triazol-4-Yl]-Benzyl}-Carbamic Acid Ethyl Ester {zk 2819} Length = 224 | Back alignment and structure |
| >pdb|3K60|B Chain B, Crystal Structure Of N-Terminal Domain Of Plasmodium Falciparum Hsp90 (Pf07_0029) Bound To Adp Length = 223 | Back alignment and structure |
| >pdb|1US7|A Chain A, Complex Of Hsp90 And P50 Length = 214 | Back alignment and structure |
| >pdb|2CGF|A Chain A, A Radicicol Analogue Bound To The Atp Binding Site Of The N- Terminal Domain Of The Yeast Hsp90 Chaperone Length = 225 | Back alignment and structure |
| >pdb|2BRE|A Chain A, Structure Of A Hsp90 Inhibitor Bound To The N-Terminus Of Yeast Hsp90. Length = 219 | Back alignment and structure |
| >pdb|1BGQ|A Chain A, Radicicol Bound To The Atp Binding Site Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone Length = 225 | Back alignment and structure |
| >pdb|1A4H|A Chain A, Structure Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone In Complex With Geldanamycin Length = 230 | Back alignment and structure |
| >pdb|2XX2|A Chain A, Macrolactone Inhibitor Bound To Hsp90 N-Term Length = 214 | Back alignment and structure |
| >pdb|1AM1|A Chain A, Atp Binding Site In The Hsp90 Molecular Chaperone Length = 213 | Back alignment and structure |
| >pdb|1AH8|A Chain A, Structure Of The Orthorhombic Form Of The N-Terminal Domain Of The Yeast Hsp90 Chaperone Length = 220 | Back alignment and structure |
| >pdb|2QFO|A Chain A, Hsp90 Complexed With A143571 And A516383 Length = 207 | Back alignment and structure |
| >pdb|1ZW9|A Chain A, Yeast Hsp82 In Complex With The Novel Hsp90 Inhibitor 8-(6-Bromo- Benzo[1, 3]dioxol-5-Ylsulfanyl)-9-(3-Isopropylamino-Propyl)- Adenine Length = 240 | Back alignment and structure |
| >pdb|2YJW|A Chain A, Tricyclic Series Of Hsp90 Inhibitors Length = 209 | Back alignment and structure |
| >pdb|2WEP|A Chain A, Yeast Hsp90 N-Terminal Domain Li-Iv Mutant With Adp Length = 220 | Back alignment and structure |
| >pdb|2JJC|A Chain A, Hsp90 Alpha Atpase Domain With Bound Small Molecule Fragment Length = 218 | Back alignment and structure |
| >pdb|1OSF|A Chain A, Human Hsp90 In Complex With 17-desmethoxy-17-n,n- Dimethylaminoethylamino-geldanamycin Length = 215 | Back alignment and structure |
| >pdb|2QF6|A Chain A, Hsp90 Complexed With A56322 Length = 207 | Back alignment and structure |
| >pdb|2YGE|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With Geldanamycin Length = 220 | Back alignment and structure |
| >pdb|2K5B|A Chain A, Human Cdc37-Hsp90 Docking Model Based On Nmr Length = 210 | Back alignment and structure |
| >pdb|3C0E|A Chain A, Yeast Hsp82 N-Terminal Domain: Effects Of Mutants 98-99 Ks- Aa Length = 240 | Back alignment and structure |
| >pdb|2YGA|A Chain A, E88g-n92l Mutant Of N-term Hsp90 Complexed With Geldanamycin Length = 220 | Back alignment and structure |
| >pdb|2YGF|A Chain A, L89v, L93i And V136m Mutant Of N-term Hsp90 Complexed With Geldanamycin Length = 220 | Back alignment and structure |
| >pdb|3OPD|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of A Benzamide Derivative Length = 231 | Back alignment and structure |
| >pdb|3O6O|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90 From Trypanosoma Brucei, Tb10.26.1080 In The Presence Of An The Inhibitor Biib021 Length = 214 | Back alignment and structure |
| >pdb|2IOR|A Chain A, Crystal Structure Of The N-Terminal Domain Of Htpg, The Escherichia Coli Hsp90, Bound To Adp Length = 235 | Back alignment and structure |
| >pdb|2AKP|A Chain A, Hsp90 Delta24-n210 Mutant Length = 186 | Back alignment and structure |
| >pdb|3IED|A Chain A, Crystal Structure Of N-Terminal Domain Of Plasmodium Falciparum Hsp90 (Pf14_0417) In Complex With Amppn Length = 272 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Length = 666 | Back alignment and structure |
|---|
Score = 677 bits (1749), Expect = 0.0
Identities = 239/506 (47%), Positives = 328/506 (64%), Gaps = 37/506 (7%)
Query: 65 RCDAAVADKEAPDTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRF 124
+ EKF +QAEV+R+M LI++SLY +KE+FLREL+SNASDALDK+R
Sbjct: 7 HHHHSSGLVPRGSHMSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRL 66
Query: 125 LSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGIGMTKEELVDCLGTIAQSGTSKFLKA 184
+S+T+ + L +L ++IK D E + +TDTG+GMT+EELV LGTIA+SGTS+FL
Sbjct: 67 ISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNK 126
Query: 185 LKEN-NDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSYVIRE 243
+ E D + + LIGQFGVGFYSAFLVA KV+V++K +D Q++WE++++ VI +
Sbjct: 127 MTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHN-NDTQHIWESDSN-EFSVIAD 184
Query: 244 ETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVE 303
L RGT ITL LKE+ ++ E I+ LVK YSQF++FPIY W K+
Sbjct: 185 PRGNT--LGRGTTITLVLKEEAS-DYLELDTIKNLVKKYSQFINFPIYVWSSKTG----- 236
Query: 304 EEEKPEEGEEQPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTF 363
+ WDWEL N+ KPIW R KE+E DEY FYK
Sbjct: 237 ---------------------GGGKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFS 275
Query: 364 NEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTK-NIRLYVKRVFISDDFD 422
E DP+AY HFT EGEV F+S+L++P P + K I+LYV+RVFI+DDF
Sbjct: 276 KESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFH 335
Query: 423 GELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKE 482
++ P+YL+FVKGVVDSDDLPLNVSRE LQ+ ++++++RK+LVRKT DMI+ I+ +++
Sbjct: 336 -DMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIA---DEK 391
Query: 483 DYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIY 542
FW+ FG +KLG +ED N RLA LLRF +S ++ SLD+YVE M EKQ+ IY
Sbjct: 392 YNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPSDITSLDQYVERMKEKQDKIY 451
Query: 543 YLATDSLKSAKSAPFLEKLVQKDIEV 568
++A S K A+S+PF+E+L++K EV
Sbjct: 452 FMAGSSRKEAESSPFVERLLKKGYEV 477
|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Length = 559 | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Length = 624 | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Length = 677 | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Length = 281 | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Length = 269 | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Length = 236 | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Length = 220 | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Length = 264 | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Length = 228 | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Length = 256 | Back alignment and structure |
|---|
| >3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major} Length = 444 | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Length = 235 | Back alignment and structure |
|---|
| >3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} Length = 268 | Back alignment and structure |
|---|
| >1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A Length = 260 | Back alignment and structure |
|---|
| >1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum} Length = 263 | Back alignment and structure |
|---|
| >2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae} Length = 405 | Back alignment and structure |
|---|
| >3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A Length = 448 | Back alignment and structure |
|---|
| >1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8 Length = 288 | Back alignment and structure |
|---|
| >2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli} Length = 303 | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Length = 272 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 100.0 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 100.0 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 100.0 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 100.0 | |
| 1usu_A | 260 | Heat shock protein HSP82; chaperone/complex, chape | 100.0 | |
| 3pry_A | 268 | Heat shock protein HSP 90-beta; structural genomic | 100.0 | |
| 1hk7_A | 288 | Heat shock protein HSP82; ATPase, chaperone; 2.5A | 100.0 | |
| 1y6z_A | 263 | Heat shock protein, putative; chaperone, structura | 100.0 | |
| 2gq0_A | 303 | Chaperone protein HTPG; molecular chaperone, HSP90 | 100.0 | |
| 3hjc_A | 444 | Heat shock protein 83-1; sleeping sickness, struct | 100.0 | |
| 3q6m_A | 448 | Heat shock protein HSP 90-alpha; three domains, tr | 100.0 | |
| 2cge_A | 405 | ATP-dependent molecular chaperone HSP82; chaperone | 100.0 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 100.0 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 100.0 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 100.0 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 100.0 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 100.0 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 100.0 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 100.0 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 100.0 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 100.0 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 100.0 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.88 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.82 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.79 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.79 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 99.33 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 99.26 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 99.23 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 99.23 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 99.15 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.01 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 98.97 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 98.84 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 98.84 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 98.81 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 98.78 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 98.49 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 98.38 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 98.16 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.43 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.35 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.34 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.26 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.23 | |
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 97.22 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.19 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.18 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.12 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.1 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.07 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 97.07 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.02 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 97.01 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 96.98 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 96.92 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 96.9 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 96.88 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 96.87 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 96.55 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 96.09 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 96.06 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 96.05 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 95.97 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 94.53 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 89.39 |
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-132 Score=1113.90 Aligned_cols=500 Identities=46% Similarity=0.792 Sum_probs=439.0
Q ss_pred CceeeehhhHHHHHHHHHHccCCCchhhHHhhhhcHHhHHHHHhhhhccCCCCCCCCCCceEEEEeCCCCcEEEEEeCCC
Q 007698 80 GEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPENGTITITDTGI 159 (592)
Q Consensus 80 ~e~~~Fq~e~~~Ll~lL~~~LYs~~~vfLRELIqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~L~I~DNGi 159 (592)
.|++.||+|+++||++|+++||||+++|||||||||+||++|+|++++++|+.+.+.+++.|+|.+++++++|+|+|||+
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d~~~~~I~I~DnGi 82 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGI 82 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEEGGGTEEEEEECSC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEeCCCCEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999998888888999999988889999999999
Q ss_pred CCCHHHHHHHHhhhhcccchhHHHHhhhcccCCCCCcccccccchhhhhhccccEEEEEEecCCCCceEEEEEecCCCce
Q 007698 160 GMTKEELVDCLGTIAQSGTSKFLKALKENNDLGADNGLIGQFGVGFYSAFLVAQKVVVSTKSPRSDKQYVWEAEADSSSY 239 (592)
Q Consensus 160 GMt~eeL~~~L~tIa~Sgt~~f~~~l~~~~~~~~~~~~IGqFGIGf~S~F~VadkV~V~Sr~~~~~~~~~W~s~~~~~~y 239 (592)
|||++||.++|++||+||++.|+++++. +.+...||||||||||+||||++|+|+||+++ +.++.|++.+ ++.|
T Consensus 83 GMt~edl~~~l~tIA~Sgt~~f~~kl~~----~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~-~~~~~W~s~g-~~~~ 156 (677)
T 2cg9_A 83 GMTKAELINNLGTIAKSGTKAFMEALSA----GADVSMIGQFGVGFYSLFLVADRVQVISKSND-DEQYIWESNA-GGSF 156 (677)
T ss_dssp CCCHHHHHGGGSSSSSCTTHHHHSCCCS----SCCCCCCCCTTCTTGGGGGTEEEEEEEEECTT-SCEEEEEECS-SSEE
T ss_pred CCCHHHHHHHHHhHhccccHHHHHhhhc----ccchhhcCCCCchhHHHhhcCcEEEEEEccCC-CceEEEEEcC-CceE
Confidence 9999999999999999999999887763 34668999999999999999999999999986 5699999985 4799
Q ss_pred EEeecCCCCccCCCCcEEEEEeecCCccCCCchhHHHHHHHHhhccCccceeeccccccccccccccC------------
Q 007698 240 VIREETDPEKLLKRGTQITLYLKEDDKYEFSEPTRIQGLVKNYSQFVSFPIYTWQEKSRTIEVEEEEK------------ 307 (592)
Q Consensus 240 ~I~~~~~~~~~~~~GT~I~L~Lk~~~~~e~le~~~i~~lvk~ys~fl~~PI~~~~~~~~~~~~~~~~~------------ 307 (592)
+|.+... ....++||+|+|+|++++. +|++.++|+++|++||+|++|||+++.+++.+++++++++
T Consensus 157 ti~~~~~-~~~~~~GT~I~L~Lk~d~~-e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~ 234 (677)
T 2cg9_A 157 TVTLDEV-NERIGRGTILRLFLKDDQL-EYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEK 234 (677)
T ss_dssp EEEECCS-SCCCSSEEEEEEEECTTGG-GGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------
T ss_pred EEeecCC-CCCCCCCeEEEEEEcchhh-ccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccc
Confidence 9988521 1235799999999999999 9999999999999999999999999866654333221110
Q ss_pred CCCCCC-------CcccccccccccccccccceeeeecCCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccc
Q 007698 308 PEEGEE-------QPEGEKKTKKTTKTEKYWDWELANETKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGE 380 (592)
Q Consensus 308 ~~~~~~-------~~~~~~~~~~k~~~~~~~~~e~~N~~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~ 380 (592)
+++.++ ++++++++++|++++++++|+.+|+.+|||+|+|++|+++||.+|||+++++|++||+|+||++||+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~~~pl~~~H~~veg~ 314 (677)
T 2cg9_A 235 KDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQ 314 (677)
T ss_dssp ---------------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCCSCCSEEEEEEECSS
T ss_pred ccccccccccccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCCCCchheEEeccccc
Confidence 000000 0000123456667777889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeeCCCCCCccccccccccCeEEEeeceeeccCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHH
Q 007698 381 VEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIM 460 (592)
Q Consensus 381 ~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~i 460 (592)
++|+||||||+.+||++++. ....++|+||||||||+|+|+ +|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 315 ~~~~~lLyiP~~ap~d~~~~-~~~~~~ikLYv~rVfI~d~~~-~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I 392 (677)
T 2cg9_A 315 LEFRAILFIPKRAPFDLFES-KKKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVI 392 (677)
T ss_dssp SCEEEEEEECSSCCC----------CCSEEEETTEEEEECST-TTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHH
T ss_pred ceEEEEEEEcCCCchhhhhh-hhccCCeEEEEeeeEeecChh-hhchHHHHHheeecccCCCCcccCHHHhccCHHHHHH
Confidence 99999999999999988742 234689999999999999995 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheeeeccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCc
Q 007698 461 RKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNA 540 (592)
Q Consensus 461 rk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~ 540 (592)
|+.|++||+++|.+||+ ++++|++||++||++||+|+++|+.||++|++||||+||+++++++||+||++|||++|+.
T Consensus 393 ~~~l~kkvl~~l~~la~--~~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~~~sL~eYv~rmke~Q~~ 470 (677)
T 2cg9_A 393 RKNIVKKLIEAFNEIAE--DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKN 470 (677)
T ss_dssp HHHHHHHHHHHHHHHHS--CSHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTSCBCSTTHHHHSCTTCCE
T ss_pred HHHHHHHHHHHHHHHHh--CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCceeeHHHHHHhccccCce
Confidence 99999999999999994 6799999999999999999999999999999999999998877899999999999999999
Q ss_pred EEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchhhee-cccccCCccC
Q 007698 541 IYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNFNFA-VGRHHGNDFC 591 (592)
Q Consensus 541 IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~~~~-~~~~~~~~~~ 591 (592)
|||++|+|++++++|||+|.+++||+|||||++|||+||++ |++|+||+|.
T Consensus 471 IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~ 522 (677)
T 2cg9_A 471 IYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLV 522 (677)
T ss_dssp EEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEE
T ss_pred EEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999 9999999983
|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A | Back alignment and structure |
|---|
| >3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8 | Back alignment and structure |
|---|
| >1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8 | Back alignment and structure |
|---|
| >1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli} | Back alignment and structure |
|---|
| >3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major} | Back alignment and structure |
|---|
| >3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A | Back alignment and structure |
|---|
| >2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 592 | ||||
| d1usua_ | 256 | d.14.1.8 (A:) Heat shock protein hsp82 {Baker's ye | 1e-72 | |
| d2gqpa1 | 227 | d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) | 2e-63 | |
| d1uyla_ | 208 | d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: | 2e-62 | |
| d2iwxa1 | 213 | d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharo | 2e-59 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 7e-05 |
| >d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Hsp90 middle domain domain: Heat shock protein hsp82 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 231 bits (590), Expect = 1e-72
Identities = 108/230 (46%), Positives = 162/230 (70%), Gaps = 4/230 (1%)
Query: 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNE 398
TKP+W RNP +I ++EY+ FYK N++ DPL HF+ EG++EFR++L+IP P +
Sbjct: 2 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLF 61
Query: 399 EIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVR 458
E K NI+LYV+RVFI+D+ + +L P +LSFVKGVVDS+DLPLN+SRE+LQ+++I++
Sbjct: 62 E-SKKKKNNIKLYVRRVFITDEAE-DLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMK 119
Query: 459 IMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLGCVEDSGNHKRLAPLLRFYTS 518
++RK +V+K + +I++ E ++KF+ F + +KLG ED+ N LA LLR+ ++
Sbjct: 120 VIRKNIVKKLIEAFNEIAEDS--EQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNST 177
Query: 519 KSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEV 568
KS +EL SL +YV M E Q IYY+ +SLKS + +PFL+ L K+ EV
Sbjct: 178 KSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEV 227
|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Length = 227 | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Length = 208 | Back information, alignment and structure |
|---|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| d1usua_ | 256 | Heat shock protein hsp82 {Baker's yeast (Saccharom | 100.0 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 100.0 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 100.0 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.7 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.68 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.47 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 98.25 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 98.01 | |
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 97.96 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.78 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.71 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 97.61 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 97.52 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 97.51 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.38 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.36 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 97.22 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 96.94 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.2 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 95.25 |
| >d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ribosomal protein S5 domain 2-like superfamily: Ribosomal protein S5 domain 2-like family: Hsp90 middle domain domain: Heat shock protein hsp82 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6e-81 Score=628.25 Aligned_cols=248 Identities=45% Similarity=0.825 Sum_probs=231.1
Q ss_pred CCCccccCCCCCChHHHHHHHHHhhcCCCCCccccccccccceEEEEEEEeeCCCCCCccccccccccCeEEEeeceeec
Q 007698 339 TKPIWMRNPKEIEKDEYHEFYKKTFNEFLDPLAYTHFTTEGEVEFRSVLYIPGMGPLNNEEIMNPKTKNIRLYVKRVFIS 418 (592)
Q Consensus 339 ~~~iW~r~~~~i~~eey~~Fyk~~~~~~~dpL~~~h~~~eg~~~~~~llyiP~~~p~~~~~~~~~~~~~i~LYv~rvfI~ 418 (592)
++|||+|++++||+|||.+||++++++|++||+|+|+++||+++|+||||||+.+|+++++. +...++|+||||||||+
T Consensus 2 tkpiW~r~~~eit~eeY~~FYk~l~~~~~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~-~~~~~~ikLY~~rVfI~ 80 (256)
T d1usua_ 2 TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES-KKKKNNIKLYVRRVFIT 80 (256)
T ss_dssp CCCGGGSCGGGCCHHHHHHHHHHHHCCSSCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC-----CCEEEEETTEEEE
T ss_pred CCCCccCCchhCCHHHHHHHHHhhcCCccCCceeEEeeeeeeEEEEEEEEecccCcchhhhh-hhhcCCeEEEEEeeeec
Confidence 68999999999999999999999999999999999999999999999999999999987642 23567999999999999
Q ss_pred cCCCCCcccccccccceeccCCCCCCccchHHhhhcHHHHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHhhhheee
Q 007698 419 DDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDISQSENKEDYKKFWENFGRFLKLG 498 (592)
Q Consensus 419 d~~~~~llP~~l~Fv~GVVDS~dLplNvSRE~lq~~~~l~~irk~l~~k~~~~l~~la~~e~~e~y~~f~~~f~~~lK~G 498 (592)
|+| ++|||+||+||||||||+|||||||||+||+|+++++|++.|++||+++|++++ +|+++|.+||++||.+||+|
T Consensus 81 d~~-~~llP~~L~FvkGVVDS~DlpLNVSRE~LQ~~~~l~kI~~~i~kkv~~~L~~~~--~d~eky~~fw~~fg~~lK~G 157 (256)
T d1usua_ 81 DEA-EDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIA--EDSEQFEKFYSAFSKNIKLG 157 (256)
T ss_dssp SCC-TTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred cch-hhHHHHHHHHhhhccccccCCcccchhhhcccHHHHHHHHHHHHHHHHHHHHhh--hCHHHHHHHHHHHhHHHhhh
Confidence 999 499999999999999999999999999999999999999999999999999986 47899999999999999999
Q ss_pred eccccccHHhhcccccceeccCCCceeCHHHHHHhcCCCCCcEEEEecCCHHHHhcChHHHHHHhCCCeEEEeccccchh
Q 007698 499 CVEDSGNHKRLAPLLRFYTSKSEEELISLDEYVENMGEKQNAIYYLATDSLKSAKSAPFLEKLVQKDIEVRTSFVELYNF 578 (592)
Q Consensus 499 ~~eD~~~~~~l~~LLrf~ts~~~~~~~SL~eYv~rmk~~Qk~IYY~~~~s~~~~~~sp~lE~~~~kg~EVL~~~~~~d~~ 578 (592)
+++|.+|++++++||+|+||.++++++||+||++||+++|+.|||++|++++++++|||+|++++||+|||||++|||||
T Consensus 158 ~~~D~~~~e~l~~ll~f~ss~s~~e~~SL~eYvermke~Qk~IyYi~~~s~~~~~~sP~lE~~k~kg~EVL~l~dpiDe~ 237 (256)
T d1usua_ 158 VHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKNFEVLFLTDPIDEY 237 (256)
T ss_dssp HHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHTCTTHHHHHHTTCCEEEECSHHHHH
T ss_pred ccccHHHHHHHHHhhhhhccCCCcceeeHHHHHhhccccccceEEEecCCHHHHHcCHHHHHHHHCCCEEEEecCchHHH
Confidence 99999999999999999999887899999999999999999999999999999999999999999999999999999999
Q ss_pred hee-cccccCCcc
Q 007698 579 NFA-VGRHHGNDF 590 (592)
Q Consensus 579 ~~~-~~~~~~~~~ 590 (592)
+++ |++|+||+|
T Consensus 238 ~i~~l~e~~~kkf 250 (256)
T d1usua_ 238 AFTQLKEFEGKTL 250 (256)
T ss_dssp HHHHHCEETTEEE
T ss_pred HHHHHHHhCCCce
Confidence 999 999999987
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| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
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| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
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| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
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| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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