Citrus Sinensis ID: 007702

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
Protein Sequence
MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccEEcccccHHcccccccccccEEEEEccccccEEEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEEccccHHHHHHccccccccccccEEEEEEccccccHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHEHHHHHHHHHHHHHHcHHHEHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHccccHHHHHHHHHHHHHHHHHHccccEEEEEEcEccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEEEEEEcccccccccccccEEEEEEEccccccccccEEEEcccccccccccEEEEEEEEcccccccHHHHccccccccccccHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHcccEHHHHcHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATaittcsgpisdwlgrrpmlILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPlyisetapseirgrlntlpqftgsggMFLAYCMVFGMsllaspswrLMLGVLSIPALLYFAFAVfflpesprwlvskGKMLEAKQVLQRLRGREDVSGEMALLVEGlgiggetsieeyiigpgdeladgeeptdekdkirlygpeeglswvakpvtgqsSLALVSRqgslanqsvplmdpLVTLFGSvheklpesgsmrstlfptfgsmfstaehhvkhdhwdeeslqregedhasdiagadsddnlhsplisrqttsmekdmaappshgsilsmrrhsslmqgsgeavgstgigggWQLAWKWTeregedgkkeggfKRIYlhqegvpgsrrgslvsvpgydvpeegEYIQAAALVSqpalyskelmdqhpvgpamvhpsetaskgpSWAALLEAGVKRALLVGVGIQILQQFsgingvlyytpqilEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Flexible Loop (DISEMBL)
MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISetapseirgrlnTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQrlrgredvsgEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDiagadsddnlhSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLhqegvpgsrrgslVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Low Complexity Region (SEG)
MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPallyfafavfflPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTeregedgkkeggfkRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Disordered region (IsUnstruct)
****ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIG*******************LYG**EGLSWVAKPVT****LAL***********VPLMDPLVTLFGSV*****************F************************************************************************************STGIGGGWQLAWKWTER*********GFKRIYLHQE*********LVSVPGYDVPEEGEYIQAAALVSQPALY*************************SWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMD*****
Disordered Region (DISOPRED)
*NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGE******************YIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEK*****SM*STLFPTFGSMF*****************************************************************************AVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALY******************************LEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Disordered Region (DISEMBL)
MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGDEL*********KDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEH******************HASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRR*************STGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Disordered Region (DISPRO)
*NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTF**************************************************************************************GIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVA***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	592	2.2.26 [Sep-21-2011]
Q8LPQ8	729	Monosaccharide-sensing pr	yes	no	0.976	0.792	0.716	0.0
Q96290	734	Monosaccharide-sensing pr	no	no	0.967	0.780	0.655	0.0
Q9SD00	729	Monosaccharide-sensing pr	no	no	0.945	0.768	0.616	0.0
C0SPB2	457	Putative metabolite trans	yes	no	0.339	0.439	0.372	3e-34
Q9C757	580	Probable inositol transpo	no	no	0.373	0.381	0.382	1e-32
Q96QE2	648	Proton myo-inositol cotra	yes	no	0.351	0.320	0.360	3e-32
Q9ZQP6	580	Probable inositol transpo	no	no	0.378	0.386	0.369	3e-32
O52733	457	D-xylose-proton symporter	yes	no	0.347	0.450	0.394	4e-32
P94493	471	Putative metabolite trans	no	no	0.349	0.439	0.386	2e-31
Q8VZ80	539	Polyol transporter 5 OS=A	no	no	0.336	0.369	0.368	4e-31

>sp|Q8LPQ8|MSSP2_ARATH Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/596 (71%), Positives = 499/596 (83%), Gaps = 18/596 (3%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGT--TVEGLVVAMSLIGATAIT 58
           M+GA LVAIAA +GN LQGWDNATIAGA++YIKK+ NL +  +VEGL+VAMSLIGAT IT
Sbjct: 1   MSGAVLVAIAAAVGNLLQGWDNATIAGAVLYIKKEFNLESNPSVEGLIVAMSLIGATLIT 60

Query: 59  TCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLY 118
           TCSG ++DWLGRRPMLILSS+LYFV  LVMLWSPNVYVL + RLLDGFGVGL VTLVP+Y
Sbjct: 61  TCSGGVADWLGRRPMLILSSILYFVGSLVMLWSPNVYVLLLGRLLDGFGVGLVVTLVPIY 120

Query: 119 ISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAF 178
           ISETAP EIRG LNTLPQFTGSGGMFL+YCMVFGMSL+ SPSWRLMLGVL IP+L++F  
Sbjct: 121 ISETAPPEIRGLLNTLPQFTGSGGMFLSYCMVFGMSLMPSPSWRLMLGVLFIPSLVFFFL 180

Query: 179 AVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGP 238
            VFFLPESPRWLVSKG+MLEAK+VLQRLRGREDVSGEMALLVEGLGIGGET+IEEYIIGP
Sbjct: 181 TVFFLPESPRWLVSKGRMLEAKRVLQRLRGREDVSGEMALLVEGLGIGGETTIEEYIIGP 240

Query: 239 GDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGS-LANQSVPLMDPL 297
            DE+ D  +   +KD+I+LYG EEGLSWVA+PV G S+++++SR GS ++ +   L+DPL
Sbjct: 241 ADEVTDDHDIAVDKDQIKLYGAEEGLSWVARPVKGGSTMSVLSRHGSTMSRRQGSLIDPL 300

Query: 298 VTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGA 357
           VTLFGSVHEK+P++GSMRS LFP FGSMFS   +  +H+ WDEE+L  EGED+ SD  G 
Sbjct: 301 VTLFGSVHEKMPDTGSMRSALFPHFGSMFSVGGNQPRHEDWDEENLVGEGEDYPSD-HGD 359

Query: 358 DSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGS-GEAVGSTGIGGGWQL 416
           DS+D+LHSPLISRQTTSMEKDM    +HG+ LS  RH S +QG+ GE  GS GIGGGWQ+
Sbjct: 360 DSEDDLHSPLISRQTTSMEKDMPH-TAHGT-LSTFRHGSQVQGAQGEGAGSMGIGGGWQV 417

Query: 417 AWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQP 476
           AWKWTERE E G+KE          EG PGSRRGS+VS+PG D   E +++QA+ALVSQP
Sbjct: 418 AWKWTEREDESGQKE----------EGFPGSRRGSIVSLPGGDGTGEADFVQASALVSQP 467

Query: 477 ALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGV 536
           ALYSK+L+ +H +GPAMVHPSET +KG  W  L + GVKRAL+VGVG+QILQQFSGINGV
Sbjct: 468 ALYSKDLLKEHTIGPAMVHPSET-TKGSIWHDLHDPGVKRALVVGVGLQILQQFSGINGV 526

Query: 537 LYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           LYYTPQILEQAGV +LLSN+GISS SAS LISA TTF+MLP I VAM+LMD++GRR
Sbjct: 527 LYYTPQILEQAGVGILLSNMGISSSSASLLISALTTFVMLPAIAVAMRLMDLSGRR 582

Arabidopsis thaliana (taxid: 3702)

>sp|Q96290|MSSP1_ARATH Monosaccharide-sensing protein 1 OS=Arabidopsis thaliana GN=MSSP1 PE=1 SV=2

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/604 (65%), Positives = 467/604 (77%), Gaps = 31/604 (5%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GA LVA+AATIGNFLQGWDNATIAGA+VYI KDLNL T+V+GLVVAMSLIGAT ITTC
Sbjct: 1   MKGATLVALAATIGNFLQGWDNATIAGAMVYINKDLNLPTSVQGLVVAMSLIGATVITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SGPISDWLGRRPMLILSSV+YFV GL+MLWSPNVYVLC ARLL+GFG GLAVTLVP+YIS
Sbjct: 61  SGPISDWLGRRPMLILSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAGLAVTLVPVYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAP EIRG+LNTLPQF GSGGMFL+YCMVF MSL  SPSWR MLGVLSIP+LLY    V
Sbjct: 121 ETAPPEIRGQLNTLPQFLGSGGMFLSYCMVFTMSLSDSPSWRAMLGVLSIPSLLYLFLTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKG+M EAK+VLQ+L GREDV+ EMALLVEGL IGGE ++E+ ++   D
Sbjct: 181 FYLPESPRWLVSKGRMDEAKRVLQQLCGREDVTDEMALLVEGLDIGGEKTMEDLLVTLED 240

Query: 241 ELADGE-EPTDEKDKIRLYGPEEGLSWVAKPVTGQ-SSLALVSRQGSLANQSVPLMDPLV 298
              D   E  DE  ++RLYG  E  S++A+PV  Q SSL L SR GSLANQS+ L DPLV
Sbjct: 241 HEGDDTLETVDEDGQMRLYGTHENQSYLARPVPEQNSSLGLRSRHGSLANQSMILKDPLV 300

Query: 299 TLFGSVHEKLPES-GSMRSTLFPTFGSMFSTAEH--HVKHDHWD---EESLQREGEDHAS 352
            LFGS+HEK+PE+ G+ RS +FP FGSMFST     H K  HW+   E    ++ +D+A+
Sbjct: 301 NLFGSLHEKMPEAGGNTRSGIFPHFGSMFSTTADAPHGKPAHWEKDIESHYNKDNDDYAT 360

Query: 353 ---DIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTG 409
                   DSD++L SPL+SRQTTSM+KDM   P+ GS LSMRRHS+LMQG+GE+  S G
Sbjct: 361 DDGAGDDDDSDNDLRSPLMSRQTTSMDKDMIPHPTSGSTLSMRRHSTLMQGNGES--SMG 418

Query: 410 IGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPE-EGEYIQ 468
           IGGGW + +++   E         +KR YL ++G   SRRGS++S+PG   P+  G YI 
Sbjct: 419 IGGGWHMGYRYENDE---------YKRYYLKEDGAE-SRRGSIISIPGG--PDGGGSYIH 466

Query: 469 AAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQ 528
           A+ALVS+  L  K +      G AMV P + A+ GP W+ALLE GVKRAL+VGVGIQILQ
Sbjct: 467 ASALVSRSVLGPKSVH-----GSAMVPPEKIAASGPLWSALLEPGVKRALVVGVGIQILQ 521

Query: 529 QFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV 588
           QFSGINGVLYYTPQILE+AGV++LLS+LG+SS SASFLIS  TT LMLP I VAM+LMDV
Sbjct: 522 QFSGINGVLYYTPQILERAGVDILLSSLGLSSISASFLISGLTTLLMLPAIVVAMRLMDV 581

Query: 589 AGRR 592
           +GRR
Sbjct: 582 SGRR 585

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SD00|MSSP3_ARATH Monosaccharide-sensing protein 3 OS=Arabidopsis thaliana GN=MSSP3 PE=2 SV=1

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/602 (61%), Positives = 438/602 (72%), Gaps = 42/602 (6%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGT--TVEGLVVAMSLIGATAIT 58
           M    LVA+AA IGN LQGWDNATIAGA++YIKK+ +L     +EGL+VAMSLIGAT IT
Sbjct: 1   MRSVVLVALAAAIGNMLQGWDNATIAGAVIYIKKEFHLEKEPKIEGLIVAMSLIGATLIT 60

Query: 59  TCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLY 118
           T SGP+SD +GRR MLILSSVLYF+S +VM WSPNVYVL  ARLLDGFG+GLAVTLVP+Y
Sbjct: 61  TFSGPVSDKVGRRSMLILSSVLYFLSSIVMFWSPNVYVLLFARLLDGFGIGLAVTLVPIY 120

Query: 119 ISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAF 178
           ISETAPSEIRG LNT PQF GSGGMFL+YC+VFGMSL  SPSWRLMLGVLSIP++ YF  
Sbjct: 121 ISETAPSEIRGLLNTFPQFCGSGGMFLSYCLVFGMSLQESPSWRLMLGVLSIPSIAYFVL 180

Query: 179 AVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGP 238
           A FFLPESPRWLVSKG+M EA+QVLQRLRGREDVSGE+ALLVEGLG+G +TSIEEY+IGP
Sbjct: 181 AAFFLPESPRWLVSKGRMDEARQVLQRLRGREDVSGELALLVEGLGVGKDTSIEEYVIGP 240

Query: 239 GDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLV 298
            +E  +G      KD+I+LYGPE+G SW+AKPV GQSSLAL SRQGS+  +   LMDPLV
Sbjct: 241 DNEENEGGNELPRKDQIKLYGPEDGQSWMAKPVKGQSSLALASRQGSMLPRGGSLMDPLV 300

Query: 299 TLFGSVHEKLPE---SGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIA 355
           TLFGS+HE LP    + S RS LFP  GS+        +   WD E   R  ED      
Sbjct: 301 TLFGSIHENLPSENMNASSRSMLFPNMGSILGMMGR--QESQWDPE---RNNEDS----- 350

Query: 356 GADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSL-MQGSGEAVGSTGIGGGW 414
            +D D+NL+SPL+S QTT  E D     + G++   RR SSL M   GE   +T IGGGW
Sbjct: 351 -SDQDENLNSPLLSPQTT--EPDDYHQRTVGTM--HRRQSSLFMANVGETATATSIGGGW 405

Query: 415 QLAWKWTEREGEDGKK-EGGFKRIYLHQE-------GVPGSRRGSLVSV----PGYDVPE 462
           QLAWK+ ++ G DGK+  GG +R+Y+H+E        +P SRRGSL+S      G+D  +
Sbjct: 406 QLAWKYNDKVGADGKRVNGGLQRMYIHEETANNNTNNIPFSRRGSLLSFHPEGDGHD--Q 463

Query: 463 EGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGV 522
              Y+QAAALVSQ +      M     G   + P E    GP W  L E GVKRAL+VGV
Sbjct: 464 VNGYVQAAALVSQAS------MMPGGKGETAMLPKEV-KDGPGWRELKEPGVKRALMVGV 516

Query: 523 GIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVA 582
           G+QILQQF+GINGV+YYTPQILE+ GV  LL+NLGIS+ESAS LISA TT LMLPCI V+
Sbjct: 517 GLQILQQFAGINGVMYYTPQILEETGVSSLLTNLGISAESASLLISALTTLLMLPCILVS 576

Query: 583 MK 584
           M+
Sbjct: 577 MR 578

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  147 bits (371), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/204 (37%), Positives = 132/204 (64%), Gaps = 3/204 (1%)

Query: 13  IGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRP 72
           +G  L G+D   I+GAI+++KK+L L    EGLVV+  L+GA   +  +G ++D  GR+ 
Sbjct: 15  LGGALYGYDTGVISGAILFMKKELGLNAFTEGLVVSSLLVGAILGSGAAGKLTDRFGRKK 74

Query: 73  MLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLN 132
            ++ +++L+ + GL +  +PN  V+ + R++ G  VG + T+VPLY+SE AP   RG L+
Sbjct: 75  AIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALS 134

Query: 133 TLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVS 192
           +L Q   + G+ L+Y + +  +   + +WR MLG+ ++P+LL     + F+PESPRWL +
Sbjct: 135 SLNQLMITVGILLSYIVNYIFA--DAEAWRWMLGLAAVPSLLLL-IGILFMPESPRWLFT 191

Query: 193 KGKMLEAKQVLQRLRGREDVSGEM 216
            G+  +AK++L++LRG +D+  E+
Sbjct: 192 NGEESKAKKILEKLRGTKDIDQEI 215

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9C757|INT2_ARATH Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=1 SV=1

 Score =  142 bits (357), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 137/230 (59%), Gaps = 9/230 (3%)

Query: 7   VAIAATIGNFLQGWDNATIAGAIVYIKKDL---NLGTTVEGLVVAMSLIGATAITTCSGP 63
           +A +A IG  L G+D   I+GA++YI+ D    +  T ++ ++V+M++ GA       G 
Sbjct: 31  LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGW 90

Query: 64  ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
            +D LGRR  ++++  L+ +  ++M  +PN  +L + R+  G GVG+A    PLYISE +
Sbjct: 91  ANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEAS 150

Query: 124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL 183
           P++IRG L +   F  +GG FL+Y +    + + + +WR MLG+  IPALL F   +F L
Sbjct: 151 PAKIRGALVSTNGFLITGGQFLSYLINLAFTDV-TGTWRWMLGIAGIPALLQFVL-MFTL 208

Query: 184 PESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEE 233
           PESPRWL  KG+  EAK +L+R+   EDV  E+  L + +    ET I E
Sbjct: 209 PESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSV----ETEILE 254

Plasma membrane inositol-proton symporter. Specific for several inositol epimers, such as myoinositol and scylloinositol. D-chiroinositol, mucoinositol, alloinositol and pinitol are also transported with a lower activity. Not active with galactinol and phytate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q96QE2|MYCT_HUMAN Proton myo-inositol cotransporter OS=Homo sapiens GN=SLC2A13 PE=1 SV=3

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 128/211 (60%), Gaps = 3/211 (1%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-PI 64
           +VA+ + +G FL G+D   ++GA++ +K+ L+L    + L+V+ S +GA A++  +G  +
Sbjct: 83  VVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVS-STVGAAAVSALAGGAL 141

Query: 65  SDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAP 124
           +   GRR  ++L+S L+     V+  + N   L   RL+ G G+G+A   VP+YI+E +P
Sbjct: 142 NGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 201

Query: 125 SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLP 184
             +RGRL T+     +GG F A  +    S L    WR MLG+ ++PA++ F F   FLP
Sbjct: 202 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQF-FGFLFLP 260

Query: 185 ESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
           ESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct: 261 ESPRWLIQKGQTQKARRILSQMRGNQTIDEE 291

H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.

Homo sapiens (taxid: 9606)

>sp|Q9ZQP6|INT3_ARATH Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 141/233 (60%), Gaps = 9/233 (3%)

Query: 7   VAIAATIGNFLQGWDNATIAGAIVYIKKDL---NLGTTVEGLVVAMSLIGATAITTCSGP 63
           +A++A IG  L G++   IAGA++YIK++    +  T ++ ++V+M++ GA       G 
Sbjct: 29  LALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGW 88

Query: 64  ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
            +D  GRR  ++++ VL+ +  LVM+ +   +V+ + RLL GFGVG+A    PLYISE +
Sbjct: 89  YNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMS 148

Query: 124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGVLSIPALLYFAFAVFF 182
           P+ IRG L +      +GG FL+Y  +  ++ + +P +WR MLGV +IPA++ F   +  
Sbjct: 149 PARIRGALVSTNGLLITGGQFLSY--LINLAFVHTPGTWRWMLGVSAIPAIIQFCL-MLT 205

Query: 183 LPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYI 235
           LPESPRWL    +  E++ +L+R+   E V  E+A L E   +  ET+ E+ I
Sbjct: 206 LPESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKE--SVRAETADEDII 256

Plasma membrane inositol-proton symporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O52733|XYLT_LACBR D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1

 Score =  140 bits (352), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/208 (39%), Positives = 121/208 (58%), Gaps = 2/208 (0%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPIS 65
            V     +G  L G+D   I+GAI++I+K +NLG+  +G VV+  L+GA       GP S
Sbjct: 8   FVYFFGALGGLLFGYDTGVISGAILFIQKQMNLGSWQQGWVVSAVLLGAILGAAIIGPSS 67

Query: 66  DWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPS 125
           D  GRR +L+LS++++FV  L   +SP  + L I+R++ G  VG A  L+P Y++E APS
Sbjct: 68  DRFGRRKLLLLSAIIFFVGALGSAFSPEFWTLIISRIILGMAVGAASALIPTYLAELAPS 127

Query: 126 EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE 185
           + RG +++L Q     G+ LAY   +  S   +  WR MLG  +IPA L F      LPE
Sbjct: 128 DKRGTVSSLFQLMVMTGILLAYITNYSFSGFYT-GWRWMLGFAAIPAALLF-LGGLILPE 185

Query: 186 SPRWLVSKGKMLEAKQVLQRLRGREDVS 213
           SPR+LV  G + EA+ VL  +   + V+
Sbjct: 186 SPRFLVKSGHLDEARHVLDTMNKHDQVA 213

Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system).

Lactobacillus brevis (taxid: 1580)

>sp|P94493|YNCC_BACSU Putative metabolite transport protein YncC OS=Bacillus subtilis (strain 168) GN=yncC PE=3 SV=2

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/215 (38%), Positives = 130/215 (60%), Gaps = 8/215 (3%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKK--DLNLGTTVEGLVVAMSLIGATAITTCSGP 63
           L+ I+AT G  L G+D   I GA+ ++ +   L+L    EGLV ++ L+GA       G 
Sbjct: 13  LIMISATFGGLLFGYDTGVINGALPFMARPDQLDLTPVTEGLVTSILLLGAAFGALLCGR 72

Query: 64  ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
           ++D  GRR M++  S L+F++ L    +PNV+++ + R L G  VG A  +VP +++E A
Sbjct: 73  LADRYGRRKMILNLSFLFFLASLGTALAPNVFIMAVFRFLLGLAVGGASAMVPAFLAEMA 132

Query: 124 PSEIRGRLNTLPQFTGSGGMFLAYCM--VFGMSLLAS-PSWRLMLGVLSIPALLYFAFAV 180
           P E RGR+ T  +    GG FLAY    + G+++  +   WR ML + ++PA++ FA ++
Sbjct: 133 PHEKRGRMVTQNELMIVGGQFLAYVFNAILGVTMANTGHVWRYMLVICAVPAIMLFA-SM 191

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             +PESPRWL+SKGK  EA +VL+++  RED   E
Sbjct: 192 LKVPESPRWLISKGKNSEALRVLKQI--REDKRAE 224

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q8VZ80|PLT5_ARATH Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2

 Score =  136 bits (343), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 123/209 (58%), Gaps = 10/209 (4%)

Query: 2   NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVA----MSLIGATAI 57
           N A   AI A++ + L G+D   ++GA++YIK+DL +     G++       SLIG+ A 
Sbjct: 34  NYAFACAILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCA- 92

Query: 58  TTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPL 117
              +G  SDW+GRR  ++L+  ++F   ++M  SPN   L   R + G GVG A+ + P+
Sbjct: 93  ---AGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPV 149

Query: 118 YISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA-SPSWRLMLGVLSIPALLYF 176
           Y +E +P+  RG LN+ P+   + G+ L Y      S L     WRLMLG+ ++P+++  
Sbjct: 150 YTAEVSPASSRGFLNSFPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVI-L 208

Query: 177 AFAVFFLPESPRWLVSKGKMLEAKQVLQR 205
           A  V  +PESPRWLV +G++ +AK+VL +
Sbjct: 209 AIGVLAMPESPRWLVMQGRLGDAKRVLDK 237

Plasma membrane broad-spectrum sugar-proton symporter. Mediates the uptake of linear polyols such as sorbitol, xylitol, erythritol or glycerol. Can transport the cyclic polyol myo-inositol and different hexoses, pentoses (including ribose), tetroses and sugar alcohols.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
255539302	739	sugar transporter, putative [Ricinus com	1.0	0.801	0.868	0.0
224061849	738	predicted protein [Populus trichocarpa]	1.0	0.802	0.846	0.0
224086094	738	predicted protein [Populus trichocarpa]	1.0	0.802	0.847	0.0
356508504	738	PREDICTED: monosaccharide-sensing protei	0.989	0.794	0.839	0.0
356517193	737	PREDICTED: monosaccharide-sensing protei	0.989	0.795	0.833	0.0
225457626	740	PREDICTED: monosaccharide-sensing protei	0.998	0.798	0.826	0.0
147815142	740	hypothetical protein VITISV_024656 [Viti	0.998	0.798	0.824	0.0
61613105	740	hexose transporter 6 [Vitis vinifera]	0.998	0.798	0.818	0.0
449453003	729	PREDICTED: monosaccharide-sensing protei	0.983	0.798	0.810	0.0
225438426	742	PREDICTED: monosaccharide-sensing protei	0.998	0.796	0.764	0.0

>gi|255539302|ref|XP_002510716.1| sugar transporter, putative [Ricinus communis] gi|223551417|gb|EEF52903.1| sugar transporter, putative [Ricinus communis]

 Score = 1064 bits (2751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/592 (86%), Positives = 550/592 (92%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GA LVAI A IG+FLQGWDNATIAGAIVYIKKDLNL TTVEGLVVAMSLIGAT ITTC
Sbjct: 1   MKGAVLVAITACIGSFLQGWDNATIAGAIVYIKKDLNLQTTVEGLVVAMSLIGATTITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SG ISDWLGRRPMLI+SS LYFVSGL+MLWSP+VYVLCIARLLDGF +GLAVTLVP+YIS
Sbjct: 61  SGAISDWLGRRPMLIISSTLYFVSGLIMLWSPDVYVLCIARLLDGFAIGLAVTLVPVYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAPSEIRG LNTLPQFTGSGGMFL+YCMVFGMSL +SPSWRLMLGVLSIP+L+YFA  +
Sbjct: 121 ETAPSEIRGMLNTLPQFTGSGGMFLSYCMVFGMSLTSSPSWRLMLGVLSIPSLIYFALTI 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKGKMLEAK+VLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD
Sbjct: 181 FYLPESPRWLVSKGKMLEAKRVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTL 300
           EL D  EPT EKD+I+LYGPE GLSWVAKPVTGQSSLALVSR GS+ N+SVPLMDPLVTL
Sbjct: 241 ELPDDHEPTAEKDRIKLYGPEAGLSWVAKPVTGQSSLALVSRHGSMVNKSVPLMDPLVTL 300

Query: 301 FGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSD 360
           FGSVHEKLPE+GSMRS LFP FGSMFSTAE H KH+HWDEESLQREGE + S+ AG DSD
Sbjct: 301 FGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHAKHEHWDEESLQREGEGYTSEAAGEDSD 360

Query: 361 DNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKW 420
           DNLHSPLISRQTTSMEKDM  PPSHGSILSMRRHSSLMQG+GEAV STGIGGGWQLAWKW
Sbjct: 361 DNLHSPLISRQTTSMEKDMPPPPSHGSILSMRRHSSLMQGTGEAVSSTGIGGGWQLAWKW 420

Query: 421 TEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYS 480
           +EREGEDGKKEGGFKR+YLHQEG PGSRRGSLVS PG DVP EGEY+QAAALVSQPALYS
Sbjct: 421 SEREGEDGKKEGGFKRVYLHQEGAPGSRRGSLVSFPGGDVPAEGEYVQAAALVSQPALYS 480

Query: 481 KELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYT 540
           KEL+DQHPVGPAMVHP+ETA KGP WAALL+ GVKRAL+VG+GIQILQQFSGI G+LYYT
Sbjct: 481 KELLDQHPVGPAMVHPAETAKKGPIWAALLDPGVKRALIVGIGIQILQQFSGIGGILYYT 540

Query: 541 PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           PQILE+AGVEVLL+NLGI +ESASFLISAFTTFLMLPCI V M+LMDV+GRR
Sbjct: 541 PQILEEAGVEVLLANLGIGTESASFLISAFTTFLMLPCIAVGMRLMDVSGRR 592

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061849|ref|XP_002300629.1| predicted protein [Populus trichocarpa] gi|222842355|gb|EEE79902.1| predicted protein [Populus trichocarpa]

 Score = 1042 bits (2695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/592 (84%), Positives = 543/592 (91%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GA+LVAIAA +GNFLQGWDNATIAGA++Y+KKDL L ++VEGLVVAMSLIGA AITTC
Sbjct: 1   MKGASLVAIAACVGNFLQGWDNATIAGAVIYVKKDLKLQSSVEGLVVAMSLIGAAAITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SGPISDW+GRRPMLI SS+LYFVSGLVM WSPNVYVLCI RLLDGFGVGLAVTL+PLYIS
Sbjct: 61  SGPISDWIGRRPMLISSSILYFVSGLVMFWSPNVYVLCIGRLLDGFGVGLAVTLIPLYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAPS+IRG LNTLPQF GSGGMFL+YCMVFGMSL  SPSWR+MLG+LSIP+LLYF   V
Sbjct: 121 ETAPSDIRGMLNTLPQFAGSGGMFLSYCMVFGMSLTTSPSWRMMLGILSIPSLLYFVLTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALL EGLGIGGETSIEEYIIGP D
Sbjct: 181 FYLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLAEGLGIGGETSIEEYIIGPAD 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTL 300
           E+ADG+EP  +KDKI+LYGPEEGLSWVAKPVTGQSSLALVSRQGS+ NQ VPLMDPLVTL
Sbjct: 241 EVADGQEPIVDKDKIKLYGPEEGLSWVAKPVTGQSSLALVSRQGSMVNQGVPLMDPLVTL 300

Query: 301 FGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSD 360
           FGSVHEKLPE+GSMRS LFP FGSMFSTAE H + + WDEES+QREGE + S+  G DSD
Sbjct: 301 FGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHFRTEQWDEESVQREGEGYTSEAGGEDSD 360

Query: 361 DNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKW 420
           DNLHSPLISRQTTSMEKDMA P SHGS LSMRRHSSL+QG+GEAV  TGIGGGWQLAWKW
Sbjct: 361 DNLHSPLISRQTTSMEKDMAHPTSHGSALSMRRHSSLLQGAGEAVDGTGIGGGWQLAWKW 420

Query: 421 TEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYS 480
           +EREGEDGKKEGGFKRIYLHQEGVPGSRRGS+VS+PG DVP EGEYIQAAALVSQPALYS
Sbjct: 421 SEREGEDGKKEGGFKRIYLHQEGVPGSRRGSVVSLPGGDVPVEGEYIQAAALVSQPALYS 480

Query: 481 KELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYT 540
           KELMDQHPVGPAMVHPS+TA+K P WAALLE GVK AL VG+GIQ+LQQF+GINGVLYYT
Sbjct: 481 KELMDQHPVGPAMVHPSQTATKAPIWAALLEPGVKHALFVGMGIQLLQQFAGINGVLYYT 540

Query: 541 PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           PQILE AGV VLL+NLG+S+ SASFLISAFT  LMLPCIGVAMKLMD++GRR
Sbjct: 541 PQILEDAGVSVLLANLGLSTNSASFLISAFTNLLMLPCIGVAMKLMDISGRR 592

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224086094|ref|XP_002307812.1| predicted protein [Populus trichocarpa] gi|222857261|gb|EEE94808.1| predicted protein [Populus trichocarpa]

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/592 (84%), Positives = 543/592 (91%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GAALVAIAA IGNFLQGWDNATIAGAI+Y+ KDL L  +VEGLVVAMSLIGA AITTC
Sbjct: 1   MKGAALVAIAACIGNFLQGWDNATIAGAIIYVNKDLKLQASVEGLVVAMSLIGAAAITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SGPISDWLGRRPMLI+SS+LYFVSGLVM WSPNVYVLCI RLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGPISDWLGRRPMLIISSILYFVSGLVMFWSPNVYVLCIGRLLDGFGIGLAVTLVPVYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAPS+IRG LNTLPQF GSGGMFL+YCM+FGMSL ASPSWRLMLG+LSIP+LLYFA  V
Sbjct: 121 ETAPSDIRGMLNTLPQFAGSGGMFLSYCMIFGMSLTASPSWRLMLGILSIPSLLYFALTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKGKMLEAK+VLQRLRGREDVSGEMALL EGLGIGGETSIEEYIIGP D
Sbjct: 181 FYLPESPRWLVSKGKMLEAKRVLQRLRGREDVSGEMALLAEGLGIGGETSIEEYIIGPAD 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTL 300
           ELA+G+EPT +KDKI+LYGPEEGLSWVAKPVTGQSSLAL SR GS+ +Q VPLMDPLVTL
Sbjct: 241 ELANGQEPTVDKDKIKLYGPEEGLSWVAKPVTGQSSLALASRHGSMVSQGVPLMDPLVTL 300

Query: 301 FGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSD 360
           FGSVHEKLPE+GSMRS LFP FGSMFSTAE H + + WDEES+QREGE + S+  G DSD
Sbjct: 301 FGSVHEKLPETGSMRSMLFPNFGSMFSTAEPHFRTEQWDEESVQREGEGYTSEAGGGDSD 360

Query: 361 DNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKW 420
           DNL SPLISRQTTSMEKDMA P SHGS+LSMRRHSSLMQG G+AV  TGIGGGWQLAWKW
Sbjct: 361 DNLQSPLISRQTTSMEKDMAHPTSHGSVLSMRRHSSLMQGVGDAVDGTGIGGGWQLAWKW 420

Query: 421 TEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYS 480
           +EREGEDGKKEGGFKRIYLHQ GVPGSRRGSLVS+PG DVPEEGEYIQAAALVSQPALYS
Sbjct: 421 SEREGEDGKKEGGFKRIYLHQGGVPGSRRGSLVSLPGGDVPEEGEYIQAAALVSQPALYS 480

Query: 481 KELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYT 540
           KELMDQHPVGPAMVHPS+TA+K P W ALLE GVK AL VG+GIQ+LQQF+GINGVLYYT
Sbjct: 481 KELMDQHPVGPAMVHPSQTATKAPIWTALLEPGVKHALFVGIGIQLLQQFAGINGVLYYT 540

Query: 541 PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           PQILE+AGV VLL+NLG+S+ SASFLISAFT FLMLPCIGVAM+LMD+AGRR
Sbjct: 541 PQILEKAGVSVLLANLGLSTTSASFLISAFTNFLMLPCIGVAMRLMDIAGRR 592

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508504|ref|XP_003522996.1| PREDICTED: monosaccharide-sensing protein 2-like [Glycine max]

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/597 (83%), Positives = 546/597 (91%), Gaps = 11/597 (1%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GA LVAIAA+IGNFLQGWDNATIAGAIVYIKKDL L TT+EGLVVAMSLIGAT ITTC
Sbjct: 1   MKGAVLVAIAASIGNFLQGWDNATIAGAIVYIKKDLALQTTMEGLVVAMSLIGATVITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SGPI+DWLGRRPM+I+SSVLYF+ GLVMLWSPNVYVLC+ARLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGPIADWLGRRPMMIISSVLYFLGGLVMLWSPNVYVLCLARLLDGFGIGLAVTLVPVYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAPSEIRG LNTLPQF+GSGGMFL+YCMVFGMSL  +PSWRLMLGVLSIP+LLYFA  +
Sbjct: 121 ETAPSEIRGSLNTLPQFSGSGGMFLSYCMVFGMSLSPAPSWRLMLGVLSIPSLLYFALTI 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           FFLPESPRWLVSKG+MLEAK+VLQRLRGREDVSGEMALLVEGLGIGG+TSIEEYIIGP D
Sbjct: 181 FFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLVEGLGIGGDTSIEEYIIGPAD 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTL 300
           E+ADG E   EKDKIRLYG + GLSW+AKPVTGQSS+ L SR GS+ NQS+PLMDPLVTL
Sbjct: 241 EVADGHEHATEKDKIRLYGSQAGLSWLAKPVTGQSSIGLASRHGSIINQSMPLMDPLVTL 300

Query: 301 FGSVHEKLPES---GSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGA 357
           FGS+HEKLPE+   GSMRSTLFP FGSMFSTAE H K++ WDEESLQREGED+ SD AG 
Sbjct: 301 FGSIHEKLPETGAGGSMRSTLFPNFGSMFSTAEPHAKNEQWDEESLQREGEDYMSDAAGG 360

Query: 358 DSDDNLHSPLISRQTTSMEKDM-AAPPSHGSIL-SMRRHSSLMQGSGEAVGSTGIGGGWQ 415
           DSDDNLHSPLISRQTTS+EKD+   PPSHGSIL SMRRHSSLMQGSGE  GSTGIGGGWQ
Sbjct: 361 DSDDNLHSPLISRQTTSLEKDLPPPPPSHGSILGSMRRHSSLMQGSGEQGGSTGIGGGWQ 420

Query: 416 LAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQ 475
           LAWKWT++ GEDGK++GGFKRIYLH+EGV  SRRGS+VS+PG     EGE++QAAALVSQ
Sbjct: 421 LAWKWTDK-GEDGKQQGGFKRIYLHEEGVSASRRGSIVSIPG-----EGEFVQAAALVSQ 474

Query: 476 PALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGING 535
           PALYSKEL+D HPVGPAMVHPSETASKGPSW ALLE GVK AL+VGVGIQILQQFSGING
Sbjct: 475 PALYSKELIDGHPVGPAMVHPSETASKGPSWKALLEPGVKHALVVGVGIQILQQFSGING 534

Query: 536 VLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           VLYYTPQILE+AGVEVLLS++GI SESASFLISAFTTFLMLPCIGVAMKLMDV+GRR
Sbjct: 535 VLYYTPQILEEAGVEVLLSDIGIGSESASFLISAFTTFLMLPCIGVAMKLMDVSGRR 591

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517193|ref|XP_003527273.1| PREDICTED: monosaccharide-sensing protein 2-like [Glycine max]

 Score =  974 bits (2518), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/596 (83%), Positives = 544/596 (91%), Gaps = 10/596 (1%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GA LVAIAA+IGNFLQGWDNATIAGAIVYIKKDL L TT+EGLVVAMSLIGAT ITTC
Sbjct: 1   MKGAVLVAIAASIGNFLQGWDNATIAGAIVYIKKDLALETTMEGLVVAMSLIGATVITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SGP++DWLGRRPM+I+SSVLYF+ GLVMLWSPNVYVLC+ARLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGPVADWLGRRPMMIISSVLYFLGGLVMLWSPNVYVLCLARLLDGFGIGLAVTLVPVYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAPSEIRG LNTLPQF+GSGGMFL+YCMVFGMSL  +PSWRLMLGVLSIP+LLYFA  +
Sbjct: 121 ETAPSEIRGSLNTLPQFSGSGGMFLSYCMVFGMSLSPAPSWRLMLGVLSIPSLLYFALTI 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           FFLPESPRWLVSKG+MLEAK+VLQRLRGREDVSGEMALLVEGLGIGG+TSIEEYIIGP D
Sbjct: 181 FFLPESPRWLVSKGRMLEAKKVLQRLRGREDVSGEMALLVEGLGIGGDTSIEEYIIGPAD 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTL 300
           ++ADG E   EKDKIRLYG + GLSW+AKPVTGQSS+ L SR GS+ NQS+PLMDPLVTL
Sbjct: 241 KVADGHEHATEKDKIRLYGSQAGLSWLAKPVTGQSSIGLASRHGSIINQSMPLMDPLVTL 300

Query: 301 FGSVHEKLPES---GSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGA 357
           FGS+HEKLPE+   GSMRSTLFP FGSMFSTAE HVK++ WDEESLQREGED+ SD A  
Sbjct: 301 FGSIHEKLPETGAGGSMRSTLFPNFGSMFSTAEPHVKNEQWDEESLQREGEDYMSDAADG 360

Query: 358 DSDDNLHSPLISRQTTSMEKDMAAPPSHGSIL-SMRRHSSLMQGSGEAVGSTGIGGGWQL 416
           DSDDNLHSPLISRQTTS+EKD+  PPSHGSIL SMRRHSSLMQGSGE  GSTGIGGGWQL
Sbjct: 361 DSDDNLHSPLISRQTTSLEKDLPPPPSHGSILGSMRRHSSLMQGSGEQGGSTGIGGGWQL 420

Query: 417 AWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQP 476
           AWKWT+++ EDGK +GGFKRIYLH+EGV  S RGS+VS+PG     EGE++QAAALVSQP
Sbjct: 421 AWKWTDKD-EDGKHQGGFKRIYLHEEGVSASHRGSIVSIPG-----EGEFVQAAALVSQP 474

Query: 477 ALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGV 536
           ALYSKEL+D HPVGPAMVHPSETASKGPSW ALLE GVK AL+VGVGIQILQQFSGINGV
Sbjct: 475 ALYSKELIDGHPVGPAMVHPSETASKGPSWKALLEPGVKHALIVGVGIQILQQFSGINGV 534

Query: 537 LYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           LYYTPQILE+AGVEVLLS++GI SESASFLISAFTTFLMLPCIGVAMKLMDV+GRR
Sbjct: 535 LYYTPQILEEAGVEVLLSDIGIGSESASFLISAFTTFLMLPCIGVAMKLMDVSGRR 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457626|ref|XP_002274415.1| PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera] gi|63334145|gb|AAY40466.1| putative hexose transporter [Vitis vinifera] gi|310877832|gb|ADP37147.1| putative tonoplastic monosaccharide transporter [Vitis vinifera]

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/594 (82%), Positives = 541/594 (91%), Gaps = 3/594 (0%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           MNGA LVAIAA IGNFLQGWDNATIAGAIVYIKK+L+L +TVEGLVVAMSLIGAT +TTC
Sbjct: 1   MNGAVLVAIAAAIGNFLQGWDNATIAGAIVYIKKELDLESTVEGLVVAMSLIGATLVTTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SG ISDW+GRRPMLI+SS+LYF+SGL+MLWSPNVYVL IARLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGAISDWIGRRPMLIVSSMLYFISGLIMLWSPNVYVLLIARLLDGFGIGLAVTLVPIYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAP++IRG LNTLPQFTGSGGMFL+YCMVFGMSLL+SPSWRLMLG+LSIP+LLYFA  V
Sbjct: 121 ETAPADIRGSLNTLPQFTGSGGMFLSYCMVFGMSLLSSPSWRLMLGILSIPSLLYFALTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKG+M+EAK+VLQRLRGREDVS EMALLVEGLGIGGETSIEEYIIGP  
Sbjct: 181 FYLPESPRWLVSKGRMVEAKKVLQRLRGREDVSAEMALLVEGLGIGGETSIEEYIIGPTG 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVT-GQSSLALVSRQGSLANQSVPLMDPLVT 299
           EL + ++P   KD+I+LYGPE GLSWVAKPV  GQS+L+LVSRQGSLA Q++PLMDPLVT
Sbjct: 241 ELTEDQDPDAVKDQIKLYGPEAGLSWVAKPVPGGQSTLSLVSRQGSLATQTLPLMDPLVT 300

Query: 300 LFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADS 359
           LFGSVHEKLPE+GSMRS LFP FGSMFSTA+  +K + WDEESLQREGED+ASD  G DS
Sbjct: 301 LFGSVHEKLPETGSMRSMLFPNFGSMFSTADPQIKTEQWDEESLQREGEDYASD-GGGDS 359

Query: 360 DDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQ-GSGEAVGSTGIGGGWQLAW 418
           D +L SPLISRQT+SMEKDM  PPSH SI+SMRRHSSLMQ  +GEA G  GIGGGWQLAW
Sbjct: 360 DHDLQSPLISRQTSSMEKDMVPPPSHSSIMSMRRHSSLMQGTAGEAAGGMGIGGGWQLAW 419

Query: 419 KWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPAL 478
           KW+EREGEDGKKEGGFKRIYLH+EGVPGSRRGSLVS+PG DVP EG+YIQAAALVSQPAL
Sbjct: 420 KWSEREGEDGKKEGGFKRIYLHEEGVPGSRRGSLVSLPGGDVPAEGDYIQAAALVSQPAL 479

Query: 479 YSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLY 538
           YSKELMDQ PVGPAMVHP+ETAS+GP WAALLE GVK AL VG GIQILQQFSGINGVLY
Sbjct: 480 YSKELMDQDPVGPAMVHPAETASRGPMWAALLEPGVKHALFVGAGIQILQQFSGINGVLY 539

Query: 539 YTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           YTPQILE+AGVEVLL +LG+ +ESASFLISAFTT LMLPCI VAMKLMD+ GRR
Sbjct: 540 YTPQILEEAGVEVLLESLGLGTESASFLISAFTTLLMLPCIVVAMKLMDIVGRR 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815142|emb|CAN59780.1| hypothetical protein VITISV_024656 [Vitis vinifera]

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/594 (82%), Positives = 541/594 (91%), Gaps = 3/594 (0%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           MNGA LVAIAA IGNFLQGWDNATIAGAIVYIKK+L+L +TVEGLVVAMSLIGAT +TTC
Sbjct: 1   MNGAVLVAIAAAIGNFLQGWDNATIAGAIVYIKKELDLESTVEGLVVAMSLIGATLVTTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SG ISDW+GRRPMLI+SS+LYF+SGL+MLWSPNVYVL IARLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGAISDWIGRRPMLIVSSMLYFISGLIMLWSPNVYVLLIARLLDGFGIGLAVTLVPIYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAP++IRG LNTLPQFTGSGGMFL+YCMVFGMSLL+SPSWRLMLG+LSIP+LLYFA  V
Sbjct: 121 ETAPADIRGSLNTLPQFTGSGGMFLSYCMVFGMSLLSSPSWRLMLGILSIPSLLYFALTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKG+M+EAK+VLQRLRGREDVS EMALLVEGLGIGGETSIEEYIIGP  
Sbjct: 181 FYLPESPRWLVSKGRMVEAKKVLQRLRGREDVSAEMALLVEGLGIGGETSIEEYIIGPTG 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVT-GQSSLALVSRQGSLANQSVPLMDPLVT 299
           EL + ++P   KD+I+LYGPE GLSWVAKPV  GQS+L+LVSRQGSLA Q++PLMDPLVT
Sbjct: 241 ELTEDQDPDAVKDQIKLYGPEAGLSWVAKPVPGGQSTLSLVSRQGSLATQTLPLMDPLVT 300

Query: 300 LFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADS 359
           LFGSVHEKLPE+GSMRS LFP FGSMFSTA+  +K + WDEESLQ+EGED+ASD  G DS
Sbjct: 301 LFGSVHEKLPETGSMRSMLFPNFGSMFSTADPQIKTEQWDEESLQQEGEDYASD-GGGDS 359

Query: 360 DDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQ-GSGEAVGSTGIGGGWQLAW 418
           D +L SPLISRQT+SMEKDM  PPSH SI+SMRRHSSLMQ  +GEA G  GIGGGWQLAW
Sbjct: 360 DHDLQSPLISRQTSSMEKDMVPPPSHSSIMSMRRHSSLMQGTAGEAAGGMGIGGGWQLAW 419

Query: 419 KWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPAL 478
           KW+EREGEDGKKEGGFKRIYLH+EGVPGSRRGSLVS+PG DVP EG+YIQAAALVSQPAL
Sbjct: 420 KWSEREGEDGKKEGGFKRIYLHEEGVPGSRRGSLVSLPGGDVPAEGDYIQAAALVSQPAL 479

Query: 479 YSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLY 538
           YSKELMDQ PVGPAMVHP+ETAS+GP WAALLE GVK AL VG GIQILQQFSGINGVLY
Sbjct: 480 YSKELMDQDPVGPAMVHPAETASRGPMWAALLEPGVKHALFVGAGIQILQQFSGINGVLY 539

Query: 539 YTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           YTPQILE+AGVEVLL +LG+ +ESASFLISAFTT LMLPCI VAMKLMD+ GRR
Sbjct: 540 YTPQILEEAGVEVLLESLGLGTESASFLISAFTTLLMLPCIVVAMKLMDIVGRR 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|61613105|gb|AAX47312.1| hexose transporter 6 [Vitis vinifera]

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/594 (81%), Positives = 537/594 (90%), Gaps = 3/594 (0%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           MNGA LVAIAA IGNFLQGWDNATIAGAIVYIKK+L+L +TVEGLVVAMSLIGAT +TTC
Sbjct: 1   MNGAVLVAIAAAIGNFLQGWDNATIAGAIVYIKKELDLESTVEGLVVAMSLIGATLVTTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SG ISDW+GRRPMLI+SS+LYF+SGL+MLWSPNVYVL IARLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGAISDWIGRRPMLIVSSMLYFISGLIMLWSPNVYVLLIARLLDGFGIGLAVTLVPIYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAP++IRG LNTLPQFTGSGGMFL+YCMVFGMSLL+SPSWRLMLG+LSIP+LLYF   V
Sbjct: 121 ETAPADIRGSLNTLPQFTGSGGMFLSYCMVFGMSLLSSPSWRLMLGILSIPSLLYFTLTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           F+LPESPRWLVSKG+M+EAK+VLQRLRGREDVS EMALLVEGLGIGGETSIEEYIIGP  
Sbjct: 181 FYLPESPRWLVSKGRMVEAKKVLQRLRGREDVSAEMALLVEGLGIGGETSIEEYIIGPTG 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVT-GQSSLALVSRQGSLANQSVPLMDPLVT 299
           EL + ++P   KD+I+LYGPE GLSWVAKPV  GQS+L+LV RQGSLA Q++PLMDPLVT
Sbjct: 241 ELTEDQDPDAVKDQIKLYGPEAGLSWVAKPVPGGQSTLSLVPRQGSLATQTLPLMDPLVT 300

Query: 300 LFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADS 359
           LFGSVHEK PE+GSMRS LFP FGSMFSTA+  +K + WDEESLQ+EGED+ASD  G DS
Sbjct: 301 LFGSVHEKPPETGSMRSMLFPNFGSMFSTADPQIKTEQWDEESLQQEGEDYASD-GGGDS 359

Query: 360 DDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQ-GSGEAVGSTGIGGGWQLAW 418
           D +L SPLISRQT+SMEKDM  PPSH SI+SMRRHSSLMQ  +GEA G  GIGGGWQLAW
Sbjct: 360 DHDLQSPLISRQTSSMEKDMVPPPSHSSIMSMRRHSSLMQGTAGEAAGGMGIGGGWQLAW 419

Query: 419 KWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPAL 478
           KW+EREGEDGKKEGGFKRIYLH+EGVPGSRRGSLVS+PG DVP EG+YIQAAALVSQPAL
Sbjct: 420 KWSEREGEDGKKEGGFKRIYLHEEGVPGSRRGSLVSLPGGDVPAEGDYIQAAALVSQPAL 479

Query: 479 YSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLY 538
           YSKELMDQ PVGPAMVHP+ETAS+GP WAALLE GVK AL VG GIQILQQFSGINGVLY
Sbjct: 480 YSKELMDQDPVGPAMVHPAETASRGPMWAALLEPGVKHALFVGAGIQILQQFSGINGVLY 539

Query: 539 YTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           YTPQILE+AGVEVLL +LG+ +ESASFLISAFTT LMLP I VAMKLMD+ GRR
Sbjct: 540 YTPQILEEAGVEVLLESLGLGTESASFLISAFTTLLMLPSIVVAMKLMDIVGRR 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453003|ref|XP_004144248.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus] gi|449528279|ref|XP_004171132.1| PREDICTED: monosaccharide-sensing protein 2-like [Cucumis sativus]

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/592 (81%), Positives = 533/592 (90%), Gaps = 10/592 (1%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
           M GA LVA+AA++GNFLQGWDNATIAGA+VYIKKD+ L ++VEGL+VA+SLIGAT ITTC
Sbjct: 1   MKGAVLVALAASVGNFLQGWDNATIAGAMVYIKKDMVLNSSVEGLIVAISLIGATIITTC 60

Query: 61  SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           SGP+SDW+GRRPMLILSS+LY +SGL+MLWSPNV VLCIARLLDGFG+GLAVTLVP+YIS
Sbjct: 61  SGPVSDWVGRRPMLILSSLLYILSGLIMLWSPNVLVLCIARLLDGFGIGLAVTLVPVYIS 120

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           ETAPSEIRG LNTLPQFTGSGGMF++YCMVF MSL  S SWRLMLGVLSIP++LYF   V
Sbjct: 121 ETAPSEIRGLLNTLPQFTGSGGMFISYCMVFYMSLSVSTSWRLMLGVLSIPSVLYFILTV 180

Query: 181 FFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
           FFLPESPRWLVSKGKMLEAK+VLQRLRG EDVSGEMALLVEGLGIGGETSIEEYIIGP +
Sbjct: 181 FFLPESPRWLVSKGKMLEAKKVLQRLRGIEDVSGEMALLVEGLGIGGETSIEEYIIGPAE 240

Query: 241 ELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTL 300
           E+ DG+   D+KDKIRLYGP EGLSWVAKPVTGQSSL L SRQGSL N+S+ LMDPLVTL
Sbjct: 241 EI-DGDI-ADQKDKIRLYGPGEGLSWVAKPVTGQSSLVLASRQGSLINRSM-LMDPLVTL 297

Query: 301 FGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSD 360
           FGSVHEKLPESGSM   +FP FGSMFSTAE HVK++ WDEES  + G+D+AS+  G DSD
Sbjct: 298 FGSVHEKLPESGSM---IFPNFGSMFSTAEPHVKNEQWDEES--QRGDDYASEAGGMDSD 352

Query: 361 DNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKW 420
           DNLHSPLISRQTTSM+KD+  PPSHGSI S+RRHSSLMQG+ E VG+TGIGGGWQLAWKW
Sbjct: 353 DNLHSPLISRQTTSMDKDIVPPPSHGSIFSVRRHSSLMQGNIETVGNTGIGGGWQLAWKW 412

Query: 421 TEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYS 480
           +E+ GEDG KEGGFKRIYLH E +PGSRRGS++S+PG DV  +GE IQAAALVSQPAL S
Sbjct: 413 SEK-GEDG-KEGGFKRIYLHPEDIPGSRRGSILSLPGEDVHADGEVIQAAALVSQPALVS 470

Query: 481 KELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYT 540
           KEL DQHPVGPAMVHPSET SK P W+ALLE GVK AL+VG+GIQILQQFSGINGVLYYT
Sbjct: 471 KELKDQHPVGPAMVHPSETVSKTPIWSALLEPGVKHALIVGIGIQILQQFSGINGVLYYT 530

Query: 541 PQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           PQILE+AGVEVLLSN+GI SESASFLISAFTTFLMLPCIGVAM+LMDV+GRR
Sbjct: 531 PQILEEAGVEVLLSNMGIGSESASFLISAFTTFLMLPCIGVAMRLMDVSGRR 582

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438426|ref|XP_002276373.1| PREDICTED: monosaccharide-sensing protein 2 [Vitis vinifera] gi|310877836|gb|ADP37149.1| putative tonoplastic monosaccharide transporter [Vitis vinifera]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/595 (76%), Positives = 517/595 (86%), Gaps = 4/595 (0%)

Query: 1   MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGT--TVEGLVVAMSLIGATAIT 58
           MNGA LVAI A IGN LQGWDNATIAGA++YIK++ +L T  T+EGL+VAMSLIGATAIT
Sbjct: 1   MNGAVLVAITAAIGNLLQGWDNATIAGAVLYIKREFHLQTEPTIEGLIVAMSLIGATAIT 60

Query: 59  TCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLY 118
           T SGP++DWLGRRPMLI+SSVLYF+SGLVMLWSPNVYVL +ARLLDGFG+GLAVTLVP+Y
Sbjct: 61  TFSGPVADWLGRRPMLIISSVLYFLSGLVMLWSPNVYVLLLARLLDGFGIGLAVTLVPVY 120

Query: 119 ISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAF 178
           ISETAPSEIRG LNTLPQFTGSGGMFL+YCMVF MSL+ SP WRLMLGVLSIP+LLYFA 
Sbjct: 121 ISETAPSEIRGLLNTLPQFTGSGGMFLSYCMVFWMSLMDSPKWRLMLGVLSIPSLLYFAL 180

Query: 179 AVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGP 238
            VF+LPESPRWLVSKG+M EAKQVLQRLRGREDV+GEMALLVEGLG+GG+TSIEEY+IGP
Sbjct: 181 TVFYLPESPRWLVSKGRMAEAKQVLQRLRGREDVAGEMALLVEGLGVGGDTSIEEYMIGP 240

Query: 239 GDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLV 298
            DELAD +E + EKD+I+LYGPE+GLSWVA+PVTGQS+L LVSR GS+ANQSVPLMDPLV
Sbjct: 241 ADELADNQEQSTEKDQIKLYGPEQGLSWVARPVTGQSTLGLVSRHGSMANQSVPLMDPLV 300

Query: 299 TLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGAD 358
           TLFGSVHEK PE+GSMRS LFP  GSMFS AE+  K++ WDEESLQR+GED+ SD  G +
Sbjct: 301 TLFGSVHEKFPETGSMRSMLFPNMGSMFSVAEYQDKNEQWDEESLQRDGEDYGSD-GGGE 359

Query: 359 SDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQG-SGEAVGSTGIGGGWQLA 417
           SDDNL SPL+SRQT+S EKDM  P ++GSIL+MRRHSSLMQG +GEA  S GIGGGWQLA
Sbjct: 360 SDDNLRSPLLSRQTSSTEKDMVPPAANGSILNMRRHSSLMQGAAGEAGSSMGIGGGWQLA 419

Query: 418 WKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPA 477
           WKW+E+ G+DG KE   +RIYLH E  PGSRRGS+ S+P  D PEEG ++QA+ALVSQ  
Sbjct: 420 WKWSEKRGKDGNKERELQRIYLHPEDAPGSRRGSVASLPVADAPEEGGFVQASALVSQSM 479

Query: 478 LYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVL 537
           LYSK   D+HP+GPAMV P+E+ + GPSW  L E G+KRAL VGVGIQILQQFSGINGVL
Sbjct: 480 LYSKGGKDKHPIGPAMVQPAESVAVGPSWQDLFEPGIKRALFVGVGIQILQQFSGINGVL 539

Query: 538 YYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           YYTPQILEQAGV VLLSN+GI SESAS LIS  TT LMLP IG AM+LMDV+GRR
Sbjct: 540 YYTPQILEQAGVGVLLSNMGIGSESASLLISGLTTLLMLPSIGFAMRLMDVSGRR 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
TAIR|locus:2030377	734	TMT1 "tonoplast monosaccharide	0.967	0.780	0.645	4.3e-189
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.373	0.381	0.356	1.4e-38
TAIR|locus:2130689	582	INT4 "inositol transporter 4"	0.380	0.386	0.344	3.2e-38
UNIPROTKB|E1BML6	648	SLC2A13 "Uncharacterized prote	0.351	0.320	0.341	4.5e-38
UNIPROTKB|Q96QE2	648	SLC2A13 "Proton myo-inositol c	0.351	0.320	0.336	7.8e-38
UNIPROTKB|E9PE47	357	SLC2A13 "Proton myo-inositol c	0.351	0.582	0.336	1.3e-37
UNIPROTKB|F1PGX9	652	SLC2A13 "Uncharacterized prote	0.351	0.319	0.336	4e-37
MGI|MGI:2146030	637	Slc2a13 "solute carrier family	0.351	0.326	0.344	1e-36
RGD|621814	637	Slc2a13 "solute carrier family	0.351	0.326	0.344	1.3e-36
TAIR|locus:2058774	580	INT3 "nositol transporter 3" [	0.380	0.387	0.361	3.8e-36

TAIR|locus:2030377 TMT1 "tonoplast monosaccharide transporter1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
 Identities = 390/604 (64%), Positives = 457/604 (75%)

Query:     1 MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTC 60
             M GA LVA+AATIGNFLQGWDNATIAGA+VYI KDLNL T+V+GLVVAMSLIGAT ITTC
Sbjct:     1 MKGATLVALAATIGNFLQGWDNATIAGAMVYINKDLNLPTSVQGLVVAMSLIGATVITTC 60

Query:    61 SGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
             SGPISDWLGRRPMLILSSV+YFV GL+MLWSPNVYVLC ARLL+GFG GLAVTLVP+YIS
Sbjct:    61 SGPISDWLGRRPMLILSSVMYFVCGLIMLWSPNVYVLCFARLLNGFGAGLAVTLVPVYIS 120

Query:   121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXX 180
             ETAP EIRG+LNTLPQF GSGGMFL+YCMVF MSL  SPSWR MLGVLSIP         
Sbjct:   121 ETAPPEIRGQLNTLPQFLGSGGMFLSYCMVFTMSLSDSPSWRAMLGVLSIPSLLYLFLTV 180

Query:   181 XXXPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPGD 240
                PESPRWLVSKG+M EAK+VLQ+L GREDV+ EMALLVEGL IGGE ++E+ ++   D
Sbjct:   181 FYLPESPRWLVSKGRMDEAKRVLQQLCGREDVTDEMALLVEGLDIGGEKTMEDLLVTLED 240

Query:   241 ELADGE-EPTDEKDKIRLYGPEEGLSWVAKPVTGQ-SSLALVSRQGSLANQSVPLMDPLV 298
                D   E  DE  ++RLYG  E  S++A+PV  Q SSL L SR GSLANQS+ L DPLV
Sbjct:   241 HEGDDTLETVDEDGQMRLYGTHENQSYLARPVPEQNSSLGLRSRHGSLANQSMILKDPLV 300

Query:   299 TLFGSVHEKLPESG-SMRSTLFPTFGSMFSTAEH--HVKHDHWD---EESLQREGEDHAS 352
              LFGS+HEK+PE+G + RS +FP FGSMFST     H K  HW+   E    ++ +D+A+
Sbjct:   301 NLFGSLHEKMPEAGGNTRSGIFPHFGSMFSTTADAPHGKPAHWEKDIESHYNKDNDDYAT 360

Query:   353 DIAGADSDDN---LHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTG 409
             D    D DD+   L SPL+SRQTTSM+KDM   P+ GS LSMRRHS+LMQG+GE+  S G
Sbjct:   361 DDGAGDDDDSDNDLRSPLMSRQTTSMDKDMIPHPTSGSTLSMRRHSTLMQGNGES--SMG 418

Query:   410 IGGGWQLAWKWTXXXXXXXXXXXXXXRIYLHQEGVPGSRRGSLVSVPGYDVPEEG-EYIQ 468
             IGGGW + +++               R YL ++G   SRRGS++S+PG   P+ G  YI 
Sbjct:   419 IGGGWHMGYRYENDEYK---------RYYLKEDGAE-SRRGSIISIPGG--PDGGGSYIH 466

Query:   469 AAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQ 528
             A+ALVS+  L  K +   H  G AMV P + A+ GP W+ALLE GVKRAL+VGVGIQILQ
Sbjct:   467 ASALVSRSVLGPKSV---H--GSAMVPPEKIAASGPLWSALLEPGVKRALVVGVGIQILQ 521

Query:   529 QFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDV 588
             QFSGINGVLYYTPQILE+AGV++LLS+LG+SS SASFLIS  TT LMLP I VAM+LMDV
Sbjct:   522 QFSGINGVLYYTPQILERAGVDILLSSLGLSSISASFLISGLTTLLMLPAIVVAMRLMDV 581

Query:   589 AGRR 592
             +GRR
Sbjct:   582 SGRR 585

GO:0005215 "transporter activity" evidence=IEA

GO:0005337 "nucleoside transmembrane transporter activity" evidence=ISS

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
 Identities = 82/230 (35%), Positives = 130/230 (56%)

Query:     7 VAIAATIGNFLQGWDNATIAGAIVYIKKD---LNLGTTVEGLVVAMSLIGATAITTCSGP 63
             +A +A IG  L G+D   I+GA++YI+ D   ++  T ++ ++V+M++ GA       G 
Sbjct:    31 LAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGW 90

Query:    64 ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
              +D LGRR  ++++  L+ +  ++M  +PN  +L + R+  G GVG+A    PLYISE +
Sbjct:    91 ANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEAS 150

Query:   124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXX 183
             P++IRG L +   F  +GG FL+Y +    + +   +WR MLG+  IP            
Sbjct:   151 PAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTG-TWRWMLGIAGIPALLQFVLMFTL- 208

Query:   184 PESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEE 233
             PESPRWL  KG+  EAK +L+R+   EDV  E+  L + +    ET I E
Sbjct:   209 PESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSV----ETEILE 254

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2130689 INT4 "inositol transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
 Identities = 81/235 (34%), Positives = 137/235 (58%)

Query:     7 VAIAATIGNFLQGWDNATIAGAIVYIKKD---LNLGTTVEGLVVAMSLIGATAITTCSGP 63
             +A++A IG  L G+D   I+GA+++IK+D   ++  T ++  +V+M++ GA       G 
Sbjct:    30 LALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGW 89

Query:    64 ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
             I+D  GRR  ++++ VL+ +  +VM ++P  +V+ + R+  GFGVG+A    PLYISE +
Sbjct:    90 INDKFGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMASMTSPLYISEAS 149

Query:   124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGVLSIPXXXXXXXXXXX 182
             P+ IRG L +      +GG F +Y  +  ++ + +P +WR MLGV  +P           
Sbjct:   150 PARIRGALVSTNGLLITGGQFFSY--LINLAFVHTPGTWRWMLGVAGVPAIVQFVLMLSL 207

Query:   183 XPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIG 237
              PESPRWL  K ++ E++ +L+R+   ++V  EM  L   L +  E + +E IIG
Sbjct:   208 -PESPRWLYRKDRIAESRAILERIYPADEVEAEMEALK--LSVEAEKA-DEAIIG 258

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1BML6 SLC2A13 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 341 (125.1 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 72/211 (34%), Positives = 121/211 (57%)

Query:     6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-PI 64
             +VA+ + +G FL G+D   ++GA++ +K+ L+L    + L+V+ S +GA A++  +G  +
Sbjct:    83 VVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDAMWQELLVS-STVGAAAVSALAGGAL 141

Query:    65 SDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAP 124
             +   GRR  ++L+S L+     V+  + N   L   RL+ G G+G+A   VP+YI+E +P
Sbjct:   142 NGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 201

Query:   125 SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXXP 184
               +RGRL T+     +GG F A  +    S L    WR MLG+ +IP            P
Sbjct:   202 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFL-P 260

Query:   185 ESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             ESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct:   261 ESPRWLIQKGQTQKARRILSQMRGNQTIDEE 291

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q96QE2 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 340 (124.7 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
 Identities = 71/211 (33%), Positives = 121/211 (57%)

Query:     6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-PI 64
             +VA+ + +G FL G+D   ++GA++ +K+ L+L    + L+V+ S +GA A++  +G  +
Sbjct:    83 VVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVS-STVGAAAVSALAGGAL 141

Query:    65 SDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAP 124
             +   GRR  ++L+S L+     V+  + N   L   RL+ G G+G+A   VP+YI+E +P
Sbjct:   142 NGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 201

Query:   125 SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXXP 184
               +RGRL T+     +GG F A  +    S L    WR MLG+ ++P            P
Sbjct:   202 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFL-P 260

Query:   185 ESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             ESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct:   261 ESPRWLIQKGQTQKARRILSQMRGNQTIDEE 291

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|E9PE47 SLC2A13 "Proton myo-inositol cotransporter" [Homo sapiens (taxid:9606)]

 Score = 340 (124.7 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
 Identities = 71/211 (33%), Positives = 121/211 (57%)

Query:     6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-PI 64
             +VA+ + +G FL G+D   ++GA++ +K+ L+L    + L+V+ S +GA A++  +G  +
Sbjct:    83 VVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVS-STVGAAAVSALAGGAL 141

Query:    65 SDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAP 124
             +   GRR  ++L+S L+     V+  + N   L   RL+ G G+G+A   VP+YI+E +P
Sbjct:   142 NGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSP 201

Query:   125 SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXXP 184
               +RGRL T+     +GG F A  +    S L    WR MLG+ ++P            P
Sbjct:   202 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFL-P 260

Query:   185 ESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             ESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct:   261 ESPRWLIQKGQTQKARRILSQMRGNQTIDEE 291

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PGX9 SLC2A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 71/211 (33%), Positives = 120/211 (56%)

Query:     6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-PI 64
             + A+ + +G FL G+D   ++GA++ +K+ L+L    + L+V+ S +GA A++  +G  +
Sbjct:    87 VAAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVS-STVGAAAVSALAGGAL 145

Query:    65 SDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAP 124
             +   GRR  ++L+S L+     V+  + N   L   RL+ G G+G+A   VP+YI+E +P
Sbjct:   146 NGVFGRRAAILLASALFAAGSAVLAAAGNRETLLAGRLVVGLGIGIASMTVPVYIAEVSP 205

Query:   125 SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXXP 184
               +RGRL T+     +GG F A  +    S L    WR MLG+ +IP            P
Sbjct:   206 PNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFL-P 264

Query:   185 ESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             ESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct:   265 ESPRWLIQKGQTQKARRILSQMRGNQTIDEE 295

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

MGI|MGI:2146030 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Mus musculus (taxid:10090)]

 Score = 333 (122.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 73/212 (34%), Positives = 119/212 (56%)

Query:     5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-P 63
             A  A +A +G FL G+D   ++GA++ +++ + LG   + L+V+   +GA A+   +G  
Sbjct:    72 AAAAFSA-LGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVS-GAVGAAAVAALAGGA 129

Query:    64 ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
             ++  LGRR  ++L+S L  V   V+  + N   L   RL+ G G+G+A   VP+YI+E +
Sbjct:   130 LNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVS 189

Query:   124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXX 183
             P  +RGRL T+     +GG F A  +    S L    WR MLG+ +IP            
Sbjct:   190 PPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFL- 248

Query:   184 PESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             PESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct:   249 PESPRWLIQKGQTQKARRILSQMRGNQTIDEE 280

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|621814 Slc2a13 "solute carrier family 2 (facilitated glucose transporter), member 13" [Rattus norvegicus (taxid:10116)]

 Score = 333 (122.3 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 73/212 (34%), Positives = 119/212 (56%)

Query:     5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-P 63
             A  A +A +G FL G+D   ++GA++ +++ + LG   + L+V+   +GA A+   +G  
Sbjct:    72 AAAAFSA-LGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVS-GAVGAAAVAALAGGA 129

Query:    64 ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
             ++  LGRR  ++L+S L  V   V+  + N   L   RL+ G G+G+A   VP+YI+E +
Sbjct:   130 LNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVS 189

Query:   124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPXXXXXXXXXXXX 183
             P  +RGRL T+     +GG F A  +    S L    WR MLG+ +IP            
Sbjct:   190 PPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFL- 248

Query:   184 PESPRWLVSKGKMLEAKQVLQRLRGREDVSGE 215
             PESPRWL+ KG+  +A+++L ++RG + +  E
Sbjct:   249 PESPRWLIQKGQTQKARRILSQMRGNQTIDEE 280

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

TAIR|locus:2058774 INT3 "nositol transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
 Identities = 85/235 (36%), Positives = 138/235 (58%)

Query:     7 VAIAATIGNFLQGWDNATIAGAIVYIKKD---LNLGTTVEGLVVAMSLIGATAITTCSGP 63
             +A++A IG  L G++   IAGA++YIK++   ++  T ++ ++V+M++ GA       G 
Sbjct:    29 LALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGW 88

Query:    64 ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
              +D  GRR  ++++ VL+ +  LVM+ +   +V+ + RLL GFGVG+A    PLYISE +
Sbjct:    89 YNDKFGRRMSVLIADVLFLLGALVMVIAHAPWVIILGRLLVGFGVGMASMTSPLYISEMS 148

Query:   124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGVLSIPXXXXXXXXXXX 182
             P+ IRG L +      +GG FL+Y  +  ++ + +P +WR MLGV +IP           
Sbjct:   149 PARIRGALVSTNGLLITGGQFLSY--LINLAFVHTPGTWRWMLGVSAIPAIIQFCLMLTL 206

Query:   183 XPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIG 237
              PESPRWL    +  E++ +L+R+   E V  E+A L E   +  ET+ E+ IIG
Sbjct:   207 -PESPRWLYRNDRKAESRDILERIYPAEMVEAEIAALKES--VRAETADED-IIG 257

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LPQ8	MSSP2_ARATH	No assigned EC number	0.7164	0.9763	0.7928	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00020052 SubName- Full=Putative uncharacterized protein; (738 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	592
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-51
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-45
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-37
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-27
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-24
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-19
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-14
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	3e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-11
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-11
COG0477	338	COG0477, ProP, Permeases of the major facilitator	7e-10
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-09
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	7e-09
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-08
TIGR00710	385	TIGR00710, efflux_Bcr_CflA, drug resistance transp	1e-08
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	2e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-07
TIGR00893	399	TIGR00893, 2A0114, D-galactonate transporter	1e-05
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-05
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	2e-05
COG2211	467	COG2211, MelB, Na+/melibiose symporter and related	3e-05
PRK15403	413	PRK15403, PRK15403, multidrug efflux system protei	3e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	7e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	7e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-04
PRK15402	406	PRK15402, PRK15402, multidrug efflux system transl	2e-04
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	6e-04
PRK11652	394	PRK11652, emrD, multidrug resistance protein D; Pr	0.001
PRK05122	399	PRK05122, PRK05122, major facilitator superfamily	0.002

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  182 bits (465), Expect = 2e-51
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 15/225 (6%)

Query: 7   VAIAATIGNFLQGWDNATIAGAIVYIK-----------KDLNLGTTVEGLVVAMSLIGAT 55
           +A+ A +G FL G+D   I   +  IK                 T + GL+V++  +G  
Sbjct: 1   LALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCL 60

Query: 56  AITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP--NVYVLCIARLLDGFGVGLAVT 113
             +  +G + D  GR+  L++ +VL+ +  L+  ++   + Y+L + R++ G GVG    
Sbjct: 61  IGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120

Query: 114 LVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL-LASPSWRLMLGVLSIPA 172
           LVP+YISE AP ++RG L +L Q   + G+ +A  +  G++    S  WR+ LG+  +PA
Sbjct: 121 LVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPA 180

Query: 173 LLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMA 217
           +L     + FLPESPRWLV KGK+ EA+ VL +LRG  DV  E+ 
Sbjct: 181 ILLLIG-LLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQ 224

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  166 bits (422), Expect = 4e-45
 Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 13/221 (5%)

Query: 4   AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVE--------GLVVAMSLIGAT 55
            AL+++ A IG  + G+D   I GA+     +    +           GLVV++ L+G  
Sbjct: 26  VALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGF 85

Query: 56  AITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVY---VLCIARLLDGFGVGLAV 112
                +G +SD  GR+  L++ ++L+ +  ++M  +       +L + R+L G GVG+A 
Sbjct: 86  IGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIAS 145

Query: 113 TLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGVLSIP 171
            LVP+Y+SE AP  +RG L +L Q   + G+ +AY    G   L +   WR+ LG+  IP
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205

Query: 172 ALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDV 212
           A L F   +FFLPESPRWLV KG++ EA++ L RLRG    
Sbjct: 206 AGLLFL-GLFFLPESPRWLVGKGRVEEARKSLARLRGTSGE 245

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  144 bits (365), Expect = 2e-37
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 27/250 (10%)

Query: 7   VAIAATIGNFLQGWDNATIAGAIVYIKK--------DLNLGTTVEGLVVAMSLIGATAIT 58
           + + AT+G  L G+D A I+G +  +            +   ++ G  VA +LIG     
Sbjct: 13  ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGG 72

Query: 59  TCSGPISDWLGRRPMLILSSVLYFVSGLVMLW---------SPN---VYVLCIARLLDGF 106
              G  S+  GRR  L +++VL+F+S L   W           N   V    I R++ G 
Sbjct: 73  ALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGI 132

Query: 107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL------LASPS 160
           GVGLA  L P+YI+E AP+ IRG+L +  QF    G  + Y + + ++       L +  
Sbjct: 133 GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDG 192

Query: 161 WRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLV 220
           WR M    +IPALL F   ++F+PE+PR+L+S+GK  +A+ +L+++ G    +  +  + 
Sbjct: 193 WRYMFASEAIPALL-FLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIK 251

Query: 221 EGLGIGGETS 230
             L  G +T 
Sbjct: 252 HSLDHGRKTG 261

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score =  112 bits (282), Expect = 4e-27
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 2/176 (1%)

Query: 9   IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL 68
           +   +G FL G D   ++ A+  + +DL L  +  GL+V+   +G    +  +G +SD  
Sbjct: 2   LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF 61

Query: 69  GRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIR 128
           GRR +L+L  +L+ +  L++ ++ ++++L + R L G G G         I+E  P + R
Sbjct: 62  GRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKER 121

Query: 129 GRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLP 184
           GR   L       G  L    + G  L  S  WR +  +L+I  LL     +F L 
Sbjct: 122 GRALGLFSAGFGLGALLGP--LLGGLLAESLGWRWLFLILAILGLLLALLLLFLLR 175

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  106 bits (267), Expect = 2e-24
 Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 16/160 (10%)

Query: 51  LIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGV-G 109
           L+G+       G +SD  GR+ +L+LS+++  VSG++  +SPN  V  + RLL G G+ G
Sbjct: 141 LLGSFVF----GYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGG 196

Query: 110 LAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA--SPSWRLMLGV 167
           + V  V L   E  P + R  + TL Q   S G+ L       + L+A   P WR +   
Sbjct: 197 IWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVL-------LPLVAYFIPDWRWLQLA 248

Query: 168 LSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLR 207
           +S+P  L F    +F+PESPRWL+S+G++ EA ++LQR+ 
Sbjct: 249 VSLPTFL-FFLLSWFVPESPRWLISQGRIEEALKILQRIA 287

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 90.2 bits (224), Expect = 1e-19
 Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 3/192 (1%)

Query: 13  IGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRR 71
           +  FL G   + +  A+  Y+ +DL +  T  GL++    +G       +G +SD  GRR
Sbjct: 3   LAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR 62

Query: 72  PMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRL 131
            +L++  +L+ +  L++L++ ++++L + R+L G G G         I++  P E RGR 
Sbjct: 63  RVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRA 122

Query: 132 NTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLV 191
             L       G  L    + G  L +   WR    +L+I ALL    A   LP  P    
Sbjct: 123 LGLLSAGFGLGAALG--PLLGGLLASLFGWRAAFLILAILALLAAVLAALLLPRPPPESK 180

Query: 192 SKGKMLEAKQVL 203
                 EA   L
Sbjct: 181 RPKPAEEAPAPL 192

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 74.7 bits (184), Expect = 2e-14
 Identities = 56/197 (28%), Positives = 83/197 (42%), Gaps = 2/197 (1%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPIS 65
              I + +   + G+D A +  A   I  +  L     G + +  LIG        GP++
Sbjct: 17  RAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLA 76

Query: 66  DWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPS 125
           D +GRR +L+ S +L+ V  L+   + NV  L I R L G G+G  +  +   +SE AP 
Sbjct: 77  DRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK 136

Query: 126 EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE 185
             RG    L       G  +         L+    WR +  V  I  LL     + FLPE
Sbjct: 137 RFRGTAVGLMFCGYPIGAAVG--GFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPE 194

Query: 186 SPRWLVSKGKMLEAKQV 202
           S  +LVSK      + V
Sbjct: 195 SIDFLVSKRPETVRRIV 211

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 2/143 (1%)

Query: 44  GLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLL 103
           GL++A   +G    +  SG ++D  GR+P+L++   ++ +S  +   S N+ VL IAR L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL 163
            GFG   A+      I++  P E RG    L     + G  L      G  L     WR 
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLG--PPLGGVLAQFLGWRA 118

Query: 164 MLGVLSIPALLYFAFAVFFLPES 186
               L+I AL  F    F LPE+
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 4/176 (2%)

Query: 9   IAATIGNFLQGWDNATIAG-AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW 67
           +   +  FL  +    +     +Y+++ L L     GL++++  +G        G +SD 
Sbjct: 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDR 237

Query: 68  LGRRP-MLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSE 126
           LGRR  +L++  +L  +  L++  +P++ +L +A LL GFG+G A   +    SE AP E
Sbjct: 238 LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPE 297

Query: 127 IRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFF 182
            RG  + L    GS G  L    +    LL +  +  +  +L+  ALL     +  
Sbjct: 298 ARGTASGLFNTFGSLGGALG--PLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 66.5 bits (162), Expect = 2e-11
 Identities = 56/189 (29%), Positives = 90/189 (47%), Gaps = 20/189 (10%)

Query: 33  KKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILS----SVLYFVSGLVM 88
           +KDL +  + +G++  +  +G        G ++D LGR+  L++         F S  V 
Sbjct: 194 EKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQ 253

Query: 89  LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGR-LNTLPQFTGSGGMFLA- 146
            +    ++ C  RLL GFG+G A+ +V  Y +E    E RG  L+ L  F   GG++ A 
Sbjct: 254 GYG--FFLFC--RLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA 309

Query: 147 --------YCMVFGM-SLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKML 197
                   Y   F M S     SWR+ + V + P +     A+ F+PESPR+ +  GK  
Sbjct: 310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG-ALTFMPESPRFFLENGKHD 368

Query: 198 EAKQVLQRL 206
           EA  +L+ +
Sbjct: 369 EAWMILKLI 377

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 60.5 bits (145), Expect = 7e-10
 Identities = 47/237 (19%), Positives = 91/237 (38%), Gaps = 6/237 (2%)

Query: 9   IAATIGNFLQGWDNATIAGAIVYIKKDLNL--GTTVEGLVVAMSLIGATAITTCSGPISD 66
           +A  +   L G D   ++ A+  +   L+L  G  + GL+++   +G    +  +GP+ D
Sbjct: 5   LALALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD 64

Query: 67  WLGRRPMLILSSVLYFVSGLVMLWSPN--VYVLCIARLLDGFGVGLAVTLVPLYISETAP 124
             GRR +LI+  +L+ +  L++  +PN  + +L I RLL G G G  + +    +SE  P
Sbjct: 65  RYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFP 124

Query: 125 SE-IRGRLNTLPQFTG-SGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFF 182
               RG    L      + G+ L   +   +       WR    + ++  LL     +  
Sbjct: 125 EATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLL 184

Query: 183 LPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIGPG 239
                   +     L   ++ + L     +     +L+               +  G
Sbjct: 185 DLLLAAPRLPLAVGLALIELGKLLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLG 241

Length = 338

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 20/132 (15%)

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVM----------LWSPNVYVLCIARLLDGFGVGLA 111
           G   D +GR+  L+++ ++  +  L++          +W+P   +L +ARL+ GF +G  
Sbjct: 56  GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAP--ILLLLARLIQGFSLGGE 113

Query: 112 VTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS------WRL-- 163
                LY++E AP   RG   +  Q     G+ LA   V  +S L          WR+  
Sbjct: 114 WGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPF 173

Query: 164 MLGVLSIPALLY 175
           ++  + +   LY
Sbjct: 174 LVSAVLVLIGLY 185

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 58.2 bits (141), Expect = 7e-09
 Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 33/196 (16%)

Query: 9   IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITT-----CSGP 63
            AA +G  L G+D   I   +  ++ +  L       V A SLI A  I+        G 
Sbjct: 23  SAAWLGYLLDGFDFVLITLVLTEVQGEFGLT-----TVQAASLISAAFISRWFGGLLLGA 77

Query: 64  ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGV----GLAVTLVPLYI 119
           + D  GRR  +++S VL+ V  L   ++P  + L IARL+ G G+    G + T    Y+
Sbjct: 78  MGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSAT----YV 133

Query: 120 SETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLM--LGVLSIPALLYF 176
            E+ P  +R + +    F  SG    A       SL+     WR +  +G+L I      
Sbjct: 134 IESWPKHLRNKASG---FLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI------ 184

Query: 177 AFAVFF---LPESPRW 189
            FA++    LPE+  W
Sbjct: 185 IFALWLRKNLPEAEDW 200

Length = 496

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 12/97 (12%)

Query: 498 ETASKGPSWAALLEAG--VKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSN 555
           E  S  PSW +L  +   ++R L +GV +Q  QQF+GIN ++YY+P I E AGV    + 
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF 322

Query: 556 LGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR 592
           L       S ++ A           VA+ L+D  GRR
Sbjct: 323 LV------SIIVGAVNFAFTF----VAIFLVDRFGRR 349

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 22/135 (16%)

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISE 121
           GP+SD  GRRP+L+L   ++ +S L +  S N+  L + R +  FG      +    + +
Sbjct: 61  GPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRD 120

Query: 122 TAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP----------SWRLMLGVLSIP 171
             P E   R            ++     V  ++   +P          SW  +   LS+ 
Sbjct: 121 IYPGEELSR------------IYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168

Query: 172 ALLYFAFAVFFLPES 186
            +L  A   F LPE+
Sbjct: 169 GILLSALIFFILPET 183

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 46/207 (22%), Positives = 75/207 (36%), Gaps = 16/207 (7%)

Query: 10  AATIGNFLQGWDN-------ATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSG 62
           AA +G  L  +D        A +AG       D           +     GA       G
Sbjct: 16  AAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLI---SAALISRWFGALMF----G 68

Query: 63  PISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISET 122
              D  GRR  ++ S VL+    L   ++P    + IARL+ G G+G        Y+ E+
Sbjct: 69  LWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIES 128

Query: 123 APSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFF 182
            P  +R + + L     + G  +A  +   +  +    WR +  +  +P +    +    
Sbjct: 129 WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL-WLRKN 187

Query: 183 LPESPRWL-VSKGKMLEAKQVLQRLRG 208
           +PE+  W     GK L    V     G
Sbjct: 188 IPEAEDWKEKHAGKALVRTMVDILYGG 214

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 14/81 (17%)

Query: 513 GVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGV-EVLLSNLGISSESASFLISAFT 571
            V++ LL+GV +QI QQ +GIN + YY+P I E  G+ + LL  + +       +++   
Sbjct: 249 TVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVG------VVNFVF 302

Query: 572 TFLMLPCIGVAMKLMDVAGRR 592
           TF       +A+ L+D  GRR
Sbjct: 303 TF-------IAIFLVDRFGRR 316

Length = 449

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 7   VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD 66
             +   +   L G+    +   +   ++ L L   + GL++ ++ +         G +SD
Sbjct: 203 PVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSD 262

Query: 67  WLGRRPMLILSSVLYFVSGLVMLWSP---NVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
            LGRR  L+L+ +L  ++ L +       +   L +A LL GFG GL    +   +S+ A
Sbjct: 263 RLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLA 322

Query: 124 PSEIRGRLNTLPQFTGSGGMFLA 146
           P E RG  + L    GS G  L 
Sbjct: 323 PKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 43/217 (19%), Positives = 86/217 (39%), Gaps = 10/217 (4%)

Query: 11  ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGR 70
            T+ N+L   D A ++ A   +++DL L     G V +    G        G + D  G 
Sbjct: 2   VTVINYL---DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGA 58

Query: 71  RPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGR 130
           R  L +  V++ V   +  ++     L I R+L G         + L ++   P+  R  
Sbjct: 59  RKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERAT 118

Query: 131 LNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL---PES 186
             ++     G GG+     +V    +L   SW+    +  +  +++    + F+   P+ 
Sbjct: 119 AVSIFNSAQGLGGIIGG-PLVGW--ILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQK 175

Query: 187 PRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGL 223
            +WL  + K +    +L   +G+   + +   + E L
Sbjct: 176 AKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELL 212

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 42/212 (19%), Positives = 74/212 (34%), Gaps = 22/212 (10%)

Query: 2   NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCS 61
                + +   +  F Q      I      I + L L  ++   ++   +      T  +
Sbjct: 249 TVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVV--NFVFTFIA 306

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVM---LWSPNV-----YVLCIARLLDGFGVGLAVT 113
             + D  GRRP+L+L +    +  LV+   L           V  +  LL      L   
Sbjct: 307 IFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWG 366

Query: 114 LVP-LYISETAPSEIRGRLNTLPQFTGSGGMFL-AYCMVFGMSLLASPSWRLMLGVLSIP 171
            VP + +SE  P  +R +   +         FL  +        +    + +  G+L   
Sbjct: 367 PVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLL--- 423

Query: 172 ALLYFAFAVFFLPESPRWLVSKGKMLEAKQVL 203
            +L+  F  FF+PE      +KG+ LE    L
Sbjct: 424 -VLFILFVFFFVPE------TKGRTLEEIDEL 448

Length = 449

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGV 108
           GP+SD  GR+P+L+    L+ +  L MLW  +   L + R +   GV
Sbjct: 62  GPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGV 108

Length = 401

>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 25  IAGAIV--YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF 82
           I G+I+  Y+   L        L++  S  G          +    G++ + ++  +L  
Sbjct: 254 IRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA 313

Query: 83  VSGLVMLWSP--NVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
           V  L++ ++P  +V ++ +A ++ G G G+A  L    +++T 
Sbjct: 314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTV 356

Length = 467

>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 41/185 (22%), Positives = 90/185 (48%), Gaps = 9/185 (4%)

Query: 25  IAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS 84
           I   I+ + +D N   ++    V++ L G  A+    GP+SD +GRRP+LI  ++++ ++
Sbjct: 35  IQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA 94

Query: 85  GLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMF 144
               L++ ++    IAR + G  +    T+  + + E A  + +G +  +   T    + 
Sbjct: 95  CAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQE-AFGQTKG-IKLMAIITSI--VL 150

Query: 145 LAYCM--VFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQV 202
           +A  +  + G +L+    W+++  ++++  L+ F   +  +PE+ +          AK V
Sbjct: 151 VAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK---RGAVPFSAKSV 207

Query: 203 LQRLR 207
           L+  R
Sbjct: 208 LRDFR 212

Length = 413

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 11/188 (5%)

Query: 10  AATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG 69
           +A +G    G+D   I   +  IK DL L       +   + IG        G ++D  G
Sbjct: 22  SAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFG 81

Query: 70  RRPMLILSSVLYFV-SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIR 128
           R+P+++ S V Y V +GL  L S  V +L ++R + G G+         Y  E+ P  ++
Sbjct: 82  RKPLMMWSIVAYSVGTGLSGLAS-GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLK 140

Query: 129 GRLNT-LPQFTGSGGMFLAYCMVFGMSLLASPSWR--LMLGVLSIPALLYFAFAVFFLPE 185
            + +  L    G G +  AY M    S   +  WR    +G+L +  ++Y        PE
Sbjct: 141 SKASAFLVSGFGIGNIIAAYFMP---SFAEAYGWRAAFFVGLLPVLLVIYIRARA---PE 194

Query: 186 SPRWLVSK 193
           S  W  +K
Sbjct: 195 SKEWEEAK 202

Length = 426

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 19/124 (15%), Positives = 48/124 (38%), Gaps = 5/124 (4%)

Query: 2   NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCS 61
           N   L+ +   + N L           + Y    L        +++ +  I A       
Sbjct: 221 NRPLLILLLLYLLNALAM--AVRNGLLLYYFTYVLGNAGLF-SVLLLIGTIAAILGAPLW 277

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVMLWSP--NVYVLCIARLLDGFGVGLAVTLVPLYI 119
             ++   G++   +L  +L  +  +++ + P  ++++  +  +L G G+GLA  L    +
Sbjct: 278 PWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAML 337

Query: 120 SETA 123
           ++  
Sbjct: 338 ADVV 341

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 43/189 (22%), Positives = 68/189 (35%), Gaps = 14/189 (7%)

Query: 4   AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGP 63
             L  +A  +  F  G       G +  I  DL +     G ++    +G          
Sbjct: 11  MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLAL 70

Query: 64  ISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA 123
           ++  L RR +L+    L+ VS L+   +P+  VL +AR L G   G+  ++     +   
Sbjct: 71  LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV 130

Query: 124 PSEIRGRLNTLPQFTGSGGMF--LAYCMVFGMSLLASPS----WRLMLGVLSIPALLYFA 177
           P   RGR            +F  L    V G+ L         WR     +++ ALL   
Sbjct: 131 PPGKRGR--------ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALL 182

Query: 178 FAVFFLPES 186
                LP S
Sbjct: 183 LLWKLLPPS 191

Length = 394

>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA; Provisional

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVG 109
           GP+SD +GRRP+++     + ++ L +L + ++    + R L G G+ 
Sbjct: 69  GPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLC 116

Length = 406

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 518 LLVGVGIQILQQFSGINGVLYYTPQILEQAGVE 550
           +++GV + + QQF GIN VLYY P+I +  G  
Sbjct: 272 IVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304

Length = 479

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 44/189 (23%), Positives = 81/189 (42%), Gaps = 20/189 (10%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLG-TTVEGLVVAMSLIGATAITTCSGPI 64
           L+ I   +G F+   D+  +  AI  I  DL    + V+ ++ +  L  A +I     P+
Sbjct: 2   LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISI-----PL 56

Query: 65  SDWL----GRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           + WL    G R + ++S+  + +  L+   +PN+ ++ I R++ GFG G  + L    + 
Sbjct: 57  TGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLL 116

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL----LASPSWRLMLGVLSIPALLYF 176
              P E RGR           G+ +      G +L    + +  WR +  +     ++  
Sbjct: 117 NIYPPEKRGRA------MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVV 170

Query: 177 AFAVFFLPE 185
             A F LP 
Sbjct: 171 VVAFFILPR 179

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 17/50 (34%), Positives = 32/50 (64%)

Query: 62  GPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLA 111
           GP+SD +GRRP++++   ++ +  LV L++ ++ VL  A  + G G G+ 
Sbjct: 64  GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG 113

Length = 394

>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter; Provisional

 Score = 40.6 bits (96), Expect = 0.002
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 30  VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML 89
            Y+   L     + GLV+++  +        +G  +D LG +  ++       +SGL+ L
Sbjct: 40  GYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL 99

Query: 90  ---WSPN-----VYVLCIARLLDGFGVGLAVT 113
                       + +L + RLL G G  LA T
Sbjct: 100 LAGLLAAWPVLSLLLLLLGRLLLGIGESLAGT 131

Length = 399

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	592
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	99.98
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.92
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.91
PRK10642	490	proline/glycine betaine transporter; Provisional	99.88
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.86
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.85
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.85
TIGR00898	505	2A0119 cation transport protein.	99.85
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.83
TIGR00891	405	2A0112 putative sialic acid transporter.	99.82
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.82
PRK12307	426	putative sialic acid transporter; Provisional	99.82
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.81
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.81
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.81
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.8
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.79
PRK09952	438	shikimate transporter; Provisional	99.79
PRK03545	390	putative arabinose transporter; Provisional	99.79
PRK15075	434	citrate-proton symporter; Provisional	99.78
TIGR00893	399	2A0114 d-galactonate transporter.	99.78
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.78
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.77
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.77
TIGR00895	398	2A0115 benzoate transport.	99.77
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.76
PRK10091	382	MFS transport protein AraJ; Provisional	99.76
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.75
PRK11663	434	regulatory protein UhpC; Provisional	99.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.75
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.75
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.75
PRK03893	496	putative sialic acid transporter; Provisional	99.74
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.74
PRK10133	438	L-fucose transporter; Provisional	99.74
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.73
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.73
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.72
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.7
PRK10642	490	proline/glycine betaine transporter; Provisional	99.7
PRK10504	471	putative transporter; Provisional	99.69
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.69
TIGR00900	365	2A0121 H+ Antiporter protein.	99.69
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.69
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.68
PRK03699	394	putative transporter; Provisional	99.68
PLN00028	476	nitrate transmembrane transporter; Provisional	99.68
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.68
PRK11043	401	putative transporter; Provisional	99.68
PRK09705	393	cynX putative cyanate transporter; Provisional	99.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.67
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.67
PRK12382	392	putative transporter; Provisional	99.65
PRK05122	399	major facilitator superfamily transporter; Provisi	99.64
PTZ00207	591	hypothetical protein; Provisional	99.64
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.63
PRK09874	408	drug efflux system protein MdtG; Provisional	99.62
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.62
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.61
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.61
PRK03633	381	putative MFS family transporter protein; Provision	99.61
PRK10054	395	putative transporter; Provisional	99.61
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.6
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.6
TIGR00805	633	oat sodium-independent organic anion transporter.	99.58
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.58
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.55
TIGR00901	356	2A0125 AmpG-related permease.	99.55
KOG2533	495	consensus Permease of the major facilitator superf	99.54
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.53
KOG2532	466	consensus Permease of the major facilitator superf	99.52
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.5
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.5
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.49
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.48
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.46
KOG2615	451	consensus Permease of the major facilitator superf	99.46
PRK11010	491	ampG muropeptide transporter; Validated	99.45
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.45
PRK11902	402	ampG muropeptide transporter; Reviewed	99.44
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.41
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.39
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.35
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.35
PRK15011	393	sugar efflux transporter B; Provisional	99.33
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.33
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.33
PRK09528	420	lacY galactoside permease; Reviewed	99.32
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.32
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.32
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.31
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.29
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.27
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.25
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.25
PRK05122	399	major facilitator superfamily transporter; Provisi	99.25
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.24
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.24
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
PRK12382	392	putative transporter; Provisional	99.2
PRK09874	408	drug efflux system protein MdtG; Provisional	99.17
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.17
PRK09528	420	lacY galactoside permease; Reviewed	99.17
PRK09952	438	shikimate transporter; Provisional	99.16
PRK10489	417	enterobactin exporter EntS; Provisional	99.16
PRK03545	390	putative arabinose transporter; Provisional	99.14
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.13
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.11
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.1
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.1
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.09
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.08
PRK03699	394	putative transporter; Provisional	99.08
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.07
PRK09705	393	cynX putative cyanate transporter; Provisional	99.07
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.06
PRK03633	381	putative MFS family transporter protein; Provision	99.06
TIGR00893	399	2A0114 d-galactonate transporter.	99.05
TIGR00891	405	2A0112 putative sialic acid transporter.	99.05
PRK03893	496	putative sialic acid transporter; Provisional	99.04
PRK15075	434	citrate-proton symporter; Provisional	99.03
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.99
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.97
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.96
PRK11663	434	regulatory protein UhpC; Provisional	98.94
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.94
TIGR00895	398	2A0115 benzoate transport.	98.94
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.94
PRK10504	471	putative transporter; Provisional	98.94
TIGR00898	505	2A0119 cation transport protein.	98.93
PRK12307	426	putative sialic acid transporter; Provisional	98.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.93
PF13347	428	MFS_2: MFS/sugar transport protein	98.92
KOG0569	485	consensus Permease of the major facilitator superf	98.92
TIGR00900	365	2A0121 H+ Antiporter protein.	98.92
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.88
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.87
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.87
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.86
PRK11010	491	ampG muropeptide transporter; Validated	98.86
TIGR00901	356	2A0125 AmpG-related permease.	98.84
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.83
PLN00028	476	nitrate transmembrane transporter; Provisional	98.82
PRK09669	444	putative symporter YagG; Provisional	98.81
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.81
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.8
PRK10054	395	putative transporter; Provisional	98.79
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.79
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.78
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.73
COG0477	338	ProP Permeases of the major facilitator superfamil	98.73
PRK10429	473	melibiose:sodium symporter; Provisional	98.72
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.72
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.7
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.68
PRK09848	448	glucuronide transporter; Provisional	98.68
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.67
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.67
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.67
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.66
PRK10091	382	MFS transport protein AraJ; Provisional	98.66
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.64
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.64
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
KOG2563	480	consensus Permease of the major facilitator superf	98.63
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.59
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.59
PRK11902	402	ampG muropeptide transporter; Reviewed	98.58
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.58
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.57
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.56
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.55
PRK09669	444	putative symporter YagG; Provisional	98.53
KOG0254	513	consensus Predicted transporter (major facilitator	98.53
PRK10429	473	melibiose:sodium symporter; Provisional	98.53
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.51
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.5
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.5
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.48
PRK11462	460	putative transporter; Provisional	98.48
PRK10133	438	L-fucose transporter; Provisional	98.46
PF13347	428	MFS_2: MFS/sugar transport protein	98.45
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.45
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.44
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.43
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.42
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.41
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.41
PRK11043	401	putative transporter; Provisional	98.41
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.35
PRK09848	448	glucuronide transporter; Provisional	98.33
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.3
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.24
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.18
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.15
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.15
COG2211	467	MelB Na+/melibiose symporter and related transport	98.13
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.12
PRK11462	460	putative transporter; Provisional	98.11
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.08
COG2211	467	MelB Na+/melibiose symporter and related transport	98.07
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.07
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.06
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.05
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.04
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.03
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.99
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.97
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.95
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.95
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.94
KOG3762	618	consensus Predicted transporter [General function	97.92
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.89
KOG3626	735	consensus Organic anion transporter [Secondary met	97.8
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.76
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.75
PF12832	77	MFS_1_like: MFS_1 like family	97.72
KOG2532	466	consensus Permease of the major facilitator superf	97.67
KOG2533	495	consensus Permease of the major facilitator superf	97.65
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.63
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.61
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.51
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.5
PTZ00207	591	hypothetical protein; Provisional	97.34
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.34
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.09
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.96
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.42
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.34
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.27
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.23
KOG0637	498	consensus Sucrose transporter and related proteins	96.17
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	96.15
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.13
PRK03612	521	spermidine synthase; Provisional	96.05
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.93
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.71
KOG2615	451	consensus Permease of the major facilitator superf	95.55
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	95.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.86
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.04
KOG2563	480	consensus Permease of the major facilitator superf	93.95
KOG3762	618	consensus Predicted transporter [General function	93.73
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.67
TIGR00805	633	oat sodium-independent organic anion transporter.	90.84
PF12832	77	MFS_1_like: MFS_1 like family	90.34
KOG3810	433	consensus Micronutrient transporters (folate trans	85.71
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.41
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	83.56
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	82.72
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	82.45
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	81.79
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	80.46

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.5e-33  Score=296.20  Aligned_cols=212  Identities=34%  Similarity=0.550  Sum_probs=184.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHcCC--Cc----hHHHHHHHHHHHHHHHHHhhHHhhhhhc
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIK--------KDLNL--GT----TVEGLVVAMSLIGATAITTCSGPISDWL   68 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~--------~~~~~--s~----~~~gli~s~~~lg~~ig~~~~G~l~Dr~   68 (592)
                      +..+.++.++++.+.+||....+++..+.+.        +.++.  +.    ..++.+++++.+|.++|+++.++++||+
T Consensus         8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~   87 (485)
T KOG0569|consen    8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF   87 (485)
T ss_pred             HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4567778888888999999999988766543        33452  22    4578899999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHH
Q 007702           69 GRRPMLILSSVLYFVSGLVMLWS---PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFL  145 (592)
Q Consensus        69 GRK~~li~~~~l~~i~~~~~~~s---~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l  145 (592)
                      |||..++++.++..++.+++.++   +++.+++++|++.|+..|......+.|+.|++|.+.||....+.+++..+|.++
T Consensus        88 GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll  167 (485)
T KOG0569|consen   88 GRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILL  167 (485)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHH
Confidence            99999999999999998888775   789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHh-cCcHHHHHHHHHHHhCCCCchHH
Q 007702          146 AYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVS-KGKMLEAKQVLQRLRGREDVSGE  215 (592)
Q Consensus       146 ~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~-~~~~~ea~~~l~~l~~~~~~~~~  215 (592)
                      +........+.+...|++.+.+..+++++.+ +.++++||||+||.. |++.+||++.++.+++.+|++.+
T Consensus       168 ~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~  237 (485)
T KOG0569|consen  168 GQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE  237 (485)
T ss_pred             HHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH
Confidence            9777766677788899999999999888755 567899999999977 89999999999998877765433

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.98  E-value=1.6e-30  Score=287.54  Aligned_cols=204  Identities=39%  Similarity=0.721  Sum_probs=179.6

Q ss_pred             hhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCC---c----hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHH
Q 007702            3 GAALVAIAATIGNFLQGWD--NATIAGAIVYIKKDLNLG---T----TVEGLVVAMSLIGATAITTCSGPISDWLGRRPM   73 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~--~~~~~~~~~~i~~~~~~s---~----~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~   73 (592)
                      ...+..+.+.++.+..|++  .+..+++...+.+.....   .    .+.+++.+++.+|+.++++++|+++|++|||++
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3466778888899999997  667777777776654321   1    244899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh
Q 007702           74 LILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM  153 (592)
Q Consensus        74 li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~  153 (592)
                      ++++.+++.++++++++++++.+++++|++.|+|.|+...++++|++|++|++.||...++.+....+|.+++++.....
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997666554


Q ss_pred             HhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhC
Q 007702          154 SLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRG  208 (592)
Q Consensus       154 ~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~  208 (592)
                      .... .+||.++++..+++++..+. .+++||||+|+.++|+.+++++.++++++
T Consensus       202 ~~~~-~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g  254 (513)
T KOG0254|consen  202 SKVY-AGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRG  254 (513)
T ss_pred             ccCC-ccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhC
Confidence            3332 58999999999999887666 89999999999999999999999998886

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.93  E-value=4e-29  Score=271.63  Aligned_cols=302  Identities=28%  Similarity=0.448  Sum_probs=224.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCc---------hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIK--KDLNLGT---------TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILS   77 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~--~~~~~s~---------~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~   77 (592)
                      +++.++.+..|||...++...+...  ..+..+.         ...+++.+...+|..+|++++|+++||+|||++++++
T Consensus         3 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~   82 (451)
T PF00083_consen    3 LIASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIIS   82 (451)
T ss_pred             EeeHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccc
Confidence            3456777999999999987776544  2232222         2468899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhc---cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhH
Q 007702           78 SVLYFVSGLVMLWSP---NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS  154 (592)
Q Consensus        78 ~~l~~i~~~~~~~s~---~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~  154 (592)
                      .++.++++++.++++   +++.++++|++.|++.|+..+..++|+.|.+|+++||+..++.+.+..+|.+++..+.....
T Consensus        83 ~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~  162 (451)
T PF00083_consen   83 ALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS  162 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999   99999999999999999999999999999999999999999999999999988866554442


Q ss_pred             hcC-CCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccchhhhH
Q 007702          155 LLA-SPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEE  233 (592)
Q Consensus       155 ~~~-~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~  233 (592)
                      ... ..+||+.+.+..+++++.+ +..+++||||+|+..|+|.+||++.++++++.+..+.+..+..+.           
T Consensus       163 ~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~-----------  230 (451)
T PF00083_consen  163 YYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAE-----------  230 (451)
T ss_pred             ccccccccccccccccccccccc-ccccccccccceecccccccccccccccccccccccccccccccc-----------
Confidence            222 3579999999988887644 556889999999999999999999999987775544443322211           


Q ss_pred             hhhCCCCCCCCCCCCCccccchhhcccc--cceeeeeccccCccccc-----hhhcccccccc-cCcchhhHHHHHhhcc
Q 007702          234 YIIGPGDELADGEEPTDEKDKIRLYGPE--EGLSWVAKPVTGQSSLA-----LVSRQGSLANQ-SVPLMDPLVTLFGSVH  305 (592)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~l~r~~--~~~~~~~~~lsG~~~v~-----~~~~~~~~~~~-~~~~~~~~v~l~gs~~  305 (592)
                          .+...+.+.......+..+.+++.  .+..+.+++++|.+.+.     +....+. .++ ..+....++.+++++.
T Consensus       231 ----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~  305 (451)
T PF00083_consen  231 ----KKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI-SNSFLATLILGLVNFLGTLL  305 (451)
T ss_pred             ----cccccccceeeeecccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence                000000000111122222223333  66888889899976654     1111111 111 2245555677777777


Q ss_pred             c--cCCCCCCccccccCCCCcccc
Q 007702          306 E--KLPESGSMRSTLFPTFGSMFS  327 (592)
Q Consensus       306 ~--~id~~GRr~~~l~~~~gs~~~  327 (592)
                      .  ++||+|||++++++.+.+...
T Consensus       306 ~~~~~~~~GRr~~~i~~~~~~~~~  329 (451)
T PF00083_consen  306 AIFLIDRFGRRKLLIIGLLLMAIC  329 (451)
T ss_pred             cccccccccccccccccccccccc
Confidence            7  999999999999988885443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.92  E-value=1.9e-24  Score=238.70  Aligned_cols=206  Identities=21%  Similarity=0.285  Sum_probs=174.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDL-----NLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILS   77 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~-----~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~   77 (592)
                      ..+.++++++++.+.++||...++.+.+.+..++     +.+..+.+++.+.+.+|.+++++++|+++||+|||++++++
T Consensus        13 ~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~   92 (502)
T TIGR00887        13 QHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGME   92 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            4567788899999999999999999999887753     34456778999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHH
Q 007702           78 SVLYFVSGLVMLWSPN------VYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVF  151 (592)
Q Consensus        78 ~~l~~i~~~~~~~s~~------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~  151 (592)
                      .++++++.++++++++      ++.++++|++.|++.|...+..+.|++|++|++.||+.+++.+.+..+|.++++.+..
T Consensus        93 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        93 LIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888765      7899999999999999999999999999999999999999999999999888866554


Q ss_pred             HhHh---------------------cCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHH-HHHHHHHHHhCC
Q 007702          152 GMSL---------------------LASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKML-EAKQVLQRLRGR  209 (592)
Q Consensus       152 ~~~~---------------------~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~-ea~~~l~~l~~~  209 (592)
                      ....                     ...++||++|.+.++++++. ++.++++||||||+..|+|.+ ++++.++++...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~-~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA-LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH-HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            3211                     11247999998888877764 455788999999999888874 577777777653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=3.7e-23  Score=234.42  Aligned_cols=208  Identities=22%  Similarity=0.286  Sum_probs=185.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      ..+.++++++++.+..+++...++.++|.+.++++++..+.+++.+++.+|.+++++++|+++||+|||+++++++++.+
T Consensus       164 ~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~  243 (742)
T TIGR01299       164 FQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG  243 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            35667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh-------
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL-------  155 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~-------  155 (592)
                      +++++++++++++.++++|++.|++.|+..++.+++++|++|++.||+..++.+.+..+|.++++.+......       
T Consensus       244 i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~  323 (742)
T TIGR01299       244 FFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ  323 (742)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhc
Confidence            9999999999999999999999999999999999999999999999999999999999998888655433221       


Q ss_pred             ----cCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCC
Q 007702          156 ----LASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGRED  211 (592)
Q Consensus       156 ----~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~  211 (592)
                          ....+||+++++.+++.++ .++.++++||||+|+..+++.++|.+.+++++..+.
T Consensus       324 ~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~  382 (742)
T TIGR01299       324 MGSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNM  382 (742)
T ss_pred             cccccccccHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCC
Confidence                1234799999888877665 456678899999999999999999999999987653

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.91  E-value=5.4e-24  Score=233.10  Aligned_cols=206  Identities=35%  Similarity=0.647  Sum_probs=177.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDL--------NLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLIL   76 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~--------~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~   76 (592)
                      ...+++++++.+..+|+...+++..+.+++.|        +.+..+.+++.+++.++.+++++++|+++||+|||+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            56777888899999999999999999999988        7788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh------------ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHH
Q 007702           77 SSVLYFVSGLVMLWS------------PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMF  144 (592)
Q Consensus        77 ~~~l~~i~~~~~~~s------------~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~  144 (592)
                      +.++++++.+.++++            +.++.++++|+++|++.|...+..+.+++|++|+++||+.+++.+.+..+|.+
T Consensus        91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~  170 (479)
T PRK10077         91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL  170 (479)
T ss_pred             HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence            999999988877763            23567889999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHhH------hcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCC
Q 007702          145 LAYCMVFGMS------LLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGRED  211 (592)
Q Consensus       145 l~~~~~~~~~------~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~  211 (592)
                      ++++......      .....+||++|++.+++.++.. +..+++||+|+|+..+++.+++++.++++.+.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~  242 (479)
T PRK10077        171 VVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTL  242 (479)
T ss_pred             HHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChh
Confidence            8865543322      1245699999998888777754 4567899999999888888888888887765543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.88  E-value=1.4e-21  Score=215.16  Aligned_cols=187  Identities=19%  Similarity=0.264  Sum_probs=155.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchH-HHH-----HHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTV-EGL-----VVAMSLIGATAITTCSGPISDWLGRRPMLILSSV   79 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~-~gl-----i~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~   79 (592)
                      ..++.+++++++.+||...++...|.+.++|+.+.+. ..+     +.++.+++..+|+++.|+++||+|||++++++.+
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   95 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIV   95 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            4566778899999999999999999999999754321 122     2477889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccHHH--------HHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHH
Q 007702           80 LYFVSGLVMLWSPNVYV--------LCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVF  151 (592)
Q Consensus        80 l~~i~~~~~~~s~~~~~--------ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~  151 (592)
                      +++++++++++++++..        ++++|+++|++.|+.++....+++|++|+++||+..++.+.+..+|..++..+..
T Consensus        96 l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~  175 (490)
T PRK10642         96 IMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVV  175 (490)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864        8899999999999999999999999999999999999999888888887754432


Q ss_pred             HhH--h----cCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhc
Q 007702          152 GMS--L----LASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSK  193 (592)
Q Consensus       152 ~~~--~----~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~  193 (592)
                      ...  .    ....+||++|++.+++.++ .++..+.+||||+|...+
T Consensus       176 ~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~  222 (490)
T PRK10642        176 LISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHV  222 (490)
T ss_pred             HHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHH
Confidence            221  1    2357999999887765554 444567899999986543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.86  E-value=2.7e-20  Score=193.99  Aligned_cols=228  Identities=23%  Similarity=0.260  Sum_probs=195.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      ++.+..++.+.++.|..+....++.+.+|.+.+++|++....|+.++.|.++..+++++...+.||+.||+.++....++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF   88 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF   88 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            35577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCch
Q 007702           82 FVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSW  161 (592)
Q Consensus        82 ~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~W  161 (592)
                      +++++++++++||+.++++|++.|++.|.+++....+.+++.|+++|++++++...+.++..+++  ..++..+.+..||
T Consensus        89 i~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G--vPLGt~ig~~~GW  166 (394)
T COG2814          89 IVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG--VPLGTFLGQLFGW  166 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh--ccHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999998  7778888889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCCchHHHHHHHHHHhcccchhhhHhhhC
Q 007702          162 RLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIG  237 (592)
Q Consensus       162 r~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~  237 (592)
                      |..|++.++++++.++..+..+|  |+.. .+.+..+.++.++.+++..   .....+...+..++....++|+.-
T Consensus       167 R~~F~~ia~l~ll~~~~~~~~lP--~~~~-~~~~~~~~~~~~~~l~~p~---v~~~l~~t~l~~~g~F~~ftYi~P  236 (394)
T COG2814         167 RATFLAIAVLALLALLLLWKLLP--PSEI-SGSLPGPLRTLLRLLRRPG---VLLGLLATFLFMTGHFALYTYIRP  236 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCC--CccC-CCCCCcchhHHHHHhcCch---HHHHHHHHHHHHcchhhhHHhHHH
Confidence            99999999999998888889999  2211 1112223333444444333   233445555667777788877653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.85  E-value=1.5e-20  Score=203.96  Aligned_cols=208  Identities=38%  Similarity=0.664  Sum_probs=175.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLG--------TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPML   74 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s--------~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~l   74 (592)
                      +.+...+.+.++.++.+++...+++.++.+..+++.+        ..+.+++.+++.++..++.+++|+++||+|||+++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~  104 (481)
T TIGR00879        25 KVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSL  104 (481)
T ss_pred             HHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHH
Confidence            4456666777788899999999999999988888877        78999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH-
Q 007702           75 ILSSVLYFVSGLVMLWS---PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV-  150 (592)
Q Consensus        75 i~~~~l~~i~~~~~~~s---~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~-  150 (592)
                      +++.++..++.++..+.   .+++.++++|++.|++.+...+....+++|++|+++|++.+++.+.+..+|.++++.+. 
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~  184 (481)
T TIGR00879       105 LIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGS  184 (481)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            99999999998888654   34568999999999999999999999999999999999999999999999999996665 


Q ss_pred             HHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCC
Q 007702          151 FGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGRED  211 (592)
Q Consensus       151 ~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~  211 (592)
                      .........+||++|++.++..++ .++..+++||+|+++..+++.+++.+.+++....++
T Consensus       185 ~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (481)
T TIGR00879       185 GKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG  244 (481)
T ss_pred             HhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC
Confidence            113344567999999986655554 445677899999998877777777777766655443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.85  E-value=5.6e-20  Score=197.98  Aligned_cols=185  Identities=20%  Similarity=0.197  Sum_probs=167.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      .+..++.++++++.+++|...++.+.|.+++++|++.++.+++.+++.+++.+++++.|+++||+|||+++.++.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~   85 (412)
T TIGR02332         6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGI   85 (412)
T ss_pred             hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHH
Confidence            57788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh----cCCC
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL----LASP  159 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~----~~~~  159 (592)
                      ++++++++++++.+++.|++.|++.+...+....+++|++|+++|++.+++.+.+..+|..+++........    .+..
T Consensus        86 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  165 (412)
T TIGR02332        86 ASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALK  165 (412)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999888655433221    1346


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +||+.|.+.+++.++..++.++++||+|+
T Consensus       166 gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       166 GWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            99999999888887777777788999985

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00898 2A0119 cation transport protein

Probab=99.85  E-value=1.3e-21  Score=215.86  Aligned_cols=179  Identities=31%  Similarity=0.489  Sum_probs=159.2

Q ss_pred             HHHHHHHHHcCCC---chHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 007702           27 GAIVYIKKDLNLG---TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLL  103 (592)
Q Consensus        27 ~~~~~i~~~~~~s---~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l  103 (592)
                      +..+.+.+||+++   ..+.+++.+++.+|.++++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3456788899998   8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      .|++.+...+...+++.|++|+++|+...++.+.+..+|.++++.+....     .+||+.+++.+++.++.+++ .+++
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~-----~~wr~~~~~~~i~~~~~~~~-~~~~  263 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI-----PDWRWLQLAVSLPTFLFFLL-SWFV  263 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            99999999999999999999999999999999999999988875544322     14999999998888775544 5889


Q ss_pred             cCChhHHHhcCcHHHHHHHHHHHhCCCC
Q 007702          184 PESPRWLVSKGKMLEAKQVLQRLRGRED  211 (592)
Q Consensus       184 pEsP~~l~~~~~~~ea~~~l~~l~~~~~  211 (592)
                      ||+|+|+..+++.+++.+.+++..+.+.
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~  291 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKING  291 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999888775543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=2.1e-20  Score=207.39  Aligned_cols=171  Identities=30%  Similarity=0.520  Sum_probs=148.8

Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhh
Q 007702           34 KDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVT  113 (592)
Q Consensus        34 ~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~  113 (592)
                      +.++.+.....+..+++++|.++|++++|+++|++|||++++++.++.+++.++.++++|++.+++.|+++|++.++..+
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            44555668889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhc
Q 007702          114 LVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSK  193 (592)
Q Consensus       114 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~  193 (592)
                      ++.++++|+.++++|+...++.......|.+..++..+..   .  +||+.+++..+++++.+++ +++.||||||+..+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~---~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT---R--DWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSK  264 (521)
T ss_pred             HhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---h--hHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHc
Confidence            9999999999999999999995555555555443333222   1  9999999999999876554 67777999999999


Q ss_pred             CcHHHHHHHHHHHhCCC
Q 007702          194 GKMLEAKQVLQRLRGRE  210 (592)
Q Consensus       194 ~~~~ea~~~l~~l~~~~  210 (592)
                      ++.+++.+.+++..+.+
T Consensus       265 g~~~~a~~~l~~~a~~n  281 (521)
T KOG0255|consen  265 GRIDEAIKILKKIAKLN  281 (521)
T ss_pred             CchHHHHHHHHHHHhhc
Confidence            99999999999987644

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.82  E-value=1.5e-18  Score=184.81  Aligned_cols=188  Identities=21%  Similarity=0.252  Sum_probs=164.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      +.+.....+.++++..+++...+++..|.++++++++..+.+++.+++.++..++.++.|.++||+|||++++++.++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~   88 (405)
T TIGR00891         9 AQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFS   88 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            55777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      ++++++.++++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+.+..+|..+++.+..........+||
T Consensus        89 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~  168 (405)
T TIGR00891        89 AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWR  168 (405)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999998886544333222223599


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHHH
Q 007702          163 LMLGVLSIPALLYFAFAVFFLPESPRWLV  191 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l~~~~~pEsP~~l~  191 (592)
                      +.|.+.+++.++ .++..+.+||+|++..
T Consensus       169 ~~f~~~~~~~~~-~~~~~~~~~~~~~~~~  196 (405)
T TIGR00891       169 ALFFISILPIIF-ALWLRKNIPEAEDWKE  196 (405)
T ss_pred             HHHHHHHHHHHH-HHHHHHhCCCChhHHH
Confidence            999876665554 4455677899887653

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.82  E-value=2.7e-18  Score=183.97  Aligned_cols=189  Identities=24%  Similarity=0.307  Sum_probs=169.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      ++.+..++.+++..+.++++....+...|.+.++++.+..+.+++.+.+.++..+++++.|+++||+|||++++.+.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   90 (406)
T PRK11551         11 SRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALF   90 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            35677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCch
Q 007702           82 FVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSW  161 (592)
Q Consensus        82 ~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~W  161 (592)
                      .++.+++.++++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+.+..+|..+++.+  .....+..+|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~  168 (406)
T PRK11551         91 GLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVI--GVLAAGDAAW  168 (406)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccccCH
Confidence            99999999999999999999999999999999999999999999999999999999999999888544  3344566789


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCChhHHHh
Q 007702          162 RLMLGVLSIPALLYFAFAVFFLPESPRWLVS  192 (592)
Q Consensus       162 r~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~  192 (592)
                      |++|++.+++.++.+++..+++||+|++...
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  199 (406)
T PRK11551        169 RHIFYVGGVGPLLLVPLLMRWLPESRAFAQA  199 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence            9999988877766666667788999887543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.82  E-value=9.1e-19  Score=188.82  Aligned_cols=183  Identities=23%  Similarity=0.314  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      ...++.+.++++..+++.....+..|.+++++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHH
Q 007702           85 GLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLM  164 (592)
Q Consensus        85 ~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~  164 (592)
                      .++++++++++.++++|++.|++.|..++....++.|++|+++|++.+++.+.+..+|.++++.+  .....+..+||++
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l--~~~l~~~~~w~~~  174 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYF--MPSFAEAYGWRAA  174 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHH--HHHHcccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887433  3344566799999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          165 LGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       165 f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                      |++..++.++ .++.....||++++.
T Consensus       175 f~i~~~~~~~-~~~~~~~~p~~~~~~  199 (426)
T PRK12307        175 FFVGLLPVLL-VIYIRARAPESKEWE  199 (426)
T ss_pred             HHHHHHHHHH-HHHHHHHCCCChHHH
Confidence            9875544333 333344568877653

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.81  E-value=2.6e-18  Score=186.16  Aligned_cols=187  Identities=22%  Similarity=0.247  Sum_probs=152.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchHH---HHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLN---LGTTVE---GLVVAMSLIGATAITTCSGPISDWLGRRPMLIL   76 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~---~s~~~~---gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~   76 (592)
                      +.+..++.++++++++++|...++.+.|.+.++++   .+..+.   +.+.+...++..+|++++|+++||+|||+++++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            44566777889999999999999999999999985   344433   334455556666999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHH
Q 007702           77 SSVLYFVSGLVMLWSPNVY--------VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYC  148 (592)
Q Consensus        77 ~~~l~~i~~~~~~~s~~~~--------~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~  148 (592)
                      +.++++++++++++++++.        .+++.|+++|++.|..++....+++|++|+++||+..++.+.+..+|.+++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764        58899999999999999999999999999999999999988888888887754


Q ss_pred             HHHHhHh------cCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          149 MVFGMSL------LASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       149 ~~~~~~~------~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                      .......      ....+||++|++.+++.++. ++....+||+|++.
T Consensus       179 ~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~  225 (432)
T PRK10406        179 VVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQE  225 (432)
T ss_pred             HHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHH
Confidence            4322211      13579999999888877664 34466789998763

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.81  E-value=1.7e-18  Score=190.82  Aligned_cols=186  Identities=17%  Similarity=0.186  Sum_probs=168.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH
Q 007702            1 MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL   80 (592)
Q Consensus         1 m~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l   80 (592)
                      |.|.+..++.++++.++...|..+++.++|.+.+++|.+.++.+|+.+.+.++..++.++.|+++||+|||++++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          1 MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc-CccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           81 YFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA-PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        81 ~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      +.+++++++++++++.++++|+++|++.+...+.....+.+.+ |+++|++.+++......+|..++  +..+..+.+..
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~g--p~lgg~l~~~~  158 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFG--PLVGGILLEHF  158 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccC
Confidence            9999999999999999999999999999998888877776665 67999999999999999999998  44556666778


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +||++|++...+.++.+++..+++||.|.
T Consensus       159 gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        159 YWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999998877777766677778888753

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.81  E-value=8.4e-20  Score=183.37  Aligned_cols=204  Identities=23%  Similarity=0.288  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      +.....+..+++-...-.-..+.+.|.....++++..+..++....+.|..+++..+|.++|++|||+.+.+..+..++.
T Consensus        77 ~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~  156 (528)
T KOG0253|consen   77 WYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVF  156 (528)
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHH
Confidence            45566667777766666666667778888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHH
Q 007702           85 GLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLM  164 (592)
Q Consensus        85 ~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~  164 (592)
                      .++.+.+||+..+++.|.+.|+|.|+ .|...++-.|..|..+|+..+.+. +.+.+|.++..++.++.  ....||||.
T Consensus       157 ~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~v--m~~~gwr~~  232 (528)
T KOG0253|consen  157 GVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGV--MSNFGWRYL  232 (528)
T ss_pred             HHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHH--HHhhhHHHH
Confidence            99999999999999999999999999 788888899999999999988887 88999999886665543  345599999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCCch
Q 007702          165 LGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVS  213 (592)
Q Consensus       165 f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~~~  213 (592)
                      ....+.|..+ +....+++||||||+..+|+.++|.+.++++.+.|...
T Consensus       233 l~~~~~pl~~-~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~q  280 (528)
T KOG0253|consen  233 LFTSSTPLMF-AARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQ  280 (528)
T ss_pred             HHHHHhHHHH-HHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCC
Confidence            8888866655 44667899999999999999999999999998877544

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.80  E-value=3.4e-18  Score=181.24  Aligned_cols=167  Identities=17%  Similarity=0.115  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 007702           21 DNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIA  100 (592)
Q Consensus        21 ~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~  100 (592)
                      ....+++.+|.+++++|++..+.+++.+.+.+++.+++++.|+++||+|||++++.+.+....+.+.....++++.+++.
T Consensus         6 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   85 (368)
T TIGR00903         6 IWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLAC   85 (368)
T ss_pred             HHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999998766555554544333334799999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      |+++|++.+. .......++|++|+++|++++++.+.+..+|..+++.+.  ..+.+..+||+.|++.++++++..++.+
T Consensus        86 R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~--~~l~~~~gWr~~f~~~~~l~~~~~~~~~  162 (368)
T TIGR00903        86 QLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAG--LKIYTAGGLQLLIIPIAAVAAAGIILVL  162 (368)
T ss_pred             HHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            9999999986 455666679999999999999999999999999995443  4444577999999998888888777788


Q ss_pred             hhccCChhHH
Q 007702          181 FFLPESPRWL  190 (592)
Q Consensus       181 ~~~pEsP~~l  190 (592)
                      +++||+|++.
T Consensus       163 ~~lp~~p~~~  172 (368)
T TIGR00903       163 AALPALPFQA  172 (368)
T ss_pred             HHcCCCCCCC
Confidence            8999999863

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.79  E-value=5.2e-20  Score=191.25  Aligned_cols=187  Identities=18%  Similarity=0.264  Sum_probs=171.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH
Q 007702            1 MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL   80 (592)
Q Consensus         1 m~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l   80 (592)
                      |++..+.++++++.++++..|..++...++.++..||++++..|++.+++.+..++.+|++|+++|||+||+++.++..+
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~i  107 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFI  107 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           81 YFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        81 ~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                      +.++.+.++++..+|+++++|-+.|+|.+.+.++++.+++|.+|..+|++..++++++..+|..+|++..-...-.+ ..
T Consensus       108 W~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-~~  186 (493)
T KOG1330|consen  108 WTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-FW  186 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-cc
Confidence            99999999999999999999999999999999999999999999999999999999999999998865443222222 23


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      |||.|...+++++++.++..++.+|.+|
T Consensus       187 Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  187 WRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             eEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            9999999999999999999999999865

>PRK09952 shikimate transporter; Provisional

Probab=99.79  E-value=8.7e-18  Score=182.40  Aligned_cols=187  Identities=18%  Similarity=0.226  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHc--CCCchHHHHHH-----HHHHHHHHHHHhhHHhhhhhcCchHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVY-IKKDL--NLGTTVEGLVV-----AMSLIGATAITTCSGPISDWLGRRPMLIL   76 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~-i~~~~--~~s~~~~gli~-----s~~~lg~~ig~~~~G~l~Dr~GRK~~li~   76 (592)
                      ......+.++++.++||...++...+. +.+++  +.++. .+++.     ++.+++..+|+++.|+++||+|||+++++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            346677888999999999999987764 56666  66665 45543     34556778999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHH
Q 007702           77 SSVLYFVSGLVMLWSPNVY--------VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYC  148 (592)
Q Consensus        77 ~~~l~~i~~~~~~~s~~~~--------~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~  148 (592)
                      +.++++++++++++++++.        .++++|+++|++.|..++....+++|++|+++||+..+..+.+..+|.+++..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~  179 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG  179 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987        58889999999999999999999999999999999999999999999888754


Q ss_pred             HHHHhHh------cCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhc
Q 007702          149 MVFGMSL------LASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSK  193 (592)
Q Consensus       149 ~~~~~~~------~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~  193 (592)
                      +......      ....+||++|++.+++.++ .++....+||+|+|...+
T Consensus       180 ~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~  229 (438)
T PRK09952        180 LVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQ  229 (438)
T ss_pred             HHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHH
Confidence            4322211      1357999999888777654 334456789999886443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.79  E-value=9e-18  Score=179.25  Aligned_cols=184  Identities=18%  Similarity=0.196  Sum_probs=158.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      +.+..++.+.++.+..........+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   85 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI   85 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            34555666666666666666666677899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      ++++++.++++++.++++|+++|++.+...+....++.|++|+++|++.+++.+.+..+|..+++..  .....+..+||
T Consensus        86 ~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l--~~~l~~~~gw~  163 (390)
T PRK03545         86 ASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPL--GRVIGQYLGWR  163 (390)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhH--HHHHHHHhcHH
Confidence            9999999999999999999999999999989999999999999999999999999999999888443  33444567999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          163 LMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      ++|++.+++.++..++.++++||.|+
T Consensus       164 ~~f~~~~~~~~l~~~~~~~~~~~~~~  189 (390)
T PRK03545        164 TTFLAIGGGALITLLLLIKLLPLLPS  189 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            99999988887766666666787653

>PRK15075 citrate-proton symporter; Provisional

Probab=99.78  E-value=4.2e-18  Score=184.62  Aligned_cols=185  Identities=19%  Similarity=0.262  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHH-HHHHHHH-----HHHHHHHhhHHhhhhhcCchHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEG-LVVAMSL-----IGATAITTCSGPISDWLGRRPMLILS   77 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~g-li~s~~~-----lg~~ig~~~~G~l~Dr~GRK~~li~~   77 (592)
                      ++.....++++.+++++|...++.+.|.++++++.+..+.+ +..+...     ++..+++++.|+++||+|||++++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~   92 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVT   92 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHH
Confidence            44578889999999999999999999999999998775543 3333322     23347889999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702           78 SVLYFVSGLVMLWSPNVY--------VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus        78 ~~l~~i~~~~~~~s~~~~--------~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      .+++.+++++++++++++        .++++|+++|++.|...+....+++|++|+++|++.+++.+....+|..+++.+
T Consensus        93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075         93 LSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999877        468899999999999999999999999999999999999888777777666444


Q ss_pred             HHHhH------hcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          150 VFGMS------LLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       150 ~~~~~------~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      .....      ..+..+||++|++..++..+ ..+.....||++.+
T Consensus       173 g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~  217 (434)
T PRK15075        173 GYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEF  217 (434)
T ss_pred             HHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHH
Confidence            33321      12467999999875544322 22334456676544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.78  E-value=6.4e-19  Score=185.91  Aligned_cols=172  Identities=19%  Similarity=0.191  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccH
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNV   94 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~   94 (592)
                      ++...++...++...|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||++++++.++..++.+++++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   82 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY   82 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCH
Confidence            45667788888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHH
Q 007702           95 YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALL  174 (592)
Q Consensus        95 ~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~  174 (592)
                      +.++++|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++.+.  ....+..+||++|++.+++.++
T Consensus        83 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~  160 (399)
T TIGR00893        83 VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLV--GWILIHFSWQWAFIIEGVLGII  160 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHHhCCchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999885443  3344566899999988888777


Q ss_pred             HHHHHHhhccCChh
Q 007702          175 YFAFAVFFLPESPR  188 (592)
Q Consensus       175 ~~~l~~~~~pEsP~  188 (592)
                      ..++.+++.||+|+
T Consensus       161 ~~~~~~~~~~~~~~  174 (399)
T TIGR00893       161 WGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHhhheecCCCC
Confidence            66666677787754

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.78  E-value=4.9e-18  Score=178.55  Aligned_cols=176  Identities=19%  Similarity=0.201  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      +...+..+..+. ....++..|.+.+++|++..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.+++
T Consensus         7 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~   85 (377)
T TIGR00890         7 VGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFY   85 (377)
T ss_pred             HHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHH
Confidence            333344444444 4467788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      +++++++.++++|++.|++.+..++....++.|++| ++|++..++...+..+|..++...  .....+..+||+.|++.
T Consensus        86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~f~~~  162 (377)
T TIGR00890        86 AIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPL--ITSVINLEGVPAAFIYM  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHH--HHHHHhcccHHHHHHHH
Confidence            999999999999999999999988888888999987 579999999999988887765322  22333456999999998


Q ss_pred             HHHHHHHHHHHHhhccCChh
Q 007702          169 SIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       169 ~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +++.++..++.++++++.|+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~  182 (377)
T TIGR00890       163 GIIFLLVIVLGAFLIGYPPG  182 (377)
T ss_pred             HHHHHHHHHHHHHheecCch
Confidence            88887776666667766543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.77  E-value=2.4e-17  Score=177.60  Aligned_cols=181  Identities=19%  Similarity=0.326  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      .....+.+..+....+...+.+.+|.+.++++.+....++..+++.++.+++.++.|+++||+|||++++++.+++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~   95 (413)
T PRK15403         16 FFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC   95 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence            34445566666677788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           86 LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        86 ~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      +++.++++++.++++|+++|++.+...+....++.|.+|+++|++.+++......+|..+++.+.  ..+.+..+||+.|
T Consensus        96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg--~~l~~~~gw~~~f  173 (413)
T PRK15403         96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSG--AALMHFVHWKVLF  173 (413)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCHHHHH
Confidence            99999999999999999999999877777788999999999999999999999889988885443  3344567999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCChh
Q 007702          166 GVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       166 ~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      ++.+++.++.+++.++++||+++
T Consensus       174 ~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        174 AIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcc
Confidence            99888877766665677899854

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.77  E-value=2.7e-17  Score=176.04  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=160.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      |+.+...+.+.++.+..........+.+|.+.+++|++..+.++..+++.++..++.++.|+++||+|||++++.+.++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~   95 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL   95 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence            34566666777777777777667777888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCch
Q 007702           82 FVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSW  161 (592)
Q Consensus        82 ~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~W  161 (592)
                      +++.+++.++++++.+++.|++.|++.|...+....++.|++|+++|++.+++......+|..+++.  .+..+.+..+|
T Consensus        96 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~--l~~~l~~~~gw  173 (394)
T PRK10213         96 TLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAP--LGSFLGELIGW  173 (394)
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcCH
Confidence            9999999999999999999999999999999999999999999999999999999999999988844  44455566799


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          162 RLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       162 r~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      |+.|++.++++++..++.+..+||+|.
T Consensus       174 ~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        174 RNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            999998887776655555556788753

>TIGR00895 2A0115 benzoate transport

Probab=99.77  E-value=2.4e-17  Score=174.72  Aligned_cols=188  Identities=29%  Similarity=0.361  Sum_probs=166.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      .+...+.+.+..+..+++...++...|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~   94 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSV   94 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHH
Confidence            44566667778888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      +.+++.++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.+.+..+|..+++..  .....+..+|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~g~~~  172 (398)
T TIGR00895        95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFL--AGWLIPVFGWRS  172 (398)
T ss_pred             HHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHH--HHHHhhccccee
Confidence            999999999999999999999999999999999999999999999999999999999999888443  444556679999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhHHHhc
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESPRWLVSK  193 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~  193 (592)
                      .|++.+++.++..++.++++||+|++...+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (398)
T TIGR00895       173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSK  202 (398)
T ss_pred             ehhhhhhHHHHHHHHHHHhCCCCChHHHhc
Confidence            998887666666667778899998876544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.4e-18  Score=178.08  Aligned_cols=188  Identities=22%  Similarity=0.292  Sum_probs=156.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHH
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLN--------LGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPM   73 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~--------~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~   73 (592)
                      |+.+..+.++.++.|.++||...++...+.+...|-        .++...+.+.++.++|.++|++++|+++|++|||++
T Consensus        37 w~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v  116 (538)
T KOG0252|consen   37 WKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV  116 (538)
T ss_pred             HHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence            466788999999999999999999999998877652        456788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHH
Q 007702           74 LILSSVLYFVSGLVMLWSP-------NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLA  146 (592)
Q Consensus        74 li~~~~l~~i~~~~~~~s~-------~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~  146 (592)
                      +...++++++++++++++.       -.+++.+.|++.|+|+|+-+|+..+..+|.+..+.||...+..-....+|.+.+
T Consensus       117 YG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG  196 (538)
T KOG0252|consen  117 YGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAG  196 (538)
T ss_pred             hhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhc
Confidence            9999999999999887742       257888999999999999999999999999999999999887666666666655


Q ss_pred             HHHHHHhHh-----cCC--------CchhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          147 YCMVFGMSL-----LAS--------PSWRLMLGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       147 ~~~~~~~~~-----~~~--------~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                      .++......     .+.        .-||..|.+..+|+++.+ ...+.+|||++|-
T Consensus       197 ~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~Rl~M~Et~~Y~  252 (538)
T KOG0252|consen  197 GIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFRLKMPETARYT  252 (538)
T ss_pred             cHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-HhhhcCCcchhHH
Confidence            444333211     111        149999999888888744 5578899999995

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.76  E-value=5.7e-17  Score=172.67  Aligned_cols=178  Identities=16%  Similarity=0.240  Sum_probs=157.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHH
Q 007702            8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV   87 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~   87 (592)
                      +....++.+..+.......+.+|.+.+++|.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l   84 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAM   84 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            34556677778888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702           88 MLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV  167 (592)
Q Consensus        88 ~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i  167 (592)
                      ++++++++.+++.|++.|++.+...+....++.|++|+++|++.+++...+..+|..+++.  .+....+..+||++|++
T Consensus        85 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~--l~~~l~~~~gwr~~f~~  162 (382)
T PRK10091         85 FTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIP--LGTYLSQEFSWRYTFLL  162 (382)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhcc--HHHHHhhhccHHHHHHH
Confidence            9999999999999999999999988888999999999999999999988888888888743  34444556799999999


Q ss_pred             HHHHHHHHHHHHHhhccCCh
Q 007702          168 LSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~pEsP  187 (592)
                      .+++.++.++..++++||.+
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCC
Confidence            88887776666667788864

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.75  E-value=9e-17  Score=172.42  Aligned_cols=186  Identities=20%  Similarity=0.278  Sum_probs=161.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      ++.++..+.+.++.+...++...+.+.+|.+.++++.+..+.++..+.+.++..++.++.|+++||+|||++++++.++.
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~   88 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            35677888888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCch
Q 007702           82 FVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSW  161 (592)
Q Consensus        82 ~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~W  161 (592)
                      .++.++..++++++.+++.|++.|++.+...+..+.++.|.+|+++|++..++......+|..+++..  .....+..+|
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i--~~~l~~~~~w  166 (406)
T PRK15402         89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLV--GAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCc
Confidence            99999999999999999999999999998888899999999999999998888877777777777433  3334456799


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          162 RLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       162 r~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      |++|++.+++.++.++..++..||+++.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGR  194 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            9999988888777666666778887643

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.75  E-value=5.5e-17  Score=175.92  Aligned_cols=182  Identities=17%  Similarity=0.189  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      .+.+.+.++++...++...++..+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+++.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence            45566778888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           86 LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        86 ~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      ++++++++++.+++.|++.|++.|...+....++.|++|+++|++.+++.+.+..+|..+++.+.  ....+..+||++|
T Consensus       103 ~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~--~~l~~~~gw~~~f  180 (434)
T PRK11663        103 ILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVV--GAIALHYGWRYGM  180 (434)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHcccHHHHH
Confidence            99999999999999999999999998899999999999999999999999999999998885433  3344567999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCChhH
Q 007702          166 GVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       166 ~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      ++.+++.++..++..+++||+|.+
T Consensus       181 ~~~~i~~~~~~~~~~~~~~~~p~~  204 (434)
T PRK11663        181 MIAGIIAIVVGLFLCWRLRDKPQA  204 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHhh
Confidence            988887766555666778998865

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.75  E-value=7.9e-17  Score=170.66  Aligned_cols=178  Identities=24%  Similarity=0.333  Sum_probs=156.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      +.+....++.......+.+..|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   87 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGL   87 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            34444456667788888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      .++++++.+++.|++.|++.+...+....++.|.+|+++|++..++.+....+|..+++.+  .....+..+||++|++.
T Consensus        88 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~~~~~~~~~~  165 (385)
T TIGR00710        88 ALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLL--GGYILVWLSWHAIFAFL  165 (385)
T ss_pred             HHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888444  33444567999999988


Q ss_pred             HHHHHHHHHHHHhhccCChh
Q 007702          169 SIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       169 ~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +++.++..++.+++.||+++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       166 SLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHHHhCCCCCC
Confidence            88877766666677888754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.75  E-value=3.2e-17  Score=179.64  Aligned_cols=180  Identities=21%  Similarity=0.323  Sum_probs=163.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL   86 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~   86 (592)
                      .++.++++.++..++....++..|.+.+++|.+..+.+++.+.+.++.+++.++.|+++||+|||++++++.+++.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHH
Q 007702           87 VMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLG  166 (592)
Q Consensus        87 ~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~  166 (592)
                      +++++++++.++++|+++|++.+...+....++.|++|+++|++..++......+|..+++  ..+....+..+||+.|+
T Consensus        83 ~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~--~~~~~l~~~~~w~~~f~  160 (485)
T TIGR00711        83 LCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGP--TLGGWIIENYHWRWIFL  160 (485)
T ss_pred             HHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh--ccHhHhccCcCceehhh
Confidence            9999999999999999999999999999999999999999999999999999999998884  34455667789999999


Q ss_pred             HHHHHHHHHHHHHHhhccCChh
Q 007702          167 VLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       167 i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +.+++.++..++..+++||+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCccc
Confidence            8888877766666777787543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.75  E-value=4e-17  Score=171.96  Aligned_cols=178  Identities=24%  Similarity=0.187  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      ..+++.+........+.+..|. +++++|++..+.+++.+++.++.++++++.|+++||+|||++++++.++..++.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~   84 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWA   84 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            4556666667777788888894 999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhc-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh--c------CCC
Q 007702           89 LWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL--L------ASP  159 (592)
Q Consensus        89 ~~s~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~--~------~~~  159 (592)
                      ++++ +++.+++.|++.|++.+. .+....+++|++|+++|++.+++......+|..+++.+......  .      ...
T Consensus        85 ~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  163 (366)
T TIGR00886        85 GLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL  163 (366)
T ss_pred             HHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            9999 999999999999998654 46678899999999999999999887777776666444322111  0      234


Q ss_pred             chhHHH-HHHHHHHHHHHHHHHhhccCChh
Q 007702          160 SWRLML-GVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       160 ~Wr~~f-~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +||+.| .+.+++..+..++..++.+|+|+
T Consensus       164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       164 AWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            899999 44455555545555566777764

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.74  E-value=1.7e-16  Score=174.69  Aligned_cols=185  Identities=23%  Similarity=0.305  Sum_probs=162.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      .+..+..++++.+..+++....++.+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   97 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            35577788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      +.+++.++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++...+..+|..+++...  ....+..+||+
T Consensus        98 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~w~~  175 (496)
T PRK03893         98 GTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY--SLVVPVWGWRA  175 (496)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999885443  44556779999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhHHH
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESPRWLV  191 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP~~l~  191 (592)
                      .|++..++.++ .++....+||++++..
T Consensus       176 ~f~~~~~~~~~-~~~~~~~~p~~~~~~~  202 (496)
T PRK03893        176 LFFIGILPIIF-ALWLRKNLPEAEDWKE  202 (496)
T ss_pred             HHHHHHHHHHH-HHHHHHhCCCchhhhh
Confidence            99875444433 4444567788877643

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.74  E-value=9.1e-17  Score=171.46  Aligned_cols=171  Identities=19%  Similarity=0.278  Sum_probs=148.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccH
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNV   94 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~   94 (592)
                      .++.......+.+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.++++.++..++.+++.+++++
T Consensus        12 ~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~   91 (392)
T PRK10473         12 VLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETS   91 (392)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcH
Confidence            33344444455578899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHH
Q 007702           95 YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALL  174 (592)
Q Consensus        95 ~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~  174 (592)
                      +.+++.|++.|++.+...+....++.|.+|+++|++..++.+....+|..+++.+  +....+..+||+.|++.+++.++
T Consensus        92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i--~~~l~~~~g~~~~~~~~~~~~~i  169 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVL--GHLIMLKFPWQSLFYTMAAMGIL  169 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCcChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888877544  33344567999999998888777


Q ss_pred             HHHHHHhhccCCh
Q 007702          175 YFAFAVFFLPESP  187 (592)
Q Consensus       175 ~~~l~~~~~pEsP  187 (592)
                      ..++..+++||++
T Consensus       170 ~~~~~~~~~~~~~  182 (392)
T PRK10473        170 VLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHcCCCC
Confidence            7777677788874

>PRK10133 L-fucose transporter; Provisional

Probab=99.74  E-value=1.5e-16  Score=172.74  Aligned_cols=148  Identities=16%  Similarity=0.083  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      ..+.+..+++..++.+++....++..|.++++++++..+.+++.+.+.+++.+++++.|+++||+|||++++++.+++++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~  103 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL  103 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            56667778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHH
Q 007702           84 SGLVM---LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVF  151 (592)
Q Consensus        84 ~~~~~---~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~  151 (592)
                      +.+++   .++++++.++++|+++|++.|...+....++.|+.|.++|...+++.+....+|..+++.+..
T Consensus       104 ~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        104 GAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99875   468899999999999999999999999999999887777777888999999999998866543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.73  E-value=9.5e-17  Score=167.40  Aligned_cols=175  Identities=29%  Similarity=0.484  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh
Q 007702           12 TIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW   90 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~   90 (592)
                      +++.++.++....+.+.+| .+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+++.++..+
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            5677888888888999999 899999999999999999999999999999999999999999999999999999777667


Q ss_pred             hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           91 SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        91 s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                      +++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..++  +..+..+.+..+||++|++.++
T Consensus        82 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g--~~l~~~l~~~~~~~~~~~~~~~  159 (352)
T PF07690_consen   82 ASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILG--PLLGGFLISYFGWRWAFLISAI  159 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHH--HHHHHHCCCHCHHCCHHHHHHH
T ss_pred             hhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcc--cchhhhhhhccccccccccccc
Confidence            78888999999999999999999999999999999999999999999999999998  4445555677799999999999


Q ss_pred             HHHHHHHHHHhhccCChh
Q 007702          171 PALLYFAFAVFFLPESPR  188 (592)
Q Consensus       171 ~~~~~~~l~~~~~pEsP~  188 (592)
                      +.++.+++..++++++|.
T Consensus       160 ~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             HHHHHHHHHHCCC---ST
T ss_pred             hhhhhhhhHhhhhhhccc
Confidence            888876655566665544

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.73  E-value=4.6e-16  Score=166.19  Aligned_cols=185  Identities=19%  Similarity=0.214  Sum_probs=157.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      +.+.....+.+..+...+....+.+.+|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++++.++.+
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~   84 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFI   84 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHH
Confidence            44555555555666666777778888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      ++.+++.++++++.+++.|++.|++.+...+....+..|.+|.++|+..+++.+.+..+|..+++..  .....+..+||
T Consensus        85 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i--~~~l~~~~g~~  162 (394)
T PRK11652         85 LGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLI--GGLLTTLFGWR  162 (394)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccChH
Confidence            9999999999999999999999999998888888899999999999999999988888888887443  33444567999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          163 LMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      ++|++.+++.++..++..++.||+|..
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~  189 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPA  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCcc
Confidence            999988877776666666778987643

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.72  E-value=1e-16  Score=175.45  Aligned_cols=186  Identities=17%  Similarity=-0.005  Sum_probs=157.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      .+.+...++++++....+...++.+.|.+.+++|++..+.|++.+++.+++.++.++.|+++||+|||+++.++.++.++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            34466777888888888999999999999999999999999999999999999999999999999999999888888777


Q ss_pred             HHHHHHh-----hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhc-C
Q 007702           84 SGLVMLW-----SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLL-A  157 (592)
Q Consensus        84 ~~~~~~~-----s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-~  157 (592)
                      ++++.++     +++++.+++.|++.|++.+...+....+++|++|+++||+++++.+.+..+|..++..+....... .
T Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~  186 (467)
T PRK09556        107 CMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF  186 (467)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence            7666654     689999999999999999999999999999999999999999999999999998886554322211 1


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          158 SPSWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       158 ~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      ..+||..|.+.+++.++..++.+++.+++|..
T Consensus       187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~  218 (467)
T PRK09556        187 DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEE  218 (467)
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence            23699999888888777666666777777653

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.70  E-value=2.9e-16  Score=162.05  Aligned_cols=187  Identities=17%  Similarity=0.164  Sum_probs=173.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      .++-+.+.+.+++..+++....++.+.|.+.++.+++.++.|++.+.+.+.+.++.++.|.++||.+.|..+..++++.+
T Consensus        26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa  105 (448)
T COG2271          26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA  105 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence            45667888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      +.+++++++++++.+.+.-++.|+..|.-.|.+...++.++|+++||+..++.+.+.++|..+.+.+........+.+||
T Consensus       106 i~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~  185 (448)
T COG2271         106 IVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWR  185 (448)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999998886655434455566999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          163 LMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      ..|++.+++++++.++.++.++++|.-
T Consensus       186 ~~f~~pgiiaiival~~~~~~rd~Pqs  212 (448)
T COG2271         186 AAFYFPGIIAIIVALILLFLLRDRPQS  212 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            999999999999999999999999864

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.70  E-value=1.3e-15  Score=167.69  Aligned_cols=190  Identities=16%  Similarity=0.185  Sum_probs=139.1

Q ss_pred             HHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHH---HHhhccHHHHHHHH
Q 007702           26 AGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV---MLWSPNVYVLCIAR  101 (592)
Q Consensus        26 ~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~---~~~s~~~~~ll~~R  101 (592)
                      ...+| ++++++|.+....+++.+...++..++.++.|+++||+|||++++++.++..++.+.   ...+++...+++++
T Consensus       270 ~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (490)
T PRK10642        270 LTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGL  349 (490)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            33444 456778998887888888889999999999999999999999998887654433322   22345677888899


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 007702          102 LLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       102 ~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      ++.|++.+...+..+.++.|.+|++.||...++ ++++..+|.+..++..+..  ....+|+.++++..+++++.+ +..
T Consensus       350 ~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~--~~~~~~~~~~~~~~~~~~i~~-~~~  426 (490)
T PRK10642        350 LMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV--ESTQNLMMPAYYLMVVAVIGL-ITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHH-HHH
Confidence            999998888778888899999999999998886 5665555543332222221  122367888777777666644 445


Q ss_pred             hhccCChhHHHhc-----CcHHHHHHHHHHHhCCCCchHHHHHHH
Q 007702          181 FFLPESPRWLVSK-----GKMLEAKQVLQRLRGREDVSGEMALLV  220 (592)
Q Consensus       181 ~~~pEsP~~l~~~-----~~~~ea~~~l~~l~~~~~~~~~~~~i~  220 (592)
                      +++||||+|+.++     +|.+||++.+++++.  +++.|++++.
T Consensus       427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~~i~  469 (490)
T PRK10642        427 VTMKETANRPLKGATPAASDIQEAKEILVEHYD--NIEQKIDDID  469 (490)
T ss_pred             HHhccccCCCCCCccccccchhhHHHHhhcccc--cccchhhhcc
Confidence            6779999998765     999999999999983  4455555444

>PRK10504 putative transporter; Provisional

Probab=99.69  E-value=1.3e-15  Score=166.82  Aligned_cols=180  Identities=19%  Similarity=0.286  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      ...+.++++.++..++...+++.+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.+++.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            34566778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           86 LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        86 ~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      +++.++++++.+++.|+++|++.+...+....++.|.+|+++|+...++......+|..+++.+  .....+..+||+.|
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~--~g~l~~~~gw~~~f  167 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPAL--GGLLVEYASWHWIF  167 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHhhccHHHHH
Confidence            9889999999999999999999999999999999999999999999999999888998888444  44445667999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCCh
Q 007702          166 GVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       166 ~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      .+.....++..++.....|+.+
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcc
Confidence            8887776666666666666653

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.69  E-value=1.5e-16  Score=167.36  Aligned_cols=175  Identities=19%  Similarity=0.205  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc
Q 007702           13 IGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP   92 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~   92 (592)
                      ++++...++...++...|++.+++|++..+.+++.+++.++..++.++.|+++||+|||++++++.++..++.+++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   81 (379)
T TIGR00881         2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST   81 (379)
T ss_pred             chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence            35677788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHH
Q 007702           93 NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPA  172 (592)
Q Consensus        93 ~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~  172 (592)
                      +++.+++.|++.|++.+...+....+++|++|+++|++.+++.+.+..+|..+++.. .........+||+.|++.+++.
T Consensus        82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T TIGR00881        82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPL-VLFGIAELYSWHWVFIVPGIIA  160 (379)
T ss_pred             hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHH-HHHHHHhcCCchhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888521 2223345679999999888877


Q ss_pred             HHHHHHHHhhccCChh
Q 007702          173 LLYFAFAVFFLPESPR  188 (592)
Q Consensus       173 ~~~~~l~~~~~pEsP~  188 (592)
                      ++..++.+++.||+|+
T Consensus       161 ~~~~~~~~~~~~~~~~  176 (379)
T TIGR00881       161 IIVSLICFLLLRDSPQ  176 (379)
T ss_pred             HHHHHHHheeeCCCcc
Confidence            7766677778888764

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.69  E-value=1.6e-15  Score=158.91  Aligned_cols=166  Identities=12%  Similarity=0.095  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW   90 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~   90 (592)
                      +.++.++..+......+.+|.+..+++.+..+.+++.+++.++.+++.++.|+++||+|||++++++.++..++.++..+
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            34566777777778888888899999999999999999999999999999999999999999999999999988888888


Q ss_pred             hc-----cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           91 SP-----NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        91 s~-----~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      ++     +++.+++.|++.|++.+...+....+++|++|+++|++.+++.+....+|.++++.+  +..+.+..+||+.|
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l--~~~l~~~~g~~~~~  161 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGI--GGLMYATLGIKWAI  161 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHH
Confidence            77     999999999999999999999999999999999999999999999999999988544  34444566999999


Q ss_pred             HHHHHHHHHHHHH
Q 007702          166 GVLSIPALLYFAF  178 (592)
Q Consensus       166 ~i~~i~~~~~~~l  178 (592)
                      ++.++..++..++
T Consensus       162 ~~~~~~~~~~~~~  174 (365)
T TIGR00900       162 WVDAVGFAISALL  174 (365)
T ss_pred             HHHHHHHHHHHHH
Confidence            8877766554433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.69  E-value=1.9e-16  Score=173.08  Aligned_cols=185  Identities=16%  Similarity=0.217  Sum_probs=160.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HcCCCchHHHHHHHHHHHHHHHHHhh
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKK----------------------DLNLGTTVEGLVVAMSLIGATAITTC   60 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~----------------------~~~~s~~~~gli~s~~~lg~~ig~~~   60 (592)
                      .++.+...++++......|...++.+.+.+.+                      +++++..+.|++.+.+.++++++.++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~   95 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQIP   95 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHcc
Confidence            45677788888888889999888888777766                      78899999999999999999999999


Q ss_pred             HHhhhhhcCchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHH
Q 007702           61 SGPISDWLGRRPMLILSSVLYFVSGLVMLWS--PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFT  138 (592)
Q Consensus        61 ~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s--~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~  138 (592)
                      .|+++||+|||+++.++.++.+++++++.++  .+++.+++.|+++|++.+...+....+++|++|+++|++.+++.+.+
T Consensus        96 ~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  175 (465)
T TIGR00894        96 VGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSG  175 (465)
T ss_pred             hHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988887554  56888999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          139 GSGGMFLAYCMVFGMSLLAS-PSWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       139 ~~~G~~l~~~~~~~~~~~~~-~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      ..+|..+++.+.  ..+.+. .+||++|++.+++.++..++.+++.||+|+.
T Consensus       176 ~~~g~~i~~~l~--~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~  225 (465)
T TIGR00894       176 FQLGTFIFLPIS--GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI  225 (465)
T ss_pred             HHHHHHHHHHHH--HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence            999999985544  334445 4999999999988887666666777788753

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.68  E-value=3.8e-16  Score=165.15  Aligned_cols=175  Identities=23%  Similarity=0.330  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC--CchHHHHHHHH-----HHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHH
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNL--GTTVEGLVVAM-----SLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV   87 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~--s~~~~gli~s~-----~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~   87 (592)
                      .+.+.++...++...+++.+++..  ++...+...+.     ..++..+++++.|+++||+|||++++++.++..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            356788888888888888888653  34445444433     33444578899999999999999999999999999999


Q ss_pred             HHhhccHH--------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh----
Q 007702           88 MLWSPNVY--------VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL----  155 (592)
Q Consensus        88 ~~~s~~~~--------~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~----  155 (592)
                      +++++++.        .+++.|+++|++.+...+..+.+++|.+|+++|++..++.+.+..+|.++++.+......    
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~  161 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD  161 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            99998865        588899999999999999999999999999999999999999999999888655433221    


Q ss_pred             --cCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          156 --LASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       156 --~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                        ....+||++|.+.+++.++. ++....+||+|++.
T Consensus       162 ~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  197 (394)
T TIGR00883       162 DALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFE  197 (394)
T ss_pred             HHhhccchHHHHHHHHHHHHHH-HHHHHhcCCChhHH
Confidence              13568999998877665543 34456678887653

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.68  E-value=2.5e-15  Score=160.76  Aligned_cols=175  Identities=13%  Similarity=0.099  Sum_probs=152.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      +++...+.++++.+..+.+...++..+|.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++++.++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~   83 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI   83 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            44566777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      ++.++..++++++.+++.|++.|++.|...+....++.|.+|+++|+..++..+....+|..+++.+. ........+||
T Consensus        84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~gw~  162 (394)
T PRK03699         84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA-AYLLARSIEWY  162 (394)
T ss_pred             HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccHH
Confidence            99999999999999999999999999999888999999999999999999988877777777764332 22223456999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 007702          163 LMLGVLSIPALLYFAF  178 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l  178 (592)
                      ++|.+.+++.++.+++
T Consensus       163 ~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        163 WVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998888777664433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.68  E-value=3.6e-15  Score=163.69  Aligned_cols=183  Identities=17%  Similarity=0.127  Sum_probs=147.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      .........+..+...++.....+..|.+.+++|++..+.+++.+.+.+++.+++++.|+++||+|||+++.++.++.++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~  113 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP  113 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            34555566666777777777888889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh--Hh-----c
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM--SL-----L  156 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~--~~-----~  156 (592)
                      +.++++++++++.+++.|++.|++.+... ....+++|++|+++||+.+++.+....+|..++..+....  ..     .
T Consensus       114 ~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~  192 (476)
T PLN00028        114 AVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAP  192 (476)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999887653 4566889999999999999998766666665553322111  11     1


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          157 ASPSWRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       157 ~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      +..+||++|++.+++.++..++.+++.++.|
T Consensus       193 ~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p  223 (476)
T PLN00028        193 SFTAWRIAFFVPGLLHIIMGILVLTLGQDLP  223 (476)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            1258999999998888776655555555554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.68  E-value=1.7e-15  Score=165.10  Aligned_cols=182  Identities=17%  Similarity=0.150  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      +.++..+++.....+.+...++..+|++.++ |++..+.+++.+++.++.++++++.|+++||+|||++++++.++.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~  106 (452)
T PRK11273         28 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  106 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence            4444555566666666766777888998888 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc----cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHH-HHHHHHHHhHhcCCC
Q 007702           85 GLVMLWSP----NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMF-LAYCMVFGMSLLASP  159 (592)
Q Consensus        85 ~~~~~~s~----~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~-l~~~~~~~~~~~~~~  159 (592)
                      .+++++++    +++.+++.|++.|++.|...+.....+.|++|+++|++.+++.+.+..+|.. .++.......  ...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~  184 (452)
T PRK11273        107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA--WFN  184 (452)
T ss_pred             HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH--Hhc
Confidence            98887753    7888999999999999988888888899999999999999999888888763 3433222221  234


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      +||+.|++.+++.++..++.++++||+|+.
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            999999998888777777778888998864

>PRK11043 putative transporter; Provisional

Probab=99.68  E-value=5.9e-15  Score=157.99  Aligned_cols=176  Identities=22%  Similarity=0.240  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      +.+.+..++..+....+.|.+|.++++++.+..+.+++.+++.++..++++++|+++||+|||+.++.+.++..++.+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   88 (401)
T PRK11043          9 VYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGM   88 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence            33333344455667788888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      .++++++.+++.|++.|++.+...+....++.|.+|+++++...+.......+|..+++..  .....+..+||++|++.
T Consensus        89 ~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i--~~~l~~~~g~~~~~~~~  166 (401)
T PRK11043         89 LWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLL--GAWLLNHFGWQAIFATL  166 (401)
T ss_pred             HHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCChHHHHHHH
Confidence            9999999999999999999888888888899999999999888888777777777777433  33444567999999988


Q ss_pred             HHHHHHHHHHHHhhccCCh
Q 007702          169 SIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       169 ~i~~~~~~~l~~~~~pEsP  187 (592)
                      +++.++..++. ++++|++
T Consensus       167 ~~~~~~~~~~~-~~~~~~~  184 (401)
T PRK11043        167 FAITLLLILPT-LRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHH-HHcCCCC
Confidence            88777655443 4455543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.67  E-value=2.2e-15  Score=161.28  Aligned_cols=149  Identities=17%  Similarity=0.265  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 007702           23 ATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARL  102 (592)
Q Consensus        23 ~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~  102 (592)
                      ..+++++|.++++++++.++.+++.+.+.++..+++++.|+++||+|||++++.+.++++++.++++++++++.++++|+
T Consensus        26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~  105 (393)
T PRK09705         26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSAL  105 (393)
T ss_pred             hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHH
Confidence            56778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC-CchhHHHHHHHHHHHH
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS-PSWRLMLGVLSIPALL  174 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-~~Wr~~f~i~~i~~~~  174 (592)
                      ++|++.+...+..+.++.+.+| ++|++.++....+..+|..++..+.  ..+.++ .+||+.+.+.+++.++
T Consensus       106 l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~--~~l~~~~~~w~~~~~~~~~~~~~  175 (393)
T PRK09705        106 LGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAIT--PWLVQHSETWYQTLAWWALPAVV  175 (393)
T ss_pred             HHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999997 7899999999988888888775433  333333 4899988766655444

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.67  E-value=6.2e-15  Score=158.66  Aligned_cols=179  Identities=15%  Similarity=0.097  Sum_probs=152.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL   86 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~   86 (592)
                      ..+.+++..+..|+.....++..|.+++++|++..+.+++.+.+.++..+++++.|++.||+|||++++++.++++++.+
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHh---hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhc-------
Q 007702           87 VMLW---SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLL-------  156 (592)
Q Consensus        87 ~~~~---s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-------  156 (592)
                      ++..   .++++.+++.|++.|++.|...+....++.+..|+++|++..++.+....+|..+++.+.......       
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~  163 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ  163 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            8654   468999999999999999999999999999999999999999999999999999886655433211       


Q ss_pred             -----------------CCCchhHHHHHHHHHHHHHHHHHH-hhccC
Q 007702          157 -----------------ASPSWRLMLGVLSIPALLYFAFAV-FFLPE  185 (592)
Q Consensus       157 -----------------~~~~Wr~~f~i~~i~~~~~~~l~~-~~~pE  185 (592)
                                       +..+||++|.+.+++.++.+++.. ...||
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~  210 (410)
T TIGR00885       164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPA  210 (410)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                             113699999888887666444332 22554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.67  E-value=2.9e-15  Score=158.62  Aligned_cols=166  Identities=20%  Similarity=0.340  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 007702           21 DNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIA  100 (592)
Q Consensus        21 ~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~  100 (592)
                      ....+.|.+|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||+++.++.++.+++.+++.++++++.+++.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYM   85 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            34556788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      |++.|++.+...+....++.|.+|+++|++.+++.+....+|..+++..  .....+..+||++|++.+++.++..++..
T Consensus        86 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  163 (377)
T PRK11102         86 RFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPII--GGWLLVWFSWHAIFWVLALAAILAAALVF  163 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999888544  33444566899999988888777666667


Q ss_pred             hhccCChh
Q 007702          181 FFLPESPR  188 (592)
Q Consensus       181 ~~~pEsP~  188 (592)
                      +++||+++
T Consensus       164 ~~~~~~~~  171 (377)
T PRK11102        164 FFIPETLP  171 (377)
T ss_pred             HhCCccCc
Confidence            78888743

>PRK12382 putative transporter; Provisional

Probab=99.65  E-value=1.1e-14  Score=155.40  Aligned_cols=166  Identities=17%  Similarity=0.220  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      .++.+.++.+..........+.+|. +.+++|++..+.+++.+.+.++..+++++.|+++||+|||++++.+.++..++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~   95 (392)
T PRK12382         16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAG   95 (392)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            3444555566666667777777775 688999999999999999999999999999999999999999999988877665


Q ss_pred             HHHHh--------hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC
Q 007702           86 LVMLW--------SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA  157 (592)
Q Consensus        86 ~~~~~--------s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~  157 (592)
                      +....        .++++.++++|+++|++.+...+....++.|.+|+++|++++++.+.+..+|..+++..  +.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~--~~~l~~  173 (392)
T PRK12382         96 LAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPL--GLLLHS  173 (392)
T ss_pred             HHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHH--HHHHHh
Confidence            43321        35788999999999999999888888999999999999999999999888888888443  344445


Q ss_pred             CCchhHHHHHHHHHHHH
Q 007702          158 SPSWRLMLGVLSIPALL  174 (592)
Q Consensus       158 ~~~Wr~~f~i~~i~~~~  174 (592)
                      ..+||+.+.+..+..++
T Consensus       174 ~~g~~~~~~~~~~~~~~  190 (392)
T PRK12382        174 HFGFAALALTTMVLPLL  190 (392)
T ss_pred             ccChHHHHHHHHHHHHH
Confidence            67899887665554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.64  E-value=1e-14  Score=155.92  Aligned_cols=167  Identities=19%  Similarity=0.226  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      .-+..+.+..++...+.....+.+|. +++++|.+..+.+++.+++.++..+++++.|.++||+|||++++.+.++++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            34455667777777888888888886 68899999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHhh--------ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhc
Q 007702           85 GLVMLWS--------PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLL  156 (592)
Q Consensus        85 ~~~~~~s--------~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~  156 (592)
                      .+.+.++        .+++.+++.|++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.  .+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~--l~~~l~  172 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAP--LGVLLY  172 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHH--HHHHHH
Confidence            6665543        256789999999999999999999999999999999999999988888888887743  344445


Q ss_pred             CCCchhHHHHHHHHHHHH
Q 007702          157 ASPSWRLMLGVLSIPALL  174 (592)
Q Consensus       157 ~~~~Wr~~f~i~~i~~~~  174 (592)
                      +..+|++.+++..+..++
T Consensus       173 ~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        173 HWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             HcccHHHHHHHHHHHHHH
Confidence            567999998776665544

>PTZ00207 hypothetical protein; Provisional

Probab=99.64  E-value=2.1e-14  Score=158.83  Aligned_cols=200  Identities=15%  Similarity=0.103  Sum_probs=149.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      ++|+.+.+..+.....|. ...++...+.+++++|++..+.+++.++. ....+..+++|+++||+|||++++++.+++.
T Consensus        25 ~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         25 RRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            344444444443333333 44556677889999999999988888763 3444567789999999999999999999999


Q ss_pred             HHHHHHHhh------ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhc
Q 007702           83 VSGLVMLWS------PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLL  156 (592)
Q Consensus        83 i~~~~~~~s------~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~  156 (592)
                      +++++++++      ++++.+++.|++.|++.+...+.+...+.+++| ++||++.++...+..+|..+...+..... .
T Consensus       103 iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-~  180 (591)
T PTZ00207        103 LGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF-S  180 (591)
T ss_pred             HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            999999987      689999999999999999998999999999997 78999999999999999875432322222 1


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhc--cCChhHHHhcCcHHHHHHHHHHHhC
Q 007702          157 ASPSWRLMLGVLSIPALLYFAFAVFFL--PESPRWLVSKGKMLEAKQVLQRLRG  208 (592)
Q Consensus       157 ~~~~Wr~~f~i~~i~~~~~~~l~~~~~--pEsP~~l~~~~~~~ea~~~l~~l~~  208 (592)
                        .+|+..|++.++++++..++.++++  |++|+|...+++.+++++.++++++
T Consensus       181 --~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~  232 (591)
T PTZ00207        181 --DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRK  232 (591)
T ss_pred             --HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhh
Confidence              3688888888888777666666655  4455665556555566666555443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.63  E-value=1.2e-14  Score=153.57  Aligned_cols=175  Identities=20%  Similarity=0.214  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHH-HHHHHHHHHHHHHh
Q 007702           13 IGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLIL-SSVLYFVSGLVMLW   90 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~-~~~l~~i~~~~~~~   90 (592)
                      +.++..++......+.+|. +++++|.+..+.+++.+.+.++..+..++.|.++||+|||+.+++ +.++..++.+++++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   83 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW   83 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh
Confidence            4577778888888887775 678999999999999999999999999999999999999887655 55566677788889


Q ss_pred             hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchh--hHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           91 SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRL--NTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        91 s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~--~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      +++++.+++.|++.|.+.+...|....++.|..|++.|+..  .+.......+|..+++.  ......+..+||++|++.
T Consensus        84 ~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~--~~~~l~~~~~~~~~f~~~  161 (375)
T TIGR00899        84 NRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPP--LAFWLALGFGFTVMFLTA  161 (375)
T ss_pred             cchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhh--HHHHHHHhcccHHHHHHH
Confidence            99999999999999888887888888889999988877654  56667777788888743  334445567999999998


Q ss_pred             HHHHHHHHHHHHhhccCChhH
Q 007702          169 SIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       169 ~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      +++.++..++.++++||.|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccC
Confidence            888777666667778998764

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.62  E-value=3e-14  Score=152.40  Aligned_cols=176  Identities=21%  Similarity=0.217  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTV-----EGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~-----~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      ..+.++.++.++....+.+.+|.+.+++|++..+     .+++.+++.++..++.++.|+++||+|||++++.+.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            3456677778888888888999999999988643     48899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      +.+++.++++++.+++.|++.|++.+ ..+....++.+.+|+++|++.+++.+....+|.++++.+.  ..+.+..+||+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~  173 (408)
T PRK09874         97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG--GLLADSYGLRP  173 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCHHH
Confidence            99998899999999999999999765 4567778899999999999999999998889988885443  34445668999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCh
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      .|++.+++.++..++.++++||.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc
Confidence            999888877776666667778764

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.62  E-value=1.4e-14  Score=157.33  Aligned_cols=183  Identities=16%  Similarity=0.129  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      +..++.+.+++.....+...+....|++++ +|++.++.+++.+++.++..+++++.|+++||+|||++++++.++.+++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        26 WQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHH
Confidence            444555666667777766667777788775 5999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhh----ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           85 GLVMLWS----PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        85 ~~~~~~s----~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                      .++.++.    ++++.+.+.|++.|++.|...+....++.|++|+++||+.+++.+....+|..+++.+... ......+
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~~  183 (438)
T TIGR00712       105 MLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL-GMAWFND  183 (438)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH-HHHHhhh
Confidence            8877664    4677888999999999999888888999999999999999999999888888776433322 1222458


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      ||..|++.+++.++..++.++++||+|+.
T Consensus       184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  212 (438)
T TIGR00712       184 WHAALYFPAICAIIVALFAFAMMRDTPQS  212 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence            99999998888887776777888998764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.61  E-value=3.9e-14  Score=151.61  Aligned_cols=179  Identities=16%  Similarity=0.177  Sum_probs=141.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH
Q 007702            1 MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL   80 (592)
Q Consensus         1 m~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l   80 (592)
                      |+|.+.   .++++.++..+....+....+.+.++++.+....+++.+.+.+++.+..++.|+++||+|||++++++.++
T Consensus         1 ~~~~f~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          1 MSKGFY---AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             CCCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            455544   34556666666544455555667889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           81 YFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        81 ~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                      .++++++++++++.   ++.|+++|++.+...|...+++.|++|+++|++++++.+....+|..+++.+.  ..+.+. .
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lg--G~l~~~-~  151 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLG--GALADP-H  151 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-H
Confidence            99988887777664   67899999999999999999999999999999999999999989988885544  333322 3


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      |+.++.+.++..++ .++..+++||+|..
T Consensus       152 ~~~~~~i~~~~~~~-~~~~~~~l~~~~~~  179 (393)
T PRK11195        152 AEAALAVCALIYLL-AALFNLFIPRLGAR  179 (393)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhcCCCCccc
Confidence            77777666555443 33455778887643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.61  E-value=5.9e-14  Score=150.59  Aligned_cols=172  Identities=19%  Similarity=0.262  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh
Q 007702           12 TIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW   90 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~   90 (592)
                      ..+.++.......+.+.++ ++.+++|++..+.|++.+...++..+..++.|+++||+|||++++++.++..++.+.+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555544 578899999999999999999999999999999999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           91 SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        91 s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                      +++++.+++.|++.|++.+...+...+++.|.+|+++|++.+++.+....+|..+++...  ..+. ..+||++|++.++
T Consensus        96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~--g~l~-~~g~~~~f~~~~~  172 (400)
T PRK11646         96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLG--SWLL-QYDFRLVCATGAV  172 (400)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HhhHHHHHHHHHH
Confidence            999999999999999999988888899999999999999999999999999999985443  3333 5699999998887


Q ss_pred             HHHHHHHHHHhhccCC
Q 007702          171 PALLYFAFAVFFLPES  186 (592)
Q Consensus       171 ~~~~~~~l~~~~~pEs  186 (592)
                      ..++..++..+++||.
T Consensus       173 ~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        173 LFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHhCCcc
Confidence            7666555555666763

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.61  E-value=4.6e-14  Score=150.22  Aligned_cols=150  Identities=17%  Similarity=0.126  Sum_probs=137.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH
Q 007702            1 MNGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL   80 (592)
Q Consensus         1 m~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l   80 (592)
                      |++.-..++.+.++.++.+.....+++.+|.+.+++|.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~   80 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLI   80 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            55555567777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702           81 YFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        81 ~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      .+++.++++++++++.++++|+++|++.+...+.....+.+..|+++|++.++..+....+|..+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  150 (381)
T PRK03633         81 FAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLV  150 (381)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998888888888999999999999999999999998885443

>PRK10054 putative transporter; Provisional

Probab=99.61  E-value=5.6e-14  Score=150.53  Aligned_cols=171  Identities=12%  Similarity=0.151  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh
Q 007702           13 IGNFLQGWDNATIAGAI-VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS   91 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~-~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s   91 (592)
                      ++.++..+......+.+ +++++++|++..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.++..++
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            34455555555655544 46778999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHH
Q 007702           92 PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIP  171 (592)
Q Consensus        92 ~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~  171 (592)
                      ++++.+++.|++.|.+.+...+....+..|.+|+++|++..++......+|..+++.+....  . ..+|+.+|.+.++.
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l--~-~~g~~~~f~~~~~~  170 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL--V-MQSINLPFWLAAIC  170 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HhccCcHHHHHHHH
Confidence            99999999999999888888888999999999999999999999999999999885554332  2 25899999988777


Q ss_pred             HHHHHHHHHhhccCC
Q 007702          172 ALLYFAFAVFFLPES  186 (592)
Q Consensus       172 ~~~~~~l~~~~~pEs  186 (592)
                      .++..++..+++|+.
T Consensus       171 ~~i~~i~~~~~~~~~  185 (395)
T PRK10054        171 SAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            766555555666665

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.61  E-value=9.1e-14  Score=149.81  Aligned_cols=180  Identities=13%  Similarity=0.006  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVYIKK-DLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~i~~-~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      .+....++.++.......+++..+.+.+ +++++.++.+++.+++.+++.+..++.|++.||+|.|+++.++.++..+.+
T Consensus        35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~  114 (462)
T PRK15034         35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC  114 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            4445566666666777788888888766 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhh-----ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhH---h--
Q 007702           86 LVMLWS-----PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS---L--  155 (592)
Q Consensus        86 ~~~~~s-----~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~---~--  155 (592)
                      +..+++     ++++.+++.|++.|++ |..++.....+++++|+++||+++++......+|..++..+.....   +  
T Consensus       115 ~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~  193 (462)
T PRK15034        115 VWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFA  193 (462)
T ss_pred             HHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999987     8999999999999998 7788889999999999999999999997666666654433221100   0  


Q ss_pred             -----------cCCCchhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          156 -----------LASPSWRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       156 -----------~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                                 .+..+||..+++..++.++..++.++++++.|
T Consensus       194 ~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~  236 (462)
T PRK15034        194 FLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIA  236 (462)
T ss_pred             HhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                       01345888888888777776666677777654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.60  E-value=3.4e-14  Score=147.47  Aligned_cols=168  Identities=27%  Similarity=0.409  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML   89 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~   89 (592)
                      .+.++.+..+++.....+..+.+.++++.+..+.+++.+...++..++.++.|+++||+|||+.++++.++..++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            45567778888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHH
Q 007702           90 WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLS  169 (592)
Q Consensus        90 ~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~  169 (592)
                      ++++++.+++.|++.|++.+...+....++.|++|+++|++.+++.+....+|..+++...  ....+..+||+.+++.+
T Consensus        83 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~  160 (352)
T cd06174          83 FASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLG--GLLAESLGWRWLFLILA  160 (352)
T ss_pred             HhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999985443  44445567999999888


Q ss_pred             HHHHHHHHHH
Q 007702          170 IPALLYFAFA  179 (592)
Q Consensus       170 i~~~~~~~l~  179 (592)
                      ++.++..++.
T Consensus       161 ~~~~~~~~~~  170 (352)
T cd06174         161 ILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHH
Confidence            8777655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.60  E-value=7.2e-14  Score=148.41  Aligned_cols=177  Identities=15%  Similarity=0.236  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTV-EGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~-~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      ..+.+|+-.|+.-+ ....+.+.|++.+++|++..+ .|.+.++++.++++..++.|+++||+|.|+++.++.+..++.+
T Consensus        28 ~~~~lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        28 LVLYLCFYGFMAQF-RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            33434444444444 455667888999999999998 9999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           86 LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        86 ~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      ++.++++++..+.+.|++.|++.|... ....|+..++|+++|++++++...+..+|.++++.+.-.   ....+||..+
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql---l~s~gWr~y~  182 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL---LVTLGWISYS  182 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCchhHH
Confidence            999999999999999999999999999 999999999999999999999999999999999655544   2345888765


Q ss_pred             HH--HHHHHHHHHHHHHhhccCChh
Q 007702          166 GV--LSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       166 ~i--~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      .+  .++.+.++.++.-+++|..++
T Consensus       183 ~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       183 TLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCch
Confidence            32  333444445566788885554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.58  E-value=5.7e-15  Score=166.88  Aligned_cols=180  Identities=16%  Similarity=0.175  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      +.++.+++..+..+...+.++..++.++++|++++.+.|++.+.+.++++++.++.++++||+|||+.+.++.+++++++
T Consensus        33 ~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        33 VFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            34455566778888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc---------------------------------------------------cHHHHHHHHHHHHhhhhhhhhH
Q 007702           86 LVMLWSP---------------------------------------------------NVYVLCIARLLDGFGVGLAVTL  114 (592)
Q Consensus        86 ~~~~~s~---------------------------------------------------~~~~ll~~R~l~G~~~g~~~~~  114 (592)
                      +++++.+                                                   .+..++++|+++|++.+..++.
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~  192 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPL  192 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhc
Confidence            9987753                                                   2567789999999999999999


Q ss_pred             HHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhc--CC------------------CchhHHHHHHHHHHHH
Q 007702          115 VPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLL--AS------------------PSWRLMLGVLSIPALL  174 (592)
Q Consensus       115 ~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~--~~------------------~~Wr~~f~i~~i~~~~  174 (592)
                      ..+|+.|++|+++|++..++.+....+|..+++.+.......  +.                  .+|+..|++.+++.++
T Consensus       193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l  272 (633)
T TIGR00805       193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL  272 (633)
T ss_pred             CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987665433211  10                  0388889888888777


Q ss_pred             HHHHHHhhccCC
Q 007702          175 YFAFAVFFLPES  186 (592)
Q Consensus       175 ~~~l~~~~~pEs  186 (592)
                      ..++ ++++|+.
T Consensus       273 ~~v~-l~~~p~~  283 (633)
T TIGR00805       273 TSIP-FFFFPKA  283 (633)
T ss_pred             HHHH-HHhCccc
Confidence            5544 4556654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.58  E-value=5e-14  Score=153.74  Aligned_cols=178  Identities=15%  Similarity=0.081  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      |.++..+.++.+........++..++.+.+++|++..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++
T Consensus        18 w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   97 (455)
T TIGR00892        18 WVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLG   97 (455)
T ss_pred             hHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHH
Confidence            44444444444433333445677788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccHHHHHH-HHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           85 GLVMLWSPNVYVLCI-ARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        85 ~~~~~~s~~~~~ll~-~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      +++++++++++.+++ .|++.|++.+...+....++.+++| ++|++..++.+.+..+|..+++.  ....+.+..+||+
T Consensus        98 ~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~--l~~~l~~~~gwr~  174 (455)
T TIGR00892        98 MILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAP--LNQYLFESFGWRG  174 (455)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHH--HHHHHHHHhChHH
Confidence            999999999988865 5799999998877777788889996 78999999999999998887743  3444445669999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccC
Q 007702          164 MLGVLSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pE  185 (592)
                      +|++.+++.++..++.++..|+
T Consensus       175 ~f~~~~~~~~~~~v~~~~~~~~  196 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALMRPV  196 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC
Confidence            9999888776655444444443

>TIGR00897 2A0118 polyol permease family

Probab=99.55  E-value=3.7e-13  Score=144.38  Aligned_cols=171  Identities=13%  Similarity=0.061  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH---
Q 007702           13 IGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML---   89 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~---   89 (592)
                      ++.++.........+.++.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++..++++++.   
T Consensus        20 l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~   99 (402)
T TIGR00897        20 IGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFG   99 (402)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333333333344445556688999999999999999999999999999999999999999999999988876553   


Q ss_pred             h-hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHH-HHHHHHHHHhHhcCCCchhHHHHH
Q 007702           90 W-SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGM-FLAYCMVFGMSLLASPSWRLMLGV  167 (592)
Q Consensus        90 ~-s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~-~l~~~~~~~~~~~~~~~Wr~~f~i  167 (592)
                      + .++++.+++.|++.|++.+...+....++.+.+|+++|++.+++.+....+|. .+++  .....+.+..+|+..++.
T Consensus       100 ~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~--~~~~~l~~~~g~~~~~~~  177 (402)
T TIGR00897       100 LGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGS--YYSSYAIPAFGEMNTLWS  177 (402)
T ss_pred             ccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcccccchHHHHHH
Confidence            3 35788899999999999988888888889999999999999999999988886 4553  333334455675554443


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 007702          168 LSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~pE  185 (592)
                      .....++..++..++.++
T Consensus       178 ~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       178 ALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             HHHHHHHHHHHHHhccCC
Confidence            333222223333444454

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.55  E-value=9.1e-14  Score=146.28  Aligned_cols=162  Identities=17%  Similarity=0.183  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-----CchHHH-HHHHHHHHHHHHHHHhh---c
Q 007702           22 NATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-----GRRPML-ILSSVLYFVSGLVMLWS---P   92 (592)
Q Consensus        22 ~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-----GRK~~l-i~~~~l~~i~~~~~~~s---~   92 (592)
                      ...+++..|.+.+++|++.++.+++... .+...+ .+++|+++||+     ||||.+ +.+.++.+++.+..++.   .
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            3456778899999999999999999755 444444 89999999998     899974 66777777777777776   4


Q ss_pred             cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc--------hhHH
Q 007702           93 NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS--------WRLM  164 (592)
Q Consensus        93 ~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~--------Wr~~  164 (592)
                      +++.+.+..++.+++.+...+...+++.|++|+++|++++++...+..+|.++++.+..  .+....+        ||.+
T Consensus        82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~--~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLAL--VLASPEFANTGLITLWGYI  159 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHH--HHhhhcccccccccccHHH
Confidence            56667777788888888888889999999999999999999999999999998855443  3333334        9999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCh
Q 007702          165 LGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       165 f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      |++.+++.++..++.++..||++
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCC
Confidence            99888877775555455578753

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.1e-13  Score=150.35  Aligned_cols=184  Identities=19%  Similarity=0.155  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAI-VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~-~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      +.++..++..++....+...++.+. .-+.++.+....+.+.+.+++.++++++.++++.+.||++-.+.+..+.++.++
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~  123 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGL  123 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHH
Confidence            4455566666666666665554432 225688888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh----cCCC
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL----LASP  159 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~----~~~~  159 (592)
                      .+++..+.+|++.+++.|++.|+..+..+|....+++.++.+++||..++++.....+|..++.++.++...    ....
T Consensus       124 ~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~  203 (495)
T KOG2533|consen  124 FGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLA  203 (495)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcC
Confidence            998888899999999999999999999999999999999999999999999999999999999877777433    3356


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +|||+|++.++++++..+++++++|+.|.
T Consensus       204 gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  204 GWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             CceeehhHHHHHHHHHHheEEEEecCChh
Confidence            99999999999999999999999999987

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.53  E-value=4.3e-13  Score=147.74  Aligned_cols=168  Identities=20%  Similarity=0.265  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW   90 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~   90 (592)
                      .++......+.....+..++++..++|-+ ....|+.+...++..++.++.|.++|.+|||..++.+.++..+++++++.
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            33334444455555567788999999965 66789999999999999999999999999999999999999999999999


Q ss_pred             hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           91 SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        91 s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                      ++|...++++-.+.|++.|... +....++|+.|.|.|+...++...........+  +...-.+..+.+|||.|++..+
T Consensus       128 A~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~--~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  128 AQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWIS--PLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             CCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhccc--HHHHHHhccCCCcchHHHHHHH
Confidence            9999999999999999987775 456668999999999877666554433333233  2222233446799999998888


Q ss_pred             HHHHHHHHHHhh
Q 007702          171 PALLYFAFAVFF  182 (592)
Q Consensus       171 ~~~~~~~l~~~~  182 (592)
                      ...+.+++.+++
T Consensus       205 ~~~i~~vl~~~f  216 (599)
T PF06609_consen  205 WSGIALVLIFFF  216 (599)
T ss_pred             HHHHHHHHHHHH
Confidence            776655544433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.52  E-value=2.5e-13  Score=147.22  Aligned_cols=154  Identities=21%  Similarity=0.354  Sum_probs=138.4

Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHhhhhhh
Q 007702           34 KDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP--NVYVLCIARLLDGFGVGLA  111 (592)
Q Consensus        34 ~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~--~~~~ll~~R~l~G~~~g~~  111 (592)
                      .+|+++..+.+++.+.++.|+++++++.|+++||+|-|+++.++.++.++++++..++-  +++.+++.|+++|++.|..
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~  145 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL  145 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence            46888889999999999999999999999999999999999999999999999998874  5567899999999999999


Q ss_pred             hhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          112 VTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS-PSWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       112 ~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      +|+...+.+.++|+++|++..++...+..+|.+++  +...+.+.+. .||+.+|++.++.+++..++.+++..|+|..
T Consensus       146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~--mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIIT--MPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999998888888887  4445555555 8999999999999999888877888888875

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.51  E-value=6.5e-13  Score=146.01  Aligned_cols=161  Identities=12%  Similarity=0.094  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHHHHHH
Q 007702            8 AIAATIGNFLQGWDNATIAG-AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~-~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~~i~~   85 (592)
                      ++.+++..+...+....+.+ ...++++++|++....+++.+.+.+...+..+++|+++|| +|||++++++.+++.++.
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~   95 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGY   95 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHH
Confidence            34444455555555554444 4556788999999999999999998888889999999999 999999999999999999


Q ss_pred             HHHHhhccHHH-HHHHHHHHHhhhhhhhhHHHHHHHhhcCccc--cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           86 LVMLWSPNVYV-LCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        86 ~~~~~s~~~~~-ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      ++++++++... ++++|+++|++.|...+...++++|.+|+++  |+...++...+.++|.++++  ..+..+.+..|||
T Consensus        96 ~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~--~l~g~l~~~~gw~  173 (489)
T PRK10207         96 FMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL--SLAPVIADKFGYS  173 (489)
T ss_pred             HHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH--HHHHHHHHhhChH
Confidence            99999876444 5589999999999999999999999999874  47788889999999999884  4445555667999


Q ss_pred             HHHHHHHH
Q 007702          163 LMLGVLSI  170 (592)
Q Consensus       163 ~~f~i~~i  170 (592)
                      +.|++..+
T Consensus       174 ~~F~i~~i  181 (489)
T PRK10207        174 VTYNLCGA  181 (489)
T ss_pred             HHHHHHHH
Confidence            99988644

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.50  E-value=4.9e-13  Score=144.06  Aligned_cols=173  Identities=16%  Similarity=0.159  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh--
Q 007702           13 IGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW--   90 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~--   90 (592)
                      ++.+...+......+.+|.+.++++.+..+.+++.+.+.++..+++++.|+++||+|||++++++.++..++.+..++  
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~  103 (417)
T PRK10489         24 IARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNA  103 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHH
Confidence            345556666677778888888999989999999999999999999999999999999999999988877776654432  


Q ss_pred             ---hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702           91 ---SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV  167 (592)
Q Consensus        91 ---s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i  167 (592)
                         .++++.+++.|++.|++.+...+....++.|..|+++|++..++.+....+|..+++.+.  ..+.+..+|++.|++
T Consensus       104 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~--g~l~~~~~~~~~~~~  181 (417)
T PRK10489        104 FLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALG--GLLIAAGGVAWNYGL  181 (417)
T ss_pred             HcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHH--HHHHHHHhhHHHHHH
Confidence               567889999999999999988888889999999999999999999999999998885443  333344589999887


Q ss_pred             HHHHHHHHHHHHHhhccCChh
Q 007702          168 LSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      .++..++.. +..+.+|++|+
T Consensus       182 ~~~~~~~~~-~~~~~l~~~~~  201 (417)
T PRK10489        182 AAAGTFITL-LPLLRLPALPP  201 (417)
T ss_pred             HHHHHHHHH-HHHHhCCCCCC
Confidence            776665543 44567787654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.50  E-value=6.1e-13  Score=161.29  Aligned_cols=164  Identities=12%  Similarity=0.046  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH---hhccHHHHHHH
Q 007702           26 AGAIVYIKKDLNLGT--TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML---WSPNVYVLCIA  100 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~--~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~---~s~~~~~ll~~  100 (592)
                      ..+.+.+..+++.+.  ...+++.+++.++.+++++++|+++||+|||++++++.++.+++.++..   ++++++.++++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  109 (1146)
T PRK08633         30 ILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAV  109 (1146)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence            344455666777654  4578999999999999999999999999999999999877666655444   35789999999


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC-------CCchhHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA-------SPSWRLMLGVLSIPAL  173 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~-------~~~Wr~~f~i~~i~~~  173 (592)
                      |++.|++.+...++..++++|++|+++|++++++.+.+..+|.++++.+........       ..+|++.+.+..+..+
T Consensus       110 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (1146)
T PRK08633        110 TFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVA  189 (1146)
T ss_pred             HHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999866554332210       1245555544444444


Q ss_pred             HHHHHHHhhccCChhH
Q 007702          174 LYFAFAVFFLPESPRW  189 (592)
Q Consensus       174 ~~~~l~~~~~pEsP~~  189 (592)
                      +..++..+++||+|.+
T Consensus       190 ~~~~~~~~~~~~~~~~  205 (1146)
T PRK08633        190 VLGLIFAYRLPKVPAA  205 (1146)
T ss_pred             HHHHHHHhcCcCCCCC
Confidence            4344555677888754

>TIGR00896 CynX cyanate transporter

Probab=99.49  E-value=6.1e-13  Score=139.98  Aligned_cols=149  Identities=19%  Similarity=0.309  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 007702           23 ATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARL  102 (592)
Q Consensus        23 ~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~  102 (592)
                      ..+++.+|.+.+++|++.++.+++.+++.++..++.++.|+++||+|||++++++.++..++.+.+ .+++++.+++.|+
T Consensus        17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~   95 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA   95 (355)
T ss_pred             ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999999999999999888888777 7789999999999


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHH
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPAL  173 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~  173 (592)
                      +.|++.+...+..+.++.|.+| ++|++.+++.+....+|..+++.+..........+||+.|.+.+++.+
T Consensus        96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896        96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            9999999988888888999886 689999999999888888887554332221112349999876665443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.48  E-value=3.5e-13  Score=120.54  Aligned_cols=138  Identities=31%  Similarity=0.450  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCcc
Q 007702           47 VAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSE  126 (592)
Q Consensus        47 ~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~  126 (592)
                      .+.+.++..++.++.|++.||+|||+.+..+.++..++.+...++++++.+++.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34567888999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          127 IRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       127 ~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      +|++..++.+....+|..+++..  .....+..+|++.+++.+++.++..++.+++.||+
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPL--GGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHh--HHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999888543  34445667899999888888777666666677764

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.48  E-value=1.5e-12  Score=142.86  Aligned_cols=164  Identities=9%  Similarity=0.084  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHH--cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVY-IKKD--LNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYFVS   84 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~-i~~~--~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~~i~   84 (592)
                      ..+.+..+...+....+.+.+|. +.++  +|++..+.+++.+.+.++..++++++|+++|| +|||++++++.++++++
T Consensus        13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g   92 (475)
T TIGR00924        13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLG   92 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            44445666666666666666655 4555  89999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc---cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCch
Q 007702           85 GLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI---RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSW  161 (592)
Q Consensus        85 ~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~W  161 (592)
                      .++.+++++++.++++|++.|++.|...+....++++.+|+++   |+...++.+.+.++|..+++.+  .....+..+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l--~g~l~~~~g~  170 (475)
T TIGR00924        93 HFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLL--AGVIAENYGY  170 (475)
T ss_pred             HHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHH--HHHHHHhcCh
Confidence            9999999999999999999999999999999999999999764   8889999999999999999544  4444556689


Q ss_pred             hHHHHHHHHHHHH
Q 007702          162 RLMLGVLSIPALL  174 (592)
Q Consensus       162 r~~f~i~~i~~~~  174 (592)
                      ++.|++.++..++
T Consensus       171 ~~~f~~~~~~~~~  183 (475)
T TIGR00924       171 HVGFNLAAVGMVI  183 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887755444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.46  E-value=4.6e-12  Score=135.51  Aligned_cols=176  Identities=19%  Similarity=0.189  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHH-HHHHHHHHhhHHhhhhhcCchHHHH-HHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMS-LIGATAITTCSGPISDWLGRRPMLI-LSSVLYFVSG   85 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~-~lg~~ig~~~~G~l~Dr~GRK~~li-~~~~l~~i~~   85 (592)
                      ....++.++.+.......+.++. ++++++++.++.|++.+.. .++..++.++.++ +||+|||+.++ .+.++..++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~   96 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLAC   96 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHH
Confidence            34455567777777766776654 7889999999999997765 4466666666666 99999998754 5556666777


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCcccc--chhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           86 LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIR--GRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        86 ~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~R--g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      ++.+++++++.+++.+.+.|...+...+....++.+..|++.|  +..+++.+.+.++|..++  +..+..+.+..|||.
T Consensus        97 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g--~~i~~~l~~~~gw~~  174 (393)
T PRK15011         97 TLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIG--PPLAYALAMGFSFTV  174 (393)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHh--hHHHHHHHHhcChHH
Confidence            7788899998877665555544556677778888888777655  345577888888999988  444445555679999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCh
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      +|++.++..++..++.++++||.|
T Consensus       175 ~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        175 MYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCccC
Confidence            999888887776767677788875

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.46  E-value=9.8e-13  Score=133.88  Aligned_cols=147  Identities=22%  Similarity=0.175  Sum_probs=116.3

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007702           39 GTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLY  118 (592)
Q Consensus        39 s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~  118 (592)
                      +..-.|++-+.+.++..+.++.+|.++|++|||+++++|++..+++.++.+++.|+..++++|++.|+..|-. .+.-++
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAi  144 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAI  144 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHH
Confidence            4467899999999999999999999999999999999999999999999999999977777799999988765 677899


Q ss_pred             HHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH----HHHHHHHHHHHHHHHhhccCC
Q 007702          119 ISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML----GVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       119 i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f----~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      ++|++++|.|++.++.......+|.++|+.++..........=+++|    ++..+++........+++|||
T Consensus       145 isdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  145 ISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             HHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999996655443331111112222    222233332233456789998

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.45  E-value=9.4e-12  Score=137.17  Aligned_cols=174  Identities=17%  Similarity=0.180  Sum_probs=138.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-----CchHH-HHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-----GRRPM-LILSSVLYFV   83 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-----GRK~~-li~~~~l~~i   83 (592)
                      .+.+..+..|......++.+|.+.++.|.+..+.+.+ +...+.. ++.+++|+++||+     |||+. ++++.++.++
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~   93 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLV   93 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHH
Confidence            4455566778888888899999999999998888886 3333333 6889999999999     99986 6677777777


Q ss_pred             HHHHHHhh---ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC-CC
Q 007702           84 SGLVMLWS---PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA-SP  159 (592)
Q Consensus        84 ~~~~~~~s---~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~-~~  159 (592)
                      +.+.+++.   .+++.+.+.+++.|++.+...+...+++.|++|+++|++.+++.+.+..+|.+++..+.  ..+.+ ..
T Consensus        94 ~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~--~~l~~~~~  171 (491)
T PRK11010         94 AIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLA--LWLADRYL  171 (491)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc
Confidence            77777665   47888999999999999999999999999999999999999999999999999884443  33344 46


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      +||.+|++.+++.++.++ ..+++||+|+
T Consensus       172 GWr~~f~i~a~l~ll~~l-~~~~~~e~~~  199 (491)
T PRK11010        172 GWQGMYWLMAALLIPCII-ATLLAPEPTD  199 (491)
T ss_pred             CHHHHHHHHHHHHHHHHH-HHHhcCCCcc
Confidence            999999998887766544 3445788764

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.5e-12  Score=135.01  Aligned_cols=181  Identities=19%  Similarity=0.218  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      ...+....+......+.+..+++..+.+++++++|+.+.++++++..+...+.-++.|++.||+|.|++..++.++..+.
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP   92 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIP   92 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHH
Confidence            34444555555555666777888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc---cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-
Q 007702           85 GLVMLWSP---NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-  160 (592)
Q Consensus        85 ~~~~~~s~---~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-  160 (592)
                      ++..+++.   +++++++.+++.|++.+ ..++...+++.++|++++|.++++.. .+++|..+.....  .......+ 
T Consensus        93 ~~~~~~a~~~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~--P~v~~~~g~  168 (417)
T COG2223          93 CLGLAFAVTYPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA--PLVAVAFGF  168 (417)
T ss_pred             HHHHHHHccCCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHH--HHHHHHHhh
Confidence            99999874   45699999999999754 45778889999999999999999988 7777776653332  22222334 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          161 --WRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       161 --Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                        |+....+..++.++..++.++++.+.|..
T Consensus       169 ~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~  199 (417)
T COG2223         169 LAWRNVAGIYVVALAIAAVLAWLGMNDVPEH  199 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCChhh
Confidence              99999888888888888888999888875

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.44  E-value=1.3e-11  Score=132.49  Aligned_cols=173  Identities=17%  Similarity=0.131  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-----CchH-HHHHHHHHHHHHH
Q 007702           12 TIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-----GRRP-MLILSSVLYFVSG   85 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-----GRK~-~li~~~~l~~i~~   85 (592)
                      ..-++.+|+..+.....+|.+-++.|++.++.|++..+...  .+..+++|+++||+     |||| .++++.++.+++.
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~   82 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI   82 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence            44577889999999999999999999999999999777765  68899999999999     8876 6888888888877


Q ss_pred             HHHHhh---ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC-Cch
Q 007702           86 LVMLWS---PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS-PSW  161 (592)
Q Consensus        86 ~~~~~s---~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-~~W  161 (592)
                      +..++.   .+++.+++..++.+++.+...+...+++.|++|+++|++.+++...+..+|..++..+.  ..+.+. .+|
T Consensus        83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~--~~l~~~~~gw  160 (402)
T PRK11902         83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLA--LWLADRVLGW  160 (402)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHH--HHHHhcccCH
Confidence            777776   35777888888888888888899999999999999999999999999899988884433  333343 599


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          162 RLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       162 r~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      |.+|++.++..++..+ ..+++||+++.
T Consensus       161 ~~~f~i~a~~~l~~~l-~~~~~~e~~~~  187 (402)
T PRK11902        161 GNTYLLMAGLMLAGAL-TTLWAPEPEVP  187 (402)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhcCCCccc
Confidence            9999988887766443 45677887553

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=4.7e-13  Score=136.95  Aligned_cols=149  Identities=21%  Similarity=0.248  Sum_probs=137.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHH
Q 007702           36 LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLV  115 (592)
Q Consensus        36 ~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~  115 (592)
                      .+-++++.|++.++..+..++..++.|.+.||+|+|-+++++.+++.++++++++.+++++++++|.++|++.+...+..
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            44456899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCccc-cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          116 PLYISETAPSEI-RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       116 ~~~i~E~~p~~~-Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      .+++++.+|.+. |++.+|....+.++|.+++  +.+++.+.+..|.+.+|.+.+++.++-..+.++.++.+
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvg--PpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~  250 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVG--PPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPT  250 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceec--CCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcc
Confidence            999999999875 7999999999999999999  77788888888999999999999998887777777654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.39  E-value=3.1e-11  Score=137.63  Aligned_cols=139  Identities=16%  Similarity=0.029  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q 007702           44 GLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA  123 (592)
Q Consensus        44 gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~  123 (592)
                      .+...+..++.+++.+++|+++||+|||++++++.++.++++++.+++++...+++.+++.|++.++..++..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34456677889999999999999999999999999999999999999988888888899999988888899999999999


Q ss_pred             CccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       124 p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      |++.|++++++.+....+|.++++.+.....  . .+...+|++.+++.++.+++ .+++||+
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~--~-~~~~~pf~i~a~~lll~~ll-~~~LPET  736 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFV--G-ITKAAPILFASAALACGGLL-ALKLPDT  736 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-hhhHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            9999999999999999999999965543222  1 13466777777766664444 4567998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.37  E-value=2.6e-11  Score=129.19  Aligned_cols=158  Identities=14%  Similarity=0.038  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHH-HHHHHH-HHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSV-LYFVSG-LVM   88 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~-l~~i~~-~~~   88 (592)
                      +++.++......++..|.+|.+.+++|++..+.+++.+++.++..+++++.|+++||+||++....... ...+.. +..
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~   88 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS   88 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            556777777888889999999999999999999999999999999999999999999998554322221 111222 233


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      .++++++.+++.|++.|.+.+...|....+..+.  .++|++..+......++|..+++  .....+.+..+||..|++.
T Consensus        89 ~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~--~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        89 AGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGS--ALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHH--HHHHHHHHHcChhHHHHHH
Confidence            4678999999999999998888888887777664  57789999999999999999884  4444555667999999877


Q ss_pred             HHHH
Q 007702          169 SIPA  172 (592)
Q Consensus       169 ~i~~  172 (592)
                      .+..
T Consensus       165 ~~~~  168 (382)
T TIGR00902       165 TAGL  168 (382)
T ss_pred             HHHH
Confidence            6553

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.35  E-value=4.5e-11  Score=131.99  Aligned_cols=163  Identities=14%  Similarity=0.168  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIAG-AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYFVSGLV   87 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~-~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~~i~~~~   87 (592)
                      .+++..+...+....+.. ...++.+++|++..+.+++.+.+........+++|+++|| +|||++++++.+++.++.++
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l  104 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYAL  104 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            334444445454444444 4456778999999888888888776666667899999999 59999999999999999988


Q ss_pred             HHhhc-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc--cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHH
Q 007702           88 MLWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLM  164 (592)
Q Consensus        88 ~~~s~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~  164 (592)
                      +++++ +.+.++++|++.|++.|...+....+++|++|++.  |....++.+.+.++|.++++.+  ...+.+..+||+.
T Consensus       105 ~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i--~g~l~~~~g~~~~  182 (500)
T PRK09584        105 VAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA--TPWLAAKYGWSVA  182 (500)
T ss_pred             HHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH--HHHHHHhhCHHHH
Confidence            88874 56677788999999999988988899999998654  4457778888999999988544  4444566799999


Q ss_pred             HHHHHHHHHH
Q 007702          165 LGVLSIPALL  174 (592)
Q Consensus       165 f~i~~i~~~~  174 (592)
                      |++.++..++
T Consensus       183 F~i~~i~~~i  192 (500)
T PRK09584        183 FALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHH
Confidence            9887654443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.35  E-value=3e-11  Score=128.64  Aligned_cols=166  Identities=13%  Similarity=0.039  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCch----HHHHHHHHHHHHHHHHHH
Q 007702           14 GNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRR----PMLILSSVLYFVSGLVML   89 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK----~~li~~~~l~~i~~~~~~   89 (592)
                      .++......+.+.|.+|.+.++++.+..+.|++.+++.++..+++++.|+++||+|||    +.+.+..++.  ......
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~   89 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWF   89 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHH
Confidence            3566667778888899988899999999999999999999999999999999999994    3333222222  222334


Q ss_pred             hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHH
Q 007702           90 WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLS  169 (592)
Q Consensus        90 ~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~  169 (592)
                      .+++++.+++.|++.|++.+...+...+++.++  .++|++..+..+....+|..++  +..+..+.+..+||.+|++.+
T Consensus        90 ~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~ig--p~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128         90 GAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIG--SALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             hcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHH--HHHHHHHHHHcChhHHHHHHH
Confidence            468899999999999999888888887777776  4568888888888888998888  444555566679999998777


Q ss_pred             HHHHHHHHHHHhhccCC
Q 007702          170 IPALLYFAFAVFFLPES  186 (592)
Q Consensus       170 i~~~~~~~l~~~~~pEs  186 (592)
                      +..++.. +..++.||.
T Consensus       166 ~~~~~~~-~~~~~~~~~  181 (382)
T PRK11128        166 AGVASML-LGQLLRPTI  181 (382)
T ss_pred             HHHHHHH-HHHHccCCC
Confidence            6554433 334455664

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.33  E-value=1.2e-10  Score=124.62  Aligned_cols=153  Identities=16%  Similarity=0.195  Sum_probs=122.1

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q 007702           29 IVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGV  108 (592)
Q Consensus        29 ~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~  108 (592)
                      ..+++++++++..+.+++.+...++.+++.++.|+++||+|||+.+..+.+...+......+.++.+.+++.+++.+++.
T Consensus       240 p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  319 (393)
T PRK15011        240 PLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYI  319 (393)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            34567889999988999888888888889999999999999999888877766665555556778888888999999988


Q ss_pred             hhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccC
Q 007702          109 GLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       109 g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pE  185 (592)
                      |...+..+.+..|.+|. +||..+++.+....+|..+++.+  .....+..+|+.+|++..++.++.+ +..+++||
T Consensus       320 g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l--~G~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  392 (393)
T PRK15011        320 GILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSL--AGIVAEIWNYHAVFWFALVMIIATL-FCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence            88888888899999986 59999999888888898888544  3445556799999988777776644 44556565

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.33  E-value=3.6e-11  Score=145.85  Aligned_cols=176  Identities=14%  Similarity=0.111  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCc-hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHH---HHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIV-YIKKDLNLGT-TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLIL---SSVLYFV   83 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~-~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~---~~~l~~i   83 (592)
                      +...++.+..++....+..... .+....+.+. ...++..+++.+..++.++++|.++||+|||+++..   ..++..+
T Consensus        18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~   97 (1140)
T PRK06814         18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA   97 (1140)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence            3334444544544444333333 2333443333 457888899999999999999999999999997643   2222233


Q ss_pred             HHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           84 SGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        84 ~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      ..+...+.+++++++++|+++|++.+...|+..+++.+++|+++|++++++.+.+..+|.++++.+  ++.+....+|++
T Consensus        98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l--~g~l~~~~~~~~  175 (1140)
T PRK06814         98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII--GGLATISGNFVI  175 (1140)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH--HHHHHhccccHH
Confidence            333333458999999999999999999999999999999999999999999999999999999544  444555679999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCh
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      .|++..+..++ .++..+++|+++
T Consensus       176 ~~~~~~~~~~~-~~~~~~~~~~~~  198 (1140)
T PRK06814        176 LVALLMGIAVL-GWLASLFIPKTG  198 (1140)
T ss_pred             HHHHHHHHHHH-HHHHHhhCCCCC
Confidence            98444444443 444556677654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.33  E-value=6.1e-11  Score=128.03  Aligned_cols=146  Identities=13%  Similarity=0.159  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc----cHHHHHHHHHHHHhhhhhhhhHHH
Q 007702           41 TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP----NVYVLCIARLLDGFGVGLAVTLVP  116 (592)
Q Consensus        41 ~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~----~~~~ll~~R~l~G~~~g~~~~~~~  116 (592)
                      ...+...++..++.+++.++.|+++||+|||++++++.++.+++..+.....    +++.+++.+++.|++.+...+...
T Consensus       251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~  330 (418)
T TIGR00889       251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS  330 (418)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999888876666532    246677889999999999889999


Q ss_pred             HHHHhhcCccccchhhHHHH-HHHhhHHHHHHHHHHHhH-hcCC---CchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          117 LYISETAPSEIRGRLNTLPQ-FTGSGGMFLAYCMVFGMS-LLAS---PSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       117 ~~i~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~-~~~~---~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      .+++|.+|++.||+..++.+ +...+|..+++.+.-... ....   .+|+..|.+.+++.++..++.++++||+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999997 567888888854443222 1111   4799999998888888888888899987

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.32  E-value=5.2e-11  Score=128.48  Aligned_cols=149  Identities=19%  Similarity=0.203  Sum_probs=122.9

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHH
Q 007702           36 LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLV  115 (592)
Q Consensus        36 ~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~  115 (592)
                      .+.+....+++.++..++..++.+++|+++||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++.+...+..
T Consensus       257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566778999999999999999999999999999999999999999988888889999999999999999998888888


Q ss_pred             HHHHHhhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          116 PLYISETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       116 ~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      ..++.|.+|++.|+...+. .++...+|..+++..  .+.+.+..||+.+|.+.+++.++..++.++.+++.
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~--~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL--AGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH--HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8999999999999887554 566677888887433  44555666899999988887776665655555544

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.32  E-value=1.1e-10  Score=127.31  Aligned_cols=162  Identities=15%  Similarity=0.131  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i~~~~~   88 (592)
                      +++..+...+....+...+| ++.+++|++..+.+.+.+.+.+...++++++|+++||+ |||++++++.++..++.++.
T Consensus        14 l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll   93 (493)
T PRK15462         14 VVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL   93 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444 56778999999999999999999999999999999999 99999999999999998777


Q ss_pred             Hhhc-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCcc--ccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           89 LWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSE--IRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        89 ~~s~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      ++.+ +...+.++..+.+++.|...+..+++++|.+|++  .|....++.....++|.++++.+  ...+.+..+|++.|
T Consensus        94 ~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l--~g~L~~~~Gw~~~F  171 (493)
T PRK15462         94 GASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA--CGYAQEEYSWAMGF  171 (493)
T ss_pred             HHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH--HHHHHhhhChHHHH
Confidence            6543 2233444444555667777777788999999986  68889999999999999998544  44555667999999


Q ss_pred             HHHHHHHHH
Q 007702          166 GVLSIPALL  174 (592)
Q Consensus       166 ~i~~i~~~~  174 (592)
                      .+.++..++
T Consensus       172 ~iaaigm~l  180 (493)
T PRK15462        172 GLAAVGMIA  180 (493)
T ss_pred             HHHHHHHHH
Confidence            876654433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.32  E-value=1.4e-10  Score=124.07  Aligned_cols=174  Identities=18%  Similarity=0.122  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      .+...+++.......+.+.+|. +.+++|.+..+.+++.+++.++..++.++.|+++||+|||+.++.+.+..+++....
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   85 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPF   85 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3344555555656666666654 567899999999999999999999999999999999999999998777665544322


Q ss_pred             ---Hhhc-----cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           89 ---LWSP-----NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        89 ---~~s~-----~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                         .+++     .+..+++.+++.|++.+...+....+..+..+.  ++...+.......+|..+++.+.  .... ..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~--g~l~-~~~  160 (396)
T TIGR00882        86 FIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIA--GILF-SID  160 (396)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHH--hhhh-ccC
Confidence               1222     234456678888888888888888887776443  34455556666677777775442  3222 359


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      ||.+|++.+++.++..++.++..||+|.
T Consensus       161 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (396)
T TIGR00882       161 PQIVFWLGSGFALILMLLLMFAKPKAPS  188 (396)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            9999998888877766555555666543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.31  E-value=7.9e-11  Score=121.57  Aligned_cols=182  Identities=19%  Similarity=0.135  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVS   84 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~   84 (592)
                      .+..+.++.-.++.|+......+.+|.+++.|+++..+.+++...++.|+.+++++.|++.+|+|+|+.++++..+++++
T Consensus        12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34566777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH---hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhc-----
Q 007702           85 GLVML---WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLL-----  156 (592)
Q Consensus        85 ~~~~~---~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~-----  156 (592)
                      ++++.   ...++..++++-++.|.|.|...+.+..|++.+.|++.-..-+++.|.+..+|..+++.+.-.....     
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            99885   5578999999999999999999999999999999998888899999999999999997665444331     


Q ss_pred             ------------CCCchhHHHHHHHHHHHHHHHHHH-hhccCC
Q 007702          157 ------------ASPSWRLMLGVLSIPALLYFAFAV-FFLPES  186 (592)
Q Consensus       157 ------------~~~~Wr~~f~i~~i~~~~~~~l~~-~~~pEs  186 (592)
                                  ....|+.+|...+...+++.+... .-.|+.
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~  214 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDL  214 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcC
Confidence                        022488888776666555443332 234554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.29  E-value=1.8e-10  Score=119.52  Aligned_cols=163  Identities=28%  Similarity=0.355  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchH-HHHHHHHHHHHHHHHHHhh
Q 007702           14 GNFLQGWDNATIAGAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRP-MLILSSVLYFVSGLVMLWS   91 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~-~li~~~~l~~i~~~~~~~s   91 (592)
                      ..+........+....+.+.++ ++.+..+.+++.+...++..++.++.+++.||+|||+ .+.++.++..++.+...+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  262 (352)
T cd06174         183 AFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA  262 (352)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            3444444445555555555554 4889999999999999999999999999999999999 9999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHH
Q 007702           92 PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIP  171 (592)
Q Consensus        92 ~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~  171 (592)
                      ++.+.+.+..++.|++.+...+....++.|..|+++|++..++.+....+|..+++  .......+..+|+..+.+.+++
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i~g~l~~~~~~~~~~~~~~~~  340 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP--LLAGLLLDTGGYGGVFLILAAL  340 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcccCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998884  4445555677999999988888


Q ss_pred             HHHHHHH
Q 007702          172 ALLYFAF  178 (592)
Q Consensus       172 ~~~~~~l  178 (592)
                      .++..++
T Consensus       341 ~~i~~i~  347 (352)
T cd06174         341 ALLAALL  347 (352)
T ss_pred             HHHHHHH
Confidence            7775544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.27  E-value=3e-10  Score=124.43  Aligned_cols=162  Identities=16%  Similarity=0.083  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh--cc-H-HHHHHH
Q 007702           25 IAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS--PN-V-YVLCIA  100 (592)
Q Consensus        25 ~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s--~~-~-~~ll~~  100 (592)
                      .....|.+.+++|.+.....+......++.+++.++.++++||+|||+.++.+.++.+++.++....  ++ . ...+++
T Consensus       290 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~  369 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS  369 (479)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            3445577778889887767777777888889999999999999999999999999988887776543  11 1 122223


Q ss_pred             HHHHHhhhhh-hhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHH----hHhcCCCchhHHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGL-AVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFG----MSLLASPSWRLMLGVLSIPALLY  175 (592)
Q Consensus       101 R~l~G~~~g~-~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~~~~~~~Wr~~f~i~~i~~~~~  175 (592)
                      -++.+++.+. ..+..+.+++|.+|+++|+..+++.+....+|.++++.....    ....+..+|+..|++.++..++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (479)
T PRK10077        370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA  449 (479)
T ss_pred             HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence            3344444433 236678999999999999999999998888888776433211    12234668888888888777777


Q ss_pred             HHHHHhhccCC
Q 007702          176 FAFAVFFLPES  186 (592)
Q Consensus       176 ~~l~~~~~pEs  186 (592)
                      +++.+++.||+
T Consensus       450 ~~~~~~~~~e~  460 (479)
T PRK10077        450 ALFMWKFVPET  460 (479)
T ss_pred             HHHHHhccccC
Confidence            77777788988

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.27  E-value=1.5e-10  Score=121.54  Aligned_cols=147  Identities=18%  Similarity=0.103  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHH
Q 007702           26 AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNV--YVLCIARLL  103 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~--~~ll~~R~l  103 (592)
                      ....+.+.++++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++..++.++..+.++.  ..+++..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (377)
T TIGR00890       225 IGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVAL  304 (377)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHH
Confidence            334455567889888889999999999999999999999999999999999999988888877776643  334566788


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHH
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALL  174 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~  174 (592)
                      .|++.|...+..+.++.|.+|+++|++..++.+....+|..+++.  ......+..+|+++|.+.+++.++
T Consensus       305 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~--~~g~l~~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       305 VFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGL--IASHALTEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             HHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHH--HHHHHHhhhchhhHHHHHHHHHHH
Confidence            888888888888899999999999999999999999999988843  344455667899999877766554

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.25  E-value=3.8e-10  Score=123.63  Aligned_cols=166  Identities=17%  Similarity=0.080  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH--H
Q 007702           11 ATIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL--V   87 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~--~   87 (592)
                      +++..+........+....| ++++++|++..+.++..+...++.+++.++.|+++||+|||+.+++...+..++..  .
T Consensus       263 ~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~  342 (467)
T PRK09556        263 LCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGV  342 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHH
Confidence            34444444444434444455 56778999999999999999999999999999999999999887766544443332  2


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhh-HHHHHHHHHHHhHhcC---------
Q 007702           88 MLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLA---------  157 (592)
Q Consensus        88 ~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~---------  157 (592)
                      ....++.+.+.+.+++.|++..........+..|.+|++.||.+.++.+....+ |..+++.+.  +...+         
T Consensus       343 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~--G~i~~~~~~g~~~~  420 (467)
T PRK09556        343 YQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGL--GMIADPTKNGTPIF  420 (467)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhH--HHHhcccccccccc
Confidence            233456666777888888655444344446777999999999999999888775 656653332  22233         


Q ss_pred             ---CCchhHHHHHHHHHHHHHHHH
Q 007702          158 ---SPSWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus       158 ---~~~Wr~~f~i~~i~~~~~~~l  178 (592)
                         ..+|+..|.+..+..++.+++
T Consensus       421 ~~~~~~~~~~f~~~~~~~~~~~~~  444 (467)
T PRK09556        421 GYTLTGWAGTFAALDIAAIGCICL  444 (467)
T ss_pred             cccccChHHHHHHHHHHHHHHHHH
Confidence               457999998876666664433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.25  E-value=9.4e-11  Score=126.79  Aligned_cols=169  Identities=16%  Similarity=0.228  Sum_probs=129.8

Q ss_pred             HHHHHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh----cCch-HHHHHHHHHHHHHHHHHHhhc
Q 007702           19 GWDNATIAG-AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW----LGRR-PMLILSSVLYFVSGLVMLWSP   92 (592)
Q Consensus        19 g~~~~~~~~-~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr----~GRK-~~li~~~~l~~i~~~~~~~s~   92 (592)
                      ......+.+ ..+++.+++|+++...|++.++..+..++..++.|+++||    +||| +.++++.++.+++.+++.+.+
T Consensus        12 ~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~   91 (437)
T TIGR00792        12 NFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTP   91 (437)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCC
Confidence            333344443 5566888999999999999999999999999999999997    6874 467778888888888777765


Q ss_pred             c------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhc-CccccchhhHHHHHHHhhHHHHHHHHHHHhH--h---cCCCc
Q 007702           93 N------VYVLCIARLLDGFGVGLAVTLVPLYISETA-PSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS--L---LASPS  160 (592)
Q Consensus        93 ~------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~--~---~~~~~  160 (592)
                      +      ...+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..++........  .   .+..+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g  171 (437)
T TIGR00792        92 DFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG  171 (437)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence            3      456677788888888877777778888987 4688999999988888888766644332221  1   13568


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      ||+++.+.+++.++..++.+++.||.|
T Consensus       172 ~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       172 WFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            999999988888877777777888875

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.25  E-value=5.1e-10  Score=119.67  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 007702           25 IAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLD  104 (592)
Q Consensus        25 ~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~  104 (592)
                      .....+.+..+.+.+  ..++..+.+.++.+++.++.|++.||+|||+.+..+.++.+++.++..+.++.+.+++..++.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALT  312 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            333444444455653  446667788889999999999999999999999999888888888888888888888899999


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLP  184 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~p  184 (592)
                      |++.+...+.....+.|.+|++.||+..++.+....+|..+++.+  .....+..+|+..|++.+++.++.+++.+++.+
T Consensus       313 G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~--~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        313 GFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL--AGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999998888888888999999999999999999888888776433  334445668999998888777765555444433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.24  E-value=4.6e-10  Score=121.98  Aligned_cols=175  Identities=13%  Similarity=0.106  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhh----hcCchHHHHHH-HHHHHHHHHHH
Q 007702           14 GNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD----WLGRRPMLILS-SVLYFVSGLVM   88 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~D----r~GRK~~li~~-~~l~~i~~~~~   88 (592)
                      ..+..-+......+.++.+.+++|.+....+++..+..+..++.+++.|.++|    |+|||+++++. .+..+++.+++
T Consensus        12 ~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll   91 (477)
T TIGR01301        12 VAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILI   91 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence            33333444455555666677899999999999999999999999999999999    59999999875 55666666777


Q ss_pred             HhhccHH-----------------HHHHHHHHHHhhhhhhhhHHHHHHHhhcCcccc--chhhHHHHHHHhhHHHHHHHH
Q 007702           89 LWSPNVY-----------------VLCIARLLDGFGVGLAVTLVPLYISETAPSEIR--GRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus        89 ~~s~~~~-----------------~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~R--g~~~~~~~~~~~~G~~l~~~~  149 (592)
                      ++++++.                 .++++-.+..++.....+...++++|.+|+++|  +.+.++.+.+..+|.++++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        92 GFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             HhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766542                 223333344557777778888999999999876  578898889999999998776


Q ss_pred             HHHhHhc-------C------CCchhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          150 VFGMSLL-------A------SPSWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       150 ~~~~~~~-------~------~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      .......       .      ..+.|..|++.++..++..++..+..+|.|.
T Consensus       172 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       172 GAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             HHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence            5432111       0      1267999999888888888888889999764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.24  E-value=6.3e-10  Score=119.20  Aligned_cols=153  Identities=18%  Similarity=0.085  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLL  103 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l  103 (592)
                      .+....|.+.++.|.+....+++.+.+.++.+++.++.|+++||+|||+.+.++.+...++.++..+.++.+.+.+.-++
T Consensus       238 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            33445566777789999999999999999999999999999999999999998877777777777777888778888888


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC-CchhHHHHHHHHHHHHHHHH
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS-PSWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~-~~Wr~~f~i~~i~~~~~~~l  178 (592)
                      .|++.+...+..+.++.|.+|++.||+..++.+....+|..+++.+  ...+.+. .+|...+++.....++.+++
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~--~g~l~~~~~~~~~~~~~~~~~~~~~~~~  391 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL--AGQLLALGRSTVGVIGASIPVILVAALA  391 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh--HhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence            9998888888889999999999999999999999999999888444  3333333 35666665555555443333

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=2.5e-10  Score=123.71  Aligned_cols=164  Identities=18%  Similarity=0.091  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh-----hc----
Q 007702           22 NATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW-----SP----   92 (592)
Q Consensus        22 ~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~-----s~----   92 (592)
                      ...+....|++.+++|.+....++......++.+++.++.|+++||+|||+.+.++.++.+++.++..+     .+    
T Consensus       300 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (481)
T TIGR00879       300 INAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK  379 (481)
T ss_pred             CeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            334445667788889998888889999999999999999999999999999999998887777666652     12    


Q ss_pred             --cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           93 --NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        93 --~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                        +...+....++.++......+....++.|.+|++.|+..+++.+....+|.++++.+  .....+..+|+++|++.++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~--~~~~~~~~~~~~~f~~~~~  457 (481)
T TIGR00879       380 SSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL--FPTMLESIGVGGVFIFFGG  457 (481)
T ss_pred             chhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCccceehhHHH
Confidence              222333333333322223345666788999999999999999999999998887433  3344455689999988888


Q ss_pred             HHHHHHHHHHhhccCCh
Q 007702          171 PALLYFAFAVFFLPESP  187 (592)
Q Consensus       171 ~~~~~~~l~~~~~pEsP  187 (592)
                      ++++.+++.+++.||++
T Consensus       458 ~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       458 LNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHHHHHHHHheecccCC
Confidence            88877777777788873

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=99.20  E-value=8.8e-10  Score=117.62  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLL  103 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l  103 (592)
                      .+....+.+.++.+.+  ..++..+.+.++.+++.++.|++.||+|||+.+..+.++.+++.++..+.++.+.+++..++
T Consensus       234 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        234 VIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            3334444444556654  34566677788888999999999999999999999999988888888888888888889999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      .|++.+...+.....+.|.+|+++||+..++.+....+|..+++  .......+..+|+..|.+.+++.++..++.+++.
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~--~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSG--PLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            99999988888888999999999999999999999999988884  3444555667899999988887777665554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.17  E-value=1.4e-09  Score=116.41  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Q 007702           43 EGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISET  122 (592)
Q Consensus        43 ~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~  122 (592)
                      .+.+.++..++..++.++.|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45666777888889999999999999999999999888888887777788888888999999999999999999999999


Q ss_pred             cCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 007702          123 APSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       123 ~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      .|++.||+..++.+....+|..+++  .......+..+|+.+|++.+++.++..++.++..
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp--~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGP--LMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhH--HHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998899998884  4445556677899999988888777665554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.17  E-value=2.1e-09  Score=113.41  Aligned_cols=151  Identities=17%  Similarity=0.244  Sum_probs=120.1

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVG  109 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g  109 (592)
                      .++.+++|.+..+.+++.+...+...++.++.|++.||+|||+++.++.++..+..+...+.++.+.+++.+++.|++.|
T Consensus       224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       224 LLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667899999888988888777778888999999999999999988877766666666667788888888999999999


Q ss_pred             hhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 007702          110 LAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLP  184 (592)
Q Consensus       110 ~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~p  184 (592)
                      ...+....++.|..|.+ |+..+++.+....+|..+++.  ......+..+|+..|++.+++.++..++ .++++
T Consensus       304 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~--~~g~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~  374 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGS--VGGILAERWSYHAVYWFAIVMLIVALFC-LLLIK  374 (375)
T ss_pred             HHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHH--HHHHHHHhccchhHHHHHHHHHHHHHHH-Hheec
Confidence            88888889999999864 669999998888888888843  3344445668999998888777664443 44444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.17  E-value=1.9e-09  Score=116.40  Aligned_cols=170  Identities=19%  Similarity=0.156  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH--
Q 007702           13 IGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML--   89 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~--   89 (592)
                      +.++..........+.++ ++++++|++..+.|++.+++.++..+++++.|+++||+|||++++++..+..++.....  
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~   96 (420)
T PRK09528         17 LFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIY   96 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444455444 56677999999999999999999999999999999999999999887666554433221  


Q ss_pred             -hhc-----cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           90 -WSP-----NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        90 -~s~-----~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                       .++     .+...++++++.|.+.....+....+..+.  .+.+|...+..+....+|..+++.+.  ..+. ..+|++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~--g~l~-~~~~~~  171 (420)
T PRK09528         97 VFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIA--GILF-NINPQI  171 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHH--HHHH-hcCchH
Confidence             111     111122233333333333333333333222  24567777777777788888775443  2222 248999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCCh
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      +|++.+++.++.+++.++..||.|
T Consensus       172 ~f~~~~~~~~~~~~~~~~~~~~~~  195 (420)
T PRK09528        172 NFWLGSGSALILLVLLFFAKPDAP  195 (420)
T ss_pred             hHHHHHHHHHHHHHHHhccccccc
Confidence            998888777765555545555543

>PRK09952 shikimate transporter; Provisional

Probab=99.16  E-value=4e-09  Score=114.59  Aligned_cols=157  Identities=12%  Similarity=0.119  Sum_probs=108.9

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh---h-ccHHHHHHHHHHH
Q 007702           29 IVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW---S-PNVYVLCIARLLD  104 (592)
Q Consensus        29 ~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~---s-~~~~~ll~~R~l~  104 (592)
                      .+++++++|.+......+.....+..+++.++.|+++||+|||++++++.++.+++.+....   . ++.+.+++..++.
T Consensus       274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  353 (438)
T PRK09952        274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA  353 (438)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            34567788888765555555666677888899999999999999999887766555433322   2 2344445566777


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHH-HHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQ-FTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      +++.+...+..+++++|.+|++.|+...++.. ++..+|..+++.+..........+|+.++.+..++.++.++. .+.+
T Consensus       354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~  432 (438)
T PRK09952        354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHc
Confidence            88888888888999999999999998888754 344467666644433322222346888887777777665444 4556


Q ss_pred             cCC
Q 007702          184 PES  186 (592)
Q Consensus       184 pEs  186 (592)
                      +|+
T Consensus       433 ~~~  435 (438)
T PRK09952        433 KDN  435 (438)
T ss_pred             ccc
Confidence            765

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.16  E-value=1.2e-09  Score=117.59  Aligned_cols=158  Identities=17%  Similarity=0.119  Sum_probs=131.3

Q ss_pred             HHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 007702           27 GAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDG  105 (592)
Q Consensus        27 ~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G  105 (592)
                      ...|.+.++ +|.+....+++.+...++.+++.++.+++.||.++++.+..+.++.+++.++..+.++++.++++.++.|
T Consensus       244 ~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (417)
T PRK10489        244 VLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFG  323 (417)
T ss_pred             HhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence            344544444 8999999999999999999999999999999988888888888888888888888888888888899999


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccC
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pE  185 (592)
                      ++.+...+....++.|.+|++.||+.+++......+|..+++  ...+.+.+..+++..+.+.+++.++..++....+|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~--~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  401 (417)
T PRK10489        324 YLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA--ALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE  401 (417)
T ss_pred             HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH--HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence            998888788888999999999999999999988888988884  444455566788888887777777666666777787


Q ss_pred             C
Q 007702          186 S  186 (592)
Q Consensus       186 s  186 (592)
                      .
T Consensus       402 ~  402 (417)
T PRK10489        402 L  402 (417)
T ss_pred             c
Confidence            6

>PRK03545 putative arabinose transporter; Provisional

Probab=99.14  E-value=4.8e-09  Score=111.94  Aligned_cols=155  Identities=11%  Similarity=0.042  Sum_probs=120.3

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH-HHHHhhccHHHHHHHHHHHH
Q 007702           27 GAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG-LVMLWSPNVYVLCIARLLDG  105 (592)
Q Consensus        27 ~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~-~~~~~s~~~~~ll~~R~l~G  105 (592)
                      ...+++.+++|.+....+++.+...++.+++.++.|+++||+|||+.++ +..+..++. ++..+.++.+.+.+..++.|
T Consensus       227 ~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        227 YIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            3445667778999999999999999999999999999999999887544 444444433 33455677888888888999


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccC
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pE  185 (592)
                      ++.+...+....++.+..| +.|++++++......+|..++  +.......+..+++..|++.+++.++.+++.++....
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G--~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  382 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAG--ALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFRR  382 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHccc
Confidence            9887777777788888877 588999999888888888888  4445666678899999998888887766665555543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.13  E-value=2e-09  Score=117.55  Aligned_cols=151  Identities=9%  Similarity=0.023  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc--CchHHHHHH--HHHHHHHHHHHHhhccHHHHHH
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--GRRPMLILS--SVLYFVSGLVMLWSPNVYVLCI   99 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~--GRK~~li~~--~~l~~i~~~~~~~s~~~~~ll~   99 (592)
                      .....++.+.++++.+..+.+++.++..++.+++.++.|.++||.  ++|+..+++  .++.+++.++..++++++.+++
T Consensus       259 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i  338 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVI  338 (455)
T ss_pred             chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            333444555567899999999999999999999999999999973  344434333  3334455555667788888999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC-chhHHHHHHHHHHHHHH
Q 007702          100 ARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGVLSIPALLYF  176 (592)
Q Consensus       100 ~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~-~Wr~~f~i~~i~~~~~~  176 (592)
                      .+++.|++.+...+....++.|.+|++++|+..++.+....+|..+++  ...+...+.. +|+..|++.+++.++..
T Consensus       339 ~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp--~i~G~l~~~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       339 YCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGP--PLAGRLVDATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             HHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccc--cceeeeehhcCCcchHHHHhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999984  4444444444 69999988877665533

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.11  E-value=1.9e-09  Score=119.18  Aligned_cols=158  Identities=14%  Similarity=0.128  Sum_probs=100.7

Q ss_pred             HHHHHHHHcCCCchHHH------------HHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc---
Q 007702           28 AIVYIKKDLNLGTTVEG------------LVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP---   92 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~g------------li~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~---   92 (592)
                      ..|.+.++.|.+....+            ....+..++.+++.+++++++||+|||+.++++.++.+++.++.++..   
T Consensus       310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~  389 (502)
T TIGR00887       310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL  389 (502)
T ss_pred             ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35666677777543211            123344556777889999999999999999988888777665555431   


Q ss_pred             -cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC--------CCchhH
Q 007702           93 -NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA--------SPSWRL  163 (592)
Q Consensus        93 -~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~--------~~~Wr~  163 (592)
                       +...+.+.-+...++.....+..+.+.+|.+|++.|++..++.+....+|.++++.........+        ..++..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  469 (502)
T TIGR00887       390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH  469 (502)
T ss_pred             chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence             11111111111222222234566788899999999999999999999999888754332221111        134556


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCC
Q 007702          164 MLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      .|++.+++.++..+ ..+++||+
T Consensus       470 ~~~i~~~~~~~~~i-~~~~lpEt  491 (502)
T TIGR00887       470 VLEIFALFMFLGIL-FTLLIPET  491 (502)
T ss_pred             HHHHHHHHHHHHHH-HheEeccC
Confidence            77777777666544 45788998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.10  E-value=4.3e-10  Score=123.52  Aligned_cols=179  Identities=13%  Similarity=0.128  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL   86 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~   86 (592)
                      +++...+..+...--...++.+.+.+.++|+.+..+.+|+.++......+.+++.+.+.||+|.|++.+++.++..++.+
T Consensus        47 V~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~  126 (509)
T KOG2504|consen   47 VVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLL  126 (509)
T ss_pred             eeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHH
Confidence            33444444433333344455677889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccHHHHHHH-HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           87 VMLWSPNVYVLCIA-RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        87 ~~~~s~~~~~ll~~-R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      +..|+++++++++. -++.|+|.|+.+....+.+..+| .++|+.++++...+..+|.++-  +...-.+.+..|||+.+
T Consensus       127 lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~--~~l~~~l~~~~G~r~~~  203 (509)
T KOG2504|consen  127 LSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVF--PPLLKYLLSKYGWRGAL  203 (509)
T ss_pred             HHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeH--HHHHHHHHHHhCcHHHH
Confidence            99999999887765 68899999999988888888665 5679999999988888888765  33344556778999999


Q ss_pred             HHHHHHHHHHHHHHHhhccCChh
Q 007702          166 GVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       166 ~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      ++.+.+.+-.++......|.+|.
T Consensus       204 l~~~~~~l~~~~~~~~~rp~~~~  226 (509)
T KOG2504|consen  204 LIFGGISLNVLVAGALLRPLSPP  226 (509)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcC
Confidence            99888887766666666665544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.10  E-value=5.4e-09  Score=112.91  Aligned_cols=168  Identities=15%  Similarity=0.035  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCc-hHHHHHHHHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATI-AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGR-RPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~-~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GR-K~~li~~~~l~~i~~~~~   88 (592)
                      +++..|.+....++. .+..+++.+++|++..+.|++.+++.++..+++++.|.++||+|| |+++.++.++..++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~   86 (418)
T TIGR00889         7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA   86 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            344555555555555 445567888899999999999999999999999999999999965 778888888888888888


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHH----HH----hhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLY----IS----ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~----i~----E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                      .+.++++.+++.|++.|++.+...+.....    ..    |+.....|.+..+.      +|..+++...  ........
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~--g~l~~~~~  158 (418)
T TIGR00889        87 AQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAV--SLLDIELS  158 (418)
T ss_pred             HHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHH--HHhcccch
Confidence            888999999999999999776555544332    22    33333344444442      4455553322  22222334


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      |+ +|++.++..++.++ ..+++||+|+
T Consensus       159 ~~-~f~~~~~~~~~~~~-~~~~~~e~~~  184 (418)
T TIGR00889       159 NI-QLYITAGSSALLGV-FALTLPDIPV  184 (418)
T ss_pred             hH-HHHHHHHHHHHHHH-HHhcCCCCCC
Confidence            54 45555555555443 4567898863

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.09  E-value=9e-09  Score=109.66  Aligned_cols=151  Identities=13%  Similarity=0.128  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q 007702           22 NATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIAR  101 (592)
Q Consensus        22 ~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R  101 (592)
                      ...+....|.+.+++|.+....+++.+...++.+++.++++.+.||+|+|+.++++.++..+..+..+++++.+.+++.+
T Consensus       221 ~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q  300 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQ  300 (382)
T ss_pred             HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence            33333444544467999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHH-HHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHH
Q 007702          102 LLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQ-FTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYF  176 (592)
Q Consensus       102 ~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~  176 (592)
                      ++.|++.|...+....|+.+. |++.|++..++++ ....+|..++  ...++.+.+..++ ..|.+.++++++.+
T Consensus       301 ~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g--~~~~G~l~~~~g~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       301 ILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIF--TAFAGFIYPTLGA-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccH-HHHHHHHHHHHHHH
Confidence            999999999999999999998 9999999999876 4566777777  4445555566676 55666666665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.08  E-value=4.5e-09  Score=111.04  Aligned_cols=155  Identities=23%  Similarity=0.205  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH--HHHHh-
Q 007702           15 NFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG--LVMLW-   90 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~--~~~~~-   90 (592)
                      .+.............|. ++++++.+..+.+.+.+...++..++.++.|+++||+|||+.++...++..+..  +...+ 
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T TIGR00883       228 VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL  307 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33333434444444444 457789998899999999999999999999999999999998886655544333  22222 


Q ss_pred             -hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCc-hhHHHHH
Q 007702           91 -SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGV  167 (592)
Q Consensus        91 -s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~-Wr~~f~i  167 (592)
                       .++.+.+++..++.|++.+...+....++.|.+|++.|++..++ .++...+|..+++.  ....+.+..+ |+..++.
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~--~~g~l~~~~g~~~~~~~~  385 (394)
T TIGR00883       308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPY--IAAALVAMTGDWYAIGYY  385 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHH--HHHHHHHHcCcchhHHHH
Confidence             24667777788899999988989999999999999999999887 45556677777743  3344444445 8877655


Q ss_pred             HHHH
Q 007702          168 LSIP  171 (592)
Q Consensus       168 ~~i~  171 (592)
                      ..+.
T Consensus       386 ~~~~  389 (394)
T TIGR00883       386 LAAL  389 (394)
T ss_pred             HHHH
Confidence            5443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.08  E-value=8.6e-09  Score=110.27  Aligned_cols=162  Identities=15%  Similarity=0.071  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc
Q 007702           14 GNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP   92 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~   92 (592)
                      +.++..+....+....| ++++++|++..+.+++.+.+.++..++.++.|+++||+|||+.+....++..+..++....+
T Consensus       213 ~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~  292 (394)
T PRK03699        213 AALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD  292 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC
Confidence            33333333334444444 45577899999999999999999999999999999999999999988887777777777777


Q ss_pred             cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHH
Q 007702           93 NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPA  172 (592)
Q Consensus        93 ~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~  172 (592)
                      +.+.+.+..++.|++.+..++....+..|..|. .++...+.......+|..+++  .......+..+|+..+++.+++.
T Consensus       293 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p--~~~G~l~~~~g~~~~~~~~~~~~  369 (394)
T PRK03699        293 DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTF--VVTSPIVAHFGLQAALLTANGLY  369 (394)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHH--HHHHHHHHHhCchhhhhhhHHHH
Confidence            877777788889998888888888888888764 467777887778888888884  33444555678999998887777


Q ss_pred             HHHHHH
Q 007702          173 LLYFAF  178 (592)
Q Consensus       173 ~~~~~l  178 (592)
                      ++.+++
T Consensus       370 ~~~~~~  375 (394)
T PRK03699        370 AVVFVM  375 (394)
T ss_pred             HHHHHH
Confidence            665443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.07  E-value=2.1e-08  Score=107.00  Aligned_cols=177  Identities=11%  Similarity=-0.040  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHH--HHHHHHHHHHHHhhH-HhhhhhcCchHHHHHHHHHH-HH
Q 007702            8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLV--VAMSLIGATAITTCS-GPISDWLGRRPMLILSSVLY-FV   83 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli--~s~~~lg~~ig~~~~-G~l~Dr~GRK~~li~~~~l~-~i   83 (592)
                      .+.++..++.+|...+...+.+|.+.++.|.+.++.|++  .+...+...+.+++. ++..||+||||..++.+.+. .+
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~   82 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence            455667789999999999999999999999999999997  466677777777777 55799999999976665432 22


Q ss_pred             HHHHHH-h--hcc-HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           84 SGLVML-W--SPN-VYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        84 ~~~~~~-~--s~~-~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      ...... +  ..+ ...++..-++.++..+...+..-.+..|..+++.++...+....+..+|.+++...  ...+.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~--~~~l~~~~  160 (390)
T TIGR02718        83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAG--TLVLFGKF  160 (390)
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence            222222 2  222 33344444555566666667777788888888888888888887778888887432  33444567


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      +||.+|++.++..++..+..++..|+.
T Consensus       161 gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       161 GQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999888776555554454544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.07  E-value=8.4e-09  Score=110.41  Aligned_cols=161  Identities=19%  Similarity=0.220  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHH
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP-NVYVLCIARL  102 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~-~~~~ll~~R~  102 (592)
                      .+....|.+..++|.+....+...+.+.++.+++.++.|++.||+|||+.++++..+..++.++..+.+ +...+.  -+
T Consensus       223 ~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~  300 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AM  300 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HH
Confidence            344445555556899999999999999999999999999999999999999998888777766555433 322222  34


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcC-ccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC-chhHHHHHHHHHHHHHHHHHH
Q 007702          103 LDGFGVGLAVTLVPLYISETAP-SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~-~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      +.|++.+...+.......+.++ ++.||+..++.+....++..+++..  ...+.+.. +|...|.+..+..++..+...
T Consensus       301 l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~--~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        301 VCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWF--SGVLRSISGNYLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            6688888887877777777775 6789999999888888888777433  33333333 588888887777777666667


Q ss_pred             hhccCChh
Q 007702          181 FFLPESPR  188 (592)
Q Consensus       181 ~~~pEsP~  188 (592)
                      .+.||++.
T Consensus       379 ~~~~~~~~  386 (393)
T PRK09705        379 RFAPARFP  386 (393)
T ss_pred             Hhcccccc
Confidence            78888743

>TIGR00897 2A0118 polyol permease family

Probab=99.06  E-value=1.6e-08  Score=108.52  Aligned_cols=161  Identities=13%  Similarity=0.076  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHH-HHHHHHHHHHHHHHh-----
Q 007702           17 LQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI-LSSVLYFVSGLVMLW-----   90 (592)
Q Consensus        17 ~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li-~~~~l~~i~~~~~~~-----   90 (592)
                      .............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+...++.+...+     
T Consensus       233 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~  312 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF  312 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            33333444445567777789999988899999999999999999999999999998764 333334443333322     


Q ss_pred             hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           91 SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        91 s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                      .++++.+++..++.|++.+...+. ...+.|..| ++||+..++.+....+|..+++.  ......+..+|+.++++.++
T Consensus       313 ~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~--i~g~l~~~~g~~~~~~~~a~  388 (402)
T TIGR00897       313 GHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPA--IAVLFIGFFGAIGVVWIFAA  388 (402)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHH--HHHHHHhhcchHHHHHHHHH
Confidence            346677778888899888776554 455677655 58999999999999999988843  34455566789999998888


Q ss_pred             HHHHHHHHHHh
Q 007702          171 PALLYFAFAVF  181 (592)
Q Consensus       171 ~~~~~~~l~~~  181 (592)
                      +.++..++..|
T Consensus       389 ~~~i~~~~~~~  399 (402)
T TIGR00897       389 LYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHH
Confidence            77665554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.06  E-value=1.3e-08  Score=108.44  Aligned_cols=149  Identities=14%  Similarity=0.152  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q 007702           23 ATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARL  102 (592)
Q Consensus        23 ~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~  102 (592)
                      ......+|.+.++.+.+....+++.+...++.+++.++.|+++||+|||+++..+.++..++.+...  + ...+....+
T Consensus       217 ~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~  293 (381)
T PRK03633        217 GSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALF  293 (381)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHH
Confidence            3333455666667899888899999999999999999999999999999999988888777665443  2 223345677


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHH
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYF  176 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~  176 (592)
                      +.|++.+...|....++.|..|+++++...+..+....+|..++  +...+...++.+|++.|.+.+++.++..
T Consensus       294 l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~ig--p~~~G~l~~~~g~~~~f~~~~~~~l~~~  365 (381)
T PRK03633        294 ILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLG--PSFTAMLMQNYSDNLLFIMIASVSFIYL  365 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            77887777788888999999999888877777777888898888  4444555666789999988777776544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.05  E-value=1e-08  Score=107.95  Aligned_cols=165  Identities=20%  Similarity=0.174  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHH--HHH------HHHHHH
Q 007702           12 TIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPM--LIL------SSVLYF   82 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~--li~------~~~l~~   82 (592)
                      .+..+........+....| ++.++++.+..+.+++.+...++..++.++.|+++||+|||+.  ...      +.++..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (399)
T TIGR00893       221 ALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLS  300 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Confidence            3344444444444555455 4566789988899999999999999999999999999999961  111      111111


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-h
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-W  161 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-W  161 (592)
                      +..+.....++.+..+...++.+++.+ ..+....+++|.+|++.||+..++.+....+|..++  +.......+..+ |
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~--~~i~g~l~~~~g~~  377 (399)
T TIGR00893       301 LLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVG--PIVIGAIAATTGSF  377 (399)
T ss_pred             HHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhh--hHHhhhhccCCCch
Confidence            111111122344444444445555554 678889999999999999999999999999999888  444455556666 9


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 007702          162 RLMLGVLSIPALLYFAFA  179 (592)
Q Consensus       162 r~~f~i~~i~~~~~~~l~  179 (592)
                      +..|.+.+++.++..++.
T Consensus       378 ~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       378 AGALMVVAALALIGALSY  395 (399)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999988777766655443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.05  E-value=5.3e-09  Score=111.24  Aligned_cols=138  Identities=25%  Similarity=0.258  Sum_probs=109.1

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHHh
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL-VMLWSPNVYVLCIARLLDGF  106 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~-~~~~s~~~~~ll~~R~l~G~  106 (592)
                      ..+++.++++.+..+.+++.+...++.+++.++.|+++||+|||+.+.++.++..+..+ .....++.+.+.+..++.|+
T Consensus       261 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (405)
T TIGR00891       261 LPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQM  340 (405)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            34456778899999999999999999999999999999999999999888776644333 33345666777777788888


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-hhHHHHH
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGV  167 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-Wr~~f~i  167 (592)
                      +.+...+..+.++.|.+|++.||+..++.+....+|..+++.+  ...+.+..+ |+..+..
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~--~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII--GALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHH--HHHHHHhccccchhHHh
Confidence            7777778888999999999999999999998888998888433  444455555 7666543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.04  E-value=7.8e-09  Score=113.83  Aligned_cols=143  Identities=22%  Similarity=0.202  Sum_probs=108.4

Q ss_pred             HHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHH
Q 007702           28 AIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS--PNVYVLCIARLLD  104 (592)
Q Consensus        28 ~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s--~~~~~ll~~R~l~  104 (592)
                      .+|. +++++|.+..+.+++.+.+.++.+++.++.|+++||+|||++++++.++..+..++....  .+.+.+.+..++.
T Consensus       297 ~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (496)
T PRK03893        297 LLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQ  376 (496)
T ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            4444 446899999999999999999999999999999999999999998877766665544333  3344444555555


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHH
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPA  172 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~  172 (592)
                      ++......+..+.++.|.+|++.||+.+++.+....+|..+++  .......+..+|+..+.+.++..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp--~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        377 QMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAP--ILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             HHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHH--HHHHHHhccCChHHHHHHHHHHH
Confidence            4444344567788999999999999999999888889988884  44556667778988876555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.03  E-value=2.8e-08  Score=107.75  Aligned_cols=123  Identities=21%  Similarity=0.155  Sum_probs=87.3

Q ss_pred             HHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHH-H---HhhccHHHHH
Q 007702           24 TIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV-M---LWSPNVYVLC   98 (592)
Q Consensus        24 ~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~-~---~~s~~~~~ll   98 (592)
                      .+....|. +++.+|++..+.++....+.++..++.++.|+++||+|||++++++.++..+..+. .   ...+++..+.
T Consensus       256 ~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (434)
T PRK15075        256 LITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARML  335 (434)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            34444454 55568999888888888899999999999999999999999988765554332221 1   1234454455


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHH-HHhhHHHHH
Q 007702           99 IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQF-TGSGGMFLA  146 (592)
Q Consensus        99 ~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~-~~~~G~~l~  146 (592)
                      +..++.|++.+...+....++.|.+|++.|+...++.+. +..++..++
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~  384 (434)
T PRK15075        336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFT  384 (434)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhH
Confidence            556667777777777777899999999999999988543 333334444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.99  E-value=3.5e-08  Score=107.71  Aligned_cols=159  Identities=18%  Similarity=0.100  Sum_probs=102.5

Q ss_pred             HHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc--CchHHH-HHHHHHHHHHHHHHHh--hccHHHHH
Q 007702           25 IAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--GRRPML-ILSSVLYFVSGLVMLW--SPNVYVLC   98 (592)
Q Consensus        25 ~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~--GRK~~l-i~~~~l~~i~~~~~~~--s~~~~~ll   98 (592)
                      ....+|. +++++|++....+++.+.+.++.+++.++.|+++||+  |||+.. +....+..++.+...+  ..+.+.+.
T Consensus       272 ~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  351 (452)
T PRK11273        272 ILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDM  351 (452)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHH
Confidence            3334444 5566889888889988999999999999999999999  556533 2222333333332222  33454455


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHH-HHHHHHHhHhcCCCchhHHHHHHHHHHHHHHH
Q 007702           99 IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFL-AYCMVFGMSLLASPSWRLMLGVLSIPALLYFA  177 (592)
Q Consensus        99 ~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l-~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~  177 (592)
                      +..++.|.+..........++.|.+|++.||+..++.+....+|..+ +  +.......+..+|+..|++.++.+++.++
T Consensus       352 ~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g--~~v~g~l~~~~g~~~~f~~~~~~~~~~~~  429 (452)
T PRK11273        352 ACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA--SAIVGYTVDFFGWDGGFMVMIGGSILAVI  429 (452)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            55555565443333344567789999999999999998777666543 4  23334444566899999877776666544


Q ss_pred             HHH-hhccC
Q 007702          178 FAV-FFLPE  185 (592)
Q Consensus       178 l~~-~~~pE  185 (592)
                      +.. +..+|
T Consensus       430 ~~~~~~~~~  438 (452)
T PRK11273        430 LLIVVMIGE  438 (452)
T ss_pred             HHHHHhccc
Confidence            443 33344

>TIGR00788 fbt folate/biopterin transporter

Probab=98.98  E-value=1.5e-08  Score=110.95  Aligned_cols=176  Identities=19%  Similarity=0.134  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC-----chHHHHHHHHHH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG-----RRPMLILSSVLY   81 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G-----RK~~li~~~~l~   81 (592)
                      ...++...++.+|..........+.+++++|++.++.+.+.+...+...+-.+ +|+++|+++     ||+.++++.++.
T Consensus        27 ~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        27 VLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            34455556788888844444566678888999999999999999999998555 999999998     888888887776


Q ss_pred             H-HHHHHHHhhccHHHHH-HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHH---HHhhHHHHHHHHHHHhHhc
Q 007702           82 F-VSGLVMLWSPNVYVLC-IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQF---TGSGGMFLAYCMVFGMSLL  156 (592)
Q Consensus        82 ~-i~~~~~~~s~~~~~ll-~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~---~~~~G~~l~~~~~~~~~~~  156 (592)
                      . +.....+..++...+. +..++.+++.+....++-.+..|..+ +.+....+....   ...+|..++..  .++.+.
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~--l~G~l~  182 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSL--LGGPLL  182 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHH--HHHHHH
Confidence            3 4433344445544444 47899999999999999999999999 555444333322   23367777633  334445


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          157 ASPSWRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       157 ~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      +..+|+..|++.+++.++. ++..+++||.+
T Consensus       183 ~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       183 DKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            6678999999888887775 44567788863

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.97  E-value=6.7e-08  Score=104.79  Aligned_cols=153  Identities=16%  Similarity=0.128  Sum_probs=93.7

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH--h--hccHHHHHHHHHHHH
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML--W--SPNVYVLCIARLLDG  105 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~--~--s~~~~~ll~~R~l~G  105 (592)
                      +++.+++|.+..+.++..++..++..++.++.|+++||+|||+.++++.++.++..+...  .  .++....+..-++.+
T Consensus       268 ~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (432)
T PRK10406        268 KYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCAL  347 (432)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            446677899888888888888888889999999999999999988877665444332221  1  223332222223333


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhh-HHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLP  184 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~p  184 (592)
                      ++.+...+..+.+++|.+|++.|+...++.+....+ .....+..  .........|...+++.++..++.++ ..++++
T Consensus       348 ~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~--~~~l~~~g~~~~~~~~~~~~~~i~~~-~~~~l~  424 (432)
T PRK10406        348 LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYV--ALSLKSIGMETAFFWYVTLMAVVAFL-VSLMLH  424 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHH--HHHHHHhCCCcHHHHHHHHHHHHHHH-HHHHhh
Confidence            444445556778899999999999999997755443 12223222  22222222355555555555554433 334443


Q ss_pred             C
Q 007702          185 E  185 (592)
Q Consensus       185 E  185 (592)
                      +
T Consensus       425 ~  425 (432)
T PRK10406        425 R  425 (432)
T ss_pred             h
Confidence            3

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.97  E-value=2.1e-08  Score=121.81  Aligned_cols=158  Identities=21%  Similarity=0.225  Sum_probs=125.2

Q ss_pred             HHHHHHHHcCCCch-HHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q 007702           28 AIVYIKKDLNLGTT-VEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGF  106 (592)
Q Consensus        28 ~~~~i~~~~~~s~~-~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~  106 (592)
                      ..+++...++++.. ..+++.+...++.+++.+++|+++||+++++++.++.++.+++.++..+.++++.++++.++.|+
T Consensus       255 ~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  334 (1146)
T PRK08633        255 FPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF  334 (1146)
T ss_pred             hHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44556778999988 99999999999999999999999999999999999988888888888888888888899999999


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      +.+...+...+++.+.+|++.||+.+++.++...+|.+++..+...... ...++...|++.+++.++..++.++.+|++
T Consensus       335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (1146)
T PRK08633        335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGTLYTLLLLPDS  413 (1146)
T ss_pred             HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999988899999999999999999999998888888666444322222 234566666655555444444444445543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.96  E-value=5.8e-08  Score=106.11  Aligned_cols=169  Identities=20%  Similarity=0.167  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCch--HHHHHHHHHHHHHHHHHHh--
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRR--PMLILSSVLYFVSGLVMLW--   90 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK--~~li~~~~l~~i~~~~~~~--   90 (592)
                      .+.+|+ ..++.....+.+++++++..+...+.-+..+.+++|++++|++.||+|.|  ++++++.+++.+..+.-.+  
T Consensus       292 l~~dg~-~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~  370 (477)
T PF11700_consen  292 LYSDGV-NTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGF  370 (477)
T ss_pred             HHHHHH-HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHh
Confidence            333444 33444455667789999999999999999999999999999999999999  8999888888666555555  


Q ss_pred             ------hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHH
Q 007702           91 ------SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLM  164 (592)
Q Consensus        91 ------s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~  164 (592)
                            .++.+.+.+.-++.|+..|...+..-++.+|+.|+++.+...+++.+..-...++++.+.-...... .+-|+.
T Consensus       371 ~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-g~~r~g  449 (477)
T PF11700_consen  371 WPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-GSQRYG  449 (477)
T ss_pred             hhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhH
Confidence                  5677889999999999999999999999999999999999999999999999999966543333222 247888


Q ss_pred             HHHHHHHHHHHHHHHHhhccCC
Q 007702          165 LGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       165 f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      +....++.++.++ .+++++..
T Consensus       450 ~~~l~~lf~~gl~-ll~~v~~~  470 (477)
T PF11700_consen  450 FLFLLVLFLIGLI-LLFFVDVE  470 (477)
T ss_pred             HHHHHHHHHHHHH-HHhhccch
Confidence            7766666666443 34666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.96  E-value=5.1e-08  Score=99.64  Aligned_cols=169  Identities=21%  Similarity=0.304  Sum_probs=141.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      +.+..+.+..+.---....++|.++.+++++|++.+..|+++++..++..+.+++..+++.|+|-++.+..++++..++.
T Consensus        12 ~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~   91 (395)
T COG2807          12 LLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGI   91 (395)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33333444444444557788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           86 LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        86 ~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                      ++-... +.+.++.+-.+.|.+++......|..+-+.+|++ -+.+++++.....+|..++........... .+||..+
T Consensus        92 ~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~-~gW~~aL  168 (395)
T COG2807          92 LIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHS-GGWRGAL  168 (395)
T ss_pred             HHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-ccHHHHH
Confidence            988887 7788899999999999999999999999999875 578999999999998888855544433222 5899999


Q ss_pred             HHHHHHHHHHHH
Q 007702          166 GVLSIPALLYFA  177 (592)
Q Consensus       166 ~i~~i~~~~~~~  177 (592)
                      .+-++++++.++
T Consensus       169 ~~WAl~allAl~  180 (395)
T COG2807         169 GFWALLALLALL  180 (395)
T ss_pred             HHHHHHHHHHHH
Confidence            888888877553

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.94  E-value=4e-08  Score=106.61  Aligned_cols=169  Identities=20%  Similarity=0.105  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc--C-chHHHHHHHHHHHHHHHH--H
Q 007702           15 NFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--G-RRPMLILSSVLYFVSGLV--M   88 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~--G-RK~~li~~~~l~~i~~~~--~   88 (592)
                      .+........+...+| ++.+++|++..+.++..+.+.++..++.++.|+++||+  + ||+......+...+....  .
T Consensus       252 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~  331 (434)
T PRK11663        252 YVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL  331 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444 45577899999999999999999999999999999998  3 333322222221111111  1


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      ....+...+.+..++.|++..........+++|.+|++.||..+++.+....+|..+++.+  .....+..+|+..|++.
T Consensus       332 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~--~g~l~~~~g~~~~f~~~  409 (434)
T PRK11663        332 MPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYP--LAKVLEIWHWTGFFVVI  409 (434)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhccc--HHHHHHhcccHHHHHHH
Confidence            1123333333444444543332223345677899999999999999999999999988444  34455667899999988


Q ss_pred             HHHHHHHHHHHHhhccC
Q 007702          169 SIPALLYFAFAVFFLPE  185 (592)
Q Consensus       169 ~i~~~~~~~l~~~~~pE  185 (592)
                      +++.++..++.+++.++
T Consensus       410 ~~~~~~~~~~~~~~~~~  426 (434)
T PRK11663        410 SIAAGISALLLLPFLNA  426 (434)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            88877766555544443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.94  E-value=5.5e-08  Score=104.04  Aligned_cols=143  Identities=20%  Similarity=0.259  Sum_probs=116.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHH
Q 007702           37 NLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVP  116 (592)
Q Consensus        37 ~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~  116 (592)
                      +.+....+.+.++..+...++.++.|++.||+|||+.++++.++.++..++..++++.+.+++.+++.|++.+.......
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456678888888889999999999999999999999999999888888878888999889999999999877777777


Q ss_pred             HHHHhhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHh
Q 007702          117 LYISETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVF  181 (592)
Q Consensus       117 ~~i~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~  181 (592)
                      .++.+..|++.++...+. .+....+|..+++  ...+.+.+..||+.+|.+.+++.++..++..+
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~--~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  393 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLS--TLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF  393 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHH--HhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            788899999999887766 5677788888873  34455556668999999888887776655444

>TIGR00895 2A0115 benzoate transport

Probab=98.94  E-value=3.6e-08  Score=104.40  Aligned_cols=135  Identities=16%  Similarity=0.045  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccH
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNV   94 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~   94 (592)
                      .+.............|++.++++.+..+.+++.+...++.+++.++.|+++||+|||+.++...+..++..++....++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (398)
T TIGR00895       259 YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSP  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCH
Confidence            33434444445556678888999999999999999999999999999999999999955544444433333333335677


Q ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702           95 YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus        95 ~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      +.+++..++.|++.+...+....++.|.+|++.||+..++.+....+|..+++.+
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~  393 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPIL  393 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7778888999999999999999999999999999999999998888888887443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.94  E-value=4.7e-08  Score=108.02  Aligned_cols=160  Identities=20%  Similarity=0.215  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh--
Q 007702           13 IGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW--   90 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~--   90 (592)
                      ++.+...+...+...+.+.+..+..-++...+++.++..+..++.++++|.++||+.||++++.+.++..+..++.++  
T Consensus        17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~   96 (524)
T PF05977_consen   17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLA   96 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444555555566667889999999999999999999999999999999999999887665544433  


Q ss_pred             ---hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702           91 ---SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV  167 (592)
Q Consensus        91 ---s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i  167 (592)
                         ..+.+.+++.-++.|++.+...|...+++.|+.|+++...++++.+...++..++|+  ..++.+....|-.+.|.+
T Consensus        97 ~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGP--algG~Lva~~G~~~~f~i  174 (524)
T PF05977_consen   97 FFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGP--ALGGILVAFFGAAAAFLI  174 (524)
T ss_pred             HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHH
Confidence               247889999999999999999999999999999999999999999988888888874  334444444466677776


Q ss_pred             HHHHHHH
Q 007702          168 LSIPALL  174 (592)
Q Consensus       168 ~~i~~~~  174 (592)
                      .++..++
T Consensus       175 nalsfl~  181 (524)
T PF05977_consen  175 NALSFLI  181 (524)
T ss_pred             HHHHHHH
Confidence            6655444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10504 putative transporter; Provisional

Probab=98.94  E-value=5.6e-08  Score=106.42  Aligned_cols=133  Identities=12%  Similarity=0.154  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh---c
Q 007702           17 LQGWDNATIAGAIVYIKK-DLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS---P   92 (592)
Q Consensus        17 ~~g~~~~~~~~~~~~i~~-~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s---~   92 (592)
                      +............|++.+ .+|.+....++......++..++.++.|++.||+|||++++++.++..++.++..+.   +
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
T PRK10504        272 AGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG  351 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence            333334444455666544 589999999999998889999999999999999999999999988888877666553   3


Q ss_pred             cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702           93 NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus        93 ~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      +.+.+.+.-++.|++.+...+....++.+..|++.||...++.++...+|..+++.+
T Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i  408 (471)
T PRK10504        352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTI  408 (471)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHH
Confidence            444455667788888888888888999999999999999999998888888777444

>TIGR00898 2A0119 cation transport protein

Probab=98.93  E-value=1.7e-08  Score=111.43  Aligned_cols=135  Identities=25%  Similarity=0.260  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHhhhhhhhhHHHHHHHhhcC
Q 007702           47 VAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNV--YVLCIARLLDGFGVGLAVTLVPLYISETAP  124 (592)
Q Consensus        47 ~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~--~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p  124 (592)
                      .....+..+++.++.+++.||+|||++++++.++.+++.++..+.++.  +..++.-++.+++.+...+..+++.+|.+|
T Consensus       361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  440 (505)
T TIGR00898       361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYP  440 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            334456677888899999999999999999999988888887776543  455556677778888888889999999999


Q ss_pred             ccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          125 SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       125 ~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      ++.|+..+++.+....+|.++++.+..    ....++..++.+.++..++..+ ..+++||+
T Consensus       441 ~~~r~~~~g~~~~~~~ig~~i~p~i~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~lpet  497 (505)
T TIGR00898       441 TVVRNLGVGVCSTMARVGSIISPFLVY----LGEKWLFLPLVLFGGLALLAGI-LTLFLPET  497 (505)
T ss_pred             HHHHhhhHhHHHHHHHHHHHHHhHHHH----HHHHHHhhHHHHHHHHHHHHHH-HHHcCcCC
Confidence            999999999999999999998865543    1234566777777777666544 45678998

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.93  E-value=7.5e-08  Score=103.80  Aligned_cols=136  Identities=15%  Similarity=0.059  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHH
Q 007702           26 AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP--NVYVLCIARLL  103 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~--~~~~ll~~R~l  103 (592)
                      ...+|.+.++.|.+....+.+.+...++..++.++.|++.||+|||+.+..+.++..++.+.....+  +...+.+..+.
T Consensus       251 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFG  330 (426)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence            3345655566788888889999999999999999999999999999999988877766655544333  22222222222


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      .+++..+..+..+.++.|.+|++.||+.+++.+....+|..+++..  ...+.+..++..
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~--~g~l~~~~g~~~  388 (426)
T PRK12307        331 LMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMA--ATWLGITMGLGA  388 (426)
T ss_pred             HHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHH--HHHHHHcccHHH
Confidence            2222233345667888999999999999999888888888887444  333444555544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.93  E-value=4.8e-08  Score=105.64  Aligned_cols=112  Identities=16%  Similarity=0.253  Sum_probs=93.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhhhhhhhHHHH
Q 007702           39 GTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-PNVYVLCIARLLDGFGVGLAVTLVPL  117 (592)
Q Consensus        39 s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-~~~~~ll~~R~l~G~~~g~~~~~~~~  117 (592)
                      +....+++.++..++.+++.+++++++||+|||+++.++.++.+++.++..+. ++.+.+++..++.|++.+...+..++
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567777888899999999999999999999999999998888887777665 45667777888999999999899999


Q ss_pred             HHHhhcC-------ccccchhhHHHHHHHhhHHHHHHHHH
Q 007702          118 YISETAP-------SEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       118 ~i~E~~p-------~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      +++|..|       ++.+|...++.++...+|..+++.+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~  374 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLV  374 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999876       45679999999988888888775443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.92  E-value=4e-09  Score=114.17  Aligned_cols=159  Identities=23%  Similarity=0.308  Sum_probs=123.0

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhh----hcCchHHHH-HHHHHHHHHHHHHHhh-c-------c
Q 007702           27 GAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD----WLGRRPMLI-LSSVLYFVSGLVMLWS-P-------N   93 (592)
Q Consensus        27 ~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~D----r~GRK~~li-~~~~l~~i~~~~~~~s-~-------~   93 (592)
                      ...+++.+.+++++...|++..+..+..++..|+.|.++|    |+|||+..+ ++.++..++.+++... |       .
T Consensus        23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~  102 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK  102 (428)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence            4566788889999999999999999999999999999999    899666555 6778888877777766 4       2


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcC-ccccchhhHHHHHHHhhHHHHHHHHHHHhH--hcCC---CchhHHHHH
Q 007702           94 VYVLCIARLLDGFGVGLAVTLVPLYISETAP-SEIRGRLNTLPQFTGSGGMFLAYCMVFGMS--LLAS---PSWRLMLGV  167 (592)
Q Consensus        94 ~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~--~~~~---~~Wr~~f~i  167 (592)
                      ...+++.-++..++.........++.+|+++ +++|.+..+.-+.+..+|.++.........  ....   .+|++...+
T Consensus       103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v  182 (428)
T PF13347_consen  103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV  182 (428)
T ss_pred             HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence            3345566666677777777777889999998 578999999999888888864433322221  1211   279999999


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 007702          168 LSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~pE  185 (592)
                      .+++.++..++..+..+|
T Consensus       183 ~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  183 LAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             HHHHHHHHhhhhhheeee
Confidence            999988888888888888

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.92  E-value=8.3e-08  Score=103.68  Aligned_cols=177  Identities=20%  Similarity=0.154  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      ...+.+++.++..+.|.+  .+......+-++-|++..++.+......+...+.++++..+.||+|||+.++++..++.+
T Consensus       270 ~~~i~~~v~~~qq~sGi~--ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~  347 (485)
T KOG0569|consen  270 PLLIGIVVSFAQQFSGIN--AIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAV  347 (485)
T ss_pred             HHHHHHHHHHHHHhcCcc--eeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            334444444444444443  333344567788899999899999999999999999999999999999999999999988


Q ss_pred             HHHHHHhhc----cH----H-HHHHHHHHHH--hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHH
Q 007702           84 SGLVMLWSP----NV----Y-VLCIARLLDG--FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFG  152 (592)
Q Consensus        84 ~~~~~~~s~----~~----~-~ll~~R~l~G--~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~  152 (592)
                      ..+++...-    ..    . ..+++.++-.  ++.|. -|+.+-+.+|++|++.|..++++..+...+..++....  .
T Consensus       348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~--f  424 (485)
T KOG0569|consen  348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFA--F  424 (485)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHH--H
Confidence            877776531    11    1 1123333333  33332 36778889999999999999999888877777655222  2


Q ss_pred             hHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          153 MSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       153 ~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      ....+..|= +.|.+..+++++.+++.++++|||
T Consensus       425 p~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  425 PPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            222222332 667777888888888889999999

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.92  E-value=4.2e-08  Score=102.52  Aligned_cols=123  Identities=18%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             HHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHH
Q 007702           27 GAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPN-VYVLCIARLLD  104 (592)
Q Consensus        27 ~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~-~~~ll~~R~l~  104 (592)
                      ...|++.++ ++.+..+.+++.+...++.+++.++.+++.||+|||+.+..+.++.+++.++..+.++ ++.+++..++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAI  311 (365)
T ss_pred             HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence            455665554 8999999999999999999999999999999999999999888888888887777774 88888899999


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      |++.+...+....++.|.+|++.||+..++.+....+|..+++.+
T Consensus       312 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~  356 (365)
T TIGR00900       312 GVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLIL  356 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888887433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.91  E-value=5.5e-08  Score=101.45  Aligned_cols=181  Identities=20%  Similarity=0.233  Sum_probs=144.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      +.-+..+..+-..+.+|.+. .+.....+-+.++|++..+..++.....+.+++|+++.|+|.||+|-|+++.++.+++.
T Consensus       251 ~~~i~~FLiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~  329 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS  329 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence            34455666666667777743 44444555667999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                      +.++...+...-..+.+.-++.|+..|+..+.+-.|.++..|+++-++..+++.+.....+++++........... +-|
T Consensus       330 ~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg-~~r  408 (438)
T COG2270         330 IAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG-SSR  408 (438)
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc-chh
Confidence            9998888877777777888999999999999999999999999999999999999999999999766544433333 356


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCC
Q 007702          163 LMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      ..+....++..+.+ +.++.+|+.
T Consensus       409 ~g~~~i~vll~iGl-~~L~~v~~~  431 (438)
T COG2270         409 AGVLSIIVLLLIGL-LLLLRVKVP  431 (438)
T ss_pred             hHHHHHHHHHHhhH-hhEEeecCC
Confidence            66655555554433 445666654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.88  E-value=1.1e-07  Score=105.13  Aligned_cols=150  Identities=23%  Similarity=0.238  Sum_probs=127.9

Q ss_pred             HHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 007702           25 IAGAIVYI-KKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLL  103 (592)
Q Consensus        25 ~~~~~~~i-~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l  103 (592)
                      +...+|.+ ++.+|.++...|++.+++.+|+++|+++.+.+.+++++++.+..+.++++++.+..+++++.+..++.-++
T Consensus       237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l  316 (524)
T PF05977_consen  237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFL  316 (524)
T ss_pred             HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33455655 56789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHH
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYF  176 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~  176 (592)
                      .|++.....+...+.+.+..|++.||+.++++++....+..++.  ..++.+.+..|-+..+.+.++..++..
T Consensus       317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGs--ll~G~la~~~g~~~al~~a~~~lll~~  387 (524)
T PF05977_consen  317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGS--LLWGFLADHFGVRTALLIAGAALLLSA  387 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            99999988888889999999999999999999988888888873  345555666788888876665544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.87  E-value=1.1e-10  Score=126.95  Aligned_cols=120  Identities=31%  Similarity=0.491  Sum_probs=90.2

Q ss_pred             EEEeecCCCCcccccccccCCCCCCCChHHHHHhhhcccchhhhhhhhccCCCCCCcccCcccccCCCChHHHhhh-chh
Q 007702          437 IYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEA-GVK  515 (592)
Q Consensus       437 ~wL~~~gr~~eA~~sl~~l~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  515 (592)
                      .||++|||.|||+++++++++.+  .++++.++.....+                      +.++.+.+|++++++ .++
T Consensus       196 ~wL~~~~~~~~A~~~l~~~~~~~--~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~  251 (451)
T PF00083_consen  196 RWLLSKGRDEEAEKVLRKLRGKE--IEDEEIEEIKAEKK----------------------ESQESKASWRDLFRNKKYR  251 (451)
T ss_pred             ceecccccccccccccccccccc--cccccccccccccc----------------------cccccceeeeecccccccc
Confidence            59999999999999999998732  11111111111000                      111111578888884 579


Q ss_pred             HHHHHHHHHHHHHHhhcccchhhchHHHHHHcCchhhhhccCCCCchhHHHHHHHHHHHHhhhHhHHHHHhhhcCCC
Q 007702          516 RALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR  592 (592)
Q Consensus       516 r~l~i~~~~~~~qQ~sGin~i~~Y~~~i~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~lvd~~GRR  592 (592)
                      |++++++.++++|+++|++.+.+|.+.+++..|.         +++   ...+.+.++..+++++++.+++||+|||
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~GRr  316 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGI---------SNS---FLATLILGLVNFLGTLLAIFLIDRFGRR  316 (451)
T ss_pred             cccccccccccccccccccccccccccccccccc---------ccc---cccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999998885         122   5667777788889999999999999998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.87  E-value=6.4e-08  Score=105.15  Aligned_cols=155  Identities=16%  Similarity=0.082  Sum_probs=102.1

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH---HHHHHHHh--hccHHHHHHHHHHH
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF---VSGLVMLW--SPNVYVLCIARLLD  104 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~---i~~~~~~~--s~~~~~ll~~R~l~  104 (592)
                      .++++..|.+....++..+.+.++.+++.++.|+++||+|+++....+.++..   ++.+....  ..+.+...+.-++.
T Consensus       276 ~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (438)
T TIGR00712       276 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVI  355 (438)
T ss_pred             HHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            44556679998889999999999999999999999999975432222322221   22222222  22334333444455


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhH-HHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGG-MFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G-~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      |++...........+.|.+|++.||...++.+....+| ..++  +...+...+..+|...+.+..+..++.+++.++.+
T Consensus       356 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~g--p~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  433 (438)
T TIGR00712       356 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA--SAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  433 (438)
T ss_pred             HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhc--chhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence            55432222223356789999999999999988776655 4555  33344445566899999888877777777778888


Q ss_pred             cCC
Q 007702          184 PES  186 (592)
Q Consensus       184 pEs  186 (592)
                      ||.
T Consensus       434 ~~~  436 (438)
T TIGR00712       434 IGE  436 (438)
T ss_pred             hhc
Confidence            885

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.87  E-value=2.3e-07  Score=98.85  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=111.2

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVG  109 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g  109 (592)
                      +.+.++.|.+....+.+.+...++..+..++.|++.||+|+|+++..+.++..++.+...++++.+.+++..++.|++.+
T Consensus       229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  308 (382)
T PRK11128        229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT  308 (382)
T ss_pred             HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            33446789998889999998889999999999999999999999999999988888888888999999999999999999


Q ss_pred             hhhhHHHHHHHhhcCccccchhhHHHH-HHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHH
Q 007702          110 LAVTLVPLYISETAPSEIRGRLNTLPQ-FTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALL  174 (592)
Q Consensus       110 ~~~~~~~~~i~E~~p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~  174 (592)
                      ...+....++.+. +++++++..++.+ +...+|..++  +..++.+.+..++ .++++.+++.++
T Consensus       309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig--~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIM--TVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            9888888898887 5555688888765 4455666666  3444555556566 455555555544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.86  E-value=2.6e-08  Score=106.89  Aligned_cols=186  Identities=23%  Similarity=0.303  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCc-hHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAI-VYIKK-DLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGR-RPMLILSSVL   80 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~-~~i~~-~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GR-K~~li~~~~l   80 (592)
                      .|..+.++.+..|+.+....++.+.. ||+++ |.+.+.+-.|+++++..+|.++++++.|..+.|.|. |+.++.+.++
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii  111 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI  111 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence            35566677778888888877776644 44443 356666889999999999999999999999999986 8889999999


Q ss_pred             HHHHHHHH-Hhh---c-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh
Q 007702           81 YFVSGLVM-LWS---P-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL  155 (592)
Q Consensus        81 ~~i~~~~~-~~s---~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~  155 (592)
                      .++++++. ...   + ..+.++++|++.|+|.|.. +..-.|+++....++|.++++....+..+|..+|+.+.....-
T Consensus       112 ~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~  190 (488)
T KOG2325|consen  112 AIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTP  190 (488)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhh
Confidence            99999888 332   3 5788999999999998765 6678899999999999999999888888999888666554432


Q ss_pred             cCCCc-----------hhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          156 LASPS-----------WRLMLGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       156 ~~~~~-----------Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                      ....|           +..+-|+.++..++.+++..+++.|.++--
T Consensus       191 Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  191 LGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             hcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            22222           445667888888888888888899986643

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.86  E-value=2.4e-07  Score=102.32  Aligned_cols=156  Identities=12%  Similarity=0.116  Sum_probs=115.2

Q ss_pred             HHHHHHHHcCCCchHHHHHHH-HHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH---Hhh-ccHHHHHHHHH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVA-MSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM---LWS-PNVYVLCIARL  102 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s-~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~---~~s-~~~~~ll~~R~  102 (592)
                      ..+++.+++|++..+.+++.. ...++.++|.++.|+++||+|||+.++++.++.+++.++.   ... ++.+.+.+.-+
T Consensus       245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~  324 (491)
T PRK11010        245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF  324 (491)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence            445667789999999999874 5668999999999999999999998887766655544332   232 45555555667


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhh
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFF  182 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~  182 (592)
                      +..++.|...+...++..+.+|++.++...++.+....+|..++..  ..+...+..||+..|.+.++++++.+++.. +
T Consensus       325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~--~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~-~  401 (491)
T PRK11010        325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGP--VAGWFVEAHGWPTFYLFSVAAAVPGLLLLL-V  401 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhChHHHHHHHHHHHHHHHHHHH-H
Confidence            7677777777777889999999999999999998888888776532  344445566899999888888777554443 3


Q ss_pred             ccCC
Q 007702          183 LPES  186 (592)
Q Consensus       183 ~pEs  186 (592)
                      ++++
T Consensus       402 ~~~~  405 (491)
T PRK11010        402 CRQT  405 (491)
T ss_pred             HHhc
Confidence            3443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.84  E-value=9e-08  Score=100.66  Aligned_cols=118  Identities=15%  Similarity=0.185  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHH-HHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh---------
Q 007702           22 NATIAGAIVYIKKDLNLGTTVEGLVVAMSL-IGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS---------   91 (592)
Q Consensus        22 ~~~~~~~~~~i~~~~~~s~~~~gli~s~~~-lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s---------   91 (592)
                      ........|.+.+++|.+..+.+.+.++.. ++.+++.+++|++.||+|||+.++++.++..++..+..+.         
T Consensus       225 ~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (356)
T TIGR00901       225 DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGI  304 (356)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            333444455555558999988888877655 6788999999999999999999999988888776655543         


Q ss_pred             --ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHH
Q 007702           92 --PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTG  139 (592)
Q Consensus        92 --~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~  139 (592)
                        ++.+.+++..++.+++.+...+...+++.|.+|+++||+..++.+...
T Consensus       305 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  354 (356)
T TIGR00901       305 TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLS  354 (356)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence              456777888899999999999999999999999999999999876554

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1.3e-07  Score=98.60  Aligned_cols=175  Identities=19%  Similarity=0.118  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc--CchHHHHHHHHH-HH
Q 007702            7 VAIAATIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--GRRPMLILSSVL-YF   82 (592)
Q Consensus         7 ~~~~~~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~--GRK~~li~~~~l-~~   82 (592)
                      .++.++++++........+.-..| ++.+..|.+...+++..+.+-++.+.|++++|+++||+  |||.+.-+...+ ..
T Consensus       253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~  332 (448)
T COG2271         253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT  332 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            345566677777777766666554 57778899999999999999999999999999999996  777666544444 44


Q ss_pred             HHHHHHHhhc--cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhh-HHHHHHHHHHHhHhcCCC
Q 007702           83 VSGLVMLWSP--NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        83 i~~~~~~~s~--~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~  159 (592)
                      ++.+..-.++  |+++..++-++.|+.+-+..-+.-....|+.|++--|.+.|+..++.-+ |..++..+  .....+..
T Consensus       333 ~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~--~g~i~d~~  410 (448)
T COG2271         333 ASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP--LGYIADTW  410 (448)
T ss_pred             HHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc--ceeeEecC
Confidence            4444444455  4588888889999988777777788889999999999999999888777 66665222  22334557


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhc
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      +|...|.+..+.+++..++...+.
T Consensus       411 gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         411 GWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHH
Confidence            999999888777776555444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.82  E-value=1.2e-07  Score=104.13  Aligned_cols=152  Identities=16%  Similarity=0.041  Sum_probs=104.9

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCch-------HHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRR-------PMLILSSVLYFVSGLVMLWSPNVYVLCIA  100 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK-------~~li~~~~l~~i~~~~~~~s~~~~~ll~~  100 (592)
                      ..+++.+++|++....+.+.+++.++.+++.++.|+++||+|||       ..+.+..++..+..++....++.+..++.
T Consensus       275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  354 (476)
T PLN00028        275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV  354 (476)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence            33456778899999999999999999999999999999999876       23333333333334444555666666666


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      -++.+++.+...+....++.++. ++.||...++...+..+|..+++.+. .  .....+|+..|++.+++.++..++ .
T Consensus       355 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~-~--~~~~~~y~~~f~~~~~~~~i~~~~-~  429 (476)
T PLN00028        355 MILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLF-F--TGSSYSTETGISLMGVMIIACTLP-V  429 (476)
T ss_pred             HHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHH-H--hcCCccHhhHHHHHHHHHHHHHHH-H
Confidence            66667766666566666667765 46899999998887777777764332 1  223457999998888777765444 3


Q ss_pred             hhcc
Q 007702          181 FFLP  184 (592)
Q Consensus       181 ~~~p  184 (592)
                      ++++
T Consensus       430 ~~~~  433 (476)
T PLN00028        430 AFIH  433 (476)
T ss_pred             Hhee
Confidence            4443

>PRK09669 putative symporter YagG; Provisional

Probab=98.81  E-value=8.2e-08  Score=104.48  Aligned_cols=160  Identities=13%  Similarity=0.171  Sum_probs=117.2

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh----cCc-hHHHHHHHHHHHHHHHHHHhhcc------HH
Q 007702           27 GAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW----LGR-RPMLILSSVLYFVSGLVMLWSPN------VY   95 (592)
Q Consensus        27 ~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr----~GR-K~~li~~~~l~~i~~~~~~~s~~------~~   95 (592)
                      ....++.+++|++....|++.++..+..++..|+.|.++||    +|| |+.++++.++.+++.++..+.|+      ++
T Consensus        31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~  110 (444)
T PRK09669         31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKII  110 (444)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            35567889999999999999999999999999999999998    787 45566777777777766555543      45


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhc-CccccchhhHHHHHHHhhHHHHHHHHHHH--hHhc---CCCchhHHHHHHH
Q 007702           96 VLCIARLLDGFGVGLAVTLVPLYISETA-PSEIRGRLNTLPQFTGSGGMFLAYCMVFG--MSLL---ASPSWRLMLGVLS  169 (592)
Q Consensus        96 ~ll~~R~l~G~~~g~~~~~~~~~i~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~--~~~~---~~~~Wr~~f~i~~  169 (592)
                      .+++.-++.+.+.........++.+|+. ++++|+++.++...+..+|..++......  ....   ...+|+..+.+.+
T Consensus       111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~  190 (444)
T PRK09669        111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMG  190 (444)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            5555666666666666666668899998 46889999888888888877766443222  1121   1358998888888


Q ss_pred             HHHHHHHHHHHhhccCC
Q 007702          170 IPALLYFAFAVFFLPES  186 (592)
Q Consensus       170 i~~~~~~~l~~~~~pEs  186 (592)
                      ++.++..++.++..+|.
T Consensus       191 ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        191 LLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HHHHHHHHHHhCCeEEe
Confidence            87776666666666664

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.81  E-value=6e-07  Score=96.30  Aligned_cols=145  Identities=12%  Similarity=0.014  Sum_probs=108.0

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHH
Q 007702           31 YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-----PNVYVLCIARLLDG  105 (592)
Q Consensus        31 ~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-----~~~~~ll~~R~l~G  105 (592)
                      ++.++++.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++.++..+.     ++++.+++.-++.|
T Consensus       241 ~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g  320 (406)
T PRK15402        241 ILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYA  320 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence            3567789998888888888888999999999999999999999999888877776666543     35667778888999


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHH
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l  178 (592)
                      ++.+...+........ .++++||+..+..++...+|..++  ........+..+|....+...+..++.+++
T Consensus       321 ~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  390 (406)
T PRK15402        321 FGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVG--IELSKHAYLGGGNGLFNLFNLANGLLWLLL  390 (406)
T ss_pred             HHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHH--HHHHHhcccCCchHHHHHHHHHHHHHHHHH
Confidence            9998877766555543 445899999999999888888877  344444555556665554444444443333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.80  E-value=2.8e-07  Score=91.70  Aligned_cols=162  Identities=17%  Similarity=0.195  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-------cc
Q 007702           21 DNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-------PN   93 (592)
Q Consensus        21 ~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-------~~   93 (592)
                      ....++...|.+++.+|++.++...+.+.-.+|..+| ++.|.+.|++|.+.+++++.+...++..++..+       ++
T Consensus        17 t~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~   95 (250)
T PF06813_consen   17 TTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLP   95 (250)
T ss_pred             cccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccc
Confidence            4556666778899999999999999999999999875 888999999999999999999999998877653       46


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHH
Q 007702           94 VYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPAL  173 (592)
Q Consensus        94 ~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~  173 (592)
                      +|.+.+..++.|.+.+...+.+.....+.+| ++||.+.++.-....++..+-..+. . .......-...+.+...+.+
T Consensus        96 ~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~-~-~~f~~~~~~fll~la~~~~~  172 (250)
T PF06813_consen   96 VWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIY-S-AFFGDDPSSFLLFLAVLPAV  172 (250)
T ss_pred             hHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHH-H-HHcCCChHHHHHHHHHHHHH
Confidence            7888888889888887777777777778898 5799999998888777765542222 2 22223333444434344444


Q ss_pred             HHHHHHHhhccCCh
Q 007702          174 LYFAFAVFFLPESP  187 (592)
Q Consensus       174 ~~~~l~~~~~pEsP  187 (592)
                      + .++..+++...|
T Consensus       173 v-~l~~~~~vr~~~  185 (250)
T PF06813_consen  173 V-CLVAMFFVRPVP  185 (250)
T ss_pred             H-HHHHhhheeccC
Confidence            4 334444544433

>PRK10054 putative transporter; Provisional

Probab=98.79  E-value=1.6e-07  Score=100.62  Aligned_cols=150  Identities=11%  Similarity=0.150  Sum_probs=114.9

Q ss_pred             HcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHhhhhhhhh
Q 007702           35 DLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-PNVYVLCIARLLDGFGVGLAVT  113 (592)
Q Consensus        35 ~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-~~~~~ll~~R~l~G~~~g~~~~  113 (592)
                      +.+.+....+++.+...+......++.|.+.||+++|+.+.++.++..++.+...++ ++++.+++..++.|++.+...|
T Consensus       238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p  317 (395)
T PRK10054        238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAP  317 (395)
T ss_pred             ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHh
Confidence            445555667777777777777777889999999999999999988888887777664 5777777888999999988888


Q ss_pred             HHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          114 LVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       114 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      ....++.+..|++.|+...+..+ ...+|..++  +..++.+.+..+....|++.++...+..++...-+.|.|
T Consensus       318 ~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~G--p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        318 GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAIN--PLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             hHHHHHHHhCCcccceehHhHHH-HHHHHHHHH--HHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            88899999999999999887654 444677777  444455556668788887776666665656556666655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.79  E-value=2.8e-08  Score=101.19  Aligned_cols=180  Identities=16%  Similarity=0.116  Sum_probs=118.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------------c-hHHHH-HHHHHHHHHHHHHhhHHhh
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLG---------------T-TVEGL-VVAMSLIGATAITTCSGPI   64 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s---------------~-~~~gl-i~s~~~lg~~ig~~~~G~l   64 (592)
                      ||..+..+..++++-...|..-.+..-+-..-..+++.               . +.... =.-+..+.-.-|.++.+.+
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            45667777777777777666554443332221212211               1 00000 1122334556788999999


Q ss_pred             hhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHH
Q 007702           65 SDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMF  144 (592)
Q Consensus        65 ~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~  144 (592)
                      .||+|||++|..+.+++.+..++...+.+.....+.-+..-+++.+.+.++++|..|++|+..|+...|.......+|.+
T Consensus       405 verlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI  484 (528)
T KOG0253|consen  405 VERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI  484 (528)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence            99999999999999999999888877654433344444444556667778889999999999999999999999999999


Q ss_pred             HHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhcc-CC
Q 007702          145 LAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLP-ES  186 (592)
Q Consensus       145 l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~p-Es  186 (592)
                      +++.+.  +  ....+-..+..+.+.+.++..+. ..++| |+
T Consensus       485 ~~p~iA--~--~~e~s~sl~i~vy~~~~ilagIa-vcffPiEt  522 (528)
T KOG0253|consen  485 FSPVIA--M--RAELSTSLPIFVYGALFILAGIA-VCFFPIET  522 (528)
T ss_pred             hhhHHH--H--HhccceeehHHHHHHHHHHHHHH-heeeeecc
Confidence            996555  2  12223345555667766665544 44455 76

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.78  E-value=4.5e-07  Score=96.76  Aligned_cols=147  Identities=14%  Similarity=-0.031  Sum_probs=107.4

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHH-HHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh------hccHHHHHHH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSL-IGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW------SPNVYVLCIA  100 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~-lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~------s~~~~~ll~~  100 (592)
                      ..+.+.++.|++.++.+++..... ++..++.++.|++.||+|+|+.+.++.++.++..+....      .++...++..
T Consensus       230 ~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSC  309 (390)
T ss_pred             HhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHH
Confidence            344444568999999999888775 466778999999999999999998877765333322221      2334444555


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCc-cccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPS-EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYF  176 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~  176 (592)
                      .++.+++.|...+....++.+..++ +.+|+..++.+....+|..+++.  ..+...+..||+..|.+.+++.++..
T Consensus       310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~--~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       310 SAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASS--IAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            6667777888878888887777776 88999999999999999998844  44445556688888887776665533

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.73  E-value=2.5e-07  Score=99.73  Aligned_cols=158  Identities=15%  Similarity=0.028  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHH-HHHHHHHHHHHHHHH
Q 007702           12 TIGNFLQGWDNATIAGAIVYIKKDL--NLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPM-LILSSVLYFVSGLVM   88 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~~i~~~~--~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~-li~~~~l~~i~~~~~   88 (592)
                      .+.++........+...+|.+.+++  +.+..+.+++.+...++..+|.++.|+++||++||+. ++...++.+++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~  327 (412)
T TIGR02332       248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA  327 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555666666664  5667788999999999999999999999999997775 344443444433222


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC-chhHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGV  167 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~-~Wr~~f~i  167 (592)
                      ...++....+++-++.+++.....+...+...|.+|++.|+...++.+....+|..+++.+  .....+.. +|+..+++
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~--~g~i~~~~g~~~~~~~~  405 (412)
T TIGR02332       328 SATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFL--IGILKDATGSFNSGLWF  405 (412)
T ss_pred             HhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhh--cccccccCCCCchhHHH
Confidence            2233322222222233333333334444556788999999999999999999999888433  33344444 59988876


Q ss_pred             HHHH
Q 007702          168 LSIP  171 (592)
Q Consensus       168 ~~i~  171 (592)
                      .++.
T Consensus       406 ~~~~  409 (412)
T TIGR02332       406 VAAL  409 (412)
T ss_pred             HHHH
Confidence            5543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.73  E-value=8.6e-07  Score=88.64  Aligned_cols=164  Identities=26%  Similarity=0.396  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGT--TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~--~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      .....+...++........+.+..+++.+.  ...++..+.+.++..++.++.|.++||+|||+.++.+.....++.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~   86 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL   86 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHH
Confidence            344455555667777777888888887766  478999999999999999999999999999988888887766666777


Q ss_pred             Hhhcc--HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCc-cccchhhHHHHH-HHhhHHHHHHHHHHHhHhcCCCchhHH
Q 007702           89 LWSPN--VYVLCIARLLDGFGVGLAVTLVPLYISETAPS-EIRGRLNTLPQF-TGSGGMFLAYCMVFGMSLLASPSWRLM  164 (592)
Q Consensus        89 ~~s~~--~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~-~~Rg~~~~~~~~-~~~~G~~l~~~~~~~~~~~~~~~Wr~~  164 (592)
                      .+..+  .+.+++.|++.|++.+...+....++.|..|. +.|+...+.... ...+|..+++............+||..
T Consensus        87 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T COG0477          87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA  166 (338)
T ss_pred             HhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            77766  89999999999999999999999999999998 678888888777 466777776533222211145689997


Q ss_pred             HHHHHHHHHH
Q 007702          165 LGVLSIPALL  174 (592)
Q Consensus       165 f~i~~i~~~~  174 (592)
                      |.+.......
T Consensus       167 ~~~~~~~~~~  176 (338)
T COG0477         167 FLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHH
Confidence            7666555543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.72  E-value=3.4e-07  Score=100.58  Aligned_cols=176  Identities=13%  Similarity=0.144  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhh----hcCc-hHHHHHHHHHHHHHH
Q 007702           12 TIGNFLQGWDNATIAG-AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD----WLGR-RPMLILSSVLYFVSG   85 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~-~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~D----r~GR-K~~li~~~~l~~i~~   85 (592)
                      .++.+...+....+.+ ...++.+.+|++....|.+..+..+.-++..++.|.++|    |+|| |+.++++.++++++.
T Consensus        12 g~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         12 GFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             ccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            3444545555555555 445677888999999999999999999999999999999    6698 666677888877776


Q ss_pred             HHHHhhcc------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhc-CccccchhhHHHHHHHhhHHHHHHHHHHHh--Hhc
Q 007702           86 LVMLWSPN------VYVLCIARLLDGFGVGLAVTLVPLYISETA-PSEIRGRLNTLPQFTGSGGMFLAYCMVFGM--SLL  156 (592)
Q Consensus        86 ~~~~~s~~------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~-p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~--~~~  156 (592)
                      +++...++      +..+++.-++.+++.....+...++++|+. ++++|.++.++...+..+|.++........  ...
T Consensus        92 ~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g  171 (473)
T PRK10429         92 FLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVG  171 (473)
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            66654331      334555566667777777777778899999 589999999987776666644442222111  111


Q ss_pred             ---CCCchhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          157 ---ASPSWRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       157 ---~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                         +..+|+....+.+++.++..++.++..+|.+
T Consensus       172 ~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~  205 (473)
T PRK10429        172 GGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVY  205 (473)
T ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHHHcCceecC
Confidence               1236888877777776665666666677753

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.72  E-value=3.6e-07  Score=111.17  Aligned_cols=147  Identities=13%  Similarity=0.060  Sum_probs=113.6

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-----------------
Q 007702           29 IVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-----------------   91 (592)
Q Consensus        29 ~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-----------------   91 (592)
                      .+++++.+|.+....+++.+.+.+|.++|.++.|++++++++++.+.++.++..++.+...+.                 
T Consensus       249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (1140)
T PRK06814        249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF  328 (1140)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh
Confidence            344566789999999999999999999999999999998887777766666665555544442                 


Q ss_pred             ---ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           92 ---PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        92 ---~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                         ++.+.+++.-++.|++.+...+...+++.+.+|++.||+.+++.++...+|..+++.+.... .....++...+++.
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l-~~~~~~~~~~~~~~  407 (1140)
T PRK06814        329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL-QALGFSIPWIILFI  407 (1140)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH-HHhccCHHHHHHHH
Confidence               67777888889999999999999999999999999999999999999999888886543222 22234566666555


Q ss_pred             HHHHHHHH
Q 007702          169 SIPALLYF  176 (592)
Q Consensus       169 ~i~~~~~~  176 (592)
                      +++.++..
T Consensus       408 ~~~~~~~~  415 (1140)
T PRK06814        408 ALANLIVA  415 (1140)
T ss_pred             HHHHHHHH
Confidence            54444433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.70  E-value=1.8e-06  Score=89.01  Aligned_cols=154  Identities=17%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhh
Q 007702           32 IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLA  111 (592)
Q Consensus        32 i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~  111 (592)
                      +-+++|++..+.+.+....+...++..++.|.++||+|||+.-++.+++++++++. -.+++++.++++|++.|++....
T Consensus        60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLL  138 (354)
T PF05631_consen   60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLL  138 (354)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999964 45688999999999999999988


Q ss_pred             hhHHHHH-HHhhc----CccccchhhHHHH-HHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccC
Q 007702          112 VTLVPLY-ISETA----PSEIRGRLNTLPQ-FTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       112 ~~~~~~~-i~E~~----p~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pE  185 (592)
                      .+.--++ +.|.-    |++..+...+... +...+-.+++.++.-...-....+-..||....++.++..+++....+|
T Consensus       139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E  218 (354)
T PF05631_consen  139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE  218 (354)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence            8876554 56653    2222222222111 1111111111111111111112244778877666666666665566677


Q ss_pred             C
Q 007702          186 S  186 (592)
Q Consensus       186 s  186 (592)
                      .
T Consensus       219 N  219 (354)
T PF05631_consen  219 N  219 (354)
T ss_pred             c
Confidence            5

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.68  E-value=2.4e-06  Score=91.58  Aligned_cols=143  Identities=13%  Similarity=0.012  Sum_probs=107.8

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH-HHHHHHHHHhhccHHHHHHHHHHHHh
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL-YFVSGLVMLWSPNVYVLCIARLLDGF  106 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l-~~i~~~~~~~s~~~~~ll~~R~l~G~  106 (592)
                      ..|.+.+++|++....+++.+.+.++..++.++.+++.||.+ |+.++.+.++ ..+..++..+.++.+.+.+..++.|+
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~  317 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGL  317 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            346677888999988999999999999999999999999964 4444444444 34444555566777888888999999


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHH
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALL  174 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~  174 (592)
                      +.+...+....++.+..| +.+++..+.......+|..++  +..++...+..+++.++...++..++
T Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G--~~l~G~l~~~~g~~~~~~~~~~~~~~  382 (394)
T PRK10213        318 TFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCG--AAIGGYALDNIGLTSPLMLSGTLMLL  382 (394)
T ss_pred             HHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHH--HHHHHHHHhccChhhHHHHHHHHHHH
Confidence            999998988989999887 446677777667777888777  44445556667888888776655444

>PRK09848 glucuronide transporter; Provisional

Probab=98.68  E-value=9.6e-07  Score=96.18  Aligned_cols=124  Identities=19%  Similarity=0.283  Sum_probs=96.0

Q ss_pred             HHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHH
Q 007702           27 GAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP--NVYVLCIARLL  103 (592)
Q Consensus        27 ~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~--~~~~ll~~R~l  103 (592)
                      ...++ ++..+|.+....++......++.+++.++.+++.||+|+|+++.++.++.+++.++..+.+  +++.+++..++
T Consensus       249 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l  328 (448)
T PRK09848        249 ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAI  328 (448)
T ss_pred             hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHH
Confidence            33444 3445676555555555555677888999999999999999999999998888887777654  56777777888


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCcc-------ccchhhHHHHHHHhhHHHHHHHHH
Q 007702          104 DGFGVGLAVTLVPLYISETAPSE-------IRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~-------~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      .|++.+...+...++.+|..|.+       .+|...++.++...+|..++..+.
T Consensus       329 ~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~  382 (448)
T PRK09848        329 ASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIP  382 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998754       358888898888888888775443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.67  E-value=7.5e-07  Score=97.61  Aligned_cols=123  Identities=16%  Similarity=0.239  Sum_probs=104.0

Q ss_pred             HHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh----hccHHHHHHH
Q 007702           26 AGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW----SPNVYVLCIA  100 (592)
Q Consensus        26 ~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~----s~~~~~ll~~  100 (592)
                      ...+| ++++.+|.+..+.++......++..++.++.|++.||+|||+.+.++.++.+++.+++.+    ..+++.+.+.
T Consensus       275 ~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (485)
T TIGR00711       275 FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALP  354 (485)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence            33444 455668999999999999999999999999999999999999999999888888877763    2356667777


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYC  148 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~  148 (592)
                      -++.|++.+...+.......+..|+++||.+.++.++...+|..+++.
T Consensus       355 ~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~  402 (485)
T TIGR00711       355 QFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTA  402 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            889999999888877888889999999999999999998888888743

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.4e-06  Score=91.57  Aligned_cols=159  Identities=16%  Similarity=0.104  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-ccHHHH
Q 007702           19 GWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-PNVYVL   97 (592)
Q Consensus        19 g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-~~~~~l   97 (592)
                      +-....+...-|++++..|++.+..+++.-.+.++..+|..+.|+++|| +.|+.++...++.++..+...+. ++.+..
T Consensus       225 ~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~  303 (394)
T COG2814         225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALA  303 (394)
T ss_pred             cchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            3334556667899999999999999999999999999999999999999 99999999888877777666655 455566


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHH
Q 007702           98 CIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFA  177 (592)
Q Consensus        98 l~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~  177 (592)
                      ++.-++.|+..+.......+-+++ .-|+.+....++++...++|..++  ...+....++.++....++.+++.++.++
T Consensus       304 ~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~G--A~lGG~v~~~~g~~~~~~~~a~l~~~a~~  380 (394)
T COG2814         304 LALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALG--AALGGLVLDALGYAATGWVGAALLLLALL  380 (394)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            666666777666555554555555 346789999999999999999888  44455556668999999998888877665


Q ss_pred             HHHh
Q 007702          178 FAVF  181 (592)
Q Consensus       178 l~~~  181 (592)
                      +.++
T Consensus       381 ~~~~  384 (394)
T COG2814         381 LALL  384 (394)
T ss_pred             HHHH
Confidence            5443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.67  E-value=2.3e-06  Score=90.42  Aligned_cols=132  Identities=17%  Similarity=0.265  Sum_probs=99.6

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHH
Q 007702           31 YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-----PNVYVLCIARLLDG  105 (592)
Q Consensus        31 ~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-----~~~~~ll~~R~l~G  105 (592)
                      ++.++++.++...+++.+...++..++.++.|++.||+|||+.+..+.++..++.+++.+.     +....+++.-++.|
T Consensus       232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  311 (385)
T TIGR00710       232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVG  311 (385)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4566899999999999999999999999999999999999999998888877776666543     23445566677889


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHh-hHHHHHHHHHHHhHhcCCCchhHHHH
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGS-GGMFLAYCMVFGMSLLASPSWRLMLG  166 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~-~G~~l~~~~~~~~~~~~~~~Wr~~f~  166 (592)
                      ++.+...+....+..|..| +.||...++.+.... +|.+.++...   ...+..+|...+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~---~~~~~~~~~~~~~  369 (385)
T TIGR00710       312 IGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS---LIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH---hccccChHHHHHH
Confidence            9999888988899999887 578999998776544 4555554322   2233344554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.66  E-value=3.7e-07  Score=97.34  Aligned_cols=166  Identities=17%  Similarity=0.162  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHcC----CCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIAG-AIVYIKKDLN----LGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFV   83 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~-~~~~i~~~~~----~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i   83 (592)
                      .+...-+...++...+.. ...|+..+++    ++.+.+.-+.+.|..-.-+.++++|+++||+ |+|++++.+.+++.+
T Consensus        25 ~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~i  104 (498)
T COG3104          25 LIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAI  104 (498)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            334445555555544444 3346777777    8888887777777777777889999999995 999999999999999


Q ss_pred             HHHHHHhhc--cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc--cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           84 SGLVMLWSP--NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        84 ~~~~~~~s~--~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      +.++.+.+.  ....+.++-.+.++|.|..=+....+++|+.|+++  |-...++..++.++|.++++.+  ........
T Consensus       105 Gh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i--~~~~~~~~  182 (498)
T COG3104         105 GHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII--TGLLAINY  182 (498)
T ss_pred             HHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH--HHHHHHhh
Confidence            999999884  78888999999999999999999999999999754  5567778888999999999544  45556677


Q ss_pred             chhHHHHHHHHHHHHHHH
Q 007702          160 SWRLMLGVLSIPALLYFA  177 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~  177 (592)
                      +|...|.+.++-..+.++
T Consensus       183 g~~~gF~~aavGm~~gl~  200 (498)
T COG3104         183 GWHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             CHHHHHHHHHHHHHHHHH
Confidence            899999887776665443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.66  E-value=2.4e-06  Score=90.95  Aligned_cols=147  Identities=11%  Similarity=0.081  Sum_probs=103.3

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHh
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW-SPNVYVLCIARLLDGF  106 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~-s~~~~~ll~~R~l~G~  106 (592)
                      ..|++.+.+|.+....+++.+...++.+++.++.|++.||+|+|+.+.++.++.+++.++... .++.+..++..++.++
T Consensus       222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  301 (382)
T PRK10091        222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCA  301 (382)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            446677778999999999999999999999999999999999999999988888877765543 4555666666666676


Q ss_pred             hhhhhhhHHH-HHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC-CCchhHHHHHHHHHHHHHHHH
Q 007702          107 GVGLAVTLVP-LYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA-SPSWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus       107 ~~g~~~~~~~-~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~-~~~Wr~~f~i~~i~~~~~~~l  178 (592)
                      +.+...+... ....+..|++.++...  .+....+|..+++.  ......+ ..+|+..+.+.++..++....
T Consensus       302 g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~--~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        302 GLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAY--CGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHH--HhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            6554444333 3344444555555443  35566788888743  3343334 467888888776666554433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.64  E-value=5.1e-07  Score=94.77  Aligned_cols=149  Identities=20%  Similarity=0.102  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC-chHHHH-HHHHH-HHHHHHHHHh
Q 007702           15 NFLQGWDNATIAGAI-VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG-RRPMLI-LSSVL-YFVSGLVMLW   90 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~-~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G-RK~~li-~~~~l-~~i~~~~~~~   90 (592)
                      .+........+.... +++.+.++.+..+.+++.+.+.++.+++.++.|+++||++ ||+..+ ..... ..++......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (379)
T TIGR00881       225 YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL  304 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc
Confidence            333333333333333 4456778999999999999999999999999999999863 333322 22212 2222222222


Q ss_pred             --hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHH
Q 007702           91 --SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLML  165 (592)
Q Consensus        91 --s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f  165 (592)
                        ..+...+++..++.|+......+....++.|.+|++.||+..++.+....+|..+++  .....+.+..||++.|
T Consensus       305 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~--~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       305 NPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAG--LPLGYLADGFGWAGAF  379 (379)
T ss_pred             CcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhh--hhHHHHHHhhcccccC
Confidence              234555666677777766666666778899999999999999999999999988874  3344455666777653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.64  E-value=2.7e-06  Score=91.08  Aligned_cols=140  Identities=11%  Similarity=0.042  Sum_probs=105.8

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVG  109 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g  109 (592)
                      +++++.+|.+..+.|++.+...+|.++++++.+++.||+++|+++..+. +.++..++..+.++++.+++.-++.|++.+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g  308 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGG  308 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            4566778999999999999999999999999999999999998888775 444444555667777777778888999998


Q ss_pred             hhhhHHHHHHHhhcCccc-cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHH
Q 007702          110 LAVTLVPLYISETAPSEI-RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIP  171 (592)
Q Consensus       110 ~~~~~~~~~i~E~~p~~~-Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~  171 (592)
                      ...+...+.+.+..|++. +|+..++.+....+|..++..+.... ......++..|...+.+
T Consensus       309 ~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  370 (393)
T PRK11195        309 FFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLL  370 (393)
T ss_pred             hhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHH
Confidence            888878888888777665 79999999999999988885443322 22223444444444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.63  E-value=3.1e-06  Score=89.83  Aligned_cols=157  Identities=17%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCc---hHHHHH-HHHHHHHHHHHHHh
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGR---RPMLIL-SSVLYFVSGLVMLW   90 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GR---K~~li~-~~~l~~i~~~~~~~   90 (592)
                      .+........+...+|.+.++.+.+.. .+...++..++..++   .++++||+.|   |+.... ..++..+..+..++
T Consensus       201 ~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~  276 (368)
T TIGR00903       201 LGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF  276 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444556665567777654 566666655555555   4667777654   443332 34444444444455


Q ss_pred             hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           91 SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        91 s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                      +.+....++.-++.|++....++..+.+.+|.+|++.||+..++.+....+|.+.++...... .   .+-...|.+.++
T Consensus       277 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~-~---~~~~~~f~~~~~  352 (368)
T TIGR00903       277 ELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLF-I---SSAEAYFTFLAI  352 (368)
T ss_pred             ccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHH-h---cCHHHHHHHHHH
Confidence            555445455556777777777788889999999999999999999999999987775444222 2   166777777777


Q ss_pred             HHHHHHHHH
Q 007702          171 PALLYFAFA  179 (592)
Q Consensus       171 ~~~~~~~l~  179 (592)
                      +.++.++..
T Consensus       353 ~~~i~~~~~  361 (368)
T TIGR00903       353 LITIAFAIA  361 (368)
T ss_pred             HHHHHHHHH
Confidence            777655443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=2.9e-06  Score=90.96  Aligned_cols=174  Identities=20%  Similarity=0.206  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC-chHHHHHHHHHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG-RRPMLILSSVLYFVSGLVML   89 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G-RK~~li~~~~l~~i~~~~~~   89 (592)
                      ++.-+|++.+..+.+.|.++.+-++.|++..++|++.++..+..+++++++|.++||++ +|+.+.+..++.++..+...
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777888888888889999999999999999999999999999999986 67777777777777777777


Q ss_pred             hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHH--HhHhcCCCchhHHHHH
Q 007702           90 WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVF--GMSLLASPSWRLMLGV  167 (592)
Q Consensus        90 ~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~--~~~~~~~~~Wr~~f~i  167 (592)
                      +.++++.+++.-++..+......|..-++..+....  ++.--+-.-+++++|..++.....  .....+..+....+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            788888888887777777777777766666666652  222223334455566555432211  1111112223344555


Q ss_pred             HHHHHHHHHHHHHhhccCCh
Q 007702          168 LSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~pEsP  187 (592)
                      .++..++.. ...+.+|+.|
T Consensus       165 ~~~~~~ll~-~~~l~lp~~~  183 (400)
T PF03825_consen  165 AAILSLLLA-GFALFLPKTP  183 (400)
T ss_pred             HHHHHHHHH-HHHHhCCCCc
Confidence            554444322 3345678877

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.63  E-value=1.2e-06  Score=92.11  Aligned_cols=231  Identities=14%  Similarity=0.129  Sum_probs=160.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702            2 NGAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus         2 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      +|+|+++++.++-++.++..+..+++...+....|+ +....-|..-+|.+.++...+.+-|+.|++|-|..++++..+.
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            478999999999999999999999998889999999 7778889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc------cHH--HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh
Q 007702           82 FVSGLVMLWSP------NVY--VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM  153 (592)
Q Consensus        82 ~i~~~~~~~s~------~~~--~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~  153 (592)
                      .+++.+-..+.      .++  ....+..+.+.+.-.....-+-..+-|+|+++|..+.++-.++..+|..+++++.-..
T Consensus       120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence            99998887752      334  5667777777776666555556677899999999999987777777777764433221


Q ss_pred             H----hcCCCchhH--HHHHHHHHHHHHHHHHHhhccCChhH---HHh-cCcHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 007702          154 S----LLASPSWRL--MLGVLSIPALLYFAFAVFFLPESPRW---LVS-KGKMLEAKQVLQRLRGREDVSGEMALLVEGL  223 (592)
Q Consensus       154 ~----~~~~~~Wr~--~f~i~~i~~~~~~~l~~~~~pEsP~~---l~~-~~~~~ea~~~l~~l~~~~~~~~~~~~i~~~l  223 (592)
                      .    ..++..|-.  +|+....+..+.+++..++.++.|+.   ..+ +.+..+-.+.+++..+..  +-.+..+.-++
T Consensus       200 V~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~--~F~il~~~ygi  277 (480)
T KOG2563|consen  200 VPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNR--QFIILAICYGI  277 (480)
T ss_pred             cCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCc--cHHHHHHHHhh
Confidence            1    112345655  35544555444445555555554332   211 111112333444443332  23455556666


Q ss_pred             hcccchhhhHhh
Q 007702          224 GIGGETSIEEYI  235 (592)
Q Consensus       224 ~~~~~~~~~~~~  235 (592)
                      +.+..+++...+
T Consensus       278 ~~g~F~~l~~~l  289 (480)
T KOG2563|consen  278 GLGLFNSLSTLL  289 (480)
T ss_pred             hHHHHHHHHHHh
Confidence            666666665544

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.59  E-value=2.2e-06  Score=92.04  Aligned_cols=123  Identities=12%  Similarity=0.007  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhh-hcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD-WLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGF  106 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~D-r~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~  106 (592)
                      ..|.+.++.+.++...+++.+...++...+....+.+.| |++.++.++.+.++..++.++.+++++++.+++..++.|+
T Consensus       230 ~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  309 (400)
T PRK11646        230 MLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYI  309 (400)
T ss_pred             hhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            455554554446677888877777766655555566655 5676777788888888888888888888888788888888


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      +.+...|...+++.+.+|+++||+..++.++...+|..+++...
T Consensus       310 g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~  353 (400)
T PRK11646        310 GSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGG  353 (400)
T ss_pred             HHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccch
Confidence            88888888899999999999999999999999999988885443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.59  E-value=9.2e-07  Score=91.98  Aligned_cols=127  Identities=26%  Similarity=0.322  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHH-HHHcCCC-chHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc---cHH
Q 007702           21 DNATIAGAIVYI-KKDLNLG-TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP---NVY   95 (592)
Q Consensus        21 ~~~~~~~~~~~i-~~~~~~s-~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~---~~~   95 (592)
                      .........|.+ .++++.+ ..+.+++.++..++..++.++.|+++||+|+|+.+.+......+..+...+..   +..
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPV  300 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHH
T ss_pred             HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            333355556654 8889999 78899999999999999999999999999999888888888777777666543   457


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHH
Q 007702           96 VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAY  147 (592)
Q Consensus        96 ~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~  147 (592)
                      ..++.-++.|++.+...+....++.|.+|+++||+..++.+....+|..++|
T Consensus       301 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  301 WLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7777888999999999999999999999999999999999999998888773

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.58  E-value=5.1e-06  Score=89.09  Aligned_cols=144  Identities=17%  Similarity=0.137  Sum_probs=97.8

Q ss_pred             HHHHHHHcCCCchHHHHHHHHH-HHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH---Hhh-ccHHHHHHHHH-
Q 007702           29 IVYIKKDLNLGTTVEGLVVAMS-LIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM---LWS-PNVYVLCIARL-  102 (592)
Q Consensus        29 ~~~i~~~~~~s~~~~gli~s~~-~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~---~~s-~~~~~ll~~R~-  102 (592)
                      .+++.+++|++..+.+++.+.. .++.+++.++.|++.||+|||+.+.++.++.++..+..   ++. ++.+.+++.-+ 
T Consensus       233 ~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  312 (402)
T PRK11902        233 TTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGI  312 (402)
T ss_pred             HHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3556778999999899988665 45688999999999999999999887777766554433   343 45555555443 


Q ss_pred             ---HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHH
Q 007702          103 ---LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus       103 ---l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l  178 (592)
                         ..|++.+...+....++.+.+|.+.++.    .+....+|..++.  ..++.+.+..||+..|.+.++++++.+++
T Consensus       313 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~--~~~G~l~~~~G~~~~f~~~~~~~~~~~~~  385 (402)
T PRK11902        313 ENLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVG--PTSGYLVEAYGWPGFYLMTVVIALPGLAL  385 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence               4555566666777777777777666544    3333344544332  23455567789999998888777665433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.58  E-value=1e-06  Score=96.97  Aligned_cols=171  Identities=14%  Similarity=0.118  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC--chHHHHHHHHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG--RRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G--RK~~li~~~~l~~i~~~~~   88 (592)
                      ..++..+......+....+|.+.+..+.+..+.+.+.++..+..+++.++.|+++|+..  ++.+..++.++.+++.+.+
T Consensus       303 ~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~  382 (509)
T KOG2504|consen  303 LALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFL  382 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555778888899999999999999999999999999999999988  5666667777888888899


Q ss_pred             HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC-chhHHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP-SWRLMLGV  167 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~-~Wr~~f~i  167 (592)
                      .++++++.+...-++.|++.|......+..+.|+.+.++-..+.++..++.+++.+++  +.+...+.+.. +|...|++
T Consensus       383 p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g--pPiag~~~d~tg~Y~~~f~~  460 (509)
T KOG2504|consen  383 PFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVG--PPIAGLLYDITGNYDHAFYF  460 (509)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcC--cccceeeeeccCCeeeehhh
Confidence            9999999999999999999999999999999999999999999999999999999888  44444555544 49999998


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 007702          168 LSIPALLYFAFAVFFLP  184 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~p  184 (592)
                      .++..++.. +.++..|
T Consensus       461 ~g~~~~~s~-~~~~~~~  476 (509)
T KOG2504|consen  461 CGLCFLLSA-VLLLILR  476 (509)
T ss_pred             cChHHHHHH-HHHHHhH
Confidence            888877654 3344444

>TIGR00896 CynX cyanate transporter

Probab=98.57  E-value=1.4e-06  Score=91.49  Aligned_cols=122  Identities=18%  Similarity=0.163  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q 007702           25 IAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLL  103 (592)
Q Consensus        25 ~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l  103 (592)
                      +...+|.+.++.|.+....+.+.+...++.+++.++.|+++||+ +||+.+.++.++.+++.++..+.++...+. .-++
T Consensus       216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  294 (355)
T TIGR00896       216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV  294 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence            33455666667899999999999999999999999999999999 577777788888888777777665433322 3567


Q ss_pred             HHhhhhhhhhHHHHHHHhhcC-ccccchhhHHHHHHHhhHHHHHH
Q 007702          104 DGFGVGLAVTLVPLYISETAP-SEIRGRLNTLPQFTGSGGMFLAY  147 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~  147 (592)
                      .|++.|...+.....+.+..+ ++.++...++.+....+|..+++
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp  339 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGP  339 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999888887777765554 56678888887777777766663

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.56  E-value=2.9e-06  Score=93.76  Aligned_cols=118  Identities=16%  Similarity=0.072  Sum_probs=102.2

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHHh
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW---SPNVYVLCIARLLDGF  106 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~---s~~~~~ll~~R~l~G~  106 (592)
                      .+++..+|.++.+.++....+.++..++.++.|++.||+|||+.+..+.++..++.++..+   .++.+...+..++.|+
T Consensus       284 ~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~  363 (495)
T PRK14995        284 QELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGF  363 (495)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            3567778999999999999999999999999999999999999999888888777665543   2456666778899999


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHH
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAY  147 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~  147 (592)
                      +.|...+.....+.+..|++++|...++.++...+|..++.
T Consensus       364 g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~  404 (495)
T PRK14995        364 SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGI  404 (495)
T ss_pred             hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHH
Confidence            99999888888999999999999999999999888888773

>TIGR01272 gluP glucose/galactose transporter

Probab=98.55  E-value=5.8e-06  Score=85.66  Aligned_cols=152  Identities=10%  Similarity=0.022  Sum_probs=106.9

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHH--HcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH
Q 007702           13 IGNFLQG-WDNATIAGAIVYIKK--DLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML   89 (592)
Q Consensus        13 l~~~~~g-~~~~~~~~~~~~i~~--~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~   89 (592)
                      ++.|.+- ......+....++.+  .+|++..+.++..+.+..+.++|.++.+++.||+|+|+++.++.++..++.++..
T Consensus       147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~  226 (310)
T TIGR01272       147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA  226 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            3444433 333333334445543  3689999999999999999999999999999999999999988888888776666


Q ss_pred             hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHH
Q 007702           90 WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLS  169 (592)
Q Consensus        90 ~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~  169 (592)
                      ..++...+ .+-++.|++.+..+|.......+..|++ .+...++. ....+|..+.+  ...+...+..+.+..|++..
T Consensus       227 ~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P--~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       227 LTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVP--LLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             HcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHH--HHHHHHHHhccchHHHHHHH
Confidence            55544333 3556889999999999999888888764 34555554 34456666663  33344445567777776433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09669 putative symporter YagG; Provisional

Probab=98.53  E-value=4.7e-06  Score=90.71  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh--hccHHHHHHHH
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW--SPNVYVLCIAR  101 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~--s~~~~~ll~~R  101 (592)
                      ..+...+++.+..--.....+.+.....+..+++.+++++++||+|+|+.+.++.++.++..+...+  .++.+.+++..
T Consensus       247 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (444)
T PRK09669        247 TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALN  326 (444)
T ss_pred             HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            3333444443332223344555666677888899999999999999999999888776654443333  34677778888


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCc-------cccchhhHHHHHHHhhHHHHHHHHH
Q 007702          102 LLDGFGVGLAVTLVPLYISETAPS-------EIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       102 ~l~G~~~g~~~~~~~~~i~E~~p~-------~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      ++.|++.+...+...++++|..+.       +..|...+...+...+|..+++.+.
T Consensus       327 ~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~  382 (444)
T PRK09669        327 ILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVV  382 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999862       2335667777777777777764443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.53  E-value=1.5e-06  Score=96.56  Aligned_cols=167  Identities=18%  Similarity=0.063  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhcc------------
Q 007702           26 AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPN------------   93 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~------------   93 (592)
                      ....+.+-+..+.+... .+...+..+...+++.++..+.||+|||+.++.+.+.+.++.++.+....            
T Consensus       315 ~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~  393 (513)
T KOG0254|consen  315 FYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGA  393 (513)
T ss_pred             EeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccch
Confidence            33445566666666543 45555555666777778899999999999999999999998887775311            


Q ss_pred             -HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHH
Q 007702           94 -VYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPA  172 (592)
Q Consensus        94 -~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~  172 (592)
                       +..+...-+.......+..++.+.+.+|++|.+.|+++.++......+..++.. .. ........++...|.+.+..+
T Consensus       394 ~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~-~~-~~~~~~~~~~~~~f~~f~~~~  471 (513)
T KOG0254|consen  394 GWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS-FF-FPFITEALGIGGTFGYFGGIC  471 (513)
T ss_pred             hHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH-HH-HHHHHHhccccchHHHHHHHH
Confidence             112222222222223333466668899999999999999987766555554331 11 111112222455666666666


Q ss_pred             HHHHH-HHHhhccCChhHHHhcCcHHHHHH
Q 007702          173 LLYFA-FAVFFLPESPRWLVSKGKMLEAKQ  201 (592)
Q Consensus       173 ~~~~~-l~~~~~pEsP~~l~~~~~~~ea~~  201 (592)
                      .+..+ +.++++|||      |++..|..+
T Consensus       472 ~~~~~~fv~~~~pET------kg~sleei~  495 (513)
T KOG0254|consen  472 LLSLIIFVFFFVPET------KGLTLEEIN  495 (513)
T ss_pred             HHHHHHHheEEcccC------CCCcHHHHH
Confidence            65565 678899999      777766443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.53  E-value=6.3e-06  Score=90.54  Aligned_cols=128  Identities=16%  Similarity=0.139  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh-----hccHHH
Q 007702           22 NATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW-----SPNVYV   96 (592)
Q Consensus        22 ~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~-----s~~~~~   96 (592)
                      ....+...+++.+...-+....+++.++..++.+++.+++++++||+|+|+.++++.++.+++.+...+     ..+.+.
T Consensus       247 ~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
T PRK10429        247 SNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL  326 (473)
T ss_pred             HHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence            334444444544444334556677777777889999999999999999999999888877766655432     345667


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCc-------cccchhhHHHHHHHhhHHHHHHHH
Q 007702           97 LCIARLLDGFGVGLAVTLVPLYISETAPS-------EIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus        97 ll~~R~l~G~~~g~~~~~~~~~i~E~~p~-------~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      +++.-++.|++.+...+..+++++|..+.       +..|...++..+..-+|..+++.+
T Consensus       327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i  386 (473)
T PRK10429        327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFF  386 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHH
Confidence            77777889999999999999999999662       233557788777777777776443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.51  E-value=2.1e-06  Score=91.14  Aligned_cols=166  Identities=14%  Similarity=0.229  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh
Q 007702           15 NFLQGWDNATIAGAIVYIKKDLNL---GTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS   91 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~i~~~~~~---s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s   91 (592)
                      .+.+.+|+...    .+++..|+-   ++...|.+.++..+.-++.-.+++++.+|+|.|+.++++.+++.+=.+.++++
T Consensus       234 ~~Y~vfdqqf~----~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~  309 (412)
T PF01306_consen  234 AIYDVFDQQFP----IYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA  309 (412)
T ss_dssp             HHHHHHHHHHH----HHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHH----HHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh
Confidence            45555655422    233333332   33668888898888889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           92 PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        92 ~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                      ++.+.+.+.+.+.|+..+.......-|+++.+|++..++.-.+ .++...+|..+.  ....+...+..|.+..|++.+.
T Consensus       310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~--s~~~G~lyd~~G~~~tylimg~  387 (412)
T PF01306_consen  310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL--SPLAGYLYDRIGFQHTYLIMGL  387 (412)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH--hhhHHhhHhhcCcHHHHHHHHH
Confidence            9999999999999999999999999999999999987665555 355566666654  4445566677799999999888


Q ss_pred             HHHHHHHHHHhhccCC
Q 007702          171 PALLYFAFAVFFLPES  186 (592)
Q Consensus       171 ~~~~~~~l~~~~~pEs  186 (592)
                      +.++..++..+.++..
T Consensus       388 iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  388 IVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHHHHHHHS--S
T ss_pred             HHHHHHHHheeeecCC
Confidence            8887777777777654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.50  E-value=3.9e-06  Score=91.82  Aligned_cols=148  Identities=17%  Similarity=0.267  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHH-HHHHHHHHHHHHHHhh-c-cHHHHHHHHHHHHhhhhhhhhHHHH
Q 007702           41 TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI-LSSVLYFVSGLVMLWS-P-NVYVLCIARLLDGFGVGLAVTLVPL  117 (592)
Q Consensus        41 ~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li-~~~~l~~i~~~~~~~s-~-~~~~ll~~R~l~G~~~g~~~~~~~~  117 (592)
                      +..++..++..+-.++..|+.|.++|+-|+||.++ +..++.+++++++.+. + +++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999998666555 4555566677777664 3 4555555556666777777788889


Q ss_pred             HHHhhcCcccc--------------------------chhhHHHHHHHhhHHHHHHHHHHHhHhcCC------CchhHHH
Q 007702          118 YISETAPSEIR--------------------------GRLNTLPQFTGSGGMFLAYCMVFGMSLLAS------PSWRLML  165 (592)
Q Consensus       118 ~i~E~~p~~~R--------------------------g~~~~~~~~~~~~G~~l~~~~~~~~~~~~~------~~Wr~~f  165 (592)
                      |+.|+++++.+                          ++..+.-...+.+|.++..++.+.......      .+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999988                          999998888888888777555555433222      2468888


Q ss_pred             HHHHHHHHHHHHHHHhhccCChh
Q 007702          166 GVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       166 ~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      .+.++.-++..+..++++||.|+
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCC
Confidence            88888888878888888998875

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.50  E-value=1.3e-05  Score=86.01  Aligned_cols=171  Identities=20%  Similarity=0.262  Sum_probs=124.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh-
Q 007702           14 GNFLQGWDNATIAGAIVYIKKDLN-LGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS-   91 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~i~~~~~-~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s-   91 (592)
                      ..++.+.....+....+..-++.+ .+....+.+.++..++=++.-.+.+++..|+|.|++++++.+.+++=..+.++. 
T Consensus       215 ~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~  294 (400)
T PF03825_consen  215 AAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFS  294 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345556556666666666666766 666777777777777777888899999999999999999999999988888876 


Q ss_pred             ccHHHHH----HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHH-HhhHHHHHHHHHHHhHhcCC------Cc
Q 007702           92 PNVYVLC----IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFT-GSGGMFLAYCMVFGMSLLAS------PS  160 (592)
Q Consensus        92 ~~~~~ll----~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~-~~~G~~l~~~~~~~~~~~~~------~~  160 (592)
                      ++.+...    +..++.|+..|........|+.+.+|++.|+++.+++... ..+|..++....  +.+.+.      ..
T Consensus       295 ~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig--G~l~~~~g~~~~~~  372 (400)
T PF03825_consen  295 DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG--GWLYDAFGARGMFD  372 (400)
T ss_pred             CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH--HHHHHHhcchhhhh
Confidence            5544333    3356799999999999999999999999999999987754 567777774333  333332      24


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      |...+.+.++..++..++.+++.+|+
T Consensus       373 ~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  373 WSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            56666666666666565555666654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.48  E-value=1.8e-05  Score=83.73  Aligned_cols=116  Identities=13%  Similarity=0.093  Sum_probs=83.1

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHHHh
Q 007702           31 YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW----SPNVYVLCIARLLDGF  106 (592)
Q Consensus        31 ~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~----s~~~~~ll~~R~l~G~  106 (592)
                      ++.+.+|.+..+.+++.+...++.+++.++.|++.||+|||+.+.++.++..+..+....    ..+++.+.++-.+.+.
T Consensus       220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (377)
T PRK11102        220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVG  299 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999888765544333222    2244444444445555


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHH-HhhHHHHHH
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFT-GSGGMFLAY  147 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~-~~~G~~l~~  147 (592)
                      +.+...+....++.|..| +.||...++.+.. ..+|..++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~  340 (377)
T PRK11102        300 CVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGA  340 (377)
T ss_pred             HHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHH
Confidence            555555556667778776 7899988886654 345555553

>PRK11462 putative transporter; Provisional

Probab=98.48  E-value=6.6e-06  Score=90.07  Aligned_cols=169  Identities=12%  Similarity=0.116  Sum_probs=121.1

Q ss_pred             HHHHHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh----cCchHHH-HHHHHHHHHHHHHHHhhc
Q 007702           19 GWDNATIAG-AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW----LGRRPML-ILSSVLYFVSGLVMLWSP   92 (592)
Q Consensus        19 g~~~~~~~~-~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr----~GRK~~l-i~~~~l~~i~~~~~~~s~   92 (592)
                      +.....++. .+.++....|+++...|.+..+.-+--++.-|+.|.++||    +|||+.. +++.+.++++.+++...|
T Consensus        22 ~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         22 HIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence            333333443 4556788899999999999999999999999999999995    7986555 467678887776665554


Q ss_pred             c------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcC-ccccchhhHHHHHHHhhHHHHHHHHHHHhH--hc---CCCc
Q 007702           93 N------VYVLCIARLLDGFGVGLAVTLVPLYISETAP-SEIRGRLNTLPQFTGSGGMFLAYCMVFGMS--LL---ASPS  160 (592)
Q Consensus        93 ~------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~--~~---~~~~  160 (592)
                      .      +..+++.-++..++.........++.+|+++ +++|.++.++...+..+|..+++.......  ..   ...+
T Consensus       102 ~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g  181 (460)
T PRK11462        102 DLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG  181 (460)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh
Confidence            2      3445555556677777777777789999998 789999999999998888776644432221  11   1237


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          161 WRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      |+....+.+++.++..+++++..+|.+
T Consensus       182 ~~~~~~i~~ii~~i~~~i~~~~~kE~~  208 (460)
T PRK11462        182 FQGGIAVLSVVAFMMLAFCFFTTKERV  208 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcceecc
Confidence            888887777777666656566667753

>PRK10133 L-fucose transporter; Provisional

Probab=98.46  E-value=1.2e-05  Score=87.39  Aligned_cols=139  Identities=6%  Similarity=-0.134  Sum_probs=100.9

Q ss_pred             HHH-HHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhh
Q 007702           30 VYI-KKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGV  108 (592)
Q Consensus        30 ~~i-~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~  108 (592)
                      +++ ++.+|+++...++..+.+.++.++|.++.+++.||+|||+++..+.++..++.++..+.++.. .++.-++.|++.
T Consensus       283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~  361 (438)
T PRK10133        283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFM  361 (438)
T ss_pred             HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHH
Confidence            453 456899999999999999999999999999999999999999998888777766666666543 245567899999


Q ss_pred             hhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-hhHHHHHHHHHHH
Q 007702          109 GLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGVLSIPAL  173 (592)
Q Consensus       109 g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-Wr~~f~i~~i~~~  173 (592)
                      +..+|.......+..|.+ -+...++..... +|..+++  .......+..+ -|..|++..+..+
T Consensus       362 ~~i~P~~~s~a~~~~~~~-~~~as~l~~~~~-~g~~~~~--~i~G~l~~~~g~~~~~~~v~~~~~~  423 (438)
T PRK10133        362 SIQYPTIFSLGIKNLGQD-TKYGSSFIVMTI-IGGGIVT--PVMGFVSDAAGNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHHHHHHHHHcccchh-hccchhHHhHHh-ccchHHH--HHHHHHHHhccchHHHHHHHHHHHH
Confidence            999999999999988764 556666665443 3444432  22223334444 6777755444433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.45  E-value=4.9e-06  Score=90.09  Aligned_cols=138  Identities=17%  Similarity=0.192  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh
Q 007702           12 TIGNFLQGWDNATIAGAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW   90 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~   90 (592)
                      .+..++........+...+++.++ ++.+ ...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            334444555555555556665544 5544 67788888999999999999999999999999999999999999998888


Q ss_pred             hc--cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCc-------cccchhhHHHHHHHhhHHHHHHHHH
Q 007702           91 SP--NVYVLCIARLLDGFGVGLAVTLVPLYISETAPS-------EIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        91 s~--~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~-------~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      .+  +.+.+++.-++.|++.+...+...++++|+.+.       +..|...++..+...+|..++..+.
T Consensus       310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            76  999999999999999999999999999999873       3348888888888888887775543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.45  E-value=1.3e-05  Score=85.37  Aligned_cols=114  Identities=14%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhh
Q 007702           31 YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGL  110 (592)
Q Consensus        31 ~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~  110 (592)
                      ++.+++|.+..+.+.+.+...++.+++.++.+++.||+|||+.++++.++..++.++..+.++.+..++.-.+.+++.+.
T Consensus       229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  308 (392)
T PRK10473        229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSV  308 (392)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899998899999999999999999999999999999999999998888888877766555444444444444444


Q ss_pred             hhhHHHHHHHhhcCcccc-chhhHHHHHHHhhHHHHH
Q 007702          111 AVTLVPLYISETAPSEIR-GRLNTLPQFTGSGGMFLA  146 (592)
Q Consensus       111 ~~~~~~~~i~E~~p~~~R-g~~~~~~~~~~~~G~~l~  146 (592)
                      ..+.  .+..+..|.++| |...++..+...+|..++
T Consensus       309 ~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~  343 (392)
T PRK10473        309 GFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLW  343 (392)
T ss_pred             HhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHH
Confidence            3332  344556676555 334444443334444333

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.44  E-value=5.3e-06  Score=90.76  Aligned_cols=167  Identities=16%  Similarity=0.194  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHH--------HHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPML--------ILSSVLY   81 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~l--------i~~~~l~   81 (592)
                      ..+..+...+....+...+| ++.+.+|.+..+.++..++..++..++.++.|+++||+++|+..        ..+..+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  345 (465)
T TIGR00894       266 IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGL  345 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            33444444444444444444 46677899999999999999999999999999999998754321        1111111


Q ss_pred             --HHHHHHHHh-hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC
Q 007702           82 --FVSGLVMLW-SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS  158 (592)
Q Consensus        82 --~i~~~~~~~-s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~  158 (592)
                        .+..+.... ..+....++.-++.+.+.+...+.......|..|. .+|..+++.+....+|.++++.+.  ....+.
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~--g~~~~~  422 (465)
T TIGR00894       346 GPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLA--GNILSQ  422 (465)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhh--heeeCC
Confidence              111111122 23444444444555555555555544555677765 899999999999998888885332  332222


Q ss_pred             ---CchhHHHHHHHHHHHHHHHHHH
Q 007702          159 ---PSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       159 ---~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                         .+|+..|.+.++..++..++..
T Consensus       423 ~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       423 DSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHee
Confidence               3599999888877776554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.43  E-value=1.6e-05  Score=87.46  Aligned_cols=139  Identities=11%  Similarity=0.046  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHh----hhhh-cCchHHH--HHHHHHHHHHHHHHHh---------hccHHHHHHHHHHHHh
Q 007702           43 EGLVVAMSLIGATAITTCSGP----ISDW-LGRRPML--ILSSVLYFVSGLVMLW---------SPNVYVLCIARLLDGF  106 (592)
Q Consensus        43 ~gli~s~~~lg~~ig~~~~G~----l~Dr-~GRK~~l--i~~~~l~~i~~~~~~~---------s~~~~~ll~~R~l~G~  106 (592)
                      .+++.+...+..++.+++..+    +.+| .+.+...  .++.++.+++.+..++         ..+++++++..++.|+
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            667777777777777777554    4443 2333433  6788888887777664         4589999999999999


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhc
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFL  183 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~  183 (592)
                      |.....|....++++.+|++.||+.+++......+|..++..+...  .....+|...|...++..++..++.++..
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF--GAVPQGVTGVFGKIGLVTLLVGVVMALMV  468 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988444332  22345788888777777666555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.42  E-value=1.3e-05  Score=86.90  Aligned_cols=136  Identities=15%  Similarity=0.078  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh-h-----ccHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 007702           47 VAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW-S-----PNVYVLCIARLLDGFGVGLAVTLVPLYIS  120 (592)
Q Consensus        47 ~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~-s-----~~~~~ll~~R~l~G~~~g~~~~~~~~~i~  120 (592)
                      ..+..+...+..+++|+++||+|+|++++++.++.+++.+.... .     .+++.+++.-+...++.|.....+.-++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            33455777888899999999999999999998877776643222 2     24555555554444444544455555666


Q ss_pred             hhcCc---------------------cccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHH
Q 007702          121 ETAPS---------------------EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFA  179 (592)
Q Consensus       121 E~~p~---------------------~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~  179 (592)
                      ..+|.                     ++-|...++......+|.++.+.. ++.......++...|++..+..+++.++.
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~-~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  450 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQA-FGMSLNMTGSPVGAMKVFLIFYIVCVLLT  450 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHH-HHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence            66663                     134566777777777766665422 22222223457777877777777766666


Q ss_pred             Hhhc
Q 007702          180 VFFL  183 (592)
Q Consensus       180 ~~~~  183 (592)
                      +++.
T Consensus       451 w~~y  454 (462)
T PRK15034        451 WLVY  454 (462)
T ss_pred             HHHh
Confidence            6554

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.41  E-value=5.6e-06  Score=81.82  Aligned_cols=144  Identities=13%  Similarity=0.146  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      ...+++..+|+.+....+.....++  ..+++.||+++...+.+.+....-.++.+++.|.++|++|++...+.+.++..
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~t  341 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILT  341 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHH
Confidence            3456667777777666665555544  34889999999999999998888889999999999999999999888877665


Q ss_pred             HHH-HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702           83 VSG-LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        83 i~~-~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      +.. ....|+  ++.=.++-.+.|+.........+..++-+.|.++-|++-++.|...++|..+.+++.
T Consensus       342 l~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iia  408 (459)
T KOG4686|consen  342 LLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIA  408 (459)
T ss_pred             HHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhh
Confidence            443 333332  222234556778877776666777888899999999999999999999988775443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.41  E-value=7.4e-06  Score=85.67  Aligned_cols=145  Identities=19%  Similarity=0.245  Sum_probs=106.2

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc-------cH----HHHH
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP-------NV----YVLC   98 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~-------~~----~~ll   98 (592)
                      -+++.+|+++....+.+.+.+.+...+.-+..|+++||+|.++++.+...+++++.++..+.+       +.    ..++
T Consensus       243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  322 (417)
T COG2223         243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL  322 (417)
T ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999888887777653       33    3344


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHH
Q 007702           99 IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus        99 ~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l  178 (592)
                      ...+..|+|.|..+-..|.    ++|. +-|...++....+.+|.+.-+.. ++.......++...|++...+.++.+++
T Consensus       323 ~l~~~~G~GnGsvfk~Ip~----if~~-~~G~v~G~vga~G~lGGf~lp~~-~g~~~~~tg~~~~~f~~~~~~~~~a~v~  396 (417)
T COG2223         323 ALFVFAGLGNGSVFKMIPV----IFPK-ETGAVTGIVGAIGGLGGFFLPLA-FGVSLDLTGSYTGAFMLLLAFYLVALVL  396 (417)
T ss_pred             HHHHHhccCcchheeechH----HHHh-hhhHHHHHHHHhccccccchhHH-HHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            5566666666666554444    4444 56778888888888886554322 2323323336899998888877776654


Q ss_pred             HH
Q 007702          179 AV  180 (592)
Q Consensus       179 ~~  180 (592)
                      .+
T Consensus       397 ~~  398 (417)
T COG2223         397 TW  398 (417)
T ss_pred             HH
Confidence            43

>PRK11043 putative transporter; Provisional

Probab=98.41  E-value=4.4e-05  Score=81.62  Aligned_cols=118  Identities=19%  Similarity=0.140  Sum_probs=89.3

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH---Hh--hccHHHHHHHHH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM---LW--SPNVYVLCIARL  102 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~---~~--s~~~~~ll~~R~  102 (592)
                      ..|.+.+++|.+..+.++......++..+|.++.+.+.||+|+|+.+....++.+++.+..   .+  .++++.+++.-.
T Consensus       225 ~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (401)
T PRK11043        225 GSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFC  304 (401)
T ss_pred             HhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            4556667789999889988888888999999999999999999998766655554443322   12  345666666677


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHH
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLA  146 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~  146 (592)
                      +.|++.+...+....+..+..| ++||+..++.+.....+...+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~  347 (401)
T PRK11043        305 VMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLA  347 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHH
Confidence            8888888888888888878776 579999999887665555555

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.35  E-value=3.3e-07  Score=96.21  Aligned_cols=181  Identities=15%  Similarity=0.136  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH--------HH-HHHHHHHHHHHhhHHhhhhhcCchHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGL--------VV-AMSLIGATAITTCSGPISDWLGRRPMLIL   76 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gl--------i~-s~~~lg~~ig~~~~G~l~Dr~GRK~~li~   76 (592)
                      ..++..+..+|+.-+.....+.....+-+..++.+.....        .. -+...+.+.|..+...+.|++|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5566777777777777766666777788877764421111        11 12223334466778888999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHH
Q 007702           77 SSVLYFVSGLVMLWSPN--------VYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYC  148 (592)
Q Consensus        77 ~~~l~~i~~~~~~~s~~--------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~  148 (592)
                      +.+++.+..+..+...+        .....+..++.-+|-+   +...++.+|.+|++.|+..-++..+.+-.|.+++..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999888766        1223333344444332   344567799999999999999999999999998843


Q ss_pred             HHHHhHhcC-----CCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHH
Q 007702          149 MVFGMSLLA-----SPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLE  198 (592)
Q Consensus       149 ~~~~~~~~~-----~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~e  198 (592)
                      ..  .....     ..+.|..+++.+.+.++.. +..+++|||      |+|..|
T Consensus       461 ~F--~~~t~~~yp~~~g~~~v~~i~~~~~~~gi-~~T~l~pEt------k~~~le  506 (538)
T KOG0252|consen  461 GF--LYLTDHNYPPNIGVRNVFIILAGCMLLGI-LFTLLIPET------KGKSLE  506 (538)
T ss_pred             Hh--hHhhhccCCccccchHHHHHHHHHHHHhH-heeEEeecc------cccCHH
Confidence            33  33333     4578999998888887744 556778899      666554

>PRK09848 glucuronide transporter; Provisional

Probab=98.33  E-value=1.5e-05  Score=86.84  Aligned_cols=114  Identities=12%  Similarity=0.199  Sum_probs=80.9

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc----CchHHH-HHHHHHHHHHHHHHHhh-----cc--HH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL----GRRPML-ILSSVLYFVSGLVMLWS-----PN--VY   95 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~----GRK~~l-i~~~~l~~i~~~~~~~s-----~~--~~   95 (592)
                      ..+++++.+|++..+.|++.++..+..++..++.|.++||.    |||+.. +++.++..+..++....     ++  .+
T Consensus        31 l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (448)
T PRK09848         31 LLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV  110 (448)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence            44678888999999999999999999999999999999996    777755 55655555444443221     11  23


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCc-cccchhhHHHHHHHhh
Q 007702           96 VLCIARLLDGFGVGLAVTLVPLYISETAPS-EIRGRLNTLPQFTGSG  141 (592)
Q Consensus        96 ~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~-~~Rg~~~~~~~~~~~~  141 (592)
                      .+++.-++.+++.+...+...++..|..+. ++|....+.-+.+..+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~  157 (448)
T PRK09848        111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL  157 (448)
T ss_pred             HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence            344455667777777776666777777654 6788887776654343

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.30  E-value=4.1e-05  Score=84.74  Aligned_cols=142  Identities=14%  Similarity=0.070  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHhhH----HhhhhhcCchHHHHHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHhhhh
Q 007702           43 EGLVVAMSLIGATAITTCS----GPISDWLGRRPMLILSSVLYFVSGLVMLWSPN---------VYVLCIARLLDGFGVG  109 (592)
Q Consensus        43 ~gli~s~~~lg~~ig~~~~----G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~---------~~~ll~~R~l~G~~~g  109 (592)
                      .+++.++..+..++..++.    +++.+|++..+.+.++.++.+++.++.+++.+         .+++++..++.|++.+
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            4555666665555555555    66677777778888999999999888776644         5678889999999999


Q ss_pred             hhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhH---hc-----CCCchhHHHHHHHHHHHHHHHHHHh
Q 007702          110 LAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS---LL-----ASPSWRLMLGVLSIPALLYFAFAVF  181 (592)
Q Consensus       110 ~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~---~~-----~~~~Wr~~f~i~~i~~~~~~~l~~~  181 (592)
                      ...|....++.+.+|++.||+.++...+...+|..++....-...   ..     ...+....|...++..++..++.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~  477 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL  477 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888777633321110   00     0113567777666665554444444


Q ss_pred             hcc
Q 007702          182 FLP  184 (592)
Q Consensus       182 ~~p  184 (592)
                      ..|
T Consensus       478 ~~~  480 (500)
T PRK09584        478 TAP  480 (500)
T ss_pred             HHH
Confidence            333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.26  E-value=1.6e-07  Score=104.24  Aligned_cols=176  Identities=17%  Similarity=0.204  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      +..++..+.++...+.+...++.+++.|++++++.|++.+.+-++.++..++..++..|..|-+.+-++.++++++++++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~   85 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLF   85 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHH
Confidence            34455555567777777888899999999999999999999999999999999999999888888888999999998887


Q ss_pred             Hh--------------------------h------------------------ccHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007702           89 LW--------------------------S------------------------PNVYVLCIARLLDGFGVGLAVTLVPLY  118 (592)
Q Consensus        89 ~~--------------------------s------------------------~~~~~ll~~R~l~G~~~g~~~~~~~~~  118 (592)
                      ++                          .                        .-+..++++.++.|+|....+++..+|
T Consensus        86 ~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tY  165 (539)
T PF03137_consen   86 ALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITY  165 (539)
T ss_dssp             ------------------------------------------------------------------SSS-----------
T ss_pred             hccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeee
Confidence            73                          0                        014778889999999999999999999


Q ss_pred             HHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh-------cC---------CC----chhHHHHHHHHHHHHHHHH
Q 007702          119 ISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL-------LA---------SP----SWRLMLGVLSIPALLYFAF  178 (592)
Q Consensus       119 i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~-------~~---------~~----~Wr~~f~i~~i~~~~~~~l  178 (592)
                      +-|..+++.-+...++......+|..+|+++......       .+         ++    .|..-|.+.+++.++..+.
T Consensus       166 iDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aip  245 (539)
T PF03137_consen  166 IDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIP  245 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998988888666533210       00         11    3777777777776665544


Q ss_pred             HHhhccC
Q 007702          179 AVFFLPE  185 (592)
Q Consensus       179 ~~~~~pE  185 (592)
                       +++.|+
T Consensus       246 -l~~FPk  251 (539)
T PF03137_consen  246 -LFFFPK  251 (539)
T ss_dssp             -------
T ss_pred             -HHcCCc
Confidence             344443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.24  E-value=1.3e-05  Score=84.26  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=85.8

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHh--hc--cHHHHHHHHHHH
Q 007702           29 IVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW--SP--NVYVLCIARLLD  104 (592)
Q Consensus        29 ~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~--s~--~~~~ll~~R~l~  104 (592)
                      ..++++.++.+..+.+++.+...++.+++.++.|+++||+|||+.+..+.++..++.++..+  .+  +.+.+++.-++.
T Consensus       249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (366)
T TIGR00886       249 AMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVAL  328 (366)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            34566778999999999999999999999999999999999998888777766666555543  22  555555555556


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhH
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGG  142 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G  142 (592)
                      ++..|...+....+++|.+| +++|...++.+....+|
T Consensus       329 ~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       329 FFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            66666666667777888887 68999999877665554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.18  E-value=1.4e-05  Score=65.24  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHH
Q 007702           18 QGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVL   97 (592)
Q Consensus        18 ~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~l   97 (592)
                      .|+..+.+.|.+|.+.++.+++.++.+++.+...+|+.+|++....+.++..+++.+..+.++..+..+.+++.++++.+
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            57788899999999999999999999999999999999999999999999888999999999999999999999887655


Q ss_pred             H
Q 007702           98 C   98 (592)
Q Consensus        98 l   98 (592)
                      .
T Consensus        84 ~   84 (85)
T PF06779_consen   84 S   84 (85)
T ss_pred             h
Confidence            3

Note that many members are hypothetical proteins.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.15  E-value=2.2e-05  Score=85.36  Aligned_cols=166  Identities=20%  Similarity=0.291  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHH----HHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH
Q 007702           14 GNFLQGWDNATIAGAIVYIKKDLNLGT-TVEGLVVAMS----LIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM   88 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~i~~~~~~s~-~~~gli~s~~----~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~   88 (592)
                      -.|..+.......+..++....++.+. ...+......    .+..++.+++.|.++||+|||..+....+...+..++.
T Consensus        30 ~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~  109 (463)
T KOG2816|consen   30 YMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCL  109 (463)
T ss_pred             HHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHH
Confidence            333334434334444444455554433 2333333333    56777889999999999999999999999999988888


Q ss_pred             HhhccHHHHHHHHHHHHhhh--hhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHH
Q 007702           89 LWSPNVYVLCIARLLDGFGV--GLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLG  166 (592)
Q Consensus        89 ~~s~~~~~ll~~R~l~G~~~--g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~  166 (592)
                      .+..  +++++   +.++..  +.....+.+|+++....+.|....++.......+..++  +..+.......+.-.+|.
T Consensus       110 ~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~--p~~~~~~~~~~~~a~~f~  182 (463)
T KOG2816|consen  110 LFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIG--PALGGYLVKFLGIALVFL  182 (463)
T ss_pred             HHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHhcCchHHHH
Confidence            7776  33333   444433  33456677899999999999999999988777777777  444444445567888898


Q ss_pred             HHHHHHHHHHHHHHhhccCC
Q 007702          167 VLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       167 i~~i~~~~~~~l~~~~~pEs  186 (592)
                      +..+..++..+..++++||+
T Consensus       183 ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  183 IAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHHHHHHHHHhhccccc
Confidence            98888888888889999998

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.15  E-value=5e-05  Score=80.77  Aligned_cols=172  Identities=17%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH--HHHHHH
Q 007702           12 TIGNFLQGWDNATIAGAIVYIK-KDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF--VSGLVM   88 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~~i~-~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~--i~~~~~   88 (592)
                      ++..+.+.+.+++..+..+..- ++-|++.++.|.+.++..+..++.+++.|.++||+|.||-+++...+..  .+.+..
T Consensus        13 s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~   92 (412)
T PF01306_consen   13 SLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFI   92 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4445555556777777776655 4589999999999999999999999999999999997776654433322  232222


Q ss_pred             -Hhhc----cH-HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchh
Q 007702           89 -LWSP----NV-YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWR  162 (592)
Q Consensus        89 -~~s~----~~-~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr  162 (592)
                       .+.|    |. ...+++-+..|++.....|+.-+|+....-.  .+.--|-.-+++++|..++..+.  +.+.+ .+-.
T Consensus        93 ~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~feYG~~R~wGSig~ai~s~~~--G~L~~-i~p~  167 (412)
T PF01306_consen   93 YVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NGFEYGRARMWGSIGFAIASLLA--GILFN-INPN  167 (412)
T ss_dssp             HTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HSS-HHHHHHHHHHHHHHHHHHH--HHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hcCCcchHHHHhhHHHHHHHHHh--heeee-eCcc
Confidence             2222    22 2233333334444444555555555444322  12222223345555555543222  22221 2446


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          163 LMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       163 ~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      ..|++..+.+++..++.++..|+.|+
T Consensus       168 ~~fwi~s~~~~il~lll~~~~~~~~~  193 (412)
T PF01306_consen  168 IIFWIASAAAIILLLLLLLLKPDVPP  193 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcCch
Confidence            67777776666655555555555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.13  E-value=8.1e-05  Score=80.14  Aligned_cols=175  Identities=15%  Similarity=0.223  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh----cCchH-HHHHHHHHHHHHHHH
Q 007702           14 GNFLQGWDNATIAGAI-VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW----LGRRP-MLILSSVLYFVSGLV   87 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~-~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr----~GRK~-~li~~~~l~~i~~~~   87 (592)
                      +.+............+ -++...+|+++...|.+..+.-+--++.-|+.|.+.||    +||+| .++++.+..++.+.+
T Consensus        20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l   99 (467)
T COG2211          20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL   99 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence            3444444444444433 45778899999999999999999999999999999995    78554 556677888888888


Q ss_pred             HHhhcc------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcC-ccccchhhHHHHHHHhhHHHHHHHHHHHh-H-hcC-
Q 007702           88 MLWSPN------VYVLCIARLLDGFGVGLAVTLVPLYISETAP-SEIRGRLNTLPQFTGSGGMFLAYCMVFGM-S-LLA-  157 (592)
Q Consensus        88 ~~~s~~------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-~-~~~-  157 (592)
                      +..+++      ....++.-.+.+++.........++.+|+.+ +++|.++.+.-+.+..+|.++........ . ... 
T Consensus       100 ~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~  179 (467)
T COG2211         100 LFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG  179 (467)
T ss_pred             HHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888763      4455566677777777776667788889887 68899999999999999976664433222 2 222 


Q ss_pred             --CCchhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          158 --SPSWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       158 --~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                        ..+|+..-++.+++.++.++++++-..|.+.
T Consensus       180 ~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~  212 (467)
T COG2211         180 DKALGYQGTALVLGVIGVILLLFCFFNVKERVV  212 (467)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence              3489999999999988888888888888654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.12  E-value=1.6e-07  Score=92.41  Aligned_cols=144  Identities=14%  Similarity=0.059  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLY   81 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~   81 (592)
                      ++...++..|+-.|...+.....+....+++++.+++.++..++-++|..-..+-+++.|++.|| +|-|..-++-++..
T Consensus        41 hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv  120 (459)
T KOG4686|consen   41 HRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFV  120 (459)
T ss_pred             hHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHH
Confidence            45666777777777777777777777788899999999899999999999999999999999997 68888777777777


Q ss_pred             HHHHHHHHh---hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHH
Q 007702           82 FVSGLVMLW---SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLA  146 (592)
Q Consensus        82 ~i~~~~~~~---s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~  146 (592)
                      .++.++++.   ++.+|+++++|++.|+|.-....+-..|+.-++..|+-+..+++......+|..+-
T Consensus       121 ~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvN  188 (459)
T KOG4686|consen  121 FLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVN  188 (459)
T ss_pred             HHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceee
Confidence            788777764   68999999999999998877777778899999999999998888776666776543

>PRK11462 putative transporter; Provisional

Probab=98.11  E-value=0.0005  Score=75.30  Aligned_cols=124  Identities=17%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHH
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP--NVYVLCIAR  101 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~--~~~~ll~~R  101 (592)
                      ..+....++.+...-.....+.+...+.++.+++.+++++++||+|+|+++..+.++.++..++..+.+  +...+++.-
T Consensus       246 ~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (460)
T PRK11462        246 VRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFI  325 (460)
T ss_pred             HHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            333344444444332334456677788889999999999999999999988766555544444443332  233344555


Q ss_pred             HHHHhhhhhhhhHHHHHHHhhcCc-----ccc--chhhHHHHHHHhhHHHHHH
Q 007702          102 LLDGFGVGLAVTLVPLYISETAPS-----EIR--GRLNTLPQFTGSGGMFLAY  147 (592)
Q Consensus       102 ~l~G~~~g~~~~~~~~~i~E~~p~-----~~R--g~~~~~~~~~~~~G~~l~~  147 (592)
                      ++.|++.+...+....+++|...-     ..|  |...+...+..-+|..++.
T Consensus       326 ~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~  378 (460)
T PRK11462        326 FVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGG  378 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            667887777777667777777662     233  4444554455555555553

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.08  E-value=0.00043  Score=73.79  Aligned_cols=118  Identities=18%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH-HHHHHHHh--hccHHHHHHHHHHHHhh
Q 007702           31 YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF-VSGLVMLW--SPNVYVLCIARLLDGFG  107 (592)
Q Consensus        31 ~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~-i~~~~~~~--s~~~~~ll~~R~l~G~~  107 (592)
                      ++.+.+|.+..+.+++.....++..++.++.+++.||++++........+.. +..+...+  ..+.+.+.+..++.|++
T Consensus       233 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  312 (394)
T PRK11652        233 LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFG  312 (394)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            4555689999889999888899999999999999999984333322222222 21111122  23566777788999999


Q ss_pred             hhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702          108 VGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus       108 ~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      .+...+....+..|.+| +.+|...++.+....+|..++..+
T Consensus       313 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~  353 (394)
T PRK11652        313 AGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALL  353 (394)
T ss_pred             HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987 578999999888888888887433

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.07  E-value=0.00023  Score=76.63  Aligned_cols=134  Identities=20%  Similarity=0.216  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhc
Q 007702           14 GNFLQGWDNATIAGAIVYIK-KDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSP   92 (592)
Q Consensus        14 ~~~~~g~~~~~~~~~~~~i~-~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~   92 (592)
                      ..++........+....++. -..+.+.....+.......+.+++.++...+++|+|+|+++.++.++.+++.++..+.+
T Consensus       244 ~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         244 MNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444444444444444432 23444556666777777788888899999999999999999999999999999998875


Q ss_pred             --cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCc-----ccc--chhhHHHHHHHhhHHHHHH
Q 007702           93 --NVYVLCIARLLDGFGVGLAVTLVPLYISETAPS-----EIR--GRLNTLPQFTGSGGMFLAY  147 (592)
Q Consensus        93 --~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~-----~~R--g~~~~~~~~~~~~G~~l~~  147 (592)
                        +.+.+++..++.+++.+...+..+++++|+..-     ..|  |...+...++.=+|..++.
T Consensus       324 ~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~  387 (467)
T COG2211         324 AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAG  387 (467)
T ss_pred             CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHH
Confidence              788889999999999999999999998877542     223  6666776666667766654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.07  E-value=0.0002  Score=78.32  Aligned_cols=143  Identities=8%  Similarity=-0.038  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHhhHHhhhhhcCc-hHHHHHHHHHHHHHHHHHHhhcc---------------------HHHHHHHHH
Q 007702           45 LVVAMSLIGATAITTCSGPISDWLGR-RPMLILSSVLYFVSGLVMLWSPN---------------------VYVLCIARL  102 (592)
Q Consensus        45 li~s~~~lg~~ig~~~~G~l~Dr~GR-K~~li~~~~l~~i~~~~~~~s~~---------------------~~~ll~~R~  102 (592)
                      +....+.+...+.+++..++.+++|+ |++..++.++.+++.+...+.++                     .+..++.-.
T Consensus       309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (477)
T TIGR01301       309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFA  388 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHH
Confidence            44445555555777788899999995 77778888888877776665432                     366777888


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCcc--ccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSE--IRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      +.|+..+....+-++++++..|++  ..|..+++.+.+..+.+++..+...........+-..++.+.++..++..++.+
T Consensus       389 ~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~  468 (477)
T TIGR01301       389 ILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLAL  468 (477)
T ss_pred             HhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999964  449999999999999998876433221111122446677788888888888888


Q ss_pred             hhccCCh
Q 007702          181 FFLPESP  187 (592)
Q Consensus       181 ~~~pEsP  187 (592)
                      +.+|.+|
T Consensus       469 ~~~~~~~  475 (477)
T TIGR01301       469 ILLPRPR  475 (477)
T ss_pred             HhCCCCC
Confidence            9999864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.06  E-value=0.00038  Score=71.74  Aligned_cols=157  Identities=22%  Similarity=0.256  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 007702           22 NATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFVSGLVMLWSPNVYVLCIA  100 (592)
Q Consensus        22 ~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~  100 (592)
                      .+.+-..+|.+..|-|++..+.|+..+...+.....++....+++|. .+|+..+..++++.++.+.+.+.|.-..++- 
T Consensus       224 ~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-  302 (395)
T COG2807         224 YYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-  302 (395)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-
Confidence            34445577889999999999999999999999999999999999964 7888888888888888888878765433333 


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCcc-ccchhhHHHHHHHhhHHHHHHHHH-HHhHh-cCCCchhHHHHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSE-IRGRLNTLPQFTGSGGMFLAYCMV-FGMSL-LASPSWRLMLGVLSIPALLYFA  177 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~-~Rg~~~~~~~~~~~~G~~l~~~~~-~~~~~-~~~~~Wr~~f~i~~i~~~~~~~  177 (592)
                      -++.|++.|..++.+..++..-++.. +-+...++.|   .+|..++.+-. +.+.+ ....+|+.+........++..+
T Consensus       303 ~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQ---g~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i  379 (395)
T COG2807         303 ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQ---GVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLI  379 (395)
T ss_pred             HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhh---hhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHH
Confidence            48999999999999999998887754 4466666655   44554443222 22333 3345899999887777776555


Q ss_pred             HHHhh
Q 007702          178 FAVFF  182 (592)
Q Consensus       178 l~~~~  182 (592)
                      ..+..
T Consensus       380 ~Gl~a  384 (395)
T COG2807         380 FGLRA  384 (395)
T ss_pred             HHhhc
Confidence            54443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.05  E-value=0.00031  Score=64.82  Aligned_cols=108  Identities=22%  Similarity=0.206  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhc
Q 007702           44 GLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETA  123 (592)
Q Consensus        44 gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~  123 (592)
                      ..-.++......+.+++.+.+.+++|.|+.++++.+.+.+-.+.. +-++.+.++.+-.+.|++.+..++....|+.+..
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s  118 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS  118 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence            334455666677888889999999999999999999988665543 5677888999999999999999999999999999


Q ss_pred             CccccchhhHHHHHHHhhHHHHHHHHHHH
Q 007702          124 PSEIRGRLNTLPQFTGSGGMFLAYCMVFG  152 (592)
Q Consensus       124 p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~  152 (592)
                      .++.|++..++.-.....+.++|.+..+.
T Consensus       119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  119 TEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             CHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998887666666666666444433

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00788 fbt folate/biopterin transporter

Probab=98.04  E-value=4.6e-05  Score=83.65  Aligned_cols=116  Identities=13%  Similarity=0.083  Sum_probs=99.0

Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh----------ccHHHHHHHHHH
Q 007702           34 KDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS----------PNVYVLCIARLL  103 (592)
Q Consensus        34 ~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s----------~~~~~ll~~R~l  103 (592)
                      ..+|.++...|++.+...++.+++..+.+.+.+|++.|+++.++.++.+++.+...+.          ++.+.++..-++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            4678899999999999999999999999999999999999999999998887554311          333455566788


Q ss_pred             HHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702          104 DGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus       104 ~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      .+++.+........++++.+|++.+|...++.+...++|..++...
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~  406 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFL  406 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999889998888543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.03  E-value=0.00014  Score=82.63  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHHHHHHHHHHhhcc--------HHH
Q 007702           26 AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYFVSGLVMLWSPN--------VYV   96 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~~i~~~~~~~s~~--------~~~   96 (592)
                      .....++.+.++++.+....+...+....-+.++++|.++|+ +||+++++++.+++.++.++.+++..        ...
T Consensus         8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926         8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            345566778899998888888888888888889999999997 69999999999999999888776421        234


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcCccc---cchhhHHHHHHHhhHHHHHHHHHHHhH-h----cCCCchhHHHHHH
Q 007702           97 LCIARLLDGFGVGLAVTLVPLYISETAPSEI---RGRLNTLPQFTGSGGMFLAYCMVFGMS-L----LASPSWRLMLGVL  168 (592)
Q Consensus        97 ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~~~-~----~~~~~Wr~~f~i~  168 (592)
                      .+++-.+..+|.|+.-+...+...|.+++++   |-....++..++++|.+++..+.-... .    ....+|...|.+.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~  167 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVP  167 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHH
Confidence            6677788888999999999999999998654   445666677778888877744432221 1    1245799999988


Q ss_pred             HHHHHHHHHHHH
Q 007702          169 SIPALLYFAFAV  180 (592)
Q Consensus       169 ~i~~~~~~~l~~  180 (592)
                      ++..++.+++.+
T Consensus       168 ~i~m~ia~lvf~  179 (654)
T TIGR00926       168 AILMILALIVFM  179 (654)
T ss_pred             HHHHHHHHHHHH
Confidence            888777655443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.99  E-value=0.00027  Score=78.05  Aligned_cols=139  Identities=13%  Similarity=0.135  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhhcCchHH-------HHHHHHHHHHHHHHHH-----hh-----ccHHHHHHHHHHHH
Q 007702           43 EGLVVAMSLIGATAITTCSGPISDWLGRRPM-------LILSSVLYFVSGLVML-----WS-----PNVYVLCIARLLDG  105 (592)
Q Consensus        43 ~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~-------li~~~~l~~i~~~~~~-----~s-----~~~~~ll~~R~l~G  105 (592)
                      .+++.+...+..++.+++.+.+.||+|+|+.       +.++.++.+++.+..+     ++     .++++++..-++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            3556666667787888889999999999973       6677777666654321     21     35677888899999


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC--------CCchhHHHHHHHHHHHHHHH
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA--------SPSWRLMLGVLSIPALLYFA  177 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~--------~~~Wr~~f~i~~i~~~~~~~  177 (592)
                      +|.+...+....++.+.+|++.+|.++++.++...+|..++..+.-......        .....+.|...++..++..+
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v  470 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAV  470 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888888888743332111100        11345666666665555444


Q ss_pred             HHHh
Q 007702          178 FAVF  181 (592)
Q Consensus       178 l~~~  181 (592)
                      +.++
T Consensus       471 ~~~~  474 (489)
T PRK10207        471 VMAL  474 (489)
T ss_pred             HHHH
Confidence            4333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.97  E-value=0.00048  Score=74.24  Aligned_cols=107  Identities=7%  Similarity=-0.097  Sum_probs=81.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHH
Q 007702           37 NLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVP  116 (592)
Q Consensus        37 ~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~  116 (592)
                      +.+....+...+.+..+..+|.++++++.||+++|+++.++.++.++..++..+.++... ++.-++.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            444455566777777888999999999999999999999999999998888888777544 4566778888888889999


Q ss_pred             HHHHhhcCccccchhhHHHHHHHhhHHHHH
Q 007702          117 LYISETAPSEIRGRLNTLPQFTGSGGMFLA  146 (592)
Q Consensus       117 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~  146 (592)
                      ....+..+++.+.....+ ..+. +|..+.
T Consensus       344 sl~~~~~g~~~~~~s~~l-~~~~-~Gga~~  371 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGL-VMAI-IGGGIV  371 (410)
T ss_pred             HHHHhhhhhhhhhhHHHH-HHHH-hccchH
Confidence            999999987765333333 2333 555555

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.95  E-value=0.00042  Score=77.05  Aligned_cols=132  Identities=27%  Similarity=0.308  Sum_probs=98.6

Q ss_pred             HHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHH---HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccc
Q 007702           53 GATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVY---VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRG  129 (592)
Q Consensus        53 g~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~---~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg  129 (592)
                      .........+.+.|++|||..+..+.++..++.++.++.+...   ...+...+..++.+..+.+.+.+.+|..|+..|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            3444555567899999999999999999999999999876543   3566667777777778888899999999999999


Q ss_pred             hhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCCh
Q 007702          130 RLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESP  187 (592)
Q Consensus       130 ~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP  187 (592)
                      .+.+.......+|.++++.+.+.... ....+....  .+....+..++..+++||+.
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLIL--FGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHH--HHHHHHHHHHHHHhcCcccC
Confidence            99999999999999998766644322 222222222  34444454556668999983

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.95  E-value=0.00029  Score=74.05  Aligned_cols=171  Identities=15%  Similarity=0.202  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHH-HHHHHHHHHHHHHHhhcc--H-HHHHHHHHHHHhhhhhhhhHHH
Q 007702           41 TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI-LSSVLYFVSGLVMLWSPN--V-YVLCIARLLDGFGVGLAVTLVP  116 (592)
Q Consensus        41 ~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li-~~~~l~~i~~~~~~~s~~--~-~~ll~~R~l~G~~~g~~~~~~~  116 (592)
                      +..+...++..+-.++-+++.|-++|+.|+||..+ ....+.+++.++..++++  + +..++.-.+..++........-
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            56788888888888899999999999999666555 445556666677777654  4 4444556677777777777788


Q ss_pred             HHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHh-c---------------CCCchhHHHHHHHHHHHHHHHHHH
Q 007702          117 LYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSL-L---------------ASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       117 ~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~-~---------------~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      +++.++.+++.-++..++-....-+|..+..+.++.... .               +...-|..+.+.++..++..+..+
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~  217 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMI  217 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHH
Confidence            999999999888888777666666676665444433321 1               334578888888888877777777


Q ss_pred             hhccCChhH-----HHhcCcHHHHHHHHHHHhCCCC
Q 007702          181 FFLPESPRW-----LVSKGKMLEAKQVLQRLRGRED  211 (592)
Q Consensus       181 ~~~pEsP~~-----l~~~~~~~ea~~~l~~l~~~~~  211 (592)
                      +..|+.|+-     -.-++..+|-++.++.++++++
T Consensus       218 ~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~  253 (438)
T COG2270         218 LNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKN  253 (438)
T ss_pred             hcccccccccccchHHHHHHHHHHHHHHHHHhcccc
Confidence            777766531     0112334445555566555553

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.94  E-value=0.00015  Score=78.73  Aligned_cols=157  Identities=23%  Similarity=0.263  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC-----chHHHHHHHHHHHHHHHHHHhh----ccHHH
Q 007702           26 AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG-----RRPMLILSSVLYFVSGLVMLWS----PNVYV   96 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G-----RK~~li~~~~l~~i~~~~~~~s----~~~~~   96 (592)
                      ....+++++++++++.+...+.+...+...+ .++.|.++|-+-     ||+-++++.++..++.+..+..    .+...
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~   88 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAI   88 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhh
Confidence            3466789999999999888888887776655 677899999863     6666667777776666655553    34666


Q ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHhhcC--ccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHH
Q 007702           97 LCIARLLDGFGVGLAVTLVPLYISETAP--SEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALL  174 (592)
Q Consensus        97 ll~~R~l~G~~~g~~~~~~~~~i~E~~p--~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~  174 (592)
                      ..+.-++..++......++-++..|...  ++.||...+.......+|.+++..  +.+...+..+++..|.+.+++..+
T Consensus        89 ~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~--l~G~l~~~~~~~~~f~i~~~~~~l  166 (433)
T PF03092_consen   89 AVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSL--LSGPLLDSFGPQGVFLISAALPLL  166 (433)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH--hhhhhhhcCCCeEEehHHHHHHHH
Confidence            6677788888888888888899999984  334788888888888889888843  344556667888899888888777


Q ss_pred             HHHHHHhhccC
Q 007702          175 YFAFAVFFLPE  185 (592)
Q Consensus       175 ~~~l~~~~~pE  185 (592)
                      ..+..++..+|
T Consensus       167 ~~~~~~~~~~e  177 (433)
T PF03092_consen  167 MLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHhhhh
Confidence            66666677666

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.92  E-value=5.7e-05  Score=81.13  Aligned_cols=158  Identities=19%  Similarity=0.167  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 007702           19 GWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLC   98 (592)
Q Consensus        19 g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll   98 (592)
                      |...+.+...+=--.++.+-.+...|........|-++.-++++.+..++|+-+++.+++....+=.+...+..|.|+.+
T Consensus       384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vL  463 (618)
T KOG3762|consen  384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVL  463 (618)
T ss_pred             HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchhee
Confidence            33333333333334567776677788777777888888899999999999999999999998888888888889999999


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHH-HhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHH
Q 007702           99 IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFT-GSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFA  177 (592)
Q Consensus        99 ~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~-~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~  177 (592)
                      -.-+++|+..+..+.++..|++..+||+.|..+.++.+.. ..+|-.+|.  ..++......+=|..|.+.++.+++.++
T Consensus       464 Pieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~Gs--lIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  464 PIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGS--LIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhh--hhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999987753 445555553  3344555667778888877777666544


Q ss_pred             H
Q 007702          178 F  178 (592)
Q Consensus       178 l  178 (592)
                      +
T Consensus       542 ~  542 (618)
T KOG3762|consen  542 L  542 (618)
T ss_pred             H
Confidence            3

>TIGR01272 gluP glucose/galactose transporter

Probab=97.89  E-value=1.6e-05  Score=82.29  Aligned_cols=97  Identities=15%  Similarity=0.015  Sum_probs=76.4

Q ss_pred             hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC------------
Q 007702           90 WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA------------  157 (592)
Q Consensus        90 ~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~------------  157 (592)
                      ...+++.++++-++.|.|.+...+.+..|++++.|++.+.+.+++.+.+..+|.++++.+........            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999977765544221            


Q ss_pred             --CCchhHHHHHHHHHHHHHHHHH-HhhccCC
Q 007702          158 --SPSWRLMLGVLSIPALLYFAFA-VFFLPES  186 (592)
Q Consensus       158 --~~~Wr~~f~i~~i~~~~~~~l~-~~~~pEs  186 (592)
                        ...|+++|++.+++.++..++. +.-+||.
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~  117 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPEL  117 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence              1479999986666544434332 2334654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.80  E-value=6.8e-05  Score=84.26  Aligned_cols=180  Identities=17%  Similarity=0.210  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH
Q 007702            6 LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG   85 (592)
Q Consensus         6 ~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~   85 (592)
                      ..++++++..+.++...+.+...+..+.+.|++++++.|++.+.+-+|..+...+..+..-|.-|-+.+-++.+++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            34566777788888888888888999999999999999999999999999999999999999888888889999999999


Q ss_pred             HHHHhh--------------------c--------------------------------cHHHHHHHHHHHHhhhhhhhh
Q 007702           86 LVMLWS--------------------P--------------------------------NVYVLCIARLLDGFGVGLAVT  113 (592)
Q Consensus        86 ~~~~~s--------------------~--------------------------------~~~~ll~~R~l~G~~~g~~~~  113 (592)
                      +++++-                    +                                -+.+++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            988740                    0                                023677889999999999999


Q ss_pred             HHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhH--hcCC-----------C----chhHHHHHHHHHHHHHH
Q 007702          114 LVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS--LLAS-----------P----SWRLMLGVLSIPALLYF  176 (592)
Q Consensus       114 ~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~--~~~~-----------~----~Wr~~f~i~~i~~~~~~  176 (592)
                      +...|+-|....+.-....++......+|-++|++++-...  ..+.           +    .|..-|++.+.+.++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988876664432  1111           1    37778888888877766


Q ss_pred             HHHHhhccCC
Q 007702          177 AFAVFFLPES  186 (592)
Q Consensus       177 ~l~~~~~pEs  186 (592)
                      +. +|++|..
T Consensus       337 ~p-~f~fPk~  345 (735)
T KOG3626|consen  337 VP-LFFFPKE  345 (735)
T ss_pred             HH-HHhCccc
Confidence            55 4555543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=9.1e-05  Score=76.95  Aligned_cols=158  Identities=16%  Similarity=0.158  Sum_probs=119.6

Q ss_pred             HHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC--chHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 007702           22 NATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG--RRPMLILSSVLYFVSGLVMLWSPNVYVLC   98 (592)
Q Consensus        22 ~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G--RK~~li~~~~l~~i~~~~~~~s~~~~~ll   98 (592)
                      .+..-|.++. +.+.+..+..+.|+..--..+.+.+++.+.|.++||++  |-.....+.++..+++....+++++..++
T Consensus       286 lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~  365 (464)
T KOG3764|consen  286 LAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLW  365 (464)
T ss_pred             HHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHh
Confidence            3334444444 56667755567787777788899999999999999999  65555566666677777888899999999


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHhhcCc---c---ccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHH
Q 007702           99 IARLLDGFGVGLAVTLVPLYISETAPS---E---IRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPA  172 (592)
Q Consensus        99 ~~R~l~G~~~g~~~~~~~~~i~E~~p~---~---~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~  172 (592)
                      +-++..+++.+...+.......++...   +   .-|..-++.+.++++|..++  +.++.......|++|...+.++..
T Consensus       366 vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~G--P~~gg~iv~~iGF~wl~~iig~~n  443 (464)
T KOG3764|consen  366 VPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIG--PTFGGSLVEAIGFEWLMTIIGILN  443 (464)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhcc--ccccchheeehhHHHHHHHHHHHH
Confidence            999999999888877655544444433   3   45777888889999999998  666777788889999988888888


Q ss_pred             HHHHHHHHh
Q 007702          173 LLYFAFAVF  181 (592)
Q Consensus       173 ~~~~~l~~~  181 (592)
                      +++..++.+
T Consensus       444 ~iyapvl~l  452 (464)
T KOG3764|consen  444 LIYAPVLLL  452 (464)
T ss_pred             HHHHHHHHH
Confidence            776655433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.75  E-value=0.0025  Score=67.15  Aligned_cols=117  Identities=21%  Similarity=0.181  Sum_probs=91.4

Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC-----chHHHHHH-HHHHHHHHHHHHhh-----c--------
Q 007702           32 IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG-----RRPMLILS-SVLYFVSGLVMLWS-----P--------   92 (592)
Q Consensus        32 i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G-----RK~~li~~-~~l~~i~~~~~~~s-----~--------   92 (592)
                      +..|++++....+..+++..+.+.+ .+..|+.+|+.+     ||..+++. .+++..+..+..++     .        
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap~-R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~   84 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAPL-RVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP   84 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHH-HHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence            5678999999999999998887664 788999999999     88777654 55555554444431     2        


Q ss_pred             cH---HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHH
Q 007702           93 NV---YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM  149 (592)
Q Consensus        93 ~~---~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~  149 (592)
                      .+   ....+.-++.|++.+...+...++++|.+|+++|++..++...+..+|..++.+.
T Consensus        85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~  144 (403)
T PF03209_consen   85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIV  144 (403)
T ss_pred             cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            22   2334456778889988889999999999999999999999999999999988543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.72  E-value=0.00028  Score=56.97  Aligned_cols=71  Identities=17%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      +...+++.....+.+.|.++...++.|++..+.|++.++..+...++++++|.++||+|+++.++....++
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34445555566667777777778889999999999999999999999999999999999999888766554

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.67  E-value=0.00055  Score=74.71  Aligned_cols=170  Identities=19%  Similarity=0.220  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCc---------hHHHHHH
Q 007702            8 AIAATIGNFLQGWDNATIAGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGR---------RPMLILS   77 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GR---------K~~li~~   77 (592)
                      ++++.++.+...+...++....| |+++.+|.+..+.|++.++..+...+..+++|.++||.=+         |..-.++
T Consensus       260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~  339 (466)
T KOG2532|consen  260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA  339 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence            44555556666666555555554 5788899999999999999999999999999999998855         2222233


Q ss_pred             HHHHHHHHHHHHhhcc--H----HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHH
Q 007702           78 SVLYFVSGLVMLWSPN--V----YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVF  151 (592)
Q Consensus        78 ~~l~~i~~~~~~~s~~--~----~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~  151 (592)
                      ....+++.++.++.+.  .    ..+.++-.+.|+..++.+..    ..+. .|++-+.++++.+....+..++++.+.-
T Consensus       340 ~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg  414 (466)
T KOG2532|consen  340 FGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKN----HQDI-APQHAGFVMGIINFVGALAGFIAPLLVG  414 (466)
T ss_pred             HHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhh----hhhc-cchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            3344444444455442  1    11222223333333333221    2222 4566789999999999998888854432


Q ss_pred             HhHhc-CCCchhHHHHHHHHHHHHHHHHHHhh
Q 007702          152 GMSLL-ASPSWRLMLGVLSIPALLYFAFAVFF  182 (592)
Q Consensus       152 ~~~~~-~~~~Wr~~f~i~~i~~~~~~~l~~~~  182 (592)
                      ..... +...||++|.+.+++.++..++..++
T Consensus       415 ~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  415 IIVTDNTREEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             eEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence            22211 23489999999988887766443333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.65  E-value=0.00047  Score=75.60  Aligned_cols=159  Identities=13%  Similarity=0.080  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh----cCchHHHHHHHHHHH
Q 007702            8 AIAATIGNFLQGWDNATIAGAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDW----LGRRPMLILSSVLYF   82 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr----~GRK~~li~~~~l~~   82 (592)
                      ++..++..+........+...+|.+.++ .+.+..+.+++...+.++.+++.+++|+++||    ..+|..++..+.++.
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~  354 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYA  354 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            3445566666677777777788877766 56888999999999999999999999999999    778887777777766


Q ss_pred             HHH-HHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhH-HHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           83 VSG-LVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNT-LPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        83 i~~-~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~-~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                      +.. +...+..+......+-+....+.+...+++...+++...++.|..... ....+.+.+..+++ ..+.....+...
T Consensus       355 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~-~~~~~~~ap~y~  433 (495)
T KOG2533|consen  355 IIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG-QLFRSLDAPRYG  433 (495)
T ss_pred             HHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh-hhcccccCcchh
Confidence            555 444445444444444455555566666777777777776666544333 33333333333321 222222333457


Q ss_pred             hhHHHHH
Q 007702          161 WRLMLGV  167 (592)
Q Consensus       161 Wr~~f~i  167 (592)
                      |-..|..
T Consensus       434 ~~~~f~~  440 (495)
T KOG2533|consen  434 WGAVFYM  440 (495)
T ss_pred             hhhHHHH
Confidence            7777743

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.63  E-value=0.0054  Score=66.12  Aligned_cols=119  Identities=8%  Similarity=0.022  Sum_probs=73.5

Q ss_pred             HHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH-----hhccHHHHHHH
Q 007702           27 GAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML-----WSPNVYVLCIA  100 (592)
Q Consensus        27 ~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~-----~s~~~~~ll~~  100 (592)
                      ...|. +++.+|.+..+.++.......+..++..+.+.+.++.++++.+.....+..++.++..     ..++++.+++.
T Consensus       239 ~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~  318 (413)
T PRK15403        239 AVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLG  318 (413)
T ss_pred             HhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHH
Confidence            34454 5566799999999988888888888888888876554444443332333333332222     12344445677


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLA  146 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~  146 (592)
                      .++.++|.+...+......- ......+|+..++.......+..++
T Consensus       319 ~~l~~~G~~~~~p~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~  363 (413)
T PRK15403        319 TSLYAFGIGLIFPTLFRFTL-FSNNLPKGTVSASLNMVILMVMAVS  363 (413)
T ss_pred             HHHHHHHHHHHhHHHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            88888888888777664332 2223347888887776665555554

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.61  E-value=0.0016  Score=69.15  Aligned_cols=159  Identities=15%  Similarity=0.198  Sum_probs=119.6

Q ss_pred             HHHHHHHH-cCCCchHHH-HHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q 007702           28 AIVYIKKD-LNLGTTVEG-LVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDG  105 (592)
Q Consensus        28 ~~~~i~~~-~~~s~~~~g-li~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G  105 (592)
                      ..|++... .|++..+.. -+.-+..=.++...++...+.|.++.|++++++.+..++..++..+.++...+-+..++-|
T Consensus        26 l~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg  105 (412)
T PF01770_consen   26 LTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG  105 (412)
T ss_pred             chHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            44555554 677764432 2333444455667778889999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccC
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPE  185 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pE  185 (592)
                      ++.+.. .+.++|+--..|+++--++.+......-+|.+++.+++-.+......+++....+......+ .++..+++|.
T Consensus       106 ~~~a~e-vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~-a~~~~~fLP~  183 (412)
T PF01770_consen  106 LATAAE-VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL-ALLIALFLPM  183 (412)
T ss_pred             HHHHHH-HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHHcCC
Confidence            988764 56678888888888888888888888888888887666665555667788887665554444 4445577787


Q ss_pred             Chh
Q 007702          186 SPR  188 (592)
Q Consensus       186 sP~  188 (592)
                      .++
T Consensus       184 ~~~  186 (412)
T PF01770_consen  184 PKR  186 (412)
T ss_pred             CCc
Confidence            654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.51  E-value=0.0063  Score=63.83  Aligned_cols=157  Identities=13%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh
Q 007702           13 IGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS   91 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s   91 (592)
                      ++.|++--........++. +.+..+++..+.....+.+..+.++|-+++.++..|+-..|.+...+++.++.++..+++
T Consensus       243 l~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~  322 (422)
T COG0738         243 LAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI  322 (422)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444443334444444444 444488888999999999999999999999999999999999999999999988989999


Q ss_pred             ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHH
Q 007702           92 PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIP  171 (592)
Q Consensus        92 ~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~  171 (592)
                      ++...+. +-++.|+..++.+|...+...+..| ++-....++.-++...|.++-   ...+...+..+-...+....++
T Consensus       323 ~g~v~~~-~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~maivGGAiiP---~l~G~i~d~~g~~~~~~~~pll  397 (422)
T COG0738         323 GGVVALY-ALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAIVGGAIIP---PLQGVIADMFGIQLTFLIVPLL  397 (422)
T ss_pred             cChHHHH-HHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeeheecchHHH---HHHHHHHHhhhhHHHHHHHHHH
Confidence            8855444 5677899999999999999999999 444444555444544554443   3344445555655555533444


Q ss_pred             HHH
Q 007702          172 ALL  174 (592)
Q Consensus       172 ~~~  174 (592)
                      +.+
T Consensus       398 c~l  400 (422)
T COG0738         398 CYL  400 (422)
T ss_pred             HHH
Confidence            433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.50  E-value=0.014  Score=61.63  Aligned_cols=147  Identities=12%  Similarity=0.059  Sum_probs=115.4

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhh-hcCchHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHHH
Q 007702           30 VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD-WLGRRPMLILSSVLYFVSGLVMLW---SPNVYVLCIARLLDG  105 (592)
Q Consensus        30 ~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~D-r~GRK~~li~~~~l~~i~~~~~~~---s~~~~~ll~~R~l~G  105 (592)
                      ||=.+.||++..+.+.+.+....|..+|-.+.|++.. |.+.|+.-.+++.+.+++..+..+   ..+.+.+...-++.|
T Consensus       233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G  312 (403)
T PF03209_consen  233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG  312 (403)
T ss_pred             CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            5566779999999999999999999999999999877 678888888888888777655544   357888999999999


Q ss_pred             hhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh-----Hhc---CCCchhHHHHHHHHHHHHHH
Q 007702          106 FGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM-----SLL---ASPSWRLMLGVLSIPALLYF  176 (592)
Q Consensus       106 ~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----~~~---~~~~Wr~~f~i~~i~~~~~~  176 (592)
                      ++.|.+.......+.+..++++-|..++.+.....+...++....-..     ...   ...+|-.+|.+.++..++.+
T Consensus       313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~  391 (403)
T PF03209_consen  313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAAL  391 (403)
T ss_pred             HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998877776666653333221     112   23467778877766655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PTZ00207 hypothetical protein; Provisional

Probab=97.34  E-value=0.0033  Score=70.45  Aligned_cols=160  Identities=13%  Similarity=0.158  Sum_probs=109.9

Q ss_pred             HHHHHHHHc-CCCc-hH-HHHHHHHHHHHHHHHHhhHHhhhhh---------cCchHHHHHHHHHHHHHHHHHHhhccHH
Q 007702           28 AIVYIKKDL-NLGT-TV-EGLVVAMSLIGATAITTCSGPISDW---------LGRRPMLILSSVLYFVSGLVMLWSPNVY   95 (592)
Q Consensus        28 ~~~~i~~~~-~~s~-~~-~gli~s~~~lg~~ig~~~~G~l~Dr---------~GRK~~li~~~~l~~i~~~~~~~s~~~~   95 (592)
                      -+.+|.+.+ |.+. +. ..++++++.++..+|-+.+|.++..         +-|--.+.+..+ +.++.++++++-...
T Consensus       375 N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~  453 (591)
T PTZ00207        375 NARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKA  453 (591)
T ss_pred             cHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCcc
Confidence            445666777 6523 22 2337888889999999998888732         222223334444 666666666654436


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcC------C------CchhH
Q 007702           96 VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLA------S------PSWRL  163 (592)
Q Consensus        96 ~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~------~------~~Wr~  163 (592)
                      .+.+.-++.|++.|..+++.+..++|+|- ++-|+.-.+......+|.++-....++.....      .      .=.|.
T Consensus       454 ~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~  532 (591)
T PTZ00207        454 ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVM  532 (591)
T ss_pred             HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHh
Confidence            88999999999999999999999999999 88888888777777888776544444432211      0      11788


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      +|.+.+.++++.+++.....-++.++
T Consensus       533 ~~~v~~~~~~~g~~~s~~l~~R~r~~  558 (591)
T PTZ00207        533 PLAFLLGLSFLAFITSTYVHLQYRRL  558 (591)
T ss_pred             HHHHHHHHHHHHHHHHhheeeehHHH
Confidence            99998888888777665555566444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.34  E-value=0.0078  Score=67.27  Aligned_cols=139  Identities=18%  Similarity=0.096  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHcCCCc---hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHH-HHHHHHHHHHHH
Q 007702           12 TIGNFLQGWDNATIAGAIVYI-KKDLNLGT---TVEGLVVAMSLIGATAITTCSGPISDWLGRRPML-ILSSVLYFVSGL   86 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~~~~i-~~~~~~s~---~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~l-i~~~~l~~i~~~   86 (592)
                      .+..|..|..........|.. ..-|+-+.   ...++....+.++.++|+.+.|.+.-+++|-|.. +++.+++.++.-
T Consensus       316 lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~G  395 (599)
T PF06609_consen  316 LVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCG  395 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence            345555555555555555553 33455443   3567888888999999999999999888765544 567666665544


Q ss_pred             HHHhh--ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702           87 VMLWS--PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        87 ~~~~s--~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      +++..  +|....+..-++.|++.|.......+...-..|++.-|...++....-.+|..+++.+.
T Consensus       396 ama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  396 AMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            44432  45555667788999999998888888778888999999999988777777776664443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.09  E-value=0.036  Score=61.01  Aligned_cols=140  Identities=11%  Similarity=0.052  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHhhhhhcCc--hH-----HHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHh
Q 007702           43 EGLVVAMSLIGATAITTCSGPISDWLGR--RP-----MLILSSVLYFVSGLVMLWS---------PNVYVLCIARLLDGF  106 (592)
Q Consensus        43 ~gli~s~~~lg~~ig~~~~G~l~Dr~GR--K~-----~li~~~~l~~i~~~~~~~s---------~~~~~ll~~R~l~G~  106 (592)
                      .+++.++..+..++.+|+.+.+=.|.+|  |.     =+.+++++.+++.+++.++         .+.+++++.-++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            5677888888888888887777566532  21     1567777777776666431         256778888999999


Q ss_pred             hhhhhhhHHHHHHHhhcCccccchhhHHHHHH-HhhHHHHHHHHHHHhHhc----------CCCchhHHHHHHHHHHHHH
Q 007702          107 GVGLAVTLVPLYISETAPSEIRGRLNTLPQFT-GSGGMFLAYCMVFGMSLL----------ASPSWRLMLGVLSIPALLY  175 (592)
Q Consensus       107 ~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~-~~~G~~l~~~~~~~~~~~----------~~~~Wr~~f~i~~i~~~~~  175 (592)
                      |-=...|+..+.+++++|++.||+.++.+.+. ..+|..++..+.-.....          +...+...|...++..++.
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998763 467776653332222100          0124556677666666555


Q ss_pred             -HHHHHhh
Q 007702          176 -FAFAVFF  182 (592)
Q Consensus       176 -~~l~~~~  182 (592)
                       .++.+.+
T Consensus       470 ~~~~~~~~  477 (493)
T PRK15462        470 VGVVLMIW  477 (493)
T ss_pred             HHHHHHHH
Confidence             3433333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.96  E-value=0.014  Score=65.23  Aligned_cols=161  Identities=17%  Similarity=0.213  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHHHHHHHHhhcc---------
Q 007702           24 TIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFVSGLVMLWSPN---------   93 (592)
Q Consensus        24 ~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i~~~~~~~s~~---------   93 (592)
                      .....+.++..+++.+...+.-.++.+.-...+.+++.+.++|-| ||-+++.++.+++.++.++..++..         
T Consensus        56 ~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~  135 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMC  135 (571)
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Confidence            346678889999999887777788888777888889999999975 9999999999999888655543211         


Q ss_pred             ----------------HHHHHHHHHHHHhhhhhhhhHHHHHHHhhcC---ccc-cc--hhhHHHHHHHhhHHHHHHHHHH
Q 007702           94 ----------------VYVLCIARLLDGFGVGLAVTLVPLYISETAP---SEI-RG--RLNTLPQFTGSGGMFLAYCMVF  151 (592)
Q Consensus        94 ----------------~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p---~~~-Rg--~~~~~~~~~~~~G~~l~~~~~~  151 (592)
                                      ...+..+..+..+|.|+.-+....+-+|-++   ++. +.  ..+.++.+...+|.+++  ...
T Consensus       136 ~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a--~t~  213 (571)
T KOG1237|consen  136 KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLA--QTV  213 (571)
T ss_pred             cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHH--HHH
Confidence                            2356666777778999988999999999888   322 23  56677778888888887  444


Q ss_pred             HhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          152 GMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       152 ~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      .....+..+|.+.|.+..+...+.+   ..|++-+|.|
T Consensus       214 ~vyiq~~~~w~lgf~i~~~~~~lai---~iF~~g~~~y  248 (571)
T KOG1237|consen  214 LVYIQDNVGWKLGFGIPTVLNALAI---LIFLPGFPFY  248 (571)
T ss_pred             HHhhhhcccceeeccHHHHHHHHHH---HHHHcCceeE
Confidence            4445567899999987777665533   3344444444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.42  E-value=0.023  Score=62.00  Aligned_cols=119  Identities=12%  Similarity=0.158  Sum_probs=99.8

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHH-hhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhh
Q 007702           31 YIKKDLNLGTTVEGLVVAMSLIGATAITTCSG-PISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVG  109 (592)
Q Consensus        31 ~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G-~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g  109 (592)
                      +++..|+++..+.+.+.+...+...++.++.. .+...+|-|+.+.++++...+..++.+++.+.|+++...++.++. +
T Consensus       267 yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-~  345 (463)
T KOG2816|consen  267 YLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-G  345 (463)
T ss_pred             EEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-c
Confidence            45677899999999888887777777777666 777888999999999999999999999999999999988887764 4


Q ss_pred             hhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702          110 LAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       110 ~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      ...|...+.++-+..++++|+..++....-.+..++++.+.
T Consensus       346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~  386 (463)
T KOG2816|consen  346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALY  386 (463)
T ss_pred             chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHH
Confidence            55677888999999999999999998888887777775443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.31  Score=52.88  Aligned_cols=104  Identities=19%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhhh---hhcCchHHHHHHHHHHHHHHHHHHhh------------------ccHHHHHH
Q 007702           41 TVEGLVVAMSLIGATAITTCSGPIS---DWLGRRPMLILSSVLYFVSGLVMLWS------------------PNVYVLCI   99 (592)
Q Consensus        41 ~~~gli~s~~~lg~~ig~~~~G~l~---Dr~GRK~~li~~~~l~~i~~~~~~~s------------------~~~~~ll~   99 (592)
                      ...++..-...+|..++..+.+.++   +++||++.+.++.++..++.++...+                  +++...++
T Consensus       279 ~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~i  358 (461)
T KOG3098|consen  279 YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALI  358 (461)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHH
Confidence            3444445555566666667777776   46899999999999988887776542                  24667777


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHH
Q 007702          100 ARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFL  145 (592)
Q Consensus       100 ~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l  145 (592)
                      .-++.|++-+...+..+.++.... ++.|..+.++.-+-..++..+
T Consensus       359 i~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v  403 (461)
T KOG3098|consen  359 IGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCV  403 (461)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999 666777777655555555443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.073  Score=57.64  Aligned_cols=105  Identities=21%  Similarity=0.232  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCcc
Q 007702           47 VAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSE  126 (592)
Q Consensus        47 ~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~  126 (592)
                      .++......+.+++++.+.|.+|.|..++++...+....+...+-+ -+.++++-.+.|+|.+..++.--.|++|.++++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N-~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPN-SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcc-hHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            6677777888999999999999999999999999988877666555 556677889999999999999999999999999


Q ss_pred             ccchhhHHHHHHHhhHHHHHHHHHHH
Q 007702          127 IRGRLNTLPQFTGSGGMFLAYCMVFG  152 (592)
Q Consensus       127 ~Rg~~~~~~~~~~~~G~~l~~~~~~~  152 (592)
                      .+.+..++.-.....+.++|.+..+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            99999988777777777776444433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.23  E-value=0.13  Score=55.56  Aligned_cols=128  Identities=17%  Similarity=0.158  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHH---HHHHhhc-------cHH
Q 007702           26 AGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSG---LVMLWSP-------NVY   95 (592)
Q Consensus        26 ~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~---~~~~~s~-------~~~   95 (592)
                      .+.+..+.+.-|+++...|..-+...+..+.|+++..++.+|+|..+.=+++...-.+.-   +...+.+       +..
T Consensus       278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~  357 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY  357 (432)
T ss_pred             cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence            333333444449999999999999999999999999999999999998888876543322   2222322       334


Q ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh
Q 007702           96 VLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM  153 (592)
Q Consensus        96 ~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~  153 (592)
                      .++.+-.+.=+|.=.+..+..-++-|..|+++||..++.-....++--++.+.+....
T Consensus       358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~  415 (432)
T PF06963_consen  358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF  415 (432)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4444555555666666777888899999999999999998877777777765555443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.17  E-value=0.012  Score=62.61  Aligned_cols=123  Identities=15%  Similarity=0.189  Sum_probs=90.7

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh----cCchHHHHHHHH-HHHHHHHHHHhhccH--------
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDW----LGRRPMLILSSV-LYFVSGLVMLWSPNV--------   94 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr----~GRK~~li~~~~-l~~i~~~~~~~s~~~--------   94 (592)
                      .++.+.+..|++....+.+--...+...+.+++.|..+||    |||||.+++... +..++.++..++.++        
T Consensus        54 y~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~  133 (498)
T KOG0637|consen   54 YLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNE  133 (498)
T ss_pred             cccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCc
Confidence            4455677889888777777777777888889999999995    898888776544 455666777775443        


Q ss_pred             ---------HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccch-hhHHHHHHHhhHHHHHHHHH
Q 007702           95 ---------YVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGR-LNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        95 ---------~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~-~~~~~~~~~~~G~~l~~~~~  150 (592)
                               ..++++-.+.=++.-.....+-++++|.+..+.+-+ +++++.++..+|..++|...
T Consensus       134 ~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g  199 (498)
T KOG0637|consen  134 RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALG  199 (498)
T ss_pred             ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeecc
Confidence                     333344444445555666778899999998877766 99999999999998886554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=96.15  E-value=0.01  Score=58.73  Aligned_cols=90  Identities=21%  Similarity=0.306  Sum_probs=65.1

Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhh
Q 007702           33 KKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAV  112 (592)
Q Consensus        33 ~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~  112 (592)
                      -+.++....+++.+...-+-..++...+.|.++|+.|||+.-+.-++.++++++ .-.++.|-.++++|++.|+..+..+
T Consensus        64 YstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLLF  142 (454)
T KOG4332|consen   64 YSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLLF  142 (454)
T ss_pred             ehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHHH
Confidence            344555555555544444444455566778999999999988777777777654 4567899999999999999998887


Q ss_pred             hHHHH-HHHhhc
Q 007702          113 TLVPL-YISETA  123 (592)
Q Consensus       113 ~~~~~-~i~E~~  123 (592)
                      ..--. +++|.-
T Consensus       143 SaFEsWliaEHn  154 (454)
T KOG4332|consen  143 SAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHhh
Confidence            76654 567765

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.13  E-value=0.17  Score=54.73  Aligned_cols=141  Identities=14%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhhcCch---H----HHHHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHH
Q 007702           42 VEGLVVAMSLIGATAITTCSGPISDWLGRR---P----MLILSSVLYFVSGLVMLWS----------PNVYVLCIARLLD  104 (592)
Q Consensus        42 ~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK---~----~li~~~~l~~i~~~~~~~s----------~~~~~ll~~R~l~  104 (592)
                      ..++..+...+..++.+++...+--+.++|   +    -+-++.++++.+.+++...          -+.++++..-+++
T Consensus       325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~  404 (498)
T COG3104         325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ  404 (498)
T ss_pred             CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence            356777777777777777777776664444   2    2335555555555555443          2578889999999


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhH----hcCCCchhHHHHHHHHHHHHHHHHHH
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS----LLASPSWRLMLGVLSIPALLYFAFAV  180 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~----~~~~~~Wr~~f~i~~i~~~~~~~l~~  180 (592)
                      +++-=+..|+...+++..+|+...+..++++-+....|..++..+.-...    ..+...-...|+..+...++..+...
T Consensus       405 s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~  484 (498)
T COG3104         405 SFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLL  484 (498)
T ss_pred             HHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988887743332111    12222344555555555555444333


Q ss_pred             hh
Q 007702          181 FF  182 (592)
Q Consensus       181 ~~  182 (592)
                      ..
T Consensus       485 ~~  486 (498)
T COG3104         485 LL  486 (498)
T ss_pred             Hh
Confidence            33

>PRK03612 spermidine synthase; Provisional

Probab=96.05  E-value=0.6  Score=51.95  Aligned_cols=160  Identities=14%  Similarity=0.032  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH---HHHHH--
Q 007702           15 NFLQGWDNATIAGAI-VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV---SGLVM--   88 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~-~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i---~~~~~--   88 (592)
                      .|+.|+....+-... -.+..-+|-+....+.+++++.+|..+|+.+++.+.++.-|+...+ -..+..+   +..+.  
T Consensus        23 ~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~-e~~i~l~~~~~~~ll~~  101 (521)
T PRK03612         23 VFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAV-ELLLALLGGLSALILYA  101 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            333444433333322 2345567878888999999999999999999998874433332221 1111111   11111  


Q ss_pred             --Hhhc-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-hhHH
Q 007702           89 --LWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLM  164 (592)
Q Consensus        89 --~~s~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-Wr~~  164 (592)
                        .+.. ....++..-++.++..|+..|...-+..+... +.-|...+-......+|.++|.+.... .+....| .+..
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~-vLlp~lG~~~t~  179 (521)
T PRK03612        102 AFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF-LLLPRLGLIRTA  179 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH-HHHHhcchHHHH
Confidence              1111 11223344566778888887776665544322 112445566666677777777544322 2333334 3444


Q ss_pred             HHHHHHHHHHHHHH
Q 007702          165 LGVLSIPALLYFAF  178 (592)
Q Consensus       165 f~i~~i~~~~~~~l  178 (592)
                      + +.+++.++..++
T Consensus       180 ~-~~a~l~~~~a~~  192 (521)
T PRK03612        180 A-LTGSLNLLAALV  192 (521)
T ss_pred             H-HHHHHHHHHHHH
Confidence            4 444444443433

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.93  E-value=0.036  Score=58.83  Aligned_cols=104  Identities=16%  Similarity=0.237  Sum_probs=78.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhh--c-------cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc---cchhhHHHHHHH
Q 007702           72 PMLILSSVLYFVSGLVMLWS--P-------NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI---RGRLNTLPQFTG  139 (592)
Q Consensus        72 ~~li~~~~l~~i~~~~~~~s--~-------~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~---Rg~~~~~~~~~~  139 (592)
                      |+++++.+++.+|.++..++  +       +.+.++++-++.++|.|+.=|....+.+|.++++.   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57888999999998885443  2       23678888999999999999999999999999763   455666778889


Q ss_pred             hhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHH
Q 007702          140 SGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFA  177 (592)
Q Consensus       140 ~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~  177 (592)
                      ++|.+++.  .......++.+|.+.|++.++..++..+
T Consensus        82 n~G~~~~~--~~~~~i~~~~~~~~~f~i~~~~~~~~~~  117 (372)
T PF00854_consen   82 NIGSLFSP--TLVPYIQQNYGWFLGFGIPAIGMLLALI  117 (372)
T ss_dssp             HHHHHHHH--HCCCHHHHCS-HHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhc--ccchhhccccchhhhhhHHHHHHHHHHH
Confidence            99998883  3334445678999999988877766443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.71  E-value=0.14  Score=54.48  Aligned_cols=138  Identities=17%  Similarity=0.133  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH--HHHH--
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL--YFVS--   84 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l--~~i~--   84 (592)
                      +-+.+.++...+.+..+.+.+. +..++.-.....-+...+|.+|..++---...+  |+  |+..+.+.+-  ..+.  
T Consensus       250 iPL~lVY~aEY~InqGv~~tl~-fp~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~  324 (402)
T PF02487_consen  250 IPLFLVYFAEYFINQGVAPTLL-FPNSFFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLL  324 (402)
T ss_pred             HHHHHHHHHHHHHHhchHHHhc-CCccCCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHH
Confidence            3344555555554444433321 112233334677888888888888875433222  33  3333333222  2222  


Q ss_pred             -HHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHH
Q 007702           85 -GLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVF  151 (592)
Q Consensus        85 -~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~  151 (592)
                       ....-+.++.|.+++.-+..|+..|..+.-+...+.|-.|+++|...++...++-++|.+++.++..
T Consensus       325 l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l  392 (402)
T PF02487_consen  325 LQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL  392 (402)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             2222345889999999999999999999999999999999999999999999999999998855543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=95.55  E-value=0.22  Score=52.09  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC--chHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhh
Q 007702           33 KKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG--RRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGL  110 (592)
Q Consensus        33 ~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G--RK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~  110 (592)
                      ...|+.++.+.|-+.+...++.++.+....+..|+..  -+-.+..++.++.-..++...++....+.++-.+-.++.+.
T Consensus       289 ~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~  368 (451)
T KOG2615|consen  289 HGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTAS  368 (451)
T ss_pred             cCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHH
Confidence            3668899999999999888888888888888889887  77777777777777777778888888888899999999888


Q ss_pred             hhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702          111 AVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       111 ~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      ..+....++....|.++||.++|+.....+++-.+++...
T Consensus       369 ~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~  408 (451)
T KOG2615|consen  369 VVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVS  408 (451)
T ss_pred             hhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999999999999999999996554

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=95.00  E-value=3.1  Score=45.56  Aligned_cols=125  Identities=7%  Similarity=0.081  Sum_probs=86.1

Q ss_pred             HHHHHHHcCCC-----chHHHHHHHHHHHHHHHH-HhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh--cc-------
Q 007702           29 IVYIKKDLNLG-----TTVEGLVVAMSLIGATAI-TTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS--PN-------   93 (592)
Q Consensus        29 ~~~i~~~~~~s-----~~~~gli~s~~~lg~~ig-~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s--~~-------   93 (592)
                      +-.+++.+.++     .....++-+...+...+. .++.+.+++|++|++.+-+....+++..+++++.  |+       
T Consensus        26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~  105 (472)
T TIGR00769        26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPT  105 (472)
T ss_pred             HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCc
Confidence            44567776663     246677777666666555 8889999999999999988777776665555543  11       


Q ss_pred             ----------------------HHHHHHHHHHHHhhhhhhhh-HHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702           94 ----------------------VYVLCIARLLDGFGVGLAVT-LVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        94 ----------------------~~~ll~~R~l~G~~~g~~~~-~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                                            .|...+.-+...+-.....+ .-+.++.|++..++-.+..++..++.++|.++++...
T Consensus       106 ~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~  185 (472)
T TIGR00769       106 ALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTI  185 (472)
T ss_pred             HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                  12222223333444444444 6678999999999999999999999999999986555


Q ss_pred             HHh
Q 007702          151 FGM  153 (592)
Q Consensus       151 ~~~  153 (592)
                      ...
T Consensus       186 ~~~  188 (472)
T TIGR00769       186 KYF  188 (472)
T ss_pred             HHH
Confidence            443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.86  E-value=0.89  Score=48.52  Aligned_cols=135  Identities=13%  Similarity=0.142  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCc
Q 007702           46 VVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPS  125 (592)
Q Consensus        46 i~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~  125 (592)
                      +.-+-.+-..+..+++.++.+|+.-+.=+.+..++..++.++.+++++++.=+++-++.+++.|..-.....+.+ .+|+
T Consensus        64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y~~  142 (402)
T PF02487_consen   64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FYGK  142 (402)
T ss_pred             HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hcCc
Confidence            444444555666677888888887666667777888889999999999999899999999998887666655543 5554


Q ss_pred             cccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          126 EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       126 ~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      .    ..+-+..+...+.++++....++.. ...+-|..+.+...++++.++..++.+|.+
T Consensus       143 ~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  143 S----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             c----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            2    2333344444455555444433333 344567777777776665554444555543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.04  E-value=2.6  Score=44.42  Aligned_cols=141  Identities=21%  Similarity=0.194  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhh-----hcCchHHHHHH-HHHH
Q 007702            8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD-----WLGRRPMLILS-SVLY   81 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~D-----r~GRK~~li~~-~~l~   81 (592)
                      +..+.+-+.++|...+... .+|.+.+.-|.|.+..+...-.+.=  .---+++.++.|     |+||||.-++- ..+.
T Consensus        33 illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~ll  109 (510)
T KOG3574|consen   33 ILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLL  109 (510)
T ss_pred             HHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHHHH
Confidence            3455566788999998888 8899888778777666554433211  123467888888     99999875432 2222


Q ss_pred             HHHHHHHHh-----------hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702           82 FVSGLVMLW-----------SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus        82 ~i~~~~~~~-----------s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      ...+...+.           .|+...+...-++.-|..+.-..++=.+.-.+..+++-|.+.+...++...|.++++.+.
T Consensus       110 G~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  110 GLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            222222222           234444444445555555555555556666777888888888888888888888875544


Q ss_pred             H
Q 007702          151 F  151 (592)
Q Consensus       151 ~  151 (592)
                      +
T Consensus       190 L  190 (510)
T KOG3574|consen  190 L  190 (510)
T ss_pred             e
Confidence            3

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.95  E-value=0.23  Score=53.11  Aligned_cols=100  Identities=16%  Similarity=0.064  Sum_probs=69.0

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcC-chHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHhhhhh
Q 007702           36 LNLGTTVEGLVVAMSLIGATAITTCSGPISDWLG-RRPMLILSSVLYFVSGLVMLWS----PNVYVLCIARLLDGFGVGL  110 (592)
Q Consensus        36 ~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~G-RK~~li~~~~l~~i~~~~~~~s----~~~~~ll~~R~l~G~~~g~  110 (592)
                      -|.+....|.+.....++.++++.++|.+.||.. -|.++++......++++.....    ...+.++....+.|++..+
T Consensus       296 sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~  375 (480)
T KOG2563|consen  296 SGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTG  375 (480)
T ss_pred             ccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcC
Confidence            3445567899999999999999999999999974 5556666666655554222221    2335566667778888888


Q ss_pred             hhhHHHHHHHhhcCccccchhhHHH
Q 007702          111 AVTLVPLYISETAPSEIRGRLNTLP  135 (592)
Q Consensus       111 ~~~~~~~~i~E~~p~~~Rg~~~~~~  135 (592)
                      .+|+..-+..|..-|..-+...|+.
T Consensus       376 ~~Pig~ElgvE~TyPv~E~tSsGll  400 (480)
T KOG2563|consen  376 YLPIGFELGVETTYPVAEGTSSGLL  400 (480)
T ss_pred             CCCcceeeeeeeccccCCcccceeE
Confidence            8888888888876555444444443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=93.73  E-value=0.036  Score=60.18  Aligned_cols=71  Identities=20%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702           13 IGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus        13 l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      +.++..+...+.+-|.++.+-+++|+++.+.|.++.+-.+..+++.+++|+++||+-+||.++++.++..+
T Consensus        18 ~f~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v   88 (618)
T KOG3762|consen   18 LFYLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSV   88 (618)
T ss_pred             eeeeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            33444455566677888889999999999999999999999999999999999999877777766655443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.67  E-value=0.49  Score=51.43  Aligned_cols=148  Identities=13%  Similarity=0.096  Sum_probs=95.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh----------ccHHHHHHHHHHHHhh
Q 007702           38 LGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS----------PNVYVLCIARLLDGFG  107 (592)
Q Consensus        38 ~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s----------~~~~~ll~~R~l~G~~  107 (592)
                      +++...+.+..+..++.++|..+.....-+..-|+++.++.++.++..+....-          ++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            667777777788888888888888888778888999988888877766543321          1112223334555666


Q ss_pred             hhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhH---hc---CCCchhHHHHHHHHHHHHHHHHHHh
Q 007702          108 VGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMS---LL---ASPSWRLMLGVLSIPALLYFAFAVF  181 (592)
Q Consensus       108 ~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~---~~---~~~~Wr~~f~i~~i~~~~~~~l~~~  181 (592)
                      .+..+-....+++|++|+..-|...++.....++|..++..+.....   ..   +..+-.+..++..+..++ .+...+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll-~l~ll~  410 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLL-PLPLLF  410 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH-HHHHHH
Confidence            66666677788999999999999888877777777766644443321   11   111223334444454543 334455


Q ss_pred             hccCC
Q 007702          182 FLPES  186 (592)
Q Consensus       182 ~~pEs  186 (592)
                      ++|+.
T Consensus       411 lLp~~  415 (433)
T PF03092_consen  411 LLPPQ  415 (433)
T ss_pred             HcCCC
Confidence            67765

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00805 oat sodium-independent organic anion transporter

Probab=90.84  E-value=1.3  Score=50.59  Aligned_cols=58  Identities=10%  Similarity=0.084  Sum_probs=44.8

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHH-HHHHHHhhHHhhhhhcC--chHHHHHHHHHHHHHH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLI-GATAITTCSGPISDWLG--RRPMLILSSVLYFVSG   85 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~l-g~~ig~~~~G~l~Dr~G--RK~~li~~~~l~~i~~   85 (592)
                      ...+++..+|++..+.+++.+...+ +.++|.++.|+++||++  .|+++.++.++.+++.
T Consensus       353 lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       353 LPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             HHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence            3445777899999999999988776 67899999999999998  4566666665555553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF12832 MFS_1_like: MFS_1 like family

Probab=90.34  E-value=0.84  Score=36.68  Aligned_cols=58  Identities=22%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             HHHHHhhcccchhhchHHHHHHcCchhhhhccCCCCchhHHHHHHHHHHHHhhhHhHHHHHhhhcCCC
Q 007702          525 QILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRR  592 (592)
Q Consensus       525 ~~~qQ~sGin~i~~Y~~~i~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~~lvd~~GRR  592 (592)
                      ..+-.+++...+..|.|..+++.|+          +....-++..+..+..+++..+...++||+|||
T Consensus         8 ~yf~~f~~~g~~~Pfl~~~~~~~Gl----------~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~   65 (77)
T PF12832_consen    8 FYFFYFAALGCLYPFLPLYLKQLGL----------SPSQIGILSAIRPLIRFLAPPLWGFLADKFGKR   65 (77)
T ss_pred             HHHHHHHHHHHHHhhhhHhhhhcCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence            3445677878889999999999886          344455566667777888888999999999986

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=85.71  E-value=1.2  Score=46.10  Aligned_cols=135  Identities=15%  Similarity=0.161  Sum_probs=97.6

Q ss_pred             HHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhH
Q 007702           54 ATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNT  133 (592)
Q Consensus        54 ~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~  133 (592)
                      +.+.-.+.=.+.|..--||++++-.+..++..++..+.++++.+=+.-++-|...+.. .+.++|+-+..+++++-+..+
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~Yqrvt~  133 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEMYKRVTG  133 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-HhhhheeeeecCHHHHHHHHH
Confidence            3444455557899999999999999999999999999999998888888888766544 456788888899999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          134 LPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       134 ~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                      ..-...-.|.+.+.+..-.+...+..++...=.+... +..+..+..+++|..||-+
T Consensus       134 y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~-~~~ia~~~A~fLP~v~rSl  189 (433)
T KOG3810|consen  134 YCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLA-EVTIAVLLALFLPRVKRSL  189 (433)
T ss_pred             HhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHH-HHHHHHHHHhhCCCCchhh
Confidence            9888888888888666555544444455544433333 2233444567777766443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.41  E-value=5.9  Score=43.07  Aligned_cols=108  Identities=18%  Similarity=0.090  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhhcCch--HHHHHHH--HHHHHHHHHHHhh---------ccHHHHHHHHHHHHhhh
Q 007702           42 VEGLVVAMSLIGATAITTCSGPISDWLGRR--PMLILSS--VLYFVSGLVMLWS---------PNVYVLCIARLLDGFGV  108 (592)
Q Consensus        42 ~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK--~~li~~~--~l~~i~~~~~~~s---------~~~~~ll~~R~l~G~~~  108 (592)
                      ..-+...++++|-.+|-.+..+.. .-.+|  ..++.+.  ++++...+++..-         ++-+..++.-++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            445667788888888887654431 11223  3332221  1222222333221         35566677789999999


Q ss_pred             hhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHH
Q 007702          109 GLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMV  150 (592)
Q Consensus       109 g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~  150 (592)
                      |...+.+..+..+..++++|..+..+..++..+|..+|....
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988888888888775443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=83.56  E-value=71  Score=34.67  Aligned_cols=73  Identities=15%  Similarity=0.117  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH
Q 007702            9 IAATIGNFLQGWDNATIAGAIVYIKKDLNLGT-TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY   81 (592)
Q Consensus         9 ~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~-~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~   81 (592)
                      ..++.+.++..+..-+...+.+.+..+...++ -..+...-+-.+..++..+..|...||..|.+++..+.+..
T Consensus         5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Q   78 (432)
T PF06963_consen    5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQ   78 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHH
Confidence            45667778888888888887777666654322 22333333344556677778889999999999988776654

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=82.72  E-value=39  Score=36.19  Aligned_cols=106  Identities=11%  Similarity=-0.059  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHH---HHHHHHHHhh-----
Q 007702           20 WDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLY---FVSGLVMLWS-----   91 (592)
Q Consensus        20 ~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~---~i~~~~~~~s-----   91 (592)
                      +.+..+..+.+++.+.+.-... .......+.+.+.+..++...+--+..-|....++..++   ++..+.+.++     
T Consensus        32 lpWN~fiTa~~y~~~~~~~~~~-~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~~~il~i~~l~~~~v~~~  110 (406)
T KOG1479|consen   32 LPWNMFITASDYYYYRFPGYHN-SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSLIAILFIVTLDLALVKTD  110 (406)
T ss_pred             cchHhhhccHHHHHhhcCCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            3455555667788877765444 444445555555555544444444333222222222222   1111222221     


Q ss_pred             ----ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc
Q 007702           92 ----PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI  127 (592)
Q Consensus        92 ----~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~  127 (592)
                          ..+...++.-.+.+++.|......+...++ +|++.
T Consensus       111 ~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen  111 TWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             CccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence                234555566667777777666555555544 45554

>TIGR00806 rfc RFC reduced folate carrier

Probab=82.45  E-value=23  Score=38.98  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhhhhcCch--HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007702           42 VEGLVVAMSLIGATAITTCSGPISDWLGRR--PMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYI  119 (592)
Q Consensus        42 ~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK--~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i  119 (592)
                      .-|.+-++..+..++.++..|++-.++.|-  ..+-+.+++.+..-+++.+++|.|...++-++-+.......+++..-+
T Consensus       299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~i  378 (511)
T TIGR00806       299 YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQI  378 (511)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888888999999997766442  333344444555567777889999999999999988888888888888


Q ss_pred             HhhcCccccchhhHHHHHH
Q 007702          120 SETAPSEIRGRLNTLPQFT  138 (592)
Q Consensus       120 ~E~~p~~~Rg~~~~~~~~~  138 (592)
                      +.....+.-|...|+..+.
T Consensus       379 A~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       379 ASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HHHhcccceEEEEecHHHH
Confidence            8887777778877775543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=81.79  E-value=22  Score=30.33  Aligned_cols=46  Identities=20%  Similarity=0.309  Sum_probs=33.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH
Q 007702           41 TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL   86 (592)
Q Consensus        41 ~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~   86 (592)
                      ...+.......++..++..+.+.+.|..|.+..+.+..++..++.+
T Consensus        87 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (141)
T TIGR00880        87 VALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFI  132 (141)
T ss_pred             HHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            4556677778888888889999999888887777666555544433

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=80.46  E-value=5.9  Score=43.28  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCchHHHHHHHH---HHHHHHHHHhhHHhhhhhcCchHHHHHH------H
Q 007702           10 AATIGNFLQGWDNATIAGAIVYIKKD--LNLGTTVEGLVVAM---SLIGATAITTCSGPISDWLGRRPMLILS------S   78 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~~~~~~i~~~--~~~s~~~~gli~s~---~~lg~~ig~~~~G~l~Dr~GRK~~li~~------~   78 (592)
                      .+.+-++++|...+...+..|.+.++  -+.+.++.+.+.-+   |.+=..-..++=.....|+||||.-++=      .
T Consensus         4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~   83 (544)
T PF13000_consen    4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGI   83 (544)
T ss_pred             HHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHH
Confidence            45567889999988876788888877  66776665543321   2222222233333345589999986542      2


Q ss_pred             HHHHHHHHH----------HHhh-------c--cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHH
Q 007702           79 VLYFVSGLV----------MLWS-------P--NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTG  139 (592)
Q Consensus        79 ~l~~i~~~~----------~~~s-------~--~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~  139 (592)
                      .+..++.-+          -.+.       +  +...+.+.-++.=+..+--..++=.+.-.+..++.++.+.+...++.
T Consensus        84 ~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~  163 (544)
T PF13000_consen   84 LMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQ  163 (544)
T ss_pred             HHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhHh
Confidence            222222222          0000       0  01111122211111111111222234445667888888888888888


Q ss_pred             hhHHHHHHHHHHHh
Q 007702          140 SGGMFLAYCMVFGM  153 (592)
Q Consensus       140 ~~G~~l~~~~~~~~  153 (592)
                      +.|.++++.....+
T Consensus       164 ~~Gyfls~tvFlal  177 (544)
T PF13000_consen  164 TAGYFLSFTVFLAL  177 (544)
T ss_pred             hhhHHHHHHHHHhh
Confidence            88888886655443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	592
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-23

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 35/236 (14%)
Query: 7   VAIAATIGNFLQGWDNATIAGAI-----VYIKKDLNL----GTTVEGLVVAMSLIGATAI 57
           + + AT+G  L G+D A I+G +     V++    NL      ++ G  VA +LIG    
Sbjct: 13  ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQ-NLSESAANSLLGFCVASALIGCIIG 71
Query: 58  TTCSGPISDWLGRRPMLILSSVLYFVSGLVMLW--------SPN----VYV------LCI 99
               G  S+  GRR  L +++VL+F+SG+   W        +P+    VY+        I
Sbjct: 72  GALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131
Query: 100 ARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM------ 153
            R++ G GVGLA  L P+YI+E AP+ IRG+L +  QF    G  L YC+ + +      
Sbjct: 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191
Query: 154 SLLASPSWRLMLGVLSIPXXXXXXXXXXXXPESPRWLVSKGKMLEAKQVLQRLRGR 209
           S L +  WR M     IP            PESPRWL+S+GK  +A+ +L+++ G 
Sbjct: 192 SWLNTDGWRYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	592
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	2e-11
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-07

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 6/157 (3%)

Query: 32  IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS 91
           + +DLN+       V+   L+         GPISD +GRRP++++   ++ ++ LV + +
Sbjct: 26  MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT 85

Query: 92  PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCM-- 149
            ++ VL  A  + G G G+   +      +          N+L     + G+ ++  +  
Sbjct: 86  SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSL----LNMGILVSPLLAP 141

Query: 150 VFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES 186
           + G  L    +WR     L +           ++PE+
Sbjct: 142 LIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 8/165 (4%)

Query: 30  VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWL---GRRPMLILSSVLYFVSGL 86
            Y+K+  +           +        T   G +SD +    R    +    L  ++ +
Sbjct: 277 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336

Query: 87  VMLWSP--NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGS-GGM 143
           V   +P  N  V  I  ++ GF +   V L+ L+  E AP +  G         G  GG 
Sbjct: 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396

Query: 144 FLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPR 188
             A   + G   +    W     V+   ++L     +  +    R
Sbjct: 397 VAAS-AIVGY-TVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 439

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	592
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.96
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.8
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.72
2xut_A	524	Proton/peptide symporter family protein; transport	99.6
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.31
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.27
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.17
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.08
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.07
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.0
2xut_A	524	Proton/peptide symporter family protein; transport	98.4
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.25

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.96  E-value=4e-30  Score=279.68  Aligned_cols=300  Identities=27%  Similarity=0.444  Sum_probs=226.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHH
Q 007702            5 ALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLG--------TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLIL   76 (592)
Q Consensus         5 ~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s--------~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~   76 (592)
                      +.++++++++.+++|||.++++++++.++++|+.+        +...+++.+++.+|.++|++++|+++||+|||+++++
T Consensus        11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~   90 (491)
T 4gc0_A           11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            45566778999999999999999999999988542        2567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH------------------hhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHH
Q 007702           77 SSVLYFVSGLVML------------------WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFT  138 (592)
Q Consensus        77 ~~~l~~i~~~~~~------------------~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~  138 (592)
                      +.+++++++++++                  +++++++++++|+++|++.|+..+.+++|++|++|+++|++..++.+.+
T Consensus        91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~  170 (491)
T 4gc0_A           91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA  170 (491)
T ss_dssp             HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence            9999999999998                  4789999999999999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHHHHHhHhc------CCCchhHHHHHHHHHHHHHHHHHHhhccCChhHHHhcCcHHHHHHHHHHHhCCCCc
Q 007702          139 GSGGMFLAYCMVFGMSLL------ASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDV  212 (592)
Q Consensus       139 ~~~G~~l~~~~~~~~~~~------~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~ea~~~l~~l~~~~~~  212 (592)
                      ..+|.+++++..+.....      ....||+++.+..++.++ .++..+++||||+|+..+++.+++++.+++.+.+++.
T Consensus       171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~  249 (491)
T 4gc0_A          171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA  249 (491)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence            999999987776655432      235799999888877776 4456788999999999999999999999988766544


Q ss_pred             hHHHHHHHHHHhcccchhhhHhhhCCCCCCCCCCCCCccccchhhcccc-cceeeeeccccCccccc-----hhhccccc
Q 007702          213 SGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPE-EGLSWVAKPVTGQSSLA-----LVSRQGSL  286 (592)
Q Consensus       213 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~-~~~~~~~~~lsG~~~v~-----~~~~~~~~  286 (592)
                      ..+..+..+.....         .+.          .......+.++.. .....++++++|.+.+.     +....+..
T Consensus       250 ~~~~~~~~~~~~~~---------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4gc0_A          250 TQAVQEIKHSLDHG---------RKT----------GGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS  310 (491)
T ss_dssp             HHHHHHHHHHHHHH---------HHH----------TTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHhh---------hhh----------hhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence            43333222211000         000          0000111122222 45666778888877654     11111110


Q ss_pred             ccc--cCcchhhHHHHHhhccc--cCCCCCCccccccCCCCc
Q 007702          287 ANQ--SVPLMDPLVTLFGSVHE--KLPESGSMRSTLFPTFGS  324 (592)
Q Consensus       287 ~~~--~~~~~~~~v~l~gs~~~--~id~~GRr~~~l~~~~gs  324 (592)
                      ...  .......++.+++++..  ++||+|||+.++.+..+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~  352 (491)
T 4gc0_A          311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGM  352 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHH
Confidence            000  11345566777777777  999999999988776654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.85  E-value=1.4e-20  Score=200.85  Aligned_cols=187  Identities=15%  Similarity=0.084  Sum_probs=161.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHH
Q 007702            3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF   82 (592)
Q Consensus         3 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~   82 (592)
                      +.+...+.+++..+..+++....++.+|.+.+++|++..+.+++.+++.++..++.++.|+++||+|||++++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~  102 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA  102 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence            44667777888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH---HhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           83 VSGLVM---LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        83 i~~~~~---~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      ++.+++   .++++++.++++|++.|++.|...+....+++|++|+++|++.+++.+.+..+|..+++.+..........
T Consensus       103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  182 (438)
T 3o7q_A          103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP  182 (438)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999   88899999999999999999999999999999999999999999999999999999996554333212222


Q ss_pred             c------------------------hhHHHHHHHHHHHHHHHHHHh-hccCChhH
Q 007702          160 S------------------------WRLMLGVLSIPALLYFAFAVF-FLPESPRW  189 (592)
Q Consensus       160 ~------------------------Wr~~f~i~~i~~~~~~~l~~~-~~pEsP~~  189 (592)
                      .                        ||++|++.+++.++..++.++ ..||+++.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  237 (438)
T 3o7q_A          183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD  237 (438)
T ss_dssp             CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred             cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence            2                        999998777766654444333 36777653

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.80  E-value=5.9e-20  Score=196.62  Aligned_cols=184  Identities=16%  Similarity=0.102  Sum_probs=166.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      .+..+..++++.+..+++...+.+.+|.+.+++ .+..+.+++.+++.++..++.+++|+++||+|||++++++.++.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHH
Confidence            356677888889999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh----hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           84 SGLVMLW----SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        84 ~~~~~~~----s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      +.+++++    +++++.++++|++.|++.+...+...++++|++|+++|++.+++.+.+..+|..+++.+.  ..+.+..
T Consensus       105 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~--~~l~~~~  182 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF--LLGMAWF  182 (451)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH--HHHHHHT
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence            9999999    999999999999999999999999999999999999999999999999999999885544  2223445


Q ss_pred             c-hhHHHHHHHHHHHHHHHHHHhhccCChhHH
Q 007702          160 S-WRLMLGVLSIPALLYFAFAVFFLPESPRWL  190 (592)
Q Consensus       160 ~-Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~l  190 (592)
                      + ||++|++.+++.++..++.++++||+|+..
T Consensus       183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  214 (451)
T 1pw4_A          183 NDWHAALYMPAFCAILVALFAFAMMRDTPQSC  214 (451)
T ss_dssp             CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc
Confidence            6 999999999888877777788899998763

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.77  E-value=2.3e-18  Score=180.28  Aligned_cols=180  Identities=19%  Similarity=0.213  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHH
Q 007702            8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV   87 (592)
Q Consensus         8 ~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~   87 (592)
                      ++.++++.+..+++...+.+.+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||++++++.++..++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   81 (375)
T 2gfp_A            2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV   81 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            34567788888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702           88 MLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV  167 (592)
Q Consensus        88 ~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i  167 (592)
                      ..++++++.+++.|++.|++.+...+....++.|.+|+++|++.+++.+....+|..+++  .......+..+||++|++
T Consensus        82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~~~~~~~~~~~  159 (375)
T 2gfp_A           82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAP--LIGGLLDTMWNWRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHH--HHHHHSSCHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999984  444555566799999998


Q ss_pred             HHHHHHHHHHHHHhhccCChhH
Q 007702          168 LSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       168 ~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      .+++.++..++..+++||+|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHCcccCCC
Confidence            8888877666567788998765

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.72  E-value=1e-16  Score=173.98  Aligned_cols=171  Identities=15%  Similarity=0.142  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHH-----cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhh-cCchHHHHHHHHHHH
Q 007702           10 AATIGNFLQGWDNATIA-GAIVYIKKD-----LNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYF   82 (592)
Q Consensus        10 ~~~l~~~~~g~~~~~~~-~~~~~i~~~-----~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr-~GRK~~li~~~~l~~   82 (592)
                      .+.+..+...+....+. ...+++.++     +|++..+.+++.+++.++..++++++|+++|| +|||++++++.++.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~   96 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM   96 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            33344444444444443 344566666     99999999999999999999999999999999 899999999999999


Q ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccc--cchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc
Q 007702           83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS  160 (592)
Q Consensus        83 i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~  160 (592)
                      ++.++++++++++.++++|++.|++.|...+...++++|++|+++  |+...++.+....+|..+++.+.  ..+.+..+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~g  174 (491)
T 4aps_A           97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV--GAAQEAAG  174 (491)
T ss_dssp             HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHSC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH--HHHHhhhh
Confidence            999999999999999999999999999999999999999999998  67788888899999999885443  44445578


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhh
Q 007702          161 WRLMLGVLSIPALLYFAFAVFF  182 (592)
Q Consensus       161 Wr~~f~i~~i~~~~~~~l~~~~  182 (592)
                      ||++|++.++..++..++.++.
T Consensus       175 ~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          175 YHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998877666555444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.60  E-value=1.5e-14  Score=158.25  Aligned_cols=166  Identities=17%  Similarity=0.149  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHcC------CCchHHHHHHHHHHHHHHHHHhhHHhhhhhc-CchHHHHHHHHHHHH
Q 007702           12 TIGNFLQGWDNATIAGA-IVYIKKDLN------LGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYFV   83 (592)
Q Consensus        12 ~l~~~~~g~~~~~~~~~-~~~i~~~~~------~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~-GRK~~li~~~~l~~i   83 (592)
                      .+..+...+....+.+. .+++.+++|      ++..+.+++.+++.++..++.++.|+++||+ |||++++++.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~   97 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV   97 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            33444444444444444 455778899      9999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHhhc-cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHH---HHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           84 SGLVMLWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL---PQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        84 ~~~~~~~s~-~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~---~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      +.+++++++ +++.++++|++.|++.+...+...++++|.+|+++|++..+.   .+.+..+|..+++.+  ...+.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~  175 (524)
T 2xut_A           98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS--MPLLLKNF  175 (524)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT--STHHHHTS
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc
Confidence            999999999 999999999999999999999999999999999999877666   888888888888443  33344567


Q ss_pred             chhHHHHHHHHHHHHHHHHH
Q 007702          160 SWRLMLGVLSIPALLYFAFA  179 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~  179 (592)
                      +||++|++.+++.++.+++.
T Consensus       176 g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          176 GAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHH
Confidence            89999998887766644443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.31  E-value=4e-11  Score=129.55  Aligned_cols=176  Identities=19%  Similarity=0.150  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhh----
Q 007702           16 FLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS----   91 (592)
Q Consensus        16 ~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s----   91 (592)
                      +.+......+....+.+.+..+.+............+...++.++++++.||+|||+.++.+.+...++.+..+..    
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~  366 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ  366 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc
Confidence            3333334444556677888888888777777778888899999999999999999999999988888777665542    


Q ss_pred             -ccHHHHH-HHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHh----HhcCCCchhHHH
Q 007702           92 -PNVYVLC-IARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM----SLLASPSWRLML  165 (592)
Q Consensus        92 -~~~~~ll-~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~----~~~~~~~Wr~~f  165 (592)
                       +....++ +.-+..+++. ...++.++|.+|++|++.|+..+++......+|.++++......    ......++..+|
T Consensus       367 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~  445 (491)
T 4gc0_A          367 APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY  445 (491)
T ss_dssp             CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence             2222222 2222223333 23467789999999999999999999888888877664332111    111223556678


Q ss_pred             HHHHHHHHHHHHHHHhhccCChhHHHhcCcHHH
Q 007702          166 GVLSIPALLYFAFAVFFLPESPRWLVSKGKMLE  198 (592)
Q Consensus       166 ~i~~i~~~~~~~l~~~~~pEsP~~l~~~~~~~e  198 (592)
                      ++.++++++.+++.++++|||      |||..|
T Consensus       446 ~i~~~~~~~~~i~~~~~~PET------kg~tLe  472 (491)
T 4gc0_A          446 WIYGCMGVLAALFMWKFVPET------KGKTLE  472 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCC------TTCCHH
T ss_pred             HHHHHHHHHHHHHHHheecCC------CCCCHH
Confidence            888888888888888999999      777655

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.27  E-value=1.3e-10  Score=123.77  Aligned_cols=169  Identities=17%  Similarity=0.067  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhc--CchHHHHHHHHHHH-HHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVYIKKD-LNLGTTVEGLVVAMSLIGATAITTCSGPISDWL--GRRPMLILSSVLYF-VSGL   86 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~i~~~-~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~--GRK~~li~~~~l~~-i~~~   86 (592)
                      ..+..++.......+....|.+.++ +|.+....+++.+...++.+++.++.|++.||+  |||+.++++.++.. ++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          257 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            3444444555555555566665555 899999999999999999999999999999999  99999988887776 6666


Q ss_pred             HHHhh--ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhh-HHHHHHHHHHHhHhcCCCchhH
Q 007702           87 VMLWS--PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        87 ~~~~s--~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      +..+.  .+.+.+.+.-++.|++.+...+....++.|.+|++.||+..++.+....+ |..+++.  ....+.+..+|+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~--~~g~l~~~~g~~~  414 (451)
T 1pw4_A          337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA--IVGYTVDFFGWDG  414 (451)
T ss_dssp             HTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSSCSHH
T ss_pred             HHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCcHH
Confidence            66665  37788888889999999988888899999999999999999999999998 9988843  3444455678999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 007702          164 MLGVLSIPALLYFAFAVF  181 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~  181 (592)
                      .|++.+++.++..++.++
T Consensus       415 ~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          415 GFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            998888777765544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.17  E-value=2.1e-10  Score=121.96  Aligned_cols=146  Identities=18%  Similarity=0.172  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 007702           41 TVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYIS  120 (592)
Q Consensus        41 ~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~  120 (592)
                      ...+++.++..++.+++.++.|+++||+|||++++++.++.+++.++.++.++.+.+++..++.+++.+...+....+++
T Consensus       259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  338 (417)
T 2cfq_A          259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT  338 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45577788888888999999999999999999999998888888777778888888888888888888777777888999


Q ss_pred             hhcCccccchhhHH-HHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCChh
Q 007702          121 ETAPSEIRGRLNTL-PQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPESPR  188 (592)
Q Consensus       121 E~~p~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~  188 (592)
                      |.+|++.||...++ .+....+|..+++..  ...+.+..++..+|.+.+++.++..++.+++.||.++
T Consensus       339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            99999999998887 476777787777433  3334445678888888888877766666667777643

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.08  E-value=2.6e-11  Score=128.92  Aligned_cols=168  Identities=14%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHH---HHHhh
Q 007702           16 FLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL---VMLWS   91 (592)
Q Consensus        16 ~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~---~~~~s   91 (592)
                      +........+.+.+|. +++++|++..+.+++.+++.++..++++++|+++||+|||++++++.+++.++..   ...++
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~   96 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG   96 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444455554 6667999999999999999999999999999999999999999998887755322   11222


Q ss_pred             ccHH-HHHHHHHHHHhhhhhhhhHHHHHHHhhcCc--cccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHH
Q 007702           92 PNVY-VLCIARLLDGFGVGLAVTLVPLYISETAPS--EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVL  168 (592)
Q Consensus        92 ~~~~-~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~  168 (592)
                      +... .++..+++.|++.|...+.....+.++.++  +.|+...+..+....+|..+++.+....  .+ .+||++|++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l--~~-~~~~~~f~~~  173 (417)
T 2cfq_A           97 PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIM--FT-INNQFVFWLG  173 (417)
T ss_dssp             HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHH--HH-HCSHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHH--HH-hchhHHHHHH
Confidence            2211 234456666665555443333333333332  3456666776667777777775443222  22 4799999877


Q ss_pred             HHHHHHHHHHHHhhccCC
Q 007702          169 SIPALLYFAFAVFFLPES  186 (592)
Q Consensus       169 ~i~~~~~~~l~~~~~pEs  186 (592)
                      +++.++..++.++..||+
T Consensus       174 ~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          174 SGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             TTTTTTHHHHSCSSCCCC
T ss_pred             HHHHHHHHHHHHHcCccc
Confidence            766554333333334454

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.07  E-value=3.6e-09  Score=112.18  Aligned_cols=147  Identities=4%  Similarity=-0.127  Sum_probs=114.7

Q ss_pred             HHHHHHH-HH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q 007702           23 ATIAGAI-VY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIA  100 (592)
Q Consensus        23 ~~~~~~~-~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~  100 (592)
                      ..+.... ++ +++.+|.+....+++.+.+.++.+++.++.|+++||+|||++++++.++..++.++..+.++.+.++..
T Consensus       275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (438)
T 3o7q_A          275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL  354 (438)
T ss_dssp             HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence            3333333 44 455569999999999999999999999999999999999999999999999998888888887665544


Q ss_pred             HHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCc-hhHHHHHHHHHHHH
Q 007702          101 RLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS-WRLMLGVLSIPALL  174 (592)
Q Consensus       101 R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~-Wr~~f~i~~i~~~~  174 (592)
                       ++.|++.+...+....+..|.+|++ |+...++.. ...+|..+++.+  .....+..+ ++..|.+.++..++
T Consensus       355 -~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~--~g~l~~~~g~~~~~~~~~~~~~~~  424 (438)
T 3o7q_A          355 -TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPV--MGFVSDAAGNIPTAELIPALCFAV  424 (438)
T ss_dssp             -HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHH--HHHHHHHHTSSGGGGHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHH--HHHHHHHhcchHHHHHHHHHHHHH
Confidence             8889999999999999999999977 888888766 455777776433  333444445 88888765554443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.00  E-value=1.3e-09  Score=117.60  Aligned_cols=158  Identities=10%  Similarity=-0.024  Sum_probs=116.8

Q ss_pred             HHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHH-----HHHHHHHHHHHHHHhhc-------
Q 007702           26 AGAIV-YIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLI-----LSSVLYFVSGLVMLWSP-------   92 (592)
Q Consensus        26 ~~~~~-~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li-----~~~~l~~i~~~~~~~s~-------   92 (592)
                      ...++ +..+.++.+....+++.+...++..++.++.+++.||+|||+...     ++.++.+++.++..+..       
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG  382 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            33344 345556766566777888888999999999999999999987655     66666677666655532       


Q ss_pred             --cHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHH
Q 007702           93 --NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSI  170 (592)
Q Consensus        93 --~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i  170 (592)
                        +.+.+++.-++.|++.+...+....++.|.+|++.||...++.+....+|..+++..  ... ....++...|.+.++
T Consensus       383 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~--~~~-~~~~~~~~~~~~~~~  459 (491)
T 4aps_A          383 KVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL--VTL-YNAKSEVAYFSYFGL  459 (491)
T ss_dssp             TCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHH--GGG-GGGSSTTHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-HhcccHHHHHHHHHH
Confidence              667778888999999999889999999999999999999999999999999888443  222 234467778888887


Q ss_pred             HHHHHHHHHHhhccCC
Q 007702          171 PALLYFAFAVFFLPES  186 (592)
Q Consensus       171 ~~~~~~~l~~~~~pEs  186 (592)
                      +.++..++.+++.|+.
T Consensus       460 ~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          460 GSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             HHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777666666666655

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.40  E-value=2.1e-07  Score=101.25  Aligned_cols=143  Identities=10%  Similarity=0.053  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHhhh----hhcCc----hHHHHHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHH
Q 007702           42 VEGLVVAMSLIGATAITTCSGPIS----DWLGR----RPMLILSSVLYFVSGLVMLWS---------PNVYVLCIARLLD  104 (592)
Q Consensus        42 ~~gli~s~~~lg~~ig~~~~G~l~----Dr~GR----K~~li~~~~l~~i~~~~~~~s---------~~~~~ll~~R~l~  104 (592)
                      ..+++.+...++..++.++.+.+.    +|.|+    ++.+.++.++.+++.++.++.         .+.+.+++.-++.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  415 (524)
T 2xut_A          336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL  415 (524)
T ss_dssp             CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence            355666666667777777776664    55543    356677777777777766663         3667788888999


Q ss_pred             HhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCC--Cch---------hHHHHHHHHHHH
Q 007702          105 GFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS--PSW---------RLMLGVLSIPAL  173 (592)
Q Consensus       105 G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~--~~W---------r~~f~i~~i~~~  173 (592)
                      |++.+...+....++.|.+|++.||+.+++.+....+|..+++.+.  ....+.  .+|         +..|++.+++.+
T Consensus       416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (524)
T 2xut_A          416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLAN--VSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAI  493 (524)
T ss_dssp             HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHH--HHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHH--HHhcccccccccccccccccccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999985443  333332  134         334666666666


Q ss_pred             HHHHHHHhhccCC
Q 007702          174 LYFAFAVFFLPES  186 (592)
Q Consensus       174 ~~~~l~~~~~pEs  186 (592)
                      +..++.+++.++.
T Consensus       494 ~~~~~~~~~~~~~  506 (524)
T 2xut_A          494 LAAIVFALYARSY  506 (524)
T ss_dssp             HHHHHHC------
T ss_pred             HHHHHHHHHHHHh
Confidence            6555555555554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.25  E-value=1.8e-07  Score=96.98  Aligned_cols=148  Identities=16%  Similarity=0.070  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHH-HHHHHH--HHHh
Q 007702           15 NFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVL-YFVSGL--VMLW   90 (592)
Q Consensus        15 ~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l-~~i~~~--~~~~   90 (592)
                      .+........+....|. +++.+|.+....+++.+...++..++.++.+++.||+|++  +..+..+ ..++..  ....
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~  285 (375)
T 2gfp_A          208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDW  285 (375)
T ss_dssp             HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence            33344444444444444 4555888888999999999999999999999999999883  3333333 222222  2222


Q ss_pred             --hccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhHHHHH
Q 007702           91 --SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV  167 (592)
Q Consensus        91 --s~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i  167 (592)
                        .++.+.+++.-++.|++.+...+....++.|.+| ++||+..++.+....+|..+++..  .....+..+|+..+.+
T Consensus       286 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~--~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          286 FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASL--SAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTT--CTHHHHHHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHH--HHHHhcCCcccHHHHH
Confidence              2367777788899999999999999999999999 899999999998888887776322  2222334456666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	592
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-13
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-07
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-10
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	8e-08

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 70.5 bits (171), Expect = 2e-13
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 6/188 (3%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPIS 65
            + +    G           A A+ Y+  +        G  ++   I         G +S
Sbjct: 25  QIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVS 83

Query: 66  DWLGRRPMLILSSVLYFVSGLVMLWSP----NVYVLCIARLLDGFGVGLAVTLVPLYISE 121
           D    R  L    +L     L M + P    ++ V+ +   L G+  G+        +  
Sbjct: 84  DRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH 143

Query: 122 TAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVF 181
               + RG + ++     + G  +   ++F + +     W   L + +  A+L   FA  
Sbjct: 144 WWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202

Query: 182 FLPESPRW 189
            + ++P+ 
Sbjct: 203 MMRDTPQS 210

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 6/188 (3%)

Query: 6   LVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPIS 65
           L+   A    F+       +  +  Y+K+  +           +        T   G +S
Sbjct: 250 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMS 309

Query: 66  DWLGRRPMLILSSVLYFVSGLVML-----WSPNVYVLCIARLLDGFGVGLAVTLVPLYIS 120
           D + R            +  +  +      + N  V  I  ++ GF +   V L+ L+  
Sbjct: 310 DKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHAL 369

Query: 121 ETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAV 180
           E AP +  G         G  G  +A   + G   +    W     V+   ++L     +
Sbjct: 370 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY-TVDFFGWDGGFMVMIGGSILAVILLI 428

Query: 181 FFLPESPR 188
             +    R
Sbjct: 429 VVMIGEKR 436

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 59.4 bits (142), Expect = 5e-10
 Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 4/197 (2%)

Query: 13  IGNFLQGWDNATIAGAI-VYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRR 71
           +  F   +          +++    ++  +  G++ A   + +       G +SD LG R
Sbjct: 14  LFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73

Query: 72  PMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRL 131
             L+       V            +L    L+     G+ +       +    + I    
Sbjct: 74  KYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133

Query: 132 NTLPQFTGSGGMFLAYCMVFGMSLL---ASPSWRLMLGVLSIPALLYFAFAVFFLPESPR 188
                  G   MF       G S++    + + + +  + S  AL+      F   ++P 
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193

Query: 189 WLVSKGKMLEAKQVLQR 205
                  +         
Sbjct: 194 SATVANAVGANHSAFSL 210

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 8e-08
 Identities = 30/193 (15%), Positives = 68/193 (35%), Gaps = 1/193 (0%)

Query: 7   VAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISD 66
           +++     +      +   A            GT V G V  M  +   +I   +  I +
Sbjct: 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284

Query: 67  WLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSE 126
            +G +  L+L+  +  V  +   ++ +   + I + L  F V   +     YI+      
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344

Query: 127 IRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES 186
               +  +  F     + + +  V   ++  S  ++    VL + AL +   +VF L   
Sbjct: 345 FSATIYLV-CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403

Query: 187 PRWLVSKGKMLEA 199
               + + ++ E 
Sbjct: 404 GPLSLLRRQVNEV 416

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	592
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.75
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.3
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.26
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.04

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.6e-18  Score=181.98  Aligned_cols=184  Identities=15%  Similarity=0.096  Sum_probs=160.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHH
Q 007702            4 AALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFV   83 (592)
Q Consensus         4 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i   83 (592)
                      +|.+++.++++++..+.+...++.+.|+++ ++|++.++.|++.+++.++..++++++|+++||+|||++++++.++.++
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~  101 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAA  101 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            466777788888888888888888888876 6899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh----ccHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCC
Q 007702           84 SGLVMLWS----PNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP  159 (592)
Q Consensus        84 ~~~~~~~s----~~~~~ll~~R~l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~  159 (592)
                      +.++++++    ++++.+++.|++.|++.|...+....+++|++|+++|++.+++.+.+..+|..+++...... .....
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~-~~~~~  180 (447)
T d1pw4a_         102 VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG-MAWFN  180 (447)
T ss_dssp             HHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH-HHHTC
T ss_pred             HHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH-hhhhh
Confidence            99888776    47789999999999999999999999999999999999999999999999988885443222 22345


Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          160 SWRLMLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       160 ~Wr~~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      +||+.|++.+++.++..++.+++++|+|+.
T Consensus       181 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (447)
T d1pw4a_         181 DWHAALYMPAFCAILVALFAFAMMRDTPQS  210 (447)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             cccccchhhhhhHHHHHHHHHHhcccchhh
Confidence            899999988888888777878888888765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=9e-12  Score=126.58  Aligned_cols=145  Identities=19%  Similarity=0.192  Sum_probs=123.9

Q ss_pred             chHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007702           40 TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYI  119 (592)
Q Consensus        40 ~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~~s~~~~~ll~~R~l~G~~~g~~~~~~~~~i  119 (592)
                      ....+...+...++..++..+.+++.||+|||+.+.++.++.+++.++..+.++.+.+++.-++.|++.+...+....++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  337 (417)
T d1pv7a_         258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI  337 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35667778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCccccchhhHHH-HHHHhhHHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHhhccCC
Q 007702          120 SETAPSEIRGRLNTLP-QFTGSGGMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVFFLPES  186 (592)
Q Consensus       120 ~E~~p~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~~~pEs  186 (592)
                      .|.+|++.||+..++. ++...+|..+++  ...+.+.+..||+.+|++.+++.++..++..+.+++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~--~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         338 TSQFEVRFSATIYLVCFCFFKQLAMIFMS--VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHSCGGGHHHHHHHHHTTTHHHHHHHHH--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHCCHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999998874 556677877774  3344455667899999988888887777766776654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=3.5e-11  Score=122.16  Aligned_cols=176  Identities=13%  Similarity=0.033  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHHH
Q 007702           11 ATIGNFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVML   89 (592)
Q Consensus        11 ~~l~~~~~g~~~~~~~~~~~~-i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~~   89 (592)
                      +++..|...+....+.+.+|. +++++|++.++.|++.+++.++..+++++.|+++||+|||++++++.++..++.++..
T Consensus        12 l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            344555666666677777765 7788999999999999999999999999999999999999999999999998888888


Q ss_pred             hhccHHHH----HHHHHHHHhhhhhhhhHHHHHHHhhcCc--cccchhhHHHHHHHhhHHHHHHHHHHHhHhcCCCchhH
Q 007702           90 WSPNVYVL----CIARLLDGFGVGLAVTLVPLYISETAPS--EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRL  163 (592)
Q Consensus        90 ~s~~~~~l----l~~R~l~G~~~g~~~~~~~~~i~E~~p~--~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~Wr~  163 (592)
                      +.++....    ++.+++.+.+.+...........+..++  +.+....+........+..+++.....  .. ..+|+.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~-~~~~~~  168 (417)
T d1pv7a_          92 IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI--MF-TINNQF  168 (417)
T ss_dssp             HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHH--HH-HHCHHH
T ss_pred             HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccc--cc-cccccc
Confidence            77665443    3445555555555444444443333332  234445555566666666666433322  22 235666


Q ss_pred             HHHHHHHHHHHHHHHHHhhccCChhH
Q 007702          164 MLGVLSIPALLYFAFAVFFLPESPRW  189 (592)
Q Consensus       164 ~f~i~~i~~~~~~~l~~~~~pEsP~~  189 (592)
                      .+........+..++..+..||+|+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (417)
T d1pv7a_         169 VFWLGSGCALILAVLLFFAKTDAPSS  194 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCSS
T ss_pred             cccchhhHHHHHHHHHHHHhcccccc
Confidence            66666666666666777888887654

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=3.8e-09  Score=109.12  Aligned_cols=154  Identities=16%  Similarity=0.074  Sum_probs=114.6

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhHHhhhhhcCchHHHHHHHHHHHHHHHHH---Hh--hccHHHHHHHHH
Q 007702           28 AIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVM---LW--SPNVYVLCIARL  102 (592)
Q Consensus        28 ~~~~i~~~~~~s~~~~gli~s~~~lg~~ig~~~~G~l~Dr~GRK~~li~~~~l~~i~~~~~---~~--s~~~~~ll~~R~  102 (592)
                      ...++.+.++.+....++..+...++.+++.++.|+++||++||+......+...+..+..   ..  ..+.+..++.-+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (447)
T d1pw4a_         272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI  351 (447)
T ss_dssp             HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHH
T ss_pred             hhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3445667788899999999999999999999999999999998775544444333222222   22  356777778888


Q ss_pred             HHHhhhhhhhhHHHHHHHhhcCccccchhhHHHHHHHhh-HHHHHHHHHHHhHhcCCCchhHHHHHHHHHHHHHHHHHHh
Q 007702          103 LDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSG-GMFLAYCMVFGMSLLASPSWRLMLGVLSIPALLYFAFAVF  181 (592)
Q Consensus       103 l~G~~~g~~~~~~~~~i~E~~p~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~~~~~~~~~Wr~~f~i~~i~~~~~~~l~~~  181 (592)
                      +.|++.+...+....+..|.+|++.||...++.+....+ |.++++  .......+..||+..|++..+..++..++.++
T Consensus       352 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~--~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         352 VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS--AIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            889998888889999999999999999999998777665 455553  33444556779999988877776665555444


Q ss_pred             hc
Q 007702          182 FL  183 (592)
Q Consensus       182 ~~  183 (592)
                      +.
T Consensus       430 ~~  431 (447)
T d1pw4a_         430 VM  431 (447)
T ss_dssp             HH
T ss_pred             HH
Confidence            43