Citrus Sinensis ID: 007712

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590--
Protein Sequence
METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTTVKY
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccHHHcccccccccccccEEEEcccHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccccHHHHHHHHHcHHHHHHHHHHccccccccccEEEEEEccEEEEEEccEEEEEEccccccEEEEcEEccccccccEEEEcccccccccccEEEEcccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccHHHccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHccccccHHHHccccHHHHHHHHccHHHccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccHHHHccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccHHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHHcccccccccccEEEEEEccEEEEEEccEEEEcccccccccccccccccccHHHHHHHHcccHHHcHccEEEEEEHccEEEEEEEEcc
Coil and Loop (DISEMBL)
metrfrgeahhfygmnsMDLRAVGKKTlewdlndwkwdgdlfiasklnpapnenigrqffplavgnssnsssscsdevnlgiengkrEVEKKRRAVVVedhnsyevaagglslklggnghplseremgnwagssgkktkfgggsssraVCQVedcgadlsnakdyhrrhkvCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLaghnkrrrktnpdavangsspnndqtsGYLLISLLRILSnmhssrsdqrtDQDLLSHLLRglaspagenggrgISGLLQEHQDMLNERTSAGNSEVVQAFLangqgcptpfrQQLNATvsempqqvslphdargaedqdgnvaqikmnnfdlndvyidsddgtedverspvpanlgtssidcpswvrqdsqqssppqtsgnsdsasaqspssssdaqsrTDRIVFKLfgkepndfplVLRAQILDWlshspsdmesyirpgCVILTIYLRQAEAAWEELCCDLTFSLSRlldlsndsfwtSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCifdltnnsnlenhlqvnaFLPAISMLQVRLFWTRHCLLEVTTTVKY
Flexible Loop (DISEMBL)
metrfrgeahhfygmnsmdlrAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEvnlgiengkrevekkrravvvedhnsyevaagglslklgGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVlqefdegkrscrrrlaghnkrrrktnpdavangsspnndqTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTsgnsdsasaqspssssdaqsrTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTTVKY
Low Complexity Region (SEG)
METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGnssnsssscsDEVNLGIENGkrevekkrravvveDHNSYEVAAGGLSLKLGGNGHPLSEREMGNWAgssgkktkfgggsssRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRqdsqqssppqtsGNsdsasaqspssssdaqsRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFslsrlldlsndsFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTTVKY
Disordered region (IsUnstruct)
*********HHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPA***NIGRQFFPL*****************************************YEVAAG***************************************VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD*************************************GYLLISLLRIL************************************************************AFLA*******************************************KMNNFDLNDVYI****************************************************************RIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTT***
Disordered Region (DISOPRED)
*****************************WDLNDWKWDGDLFIA***********************************************************************************************************VEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGK****************************************************************************************************************************************************************************************************************************************KLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTT***
Disordered Region (DISEMBL)
********AHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVG************VNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGHPLSEREMGN******************AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLA********************NNDQTSGYLLISLLRILSNM*********DQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSW*********************************RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTTVKY
Disordered Region (DISPRO)
**************MNSMD******KTLEWDLNDWKWDGDLFIASKLNPAP*****************************************RRA***E**********************************************SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRR****************************GYLLISLLRILSNM*********DQDLLSHLLRGLASP*******GISGLL*E*****N**********************************************************IKMNNFDLNDVYIDS**********P*********IDCP***********************************RTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTTVKY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFDFYICLSKFCIFDLTNNSNLENHLQVNAFLPAISMLQVRLFWTRHCLLEVTTTVKY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	592	2.2.26 [Sep-21-2011]
Q9S7P5	927	Squamosa promoter-binding	yes	no	0.844	0.539	0.554	1e-151
Q9SMX9	881	Squamosa promoter-binding	no	no	0.787	0.528	0.568	1e-144
Q75LH6	969	Squamosa promoter-binding	yes	no	0.881	0.538	0.431	1e-110
Q9LGU7	862	Squamosa promoter-binding	no	no	0.680	0.467	0.303	4e-47
Q8RY95	1035	Squamosa promoter-binding	no	no	0.243	0.139	0.532	1e-36
Q6Z8M8	1140	Squamosa promoter-binding	no	no	0.131	0.068	0.795	5e-36
A2YX04	1140	Squamosa promoter-binding	N/A	no	0.131	0.068	0.795	5e-36
Q700C2	988	Squamosa promoter-binding	no	no	0.179	0.107	0.638	3e-35
P93015	131	Squamosa promoter-binding	no	no	0.153	0.694	0.637	6e-29
Q38740	171	Squamosa promoter-binding	N/A	no	0.165	0.573	0.602	3e-28

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  536 bits (1381), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 306/552 (55%), Positives = 378/552 (68%), Gaps = 52/552 (9%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME R  GE       +S++    GK+++EWDLNDWKW+GDLF+A++LN            
Sbjct: 1   MEARIEGEVEG----HSLEYGFSGKRSVEWDLNDWKWNGDLFVATQLNHG---------- 46

Query: 61  PLAVGNSSNSSSSCSDEVNLGIENGKR---EVEKKRRAVVV---EDHNSYEVAAGGLSLK 114
                 SSNSSS+CSDE N+ I   +R   E +KKRRAV V   E+ N  +  A  L+L 
Sbjct: 47  ------SSNSSSTCSDEGNVEIMERRRIEMEKKKKRRAVTVVAMEEDNLKDDDAHRLTLN 100

Query: 115 LGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVC-QVEDCGADLSNAKDYHRRHKVCE 173
           LGGN          N  G+  KKTK GGG  SRA+C QV++CGADLS  KDYHRRHKVCE
Sbjct: 101 LGGN----------NIEGNGVKKTKLGGGIPSRAICCQVDNCGADLSKVKDYHRRHKVCE 150

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
           +HSKA+ ALVG +MQRFCQQCSRFHVL+EFDEGKRSCRRRLAGHNKRRRK NPD + NG+
Sbjct: 151 IHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRSCRRRLAGHNKRRRKANPDTIGNGT 210

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           S ++DQTS Y+LI+LL+ILSN+HS++SDQ  DQDLLSHLL+ L S AGE+ GR     L 
Sbjct: 211 SMSDDQTSNYMLITLLKILSNIHSNQSDQTGDQDLLSHLLKSLVSQAGEHIGRN----LV 266

Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQD 353
                     ++ N   + A L+  Q    P     + +VSE P Q    + A+     D
Sbjct: 267 GLLQGGGGLQASQNIGNLSALLSLEQA---PREDIKHHSVSETPWQEVYANSAQERVAPD 323

Query: 354 GNVAQIKMNNFDLNDVYIDSDDGTEDVER-SPVPANLGTSSIDCPSWVRQDSQQSSPPQT 412
            +  Q+K+N+FDLND+YIDSDD T D+ER SP P N  TSS+D      QDS+QSSPPQT
Sbjct: 324 RSEKQVKVNDFDLNDIYIDSDD-TTDIERSSPPPTNPATSSLD----YHQDSRQSSPPQT 378

Query: 413 S--GNSDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMES 470
           S   +  ++     SSS DAQSRTDRIVFKLFGKEPNDFP+ LR QIL+WL+H+P+DMES
Sbjct: 379 SRRNSDSASDQSPSSSSGDAQSRTDRIVFKLFGKEPNDFPVALRGQILNWLAHTPTDMES 438

Query: 471 YIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIY 530
           YIRPGC++LTIYLRQ EA+WEELCCDL+FSL RLLDLS+D  WT GW+Y RVQ+Q+AF +
Sbjct: 439 YIRPGCIVLTIYLRQDEASWEELCCDLSFSLRRLLDLSDDPLWTDGWLYLRVQNQLAFAF 498

Query: 531 NGLLAFDFYICL 542
           NG +  D  + L
Sbjct: 499 NGQVVLDTSLPL 510

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2

 Score =  511 bits (1315), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 310/545 (56%), Positives = 367/545 (67%), Gaps = 79/545 (14%)

Query: 1   METRFR--GEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQ 58
           ME R    GEA  FYG       +VGK+++EWDLNDWKWDGDLF+A++         GRQ
Sbjct: 1   MEARIDEGGEAQQFYG-------SVGKRSVEWDLNDWKWDGDLFLATQTTR------GRQ 47

Query: 59  FFPLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGN 118
           FFPL  GNSSNSSSSCSDE N          +KKRRAV ++   +     G L+L L G 
Sbjct: 48  FFPL--GNSSNSSSSCSDEGN----------DKKRRAVAIQGDTN-----GALTLNLNGE 90

Query: 119 GHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKA 178
              L             KKTK G      AVCQVE+C ADLS  KDYHRRHKVCEMHSKA
Sbjct: 91  SDGLF----------PAKKTKSG------AVCQVENCEADLSKVKDYHRRHKVCEMHSKA 134

Query: 179 SRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNND 238
           + A VG ++QRFCQQCSRFH+LQEFDEGKRSCRRRLAGHNKRRRKTNP+  ANG+ P++D
Sbjct: 135 TSATVGGILQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGN-PSDD 193

Query: 239 QTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDM 298
            +S YLLI+LL+ILSNMH    +   DQDL+SHLL+ L S AGE  G+ +  LL      
Sbjct: 194 HSSNYLLITLLKILSNMH----NHTGDQDLMSHLLKSLVSHAGEQLGKNLVELL------ 243

Query: 299 LNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQ 358
           L    S G+  +  + L   +  P            E  +Q S   D    E++  +  Q
Sbjct: 244 LQGGGSQGSLNIGNSALLGIEQAP-----------QEELKQFSARQDGTATENR--SEKQ 290

Query: 359 IKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDS 418
           +KMN+FDLND+YIDSDD   DVERSP P N  TSS+D PSW+     QSSPPQTS NSDS
Sbjct: 291 VKMNDFDLNDIYIDSDD--TDVERSPPPTNPATSSLDYPSWI----HQSSPPQTSRNSDS 344

Query: 419 ASAQSPSSSSD-AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCV 477
           AS QSPSSSS+ AQ RT RIVFKLFGKEPN+FP+VLR QILDWLSHSP+DMESYIRPGC+
Sbjct: 345 ASDQSPSSSSEDAQMRTGRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCI 404

Query: 478 ILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFD 537
           +LTIYLRQAE AWEEL  DL FSL +LLDLS+D  WT+GW+Y RVQ+Q+AF+YNG +  D
Sbjct: 405 VLTIYLRQAETAWEELSDDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVD 464

Query: 538 FYICL 542
             + L
Sbjct: 465 TSLSL 469

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75LH6|SPL6_ORYSJ Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1

 Score =  400 bits (1028), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/552 (43%), Positives = 328/552 (59%), Gaps = 30/552 (5%)

Query: 3   TRFRGEAHHFYG--MNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
            R   ++ H YG  +   D+    K+   WDLNDW+WD D F+A+ +  A    +     
Sbjct: 4   ARVGAQSRHLYGGGLGEPDMDRRDKRLFGWDLNDWRWDSDRFVATPVPAAEASGLAL--- 60

Query: 61  PLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEV-----AAGGLSLKL 115
                NSS SSS  +   ++   N + + +K++R VV++D +  +        G LSL++
Sbjct: 61  -----NSSPSSSEEAGAASVRNVNARGDSDKRKRVVVIDDDDVEDDELVENGGGSLSLRI 115

Query: 116 GGNGHPLSEREMG--NWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
           GG+         G  +    +GKK +  GGS S   CQVE C ADL+  +DYHRRHKVCE
Sbjct: 116 GGDAVAHGAGVGGGADEEDRNGKKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCE 175

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
           MH+KA+ A+VGN +QRFCQQCSRFH LQEFDEGKRSCRRRLAGHN+RRRKT P+    GS
Sbjct: 176 MHAKATTAVVGNTVQRFCQQCSRFHPLQEFDEGKRSCRRRLAGHNRRRRKTRPEVAVGGS 235

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           +   D+ S YLL+ LL + +N+++  ++    Q+L+S LLR L + A     + +  LL+
Sbjct: 236 AFTEDKISSYLLLGLLGVCANLNADNAEHLRGQELISGLLRNLGAVAKSLDPKELCKLLE 295

Query: 294 EHQDMLNERTSAGNSEVVQAFL-------ANGQGCPTPFRQQLNATVSEMPQQVSLPHDA 346
             Q M  + ++AG SE   A +       A       PF   +N     +     +P  +
Sbjct: 296 ACQSM-QDGSNAGTSETANALVNTAVAEAAGPSNSKMPF---VNGDQCGLASSSVVPVQS 351

Query: 347 RGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQ 406
           +       +    K  +FDLND Y   +   +  E SP PA   T S +CPSW+ QDS Q
Sbjct: 352 KSPTVATPDPPACKFKDFDLNDTYGGMEGFEDGYEGSPTPAFKTTDSPNCPSWMHQDSTQ 411

Query: 407 SSPPQTSGNSD-SASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSP 465
            SPPQTSGNSD +++    SS+ DAQ RTD+IVFKLF K P+D P VLR+QIL WLS SP
Sbjct: 412 -SPPQTSGNSDSTSAQSLSSSNGDAQCRTDKIVFKLFEKVPSDLPPVLRSQILGWLSSSP 470

Query: 466 SDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQ 525
           +D+ESYIRPGC+ILT+YLR  E+AW+EL  +++  L +LL+ S  +FW SG V+  V+HQ
Sbjct: 471 TDIESYIRPGCIILTVYLRLVESAWKELSDNMSSYLDKLLNSSTGNFWASGLVFVMVRHQ 530

Query: 526 IAFIYNGLLAFD 537
           IAF++NG L  D
Sbjct: 531 IAFMHNGQLMLD 542

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LGU7|SPL1_ORYSJ Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1

 Score =  189 bits (481), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 158/521 (30%), Positives = 226/521 (43%), Gaps = 118/521 (22%)

Query: 22  AVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFFPLAVGNSSNSSSSCSDEVNLG 81
            + KK LEWDLNDW+WD +LF+A+  N +P++   R+                  E++ G
Sbjct: 4   GLKKKGLEWDLNDWRWDSNLFLATPSNASPSKCSRREL------------GRAEGEIDFG 51

Query: 82  IENGKREVEKKRRAVVVEDHNSYE----VAAGGLSLKLGGNGHPLSEREMGNWAGSSGKK 137
           + +       KRR V  ED +  E        G   ++ G     SE EM          
Sbjct: 52  VVD-------KRRRVSPEDDDGEECINAATTNGDDGQISGQRGRSSEDEM---------- 94

Query: 138 TKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRF 197
            + G  SSS   CQV+ C  +LS+A+DY++RHKVCE+H+K+    + NV  RFCQQCSRF
Sbjct: 95  PRQGTCSSSGPCCQVDGCTVNLSSARDYNKRHKVCEVHTKSGVVRIKNVEHRFCQQCSRF 154

Query: 198 HVLQEFDEGKRSCRRRLAGHNKRRRKTNPDA-VANGSSPNNDQTSGYLLISLLRILSNMH 256
           H LQEFDEGK+SCR RLA HN+RRRK    A V   S   N   S  LL+ L ++     
Sbjct: 155 HFLQEFDEGKKSCRSRLAQHNRRRRKVQVQAGVDVNSLHENHSLSNTLLLLLKQLSGLDS 214

Query: 257 SSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLA 316
           S  S+Q    + L++L++ LA+ AG           Q +QDML    SA  +     ++A
Sbjct: 215 SGPSEQINGPNYLTNLVKNLAALAGT----------QRNQDMLKNANSAAIASHTGNYVA 264

Query: 317 NGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQ-DGNVAQIKMNNFDLNDVYIDSDD 375
            G                      S PH   G E   +    + ++ NFDLND Y++ D+
Sbjct: 265 KGNSL-----------------HDSRPHIPVGTESTAEEPTVERRVQNFDLNDAYVEGDE 307

Query: 376 GTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSSDAQSRTD 435
              D     V    G    D PS +R                   AQ  S  S+  S  +
Sbjct: 308 NRTD---KIVFKLFGKEPNDFPSDLR-------------------AQILSWLSNCPSDIE 345

Query: 436 RIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCC 495
             +       P    L +  ++ +W+                            W++L  
Sbjct: 346 SYI------RPGCIILTIYMRLPNWM----------------------------WDKLAA 371

Query: 496 DLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAF 536
           D    + +L+ LS D+ W +GW+YARVQ  +    NG L  
Sbjct: 372 DPAHWIQKLISLSTDTLWRTGWMYARVQDYLTLSCNGNLML 412

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score =  155 bits (391), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 100/152 (65%), Gaps = 8/152 (5%)

Query: 110 GLSLKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRH 169
           GL L LG     + E           KK + G    +  +CQV++C  DLS+AKDYHRRH
Sbjct: 80  GLDLNLGSGLTAVEETTTTTQNVRPNKKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRH 139

Query: 170 KVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN-PDA 228
           KVCE+HSKA++ALVG  MQRFCQQCSRFH+L EFDEGKRSCRRRLAGHN+RRRKT  P+ 
Sbjct: 140 KVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTTQPEE 199

Query: 229 VANG-------SSPNNDQTSGYLLISLLRILS 253
           VA+G        + NN   +   L++LL  L+
Sbjct: 200 VASGVVVPGNHDTTNNTANANMDLMALLTALA 231

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z8M8|SPL15_ORYSJ Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1

 Score =  152 bits (385), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+DC ADL+NAKDYHRRHKVCE+H K ++ALVGN MQRFCQQCSRFH L EFDEGKR
Sbjct: 186 MCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKR 245

Query: 209 SCRRRLAGHNKRRRKTNPDAVAN 231
           SCRRRLAGHN+RRRKT P  VA+
Sbjct: 246 SCRRRLAGHNRRRRKTQPTDVAS 268

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YX04|SPL15_ORYSI Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1

 Score =  152 bits (385), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+DC ADL+NAKDYHRRHKVCE+H K ++ALVGN MQRFCQQCSRFH L EFDEGKR
Sbjct: 186 MCQVDDCRADLTNAKDYHRRHKVCEIHGKTTKALVGNQMQRFCQQCSRFHPLSEFDEGKR 245

Query: 209 SCRRRLAGHNKRRRKTNPDAVAN 231
           SCRRRLAGHN+RRRKT P  VA+
Sbjct: 246 SCRRRLAGHNRRRRKTQPTDVAS 268

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q700C2|SPL16_ARATH Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2

 Score =  150 bits (379), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/108 (63%), Positives = 85/108 (78%), Gaps = 2/108 (1%)

Query: 150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS 209
           CQV++C  DLS AKDYHRRHKVCE+HSKA++ALVG  MQRFCQQCSRFH+L EFDEGKRS
Sbjct: 82  CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 141

Query: 210 CRRRLAGHNKRRRKTNPDAVANG--SSPNNDQTSGYLLISLLRILSNM 255
           CRRRL GHN+RRRKT PDA+ +   +  N D TS    + ++ +L+ +
Sbjct: 142 CRRRLDGHNRRRRKTQPDAITSQVVALENRDNTSNNTNMDVMALLTAL 189

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2

 Score =  129 bits (324), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 58/91 (63%), Positives = 68/91 (74%)

Query: 137 KTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSR 196
           K + G  +SS  VCQVE C AD+S AK YH+RHKVC+ H+KA    +  + QRFCQQCSR
Sbjct: 41  KKQKGKATSSSGVCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSR 100

Query: 197 FHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD 227
           FH L EFDE KRSCRRRLAGHN+RRRK+  D
Sbjct: 101 FHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/98 (60%), Positives = 74/98 (75%)

Query: 138 TKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRF 197
           T  GGG  ++  C VE+CGADL N K Y++RH+VCE+H+KA    V  +MQRFCQQCSRF
Sbjct: 73  TASGGGVVAQPCCLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRF 132

Query: 198 HVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSP 235
           H L EFD+ KRSCRRRLAGHN+RRRK++ ++   G SP
Sbjct: 133 HDLSEFDQTKRSCRRRLAGHNERRRKSSLESHKEGRSP 170

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
255548291	1012	conserved hypothetical protein [Ricinus	0.907	0.530	0.692	0.0
225437714	997	PREDICTED: squamosa promoter-binding-lik	0.898	0.533	0.687	0.0
356499594	1010	PREDICTED: squamosa promoter-binding-lik	0.902	0.528	0.650	0.0
359480217	963	PREDICTED: squamosa promoter-binding-lik	0.861	0.529	0.680	0.0
449461697	1013	PREDICTED: squamosa promoter-binding-lik	0.907	0.530	0.631	0.0
297744051	860	unnamed protein product [Vitis vinifera]	0.836	0.575	0.677	0.0
449518123	1014	PREDICTED: LOW QUALITY PROTEIN: squamosa	0.907	0.529	0.629	0.0
357442095	1003	SQUAMOSA promoter binding protein [Medic	0.886	0.523	0.628	1e-178
225432161	1029	PREDICTED: squamosa promoter-binding-lik	0.895	0.515	0.561	1e-172
422779156	1029	squamosa promoter binding protein 5 [Vit	0.895	0.515	0.558	1e-169

>gi|255548291|ref|XP_002515202.1| conserved hypothetical protein [Ricinus communis] gi|223545682|gb|EEF47186.1| conserved hypothetical protein [Ricinus communis]

 Score =  747 bits (1929), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/565 (69%), Positives = 448/565 (79%), Gaps = 28/565 (4%)

Query: 1   METRFRGEA--HHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQ 58
           ME RF GEA  HHFYGM++ DLRAV K++LEWDLNDWKWDGDLFIAS LNP P+ N+ RQ
Sbjct: 1   MEARFGGEAQAHHFYGMSAADLRAVEKRSLEWDLNDWKWDGDLFIASPLNPVPSSNMSRQ 60

Query: 59  FFPLAVGNSSNSSSSCS-----DEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
           FFP+A G  +N +SS S     DEVNLGIE GKRE+EK+RR +V+ED N  +   G LSL
Sbjct: 61  FFPIATGTPTNGNSSNSSSSCSDEVNLGIEKGKRELEKRRRVIVIEDDNLNDEGVGSLSL 120

Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
           KLGG+G P+SERE+GNW G+SGKKTK  GGS SRAVCQVEDCGADLS+AKDYHRRHKVCE
Sbjct: 121 KLGGHGFPVSEREIGNWEGNSGKKTKLVGGSMSRAVCQVEDCGADLSSAKDYHRRHKVCE 180

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
           MHSKAS+ALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD V N S
Sbjct: 181 MHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDTVGNAS 240

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           + N++QTS YLLISLL+ILSNMHS+RSDQ TDQDLLSHLLR LAS + E+GG+ +SGLLQ
Sbjct: 241 TLNDEQTSSYLLISLLKILSNMHSNRSDQVTDQDLLSHLLRSLASQSMEHGGKKLSGLLQ 300

Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
           E + +LN  TS  NSEV   F+ N  G     +  L    S M Q+V   H A G     
Sbjct: 301 EPRALLNGGTSFRNSEVFLTFILNALGLLRSLKLHLIVPFSGMSQRVLCSHGANGPNVQT 360

Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
                          +E +D    Q+KMNNFDLND+YIDSDDG ED+ERSPVP N+GTSS
Sbjct: 361 SSSMKPSIPNNYPAYSEVRDSTAVQVKMNNFDLNDIYIDSDDGAEDIERSPVPTNMGTSS 420

Query: 394 IDCPSWVRQDSQQSSPPQTSGN-SDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLV 452
           +DCPSW++QDS QSSPPQTSGN   +++    SSS DAQSRTDRI+FKLFGKEPNDFPLV
Sbjct: 421 LDCPSWIQQDSHQSSPPQTSGNSDSASAQSPSSSSGDAQSRTDRIIFKLFGKEPNDFPLV 480

Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
           LRAQILDWLSHSP+D+ESYIRPGCVILTIYLRQAEAAWEELCC+L+ SLSRLLD+S+++F
Sbjct: 481 LRAQILDWLSHSPTDIESYIRPGCVILTIYLRQAEAAWEELCCNLSSSLSRLLDVSDNAF 540

Query: 513 WTSGWVYARVQHQIAFIYNGLLAFD 537
           W +GW Y RVQHQIAFIYNG +  D
Sbjct: 541 WRTGWAYIRVQHQIAFIYNGQVVVD 565

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437714|ref|XP_002273228.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 1 [Vitis vinifera]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/560 (68%), Positives = 437/560 (78%), Gaps = 28/560 (5%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME +  GEAHHFYG+ + DLR VGK++ EWD N+WKWDGDLFIAS +NP P++   +QFF
Sbjct: 1   MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFF 60

Query: 61  P-----LAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKL 115
           P        G SSNSSSSCSDEVNLGIE  KRE+EK+RR +VV+D N      G LSLKL
Sbjct: 61  PHGSAIPVTGGSSNSSSSCSDEVNLGIEKRKRELEKRRRVIVVQDDND---ETGTLSLKL 117

Query: 116 GGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMH 175
           GG+GH +SERE+GNW G+SGKKTK  G SSSRAVCQVEDCGADLS AKDYHRRHKVCEMH
Sbjct: 118 GGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMH 177

Query: 176 SKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSP 235
           SKA  ALVGN MQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKT+PDA  NG+S 
Sbjct: 178 SKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSL 237

Query: 236 NNDQTSGYLLISLLRILSNMHSS-RSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQE 294
           N+DQ SGYLLISLLRILSNMHS+ +SDQ  DQDLLSHLLR LAS  G NG R ISGLLQE
Sbjct: 238 NDDQASGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQE 297

Query: 295 HQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQD 353
            Q +LN+  S GN+EVV A L NG Q  P P +        ++P+   LP      E + 
Sbjct: 298 SQ-LLNDGISVGNTEVVSALLPNGSQAPPRPIKHL------KVPESEILPKGVHADEARV 350

Query: 354 GNV----------AQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQD 403
           GN+           QIK+NNFDLND+YIDSDDG ED+ERSPVP NLGT S++CPSWV+QD
Sbjct: 351 GNMQMTSLRDSTAGQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQD 410

Query: 404 SQQSSPPQTSGN-SDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLS 462
           S QSSPPQTSGN   +++    SSS +AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLS
Sbjct: 411 SHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLS 470

Query: 463 HSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARV 522
           HSP+D+ESYIRPGC++LTIYLR  E+ WEELCCDL  SLSRLLD+SND+FW +GWVY RV
Sbjct: 471 HSPTDIESYIRPGCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRV 530

Query: 523 QHQIAFIYNGLLAFDFYICL 542
           QHQIAFIYNG +  D  + L
Sbjct: 531 QHQIAFIYNGQVVVDMSLPL 550

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499594|ref|XP_003518623.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Glycine max]

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/567 (65%), Positives = 437/567 (77%), Gaps = 33/567 (5%)

Query: 1   METRFRGEAHHFYGMN-SMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIG--R 57
           ME +F  EA+HFYG+  S DLR VGK++ EWDLNDW+WDGDLFIAS+LNP P + +G  +
Sbjct: 1   MEAKFGAEAYHFYGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQ 60

Query: 58  QFFPLA----VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
           QFFP+     V    ++SSS S+EV+       +E +KKRR +V+ED    E   G LSL
Sbjct: 61  QFFPIGSGIPVAGGPSNSSSTSEEVDPRDPKANKEGDKKRRVIVLEDDGLNE-EGGTLSL 119

Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
           KLGG+   + +RE+G+W G++GKK++  G +S+RAVCQVEDC ADLS AKDYHRRHKVCE
Sbjct: 120 KLGGHASAVVDREVGSWDGTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCE 179

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
           MHSKASRALVGN MQRFCQQCSRFH+LQEFDEGKRSCRRRLAGHNKRRRKTN +AV NGS
Sbjct: 180 MHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGS 239

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           S N+DQTS YLLISLL+ILSNMHS RSDQ TDQDLL+H+LR LAS  GE GG+ I+ LL+
Sbjct: 240 SLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHILRSLASQNGEQGGKNIANLLR 299

Query: 294 EHQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQ 352
           E +++L E  S+  SE++    +NG QG P+  RQ    ++++M QQV   HDA GA DQ
Sbjct: 300 EPENLLREDGSSRKSEMMSTLFSNGSQGSPSNIRQHETVSMAKMQQQVMHAHDA-GASDQ 358

Query: 353 ---------------------DGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGT 391
                                D    QIKMNNFDLND+YIDSDDG ED+ER PV  NL T
Sbjct: 359 QITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVT 418

Query: 392 SSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFP 450
           SS+D P W +QDS QSSPPQTSGNSDSASAQSPSSSS +AQSRTDRIVFKLFGKEPNDFP
Sbjct: 419 SSLDYP-WAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFP 477

Query: 451 LVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSND 510
           LVLRAQILDWLSHSP+DMESYIRPGC++LTIYLRQAEA WEELC DLT SL+RLLD+S+D
Sbjct: 478 LVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDD 537

Query: 511 SFWTSGWVYARVQHQIAFIYNGLLAFD 537
           +FW +GWV+ RVQHQ+AFI+NG +  D
Sbjct: 538 TFWRNGWVHIRVQHQMAFIFNGQVVID 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480217|ref|XP_003632418.1| PREDICTED: squamosa promoter-binding-like protein 12-like isoform 2 [Vitis vinifera]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/548 (68%), Positives = 420/548 (76%), Gaps = 38/548 (6%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME +  GEAHHFYG+ + DLR VGK++ EWD N+WKWDGDLFIAS +NP P++   +QFF
Sbjct: 1   MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFF 60

Query: 61  P-----LAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKL 115
           P        G SSNSSSSCSDEVNLGIE  KRE+EK+RR +VV+D N      G LSLKL
Sbjct: 61  PHGSAIPVTGGSSNSSSSCSDEVNLGIEKRKRELEKRRRVIVVQDDND---ETGTLSLKL 117

Query: 116 GGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMH 175
           GG+GH +SERE+GNW G+SGKKTK  G SSSRAVCQVEDCGADLS AKDYHRRHKVCEMH
Sbjct: 118 GGHGHSVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMH 177

Query: 176 SKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSP 235
           SKA  ALVGN MQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKT+PDA  NG+S 
Sbjct: 178 SKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSL 237

Query: 236 NNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEH 295
           N+DQ SGYLLISLLRILSNMH     Q  DQDLLSHLLR LAS  G NG R ISGLLQE 
Sbjct: 238 NDDQASGYLLISLLRILSNMHY----QTKDQDLLSHLLRSLASYGGTNGSRNISGLLQES 293

Query: 296 QDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGN 355
           Q +LN+  S GN+EV         G   P +  L                   +E +D  
Sbjct: 294 Q-LLNDGISVGNTEV--------PGIMFPIKDSLPVY----------------SEVRDST 328

Query: 356 VAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGN 415
             QIK+NNFDLND+YIDSDDG ED+ERSPVP NLGT S++CPSWV+QDS QSSPPQTSGN
Sbjct: 329 AGQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGN 388

Query: 416 -SDSASAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRP 474
              +++    SSS +AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSP+D+ESYIRP
Sbjct: 389 SDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRP 448

Query: 475 GCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLL 534
           GC++LTIYLR  E+ WEELCCDL  SLSRLLD+SND+FW +GWVY RVQHQIAFIYNG +
Sbjct: 449 GCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQV 508

Query: 535 AFDFYICL 542
             D  + L
Sbjct: 509 VVDMSLPL 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461697|ref|XP_004148578.1| PREDICTED: squamosa promoter-binding-like protein 12-like [Cucumis sativus]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/570 (63%), Positives = 431/570 (75%), Gaps = 33/570 (5%)

Query: 1   METRFRGEAHHFYGMNSMDLRA-VGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQF 59
           ME  + GEA   YGM +MDLRA VGK+ LEWDLNDWKWDGDLFIA  LN   + ++ RQ 
Sbjct: 1   MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQL 60

Query: 60  FPLAVG------NSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
           FP+  G       SSNSSSSCSDE N+GIE GKREVEK+RR  V+ED N  +  A  LSL
Sbjct: 61  FPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLND-EARTLSL 119

Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
           K+GGNG  + ER+ G+W G+SGKKTK  GG+S+RAVCQVEDCGADLSNAKDYHRRHKVCE
Sbjct: 120 KVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCE 179

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
            HSKAS ALV NVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRK NPD V NG+
Sbjct: 180 THSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGN 239

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           SP ++QTS YLL++LLRIL+N+HS+ S+Q TDQDLLSHL+R LA  + E+GG+ +SG+L 
Sbjct: 240 SPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILH 299

Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
           E Q++LN     G S++V  FL+NG   P    +Q +  + E P Q       RG     
Sbjct: 300 EPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAI----GRGGDTPA 355

Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
                          +E +D  V Q KM NFDLND Y+DSDDG ED+ER  +P ++GTSS
Sbjct: 356 ISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSS 415

Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPLV 452
           ++CPSWV+QDS QSSPPQTSGNSDSASAQSPSSS+ +AQSRTDRI+ KLFGK PNDFP V
Sbjct: 416 LECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHV 475

Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
           LRAQ+LDWLSHSP+++ESYIRPGCV+LT+Y+RQ EAAW+ LC DL+ S +RLLD+S+D+F
Sbjct: 476 LRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAF 535

Query: 513 WTSGWVYARVQHQIAFIYNGLLAFDFYICL 542
           W +GWVY RVQHQIAF+Y G +  D  + L
Sbjct: 536 WKTGWVYVRVQHQIAFVYQGQVVVDTSLPL 565

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744051|emb|CBI37021.3| unnamed protein product [Vitis vinifera]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/548 (67%), Positives = 416/548 (75%), Gaps = 53/548 (9%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME +  GEAHHFYG+ + DLR VGK++ EWD N+WKWDGDLFIAS +NP P++   +QFF
Sbjct: 1   MEAKIGGEAHHFYGIGTSDLRVVGKRSSEWDSNEWKWDGDLFIASPMNPVPSDYTSQQFF 60

Query: 61  PLAVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGGNGH 120
           P                    I   KRE+EK+RR +VV+D N      G LSLKLGG+GH
Sbjct: 61  PHGSA----------------IPKRKRELEKRRRVIVVQDDND---ETGTLSLKLGGHGH 101

Query: 121 PLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASR 180
            +SERE+GNW G+SGKKTK  G SSSRAVCQVEDCGADLS AKDYHRRHKVCEMHSKA  
Sbjct: 102 SVSEREVGNWEGTSGKKTKLAGVSSSRAVCQVEDCGADLSKAKDYHRRHKVCEMHSKAGC 161

Query: 181 ALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQT 240
           ALVGN MQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKT+PDA  NG+S N+DQ 
Sbjct: 162 ALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHPDAAGNGNSLNDDQA 221

Query: 241 SGYLLISLLRILSNMHSS-RSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQDML 299
           SGYLLISLLRILSNMHS+ +SDQ  DQDLLSHLLR LAS  G NG R ISGLLQE Q +L
Sbjct: 222 SGYLLISLLRILSNMHSNDKSDQTKDQDLLSHLLRSLASYGGTNGSRNISGLLQESQ-LL 280

Query: 300 NERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARGAEDQDGNVA-- 357
           N+  S GN+EVV A L NG                               E + GN+   
Sbjct: 281 NDGISVGNTEVVSALLPNG---------------------------VHADEARVGNMQMT 313

Query: 358 --QIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGN 415
             QIK+NNFDLND+YIDSDDG ED+ERSPVP NLGT S++CPSWV+QDS QSSPPQTSGN
Sbjct: 314 SWQIKLNNFDLNDIYIDSDDGMEDLERSPVPENLGTGSLECPSWVQQDSHQSSPPQTSGN 373

Query: 416 SDSASAQSPSSS-SDAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRP 474
           SDSASAQSPSSS  +AQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSP+D+ESYIRP
Sbjct: 374 SDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRP 433

Query: 475 GCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLL 534
           GC++LTIYLR  E+ WEELCCDL  SLSRLLD+SND+FW +GWVY RVQHQIAFIYNG +
Sbjct: 434 GCIVLTIYLRLPESTWEELCCDLGSSLSRLLDVSNDTFWRTGWVYIRVQHQIAFIYNGQV 493

Query: 535 AFDFYICL 542
             D  + L
Sbjct: 494 VVDMSLPL 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518123|ref|XP_004166093.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 12-like [Cucumis sativus]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/570 (62%), Positives = 430/570 (75%), Gaps = 33/570 (5%)

Query: 1   METRFRGEAHHFYGMNSMDLRA-VGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQF 59
           ME  + GEA   YGM +MDLRA VGK+ LEWDLNDWKWDGDLFIA  LN   + ++ RQ 
Sbjct: 1   MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQL 60

Query: 60  FPLAVG------NSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSL 113
           FP+  G       SSNSSSSCSDE N+GIE GKREVEK+RR  V+ED N  +  A  LSL
Sbjct: 61  FPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLND-EARTLSL 119

Query: 114 KLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCE 173
           K+GGNG  + ER+ G+W G+SGKKTK  GG+S+RAVCQVEDCGADLSNAKDYHRRHKVCE
Sbjct: 120 KVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCE 179

Query: 174 MHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGS 233
            HSKAS ALV NVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRK NPD V NG+
Sbjct: 180 THSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGN 239

Query: 234 SPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQ 293
           SP ++QTS YLL++LLRIL+N+HS+ S+Q TDQDLLSHL+R LA  + E+G + +SG+L 
Sbjct: 240 SPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGXKNLSGILH 299

Query: 294 EHQDMLNERTSAGNSEVVQAFLANGQGCPTPFRQQLNATVSEMPQQVSLPHDARG----- 348
           E Q++LN     G S++V  FL+NG   P    +Q +  + E P Q       RG     
Sbjct: 300 EPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPETPAQAI----GRGGDTPA 355

Query: 349 ---------------AEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTSS 393
                          +E +D  V Q KM NFDLND Y+DSDDG ED+ER  +P ++GTSS
Sbjct: 356 ISSIKPSTSNSPPAYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSS 415

Query: 394 IDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPLV 452
           ++CPSWV+QDS QSSPPQTSGNSDSASAQSPSSS+ +AQSRTDRI+ KLFGK PNDFP V
Sbjct: 416 LECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSTGEAQSRTDRIILKLFGKAPNDFPHV 475

Query: 453 LRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDSF 512
           LRAQ+LDWLSHSP+++ESYIRPGCV+LT+Y+RQ EAAW+ LC DL+ S +RLLD+S+D+F
Sbjct: 476 LRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEAAWDNLCHDLSTSFNRLLDVSDDAF 535

Query: 513 WTSGWVYARVQHQIAFIYNGLLAFDFYICL 542
           W +GWVY RVQHQIAF+Y G +  D  + L
Sbjct: 536 WKTGWVYVRVQHQIAFVYQGQVVVDTSLPL 565

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357442095|ref|XP_003591325.1| SQUAMOSA promoter binding protein [Medicago truncatula] gi|355480373|gb|AES61576.1| SQUAMOSA promoter binding protein [Medicago truncatula]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 356/566 (62%), Positives = 426/566 (75%), Gaps = 41/566 (7%)

Query: 1   METRFRGEAHHFYGMN-SMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNEN--IGR 57
           M  R   E +HFYG+  S DL  +GK++ EW+LNDW+WDGDLFIAS++N    E+  +G+
Sbjct: 1   MGERLGAENYHFYGVGGSSDLSGMGKRSREWNLNDWRWDGDLFIASRVNQVQAESLRVGQ 60

Query: 58  QFFPL-----AVGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLS 112
           QFFPL      VG SSN+SSSCS+E +L  E G +E EKKRR +V+ED +     AG LS
Sbjct: 61  QFFPLGSGIPVVGGSSNTSSSCSEEGDL--EKGNKEGEKKRRVIVLED-DGLNDKAGALS 117

Query: 113 LKLGGNGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVC 172
           L L G+  P+ ER+        GKK++  GG+S+RAVCQVEDCGADLS  KDYHRRHKVC
Sbjct: 118 LNLAGHVSPVVERD--------GKKSRGAGGTSNRAVCQVEDCGADLSRGKDYHRRHKVC 169

Query: 173 EMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANG 232
           EMHSKASRALVGN MQRFCQQCSRFH+L+EFDEGKRSCRRRLAGHNKRRRKTN +AV NG
Sbjct: 170 EMHSKASRALVGNAMQRFCQQCSRFHILEEFDEGKRSCRRRLAGHNKRRRKTNQEAVPNG 229

Query: 233 SSPNNDQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLL 292
           S  N+DQTS YLLISLL+ILSNMHS RSDQ TDQDLL+HLLR LAS   E G + +S LL
Sbjct: 230 SPTNDDQTSSYLLISLLKILSNMHSDRSDQPTDQDLLTHLLRSLASQNDEQGSKNLSNLL 289

Query: 293 QEHQDMLNERTSAGNSEVVQAFLANG-QGCPTPFRQQLNATVSEMPQQVSLPHDARGAED 351
           +E +++L E  S+ NS +V A  +NG QG PT   Q    ++++M Q++   HD R ++ 
Sbjct: 290 REQENLLREGGSSRNSGMVSALFSNGSQGSPTVITQHQPVSMNQMQQEMVHTHDVRTSDH 349

Query: 352 Q-------------------DGNVAQIKMNNFDLNDVYIDSDDGTEDVERSPVPANLGTS 392
           Q                     +  Q KMNNFDLND+Y+DSDDGTED+ER PV  NL TS
Sbjct: 350 QLISSIKPSISNSPPAYSETRDSSGQTKMNNFDLNDIYVDSDDGTEDLERLPVSTNLATS 409

Query: 393 SIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSRTDRIVFKLFGKEPNDFPL 451
           S+D P W +QDS QSSP QTSGNSDSASAQSPSSSS +AQSRTDRIVFKLFGKEPN+FPL
Sbjct: 410 SVDYP-WTQQDSHQSSPAQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPL 468

Query: 452 VLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFSLSRLLDLSNDS 511
           VLRAQILDWLS SP+D+ESYIRPGC++LTIYLRQAEA WEELCCDLT SL +LLD+S+D+
Sbjct: 469 VLRAQILDWLSQSPTDIESYIRPGCIVLTIYLRQAEAVWEELCCDLTSSLIKLLDVSDDT 528

Query: 512 FWTSGWVYARVQHQIAFIYNGLLAFD 537
           FW +GWV+ RVQHQ+AFI+NG +  D
Sbjct: 529 FWKTGWVHIRVQHQMAFIFNGQVVID 554

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432161|ref|XP_002274934.1| PREDICTED: squamosa promoter-binding-like protein 1-like [Vitis vinifera]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 328/584 (56%), Positives = 402/584 (68%), Gaps = 54/584 (9%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME +F G+A+H  G    DL+ +GK+TLEWDLN WKWDGDLF A++LN  P++   +QFF
Sbjct: 1   MEHKFGGKANHLRGPTVSDLKKLGKRTLEWDLNGWKWDGDLFRATQLNSVPSDCGSKQFF 60

Query: 61  PLA---VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGG 117
           P A   V    + SSS SDE+ +    GKRE+EKKRR VV+ED    E+  G L+LKLG 
Sbjct: 61  PPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVVVLEDEACDEL--GSLNLKLGA 118

Query: 118 NGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSK 177
             +P+ E E+      SGKKTK  G + +RAVCQVEDC ADL NAKDYHRRHKVC+MHSK
Sbjct: 119 QVYPIMEGEV-----KSGKKTKLIGATPNRAVCQVEDCRADLGNAKDYHRRHKVCDMHSK 173

Query: 178 ASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNN 237
           AS+ALVGNVMQRFCQQCSRFH+LQEFDEGKRSCRRRLAGHN+RRRKT+PD V NG S N+
Sbjct: 174 ASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLND 233

Query: 238 DQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQD 297
           ++   YLL+S+LRILSNMH++ SDQ  DQDLLSH+L+ LAS  G    R I GLLQ  QD
Sbjct: 234 ERGIRYLLMSVLRILSNMHANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQD 293

Query: 298 MLNERTSAGNSEVVQAFLANG-------------------QGCPTPFRQQLNATVSEMPQ 338
           +LN  TS G +E V   ++NG                   Q    P    L ATV EM +
Sbjct: 294 LLNAGTSVGTAEKVPDMVSNGLVPNKLLGSASRMADGSDLQASSRPIGPCLMATVPEMAE 353

Query: 339 QVSLPHDAR-----------------------GAEDQDGNV-AQIKMNNFDLNDVYIDSD 374
           +     DA+                         E+  G    +IK+NNFDLN+VY DS 
Sbjct: 354 KRVFTDDAQVGMLQNLSGTQPTNRFPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQ 413

Query: 375 DGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSR 433
           D  E+ ERS  PAN GT  +D    V+QDS +SSPPQTS NSDS SA+S S+SS +AQSR
Sbjct: 414 DCIENPERSYGPANPGTRPLDRALLVQQDSYKSSPPQTSANSDSTSARSLSTSSGEAQSR 473

Query: 434 TDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEEL 493
           TDRIVFKLFGK+P+DFPLV+R Q+LDWLSH+P+++ES+IRPGC+ILTIYLR  ++ WEEL
Sbjct: 474 TDRIVFKLFGKDPSDFPLVMRKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEEL 533

Query: 494 CCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFD 537
           CCDL  SLSRLLD+S DSFW +GWVY RVQ+++AFIY+G +  D
Sbjct: 534 CCDLGSSLSRLLDMSEDSFWRTGWVYTRVQNRLAFIYSGQVVLD 577

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|422779156|gb|AFX82677.1| squamosa promoter binding protein 5 [Vitis pseudoreticulata]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 326/584 (55%), Positives = 401/584 (68%), Gaps = 54/584 (9%)

Query: 1   METRFRGEAHHFYGMNSMDLRAVGKKTLEWDLNDWKWDGDLFIASKLNPAPNENIGRQFF 60
           ME +F G+A+H  G    DL+ VGK+T+EWDLN WKWDGDLF A++LN  P++   +QFF
Sbjct: 1   MEHKFGGKANHLRGPTVSDLKKVGKRTMEWDLNGWKWDGDLFRATQLNSVPSDCGSKQFF 60

Query: 61  PLA---VGNSSNSSSSCSDEVNLGIENGKREVEKKRRAVVVEDHNSYEVAAGGLSLKLGG 117
           P A   V    + SSS SDE+ +    GKRE+EKKRR VV+ED    E+  G L+LKLG 
Sbjct: 61  PPASEPVTVGLSISSSSSDEIIVDDGKGKRELEKKRRVVVIEDEACDEL--GSLNLKLGA 118

Query: 118 NGHPLSEREMGNWAGSSGKKTKFGGGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSK 177
             + + E E+      SGKKTK  G + +RAVCQVEDC ADL NAKDYHRRHKVC+MHSK
Sbjct: 119 QVYLIMEGEV-----KSGKKTKLIGATPNRAVCQVEDCRADLGNAKDYHRRHKVCDMHSK 173

Query: 178 ASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDAVANGSSPNN 237
           AS+ALVGNVMQRFCQQCSRFH+LQEFDEGKRSCRRRLAGHN+RRRKT+PD V NG S N+
Sbjct: 174 ASKALVGNVMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHPDTVVNGGSLND 233

Query: 238 DQTSGYLLISLLRILSNMHSSRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQEHQD 297
           ++   YLL+S+LRILSNMH++ SDQ  DQDLLSH+L+ LAS  G    R I GLLQ  QD
Sbjct: 234 ERGIRYLLMSVLRILSNMHANSSDQTKDQDLLSHILKNLASSGGTINERDIPGLLQGSQD 293

Query: 298 MLNERTSAGNSEVVQAFLANG-------------------QGCPTPFRQQLNATVSEMPQ 338
           +LN  TS G +E V   ++NG                   Q    P    L ATV E+ +
Sbjct: 294 LLNAGTSVGTAEKVPDMVSNGLVPNKLLGSASRMADGSDLQASSRPIGPCLMATVPEVAE 353

Query: 339 --------QVSLPHDARGA---------------EDQDGNV-AQIKMNNFDLNDVYIDSD 374
                   QV + H+  G                E+  G    +IK+NNFDLN+VY DS 
Sbjct: 354 KRVFTDDAQVGMLHNLSGTQPTNRIPTGDGVPAMENMQGTTHGRIKLNNFDLNNVYNDSQ 413

Query: 375 DGTEDVERSPVPANLGTSSIDCPSWVRQDSQQSSPPQTSGNSDSASAQSPSSSS-DAQSR 433
           D  E+ ERS  PAN GT  +D    V+Q S +SSPPQTS NSDS SA+S S+SS +AQSR
Sbjct: 414 DCIENPERSYGPANPGTRPLDRALLVQQVSYKSSPPQTSANSDSTSARSLSTSSGEAQSR 473

Query: 434 TDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEEL 493
           TDRIVFKLFGK+P+DFPLV+  Q+LDWLSH+P+++ES+IRPGC+ILTIYLR  ++ WEEL
Sbjct: 474 TDRIVFKLFGKDPSDFPLVMGKQVLDWLSHTPTEIESFIRPGCIILTIYLRLGKSTWEEL 533

Query: 494 CCDLTFSLSRLLDLSNDSFWTSGWVYARVQHQIAFIYNGLLAFD 537
           CCDL  SLSRLLD+S DSFW +GWVY RVQ+++AFIY+G +  D
Sbjct: 534 CCDLGSSLSRLLDMSEDSFWRTGWVYTRVQNRLAFIYSGQVVLD 577

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	592
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.643	0.411	0.559	1.3e-122
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.462	0.311	0.434	9.7e-67
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.175	0.105	0.650	2.8e-53
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.157	0.089	0.726	1.5e-52
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.136	0.243	0.691	1.3e-27
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.133	0.603	0.683	1.7e-27
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.143	0.469	0.658	2.2e-27
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.143	0.488	0.651	6.2e-27
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.126	0.185	0.706	1e-26
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.148	0.210	0.629	1.2e-26

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1092 (389.5 bits), Expect = 1.3e-122, Sum P(2) = 1.3e-122
 Identities = 220/393 (55%), Positives = 269/393 (68%)

Query:   147 RAVC-QVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDE 205
             RA+C QV++CGADLS  KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFDE
Sbjct:   123 RAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDE 182

Query:   206 GKRSCRRRLAGHNKRRRKTNPDAVANGSSPNNDQTSGYLLISLLRILSNMHSSRSDQRTD 265
             GKRSCRRRLAGHNKRRRK NPD + NG+S ++DQTS Y+LI+LL+ILSN+HS++SDQ  D
Sbjct:   183 GKRSCRRRLAGHNKRRRKANPDTIGNGTSMSDDQTSNYMLITLLKILSNIHSNQSDQTGD 242

Query:   266 QDLLSHLLRGLASPAGENGGRGISGLLQEHQDMLNERTSAGNSEVVQAFLANGQGCPTPF 325
             QDLLSHLL+ L S AGE+ GR + GLLQ     L    + GN   + A L+  Q    P 
Sbjct:   243 QDLLSHLLKSLVSQAGEHIGRNLVGLLQGGGG-LQASQNIGN---LSALLSLEQA---PR 295

Query:   326 RQQLNATVSEMPQQVSLPHDARGAEDQDGNVAQIKMNNFDLNDVYIDSDDGTEDVERS-P 384
                 + +VSE P Q    + A+     D +  Q+K+N+FDLND+YIDSDD T D+ERS P
Sbjct:   296 EDIKHHSVSETPWQEVYANSAQERVAPDRSEKQVKVNDFDLNDIYIDSDD-TTDIERSSP 354

Query:   385 VPANLGTSSIDCPSWVRXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXRTDRIVFKLFGK 444
              P N  TSS+D     R             +                 RTDRIVFKLFGK
Sbjct:   355 PPTNPATSSLDYHQDSRQSSPPQTSRR--NSDSASDQSPSSSSGDAQSRTDRIVFKLFGK 412

Query:   445 EPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELCCDLTFXXXXX 504
             EPNDFP+ LR QIL+WL+H+P+DMESYIRPGC++LTIYLRQ EA+WEELCCDL+F     
Sbjct:   413 EPNDFPVALRGQILNWLAHTPTDMESYIRPGCIVLTIYLRQDEASWEELCCDLSFSLRRL 472

Query:   505 XXXXXXXFWTSGWVYARVQHQIAFIYNGLLAFD 537
                     WT GW+Y RVQ+Q+AF +NG +  D
Sbjct:   473 LDLSDDPLWTDGWLYLRVQNQLAFAFNGQVVLD 505

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 9.7e-67, Sum P(2) = 9.7e-67
 Identities = 125/288 (43%), Positives = 159/288 (55%)

Query:   260 SDQRTDQDLLSHLLRGLASPAGENGGRGI-SGLLQEHQDMLNERTSAGNSEVVQAFLANG 318
             SD  +   LL  LL+ L++     G + + S LL+       E+       +V+  L  G
Sbjct:   191 SDDHSSNYLLITLLKILSNMHNHTGDQDLMSHLLKSLVSHAGEQLG---KNLVELLLQGG 247

Query:   319 --QGCPTPFRQQLNATVSEMPQQVSLPHDAR--GAEDQDGNVAQIKMNNFDLNDVYIDSD 374
               QG        L   + + PQ+      AR  G   ++ +  Q+KMN+FDLND+YIDSD
Sbjct:   248 GSQGSLNIGNSALLG-IEQAPQEELKQFSARQDGTATENRSEKQVKMNDFDLNDIYIDSD 306

Query:   375 DGTEDVERSPVPANLGTSSIDCPSWVRXXXXXXXXXXXXGNXXXXXXXXXXXXXXXXXRT 434
             D   DVERSP P N  TSS+D PSW+              +                 RT
Sbjct:   307 D--TDVERSPPPTNPATSSLDYPSWIHQSSPPQTSR---NSDSASDQSPSSSSEDAQMRT 361

Query:   435 DRIVFKLFGKEPNDFPLVLRAQILDWLSHSPSDMESYIRPGCVILTIYLRQAEAAWEELC 494
              RIVFKLFGKEPN+FP+VLR QILDWLSHSP+DMESYIRPGC++LTIYLRQAE AWEEL 
Sbjct:   362 GRIVFKLFGKEPNEFPIVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELS 421

Query:   495 CDLTFXXXXXXXXXXXXFWTSGWVYARVQHQIAFIYNGLLAFDFYICL 542
              DL F             WT+GW+Y RVQ+Q+AF+YNG +  D  + L
Sbjct:   422 DDLGFSLGKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLSL 469

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.8e-53, Sum P(3) = 2.8e-53
 Identities = 69/106 (65%), Positives = 84/106 (79%)

Query:   150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS 209
             CQV++C  DLS AKDYHRRHKVCE+HSKA++ALVG  MQRFCQQCSRFH+L EFDEGKRS
Sbjct:    82 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 141

Query:   210 CRRRLAGHNKRRRKTNPDAVANG--SSPNNDQTSGYLLISLLRILS 253
             CRRRL GHN+RRRKT PDA+ +   +  N D TS    + ++ +L+
Sbjct:   142 CRRRLDGHNRRRRKTQPDAITSQVVALENRDNTSNNTNMDVMALLT 187

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 1.5e-52, Sum P(3) = 1.5e-52
 Identities = 69/95 (72%), Positives = 81/95 (85%)

Query:   149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
             +CQV++C  DLS+AKDYHRRHKVCE+HSKA++ALVG  MQRFCQQCSRFH+L EFDEGKR
Sbjct:   119 MCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKR 178

Query:   209 SCRRRLAGHNKRRRKTN-PDAVANGSS-PNNDQTS 241
             SCRRRLAGHN+RRRKT  P+ VA+G   P N  T+
Sbjct:   179 SCRRRLAGHNRRRRKTTQPEEVASGVVVPGNHDTT 213

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 56/81 (69%), Positives = 63/81 (77%)

Query:   150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS 209
             CQ E C ADLS+AK YHRRHKVCE HSKAS  +   + QRFCQQCSRFH+L EFD GKRS
Sbjct:   188 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRS 247

Query:   210 CRRRLAGHNKRRRKTNPDAVA 230
             CR+RLA HN+RRRK +  A A
Sbjct:   248 CRKRLADHNRRRRKCHQSASA 268

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 54/79 (68%), Positives = 62/79 (78%)

Query:   149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
             VCQVE C AD+S AK YH+RHKVC+ H+KA    +  + QRFCQQCSRFH L EFDE KR
Sbjct:    53 VCQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKR 112

Query:   209 SCRRRLAGHNKRRRKTNPD 227
             SCRRRLAGHN+RRRK+  D
Sbjct:   113 SCRRRLAGHNERRRKSTTD 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 56/85 (65%), Positives = 67/85 (78%)

Query:   149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
             +CQV+ C  +L+ AK Y+RRH+VCE+H+KAS A V  V QRFCQQCSRFH L EFDE KR
Sbjct:    62 LCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAKR 121

Query:   209 SCRRRLAGHNKRRRKTNPDAVANGS 233
             SCRRRLAGHN+RRRK + D+   GS
Sbjct:   122 SCRRRLAGHNERRRKISGDSFGEGS 146

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 6.2e-27, P = 6.2e-27
 Identities = 56/86 (65%), Positives = 68/86 (79%)

Query:   149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
             +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQEFDE KR
Sbjct:    53 LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 112

Query:   209 SCRRRLAGHNKRRRKTNPDAV-ANGS 233
             SCRRRLAGHN+RRRK++ ++    GS
Sbjct:   113 SCRRRLAGHNERRRKSSGESTYGEGS 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 53/75 (70%), Positives = 62/75 (82%)

Query:   149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
             +CQV  C  DLS++KDYH+RH+VCE HSK S  +V  + QRFCQQCSRFH L EFD+GKR
Sbjct:   123 LCQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKR 182

Query:   209 SCRRRLAGHNKRRRK 223
             SCRRRLAGHN+RRRK
Sbjct:   183 SCRRRLAGHNERRRK 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 56/89 (62%), Positives = 65/89 (73%)

Query:   150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRS 209
             CQVE C  DLS+AKDYHR+H++CE HSK  + +V  V +RFCQQCSRFH L EFDE KRS
Sbjct:   169 CQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRS 228

Query:   210 CRRRLAGHNKRRRKTNPDAVANGSSPNND 238
             CRRRL+ HN RRRK NP    +G  P  D
Sbjct:   229 CRRRLSDHNARRRKPNPGRTYDGK-PQVD 256

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019711001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (977 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	592
pfam03110	79	pfam03110, SBP, SBP domain	1e-52

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  174 bits (442), Expect = 1e-52
 Identities = 64/79 (81%), Positives = 68/79 (86%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
            CQVE CGADLSNAKDYHRRHKVCE+HSKA   LV  + QRFCQQCSRFH+L EFDEGKR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 209 SCRRRLAGHNKRRRKTNPD 227
           SCRRRLAGHN+RRRK  PD
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	592
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=9.8e-38  Score=264.18  Aligned_cols=78  Identities=65%  Similarity=1.133  Sum_probs=63.2

Q ss_pred             ceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhhcCCCC
Q 007712          149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP  226 (592)
Q Consensus       149 ~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RRRk~~~  226 (592)
                      +||||||++||+.+|.||+||||||.|+|||+|+++|.++||||||+|||+|+||||+|||||++|++||+||||.++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	592
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		2e-26
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		4e-24
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		2e-20

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/75 (72%), Positives = 62/75 (82%)
Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQEFDE KR
Sbjct: 10  LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 69
Query: 209 SCRRRLAGHNKRRRK 223
           SCRRRLAGHN+RRRK
Sbjct: 70  SCRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/55 (81%), Positives = 51/55 (92%)
Query: 150 CQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
           CQV++CGADLS  KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 97.1 bits (240), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 56/80 (70%)
Query: 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGK 207
           A CQV DC AD+S  K YH+RH+VC   + AS  ++    +R+CQQC +FH+L +FDEGK
Sbjct: 4   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 63
Query: 208 RSCRRRLAGHNKRRRKTNPD 227
           RSCRR+L  HN RR++   D
Sbjct: 64  RSCRRKLERHNNRRKRKPVD 83

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	592
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	2e-40
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	9e-38
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	7e-33
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  141 bits (356), Expect = 2e-40
 Identities = 57/91 (62%), Positives = 70/91 (76%)

Query: 142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQ 201
            GSS   +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQ
Sbjct: 3   SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQ 62

Query: 202 EFDEGKRSCRRRLAGHNKRRRKTNPDAVANG 232
           EFDE KRSCRRRLAGHN+RRRK++ ++  + 
Sbjct: 63  EFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  133 bits (336), Expect = 9e-38
 Identities = 43/87 (49%), Positives = 57/87 (65%)

Query: 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDE 205
           S A CQV DC AD+S  K YH+RH+VC   + AS  ++    +R+CQQC +FH+L +FDE
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 206 GKRSCRRRLAGHNKRRRKTNPDAVANG 232
           GKRSCRR+L  HN RR++   D     
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDKGGVA 88

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  119 bits (299), Expect = 7e-33
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
           S   CQV++CGADLS  KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 2   SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 76/469 (16%), Positives = 143/469 (30%), Gaps = 148/469 (31%)

Query: 206 GKRSCRRRLAGH---NKRRRKTNPDAV-----ANGSSPNNDQTSGYLLISLLRILSNMHS 257
           GK +    +A     + + +      +      N +SP        +L  LL  +    +
Sbjct: 162 GK-TW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWT 214

Query: 258 SRSDQRTDQDLLSHLLRGLASPAGENGGRGISGLLQE--HQDML----NERTSAGNSEVV 311
           SRSD  ++  L  H ++             +  LL+   +++ L    N +    N++  
Sbjct: 215 SRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCLLVLLNVQ----NAKAW 259

Query: 312 QAFLANGQGCP----TPFRQQLNATVSEMPQQVSLPHDARGAEDQDGN--VAQ-IKMNNF 364
            AF      C     T F+Q  +   +     +SL H +      +    + + +     
Sbjct: 260 NAF---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 365 DLNDVYIDSDDGTEDVERSPVPANL-GTSSIDCPS----WVRQDSQQSSPPQTSGNSDSA 419
           DL           E +  +P   ++   S  D  +    W   +  +     T+    S 
Sbjct: 317 DLPR---------EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSL 363

Query: 420 SAQSPSSSSDAQSRTDRIVFKLFGKEPNDFPL---VLRAQILDWLSHSPSD----MESYI 472
           +   P+          R +F      P    +   +L   ++ W     SD    +    
Sbjct: 364 NVLEPA--------EYRKMFDRLSVFPPSAHIPTILL--SLI-WFDVIKSDVMVVVNKLH 412

Query: 473 RPGCV----------ILTIYLR-----QAEAAWEELCCD-----LTFSLSRLLDLSNDSF 512
           +   V          I +IYL      + E A      D      TF    L+    D +
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 513 WTS-------------------------GWVYARVQHQ------IAFIYNGLLAFDFYIC 541
           + S                          ++  +++H          I N L    FY  
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-- 530

Query: 542 LSKFCIFDLTNNSNLENHLQVNA---FLPAISMLQVRLFWTRH-CLLEV 586
              + I D    ++ +    VNA   FLP I    +    +++  LL +
Sbjct: 531 -KPY-ICD----NDPKYERLVNAILDFLPKIEENLIC---SKYTDLLRI 570

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	592
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.96

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=2.8e-41  Score=292.27  Aligned_cols=90  Identities=63%  Similarity=1.075  Sum_probs=80.5

Q ss_pred             CCCCCCCceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhh
Q 007712          142 GGSSSRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRR  221 (592)
Q Consensus       142 ~~~~~~~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RR  221 (592)
                      +++++.++||||||++||+.+|.||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||
T Consensus         3 ~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RR   82 (94)
T 1ul4_A            3 SGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERR   82 (94)
T ss_dssp             -----CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCC
T ss_pred             CCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHh
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCccC
Q 007712          222 RKTNPDAVAN  231 (592)
Q Consensus       222 Rk~~~~~~~~  231 (592)
                      ||++++....
T Consensus        83 Rk~~~~~~~~   92 (94)
T 1ul4_A           83 RKSSGESGPS   92 (94)
T ss_dssp             CSCCCC----
T ss_pred             ccCCCCcCCC
Confidence            9999987643

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=5.2e-40  Score=281.57  Aligned_cols=83  Identities=52%  Similarity=0.962  Sum_probs=79.4

Q ss_pred             CCCceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhhcCCC
Q 007712          146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTN  225 (592)
Q Consensus       146 ~~~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RRRk~~  225 (592)
                      +.++||||||++||+.+|+||+||||||.|+||++|+++|+++||||||+|||+|+|||++|||||++|++||+||||++
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCC
Q 007712          226 PDA  228 (592)
Q Consensus       226 ~~~  228 (592)
                      ++.
T Consensus        82 ~~~   84 (88)
T 1ul5_A           82 VDK   84 (88)
T ss_dssp             CSS
T ss_pred             ccC
Confidence            765

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.96  E-value=1.3e-30  Score=209.84  Aligned_cols=59  Identities=78%  Similarity=1.372  Sum_probs=57.1

Q ss_pred             CCCceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhccccccccc
Q 007712          146 SRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD  204 (592)
Q Consensus       146 ~~~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD  204 (592)
                      +.++|||+||++||+.+|+|||||||||.|+||++|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            46899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	592
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	2e-45
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	2e-45
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	4e-33

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  153 bits (387), Expect = 2e-45
 Identities = 54/79 (68%), Positives = 65/79 (82%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKR 208
           +CQV+ C AD+  AK YHRRHKVCE+H+KAS   +  + QRFCQQCSRFH LQEFDE KR
Sbjct: 3   LCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKR 62

Query: 209 SCRRRLAGHNKRRRKTNPD 227
           SCRRRLAGHN+RRRK++ +
Sbjct: 63  SCRRRLAGHNERRRKSSGE 81

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  153 bits (388), Expect = 2e-45
 Identities = 42/81 (51%), Positives = 56/81 (69%)

Query: 148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGK 207
           A CQV DC AD+S  K YH+RH+VC   + AS  ++    +R+CQQC +FH+L +FDEGK
Sbjct: 2   ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGK 61

Query: 208 RSCRRRLAGHNKRRRKTNPDA 228
           RSCRR+L  HN RR++   D 
Sbjct: 62  RSCRRKLERHNNRRKRKPVDK 82

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  118 bits (297), Expect = 4e-33
 Identities = 45/56 (80%), Positives = 51/56 (91%)

Query: 149 VCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD 204
            CQV++CGADLS  KDYHRRHKVCE+HSKA+ ALVG +MQRFCQQCSRFHVL+EFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	592
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.95

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-40  Score=280.15  Aligned_cols=83  Identities=51%  Similarity=0.950  Sum_probs=81.0

Q ss_pred             CceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhhcCCCCC
Q 007712          148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD  227 (592)
Q Consensus       148 ~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RRRk~~~~  227 (592)
                      ++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             Ccc
Q 007712          228 AVA  230 (592)
Q Consensus       228 ~~~  230 (592)
                      +.+
T Consensus        82 ~~g   84 (86)
T d1ul5a_          82 KGG   84 (86)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            765

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=5.1e-40  Score=275.79  Aligned_cols=80  Identities=68%  Similarity=1.174  Sum_probs=78.2

Q ss_pred             CceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhcccccccccCccchHHHHHhhHhhhhcCCCCC
Q 007712          148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPD  227 (592)
Q Consensus       148 ~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFDg~kRSCR~rL~~Hn~RRRk~~~~  227 (592)
                      .+||||||++||+.+|+||+||||||.|+||++|+|+|+++||||||+|||+|+|||++|||||+||++||+||||++++
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=8.3e-31  Score=207.82  Aligned_cols=57  Identities=79%  Similarity=1.411  Sum_probs=55.8

Q ss_pred             CceeecCCchhhcccchhhhcccchhhhcccceeeeCCchhhhhHhhhccccccccc
Q 007712          148 AVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFD  204 (592)
Q Consensus       148 ~~CQV~GC~adLs~~k~Y~rRhrVCe~H~kA~~V~v~G~~qRFCQQCsrFH~L~eFD  204 (592)
                      .+||||||++||+.+|+|||||||||.|+|||+|+|+|++|||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            379999999999999999999999999999999999999999999999999999998