Citrus Sinensis ID: 007725

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-
Protein Sequence
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccHHccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATEnmknmrpedlKCAAEqlthtppeeVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNlqgihsseGRTLLLACSLNsmscylktkqYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDlsnahevspddgtIADVLRDAKEILMkedghhgprgllIEEITEEvgavssgshrssgteylarekadpsksehsangrgsstkpeflpdlkddpesIRSFQNFisnanpdsfaalsggkageispDMFKAVSIMINKMSPEELQRMIQIASsfqgenphangdsietnfngfrpgstppnmrpdmlKTASDVMSKMSSEDLQKMFEMESTLKNKvagqastavdpkgissdpgprlsesrersavngnnvvgqpssggffpnsrtnqqssfspstADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGvqgvkktknwllgkpGMILAICMLILAVILHRLGFIGG
Flexible Loop (DISEMBL)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSdlsnahevspddgtIADVLRDAKEILMkedghhgprgLLIEEITEEVgavssgshrssgTEYLarekadpsksehsangrgsstkpeflpDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVagqastavdpkgissdpgprlSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQrgvqgvkktknwllgKPGMILAICMLILAVILHRLGFIGG
Low Complexity Region (SEG)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Disordered region (IsUnstruct)
*********************************************************************************************AQMNYEFNAAKMLK**GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE********************DVLR****I************LLI*******************************************************************************************AVSIM********************************************************************************************************************************************************************************************************NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFI**
Disordered Region (DISOPRED)
*****************************************************DL*CAA******PPEEVAEIGEKLANA**********************AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD****************************************************************************************************************************************************************************************************************************************************************************************************************************DLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Disordered Region (DISEMBL)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV*************************************KPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK******************************VNGNNVVGQPSSGGFFPNSR*************LQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Disordered Region (DISPRO)
*****MDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT*******************************************FLPDLKDD*ESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLK*********************************************************************************************************************SSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	591	2.2.26 [Sep-21-2011]
B7ZWR6	554	Outer envelope protein 61	yes	no	0.934	0.996	0.595	0.0
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.189	0.200	0.364	4e-14
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.213	0.217	0.325	5e-13
A4K2V0	309	Mitochondrial import rece	yes	no	0.243	0.466	0.320	1e-12
Q9LDC0	365	Peptidyl-prolyl cis-trans	no	no	0.225	0.364	0.333	1e-12
Q15785	309	Mitochondrial import rece	yes	no	0.243	0.466	0.314	2e-12
Q38931	551	Peptidyl-prolyl cis-trans	no	no	0.211	0.226	0.335	3e-12
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	no	0.192	0.313	0.353	2e-11
Q5RAP0	929	Protein unc-45 homolog A	no	no	0.196	0.124	0.336	1e-10
Q3KRD5	309	Mitochondrial import rece	yes	no	0.164	0.313	0.372	2e-10

>sp|B7ZWR6|OEP61_ARATH Outer envelope protein 61, chloroplastic OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/591 (59%), Positives = 430/591 (72%), Gaps = 39/591 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct: 1   MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct: 61  QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct: 241 IEDITEE-NNVTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P A   +  +  NGF P        PDMLK ASD+M KMS E+ ++MF M S+L  K   
Sbjct: 347 PFA--PTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSL--KANA 395

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
            AST+    G +    PR  ES   S  +  N    P S GF P       S  S   AD
Sbjct: 396 PASTSY---GNAEASEPR--ESLGASGSSSGNSFVAPRS-GFEP-------SIPSAPPAD 442

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           LQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+MSEQFG+KLS+ED  K QQ M+SLS + 
Sbjct: 443 LQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDA 502

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
           L++MM WADR Q G++  KK K WL GK G+I AI ML+LA++LHRLG+IG
Sbjct: 503 LEKMMRWADRAQTGMEKAKKAKKWLFGKGGLIFAILMLVLAMVLHRLGYIG 553

Chaperone receptor mediating Hsp70-dependent protein targeting to chloroplasts. Interacts specifically with some chloroplast precursors, but not with mitochondrial precursors. Able to select precursors for delivery to the chloroplast translocase independently of Hsp70.
Arabidopsis thaliana (taxid: 3702)

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 70/118 (59%), Gaps = 6/118 (5%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSC 155
           AA   K++GN L+  G+++ A ++Y  A K ++   S       + + L + C+LN+ +C
Sbjct: 400 AAGTKKEEGNALFKSGKYARASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAAC 459

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            LK K Y +  K+ ++VL  D++NVKALYRR QAY  +  LE A  D+  A E+ P++
Sbjct: 460 KLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPEN 517

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)

Query: 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSM 153
             AA   K++GN L+  G+++ A ++Y    K ++   +       + + L +AC+LN  
Sbjct: 407 IEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKIACNLNDA 466

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +C LK K Y E  K+ ++VL  D++NVKA+YRR  AY +   L+ A  D+  A E+ PD+
Sbjct: 467 ACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKALEIDPDN 526

Query: 214 GTIADVLRDAKE 225
             +    +  KE
Sbjct: 527 KEVKIEYKKLKE 538

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|A4K2V0|TOM34_PONAB Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 71  AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 128
           +E  +++A +  +E    + R+ +  + E   AK+LK++GNEL  +G    A++KY   L
Sbjct: 163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KAKVLKEEGNELVKKGNHKKAIEKYSESL 220

Query: 129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188
              NL+    S           N   CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct: 221 LCSNLESATYS-----------NRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query: 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
           A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct: 270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Pongo abelii (taxid: 9601)

>sp|Q9LDC0|FKB42_ARATH Peptidyl-prolyl cis-trans isomerase FKBP42 OS=Arabidopsis thaliana GN=FKBP42 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 8/141 (5%)

Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQGIHSSE 140
           +AR D  +     AA   K  GN L+ E +   A+Q+Y +A           L G +   
Sbjct: 165 KARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDM 224

Query: 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200
              +   C LN  +C +K K+YDE I   + VL  + KN KAL+RRG+A  ++G+++ A 
Sbjct: 225 ALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSAR 284

Query: 201 SDLSNAHEVSPDDGTIADVLR 221
            D   A + +PDD  I   LR
Sbjct: 285 DDFRKAQKYAPDDKAIRRELR 305

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Modulates the uptake of MRP substrates into the vacuole; reduces metolachlor-GS (MOC-GS) and enhances 17-beta-estradiol 17-(beta-D-glucuronide) (E(2)17betaG) uptake. Regulates cell elongation and orientation. Functions as a positive regulator of PGP1-mediated auxin transport. Confers drug modulation of PGP1 efflux activity as interaction with NPA or flavonol quercetin prevents its physical and functional interaction with PGP1. Required for the proper localization of auxin-related ABCB transporters. Plays a role in brassinosteroid (BR) signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q15785|TOM34_HUMAN Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 71  AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 128
           +E  +++A +  +E    + R+ +  + E   A++LK++GNEL  +G    A++KY   L
Sbjct: 163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KARVLKEEGNELVKKGNHKKAIEKYSESL 220

Query: 129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188
              NL+    S           N   CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct: 221 LCSNLESATYS-----------NRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query: 189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
           A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct: 270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Homo sapiens (taxid: 9606)

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%)

Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGR 142
           R   D     +  AA   K++GN  +  G++S A ++Y  A K ++   S       + +
Sbjct: 386 RESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLASKRYEKAVKFIEYDTSFSEEEKKQAK 445

Query: 143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202
            L +AC+LN  +C LK K Y +  K+ ++VL  ++ NVKALYRR QAY ++  L+ A  D
Sbjct: 446 ALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAEFD 505

Query: 203 LSNAHEVSPDD 213
           +  A E+ P++
Sbjct: 506 VKKALEIDPNN 516

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 16/130 (12%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--------GIHSSEGR--TLLLACSLNS 152
           A  LK  GN  + +G  +NA +KYL A + L              EG+   + + C LN 
Sbjct: 208 ATHLKDIGNTYFKKGDHANAAKKYLKAIRYLNEKPAFDENDPKELEGKFAAIKIPCYLNR 267

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNV------KALYRRGQAYKDIGRLEEAVSDLSNA 206
             C LK  +Y EC+KV + VL YD+K +      KA +RRG A  +    E A+ D   A
Sbjct: 268 SMCALKLGEYSECVKVTTTVLEYDSKYLKPTDITKAYFRRGSAKMNTRDFEGAIEDFEKA 327

Query: 207 HEVSPDDGTI 216
           HE  P+D  I
Sbjct: 328 HEKDPEDAGI 337

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           ++ + L+K+GNEL+  G +  AL  Y  A     G+ ++     +L    N  +CYLK +
Sbjct: 4   SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACYLKLE 57

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + L
Sbjct: 58  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 117

Query: 221 RD 222
           R+
Sbjct: 118 RN 119

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q3KRD5|TOM34_RAT Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 21/118 (17%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS------CY 156
           A++LK++GNEL  +G    A++KY            SE    LL  SL S +      C+
Sbjct: 193 ARVLKEEGNELVKKGNHKKAIEKY------------SES---LLFSSLESATYSNRALCH 237

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           L  KQY E  K  +E L  D KNVKA YRR QAYK +   + +++D+S+  ++ P +G
Sbjct: 238 LVLKQYKEAEKDCTEALKLDGKNVKAFYRRAQAYKALKDYKSSLADISSLLQIEPRNG 295

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
225436083	590	PREDICTED: outer envelope protein 61, ch	0.983	0.984	0.644	0.0
224102985	588	predicted protein [Populus trichocarpa]	0.988	0.993	0.681	0.0
296084010	584	unnamed protein product [Vitis vinifera]	0.979	0.991	0.645	0.0
255549607	595	fk506 binding protein, putative [Ricinus	0.996	0.989	0.652	0.0
224132120	559	predicted protein [Populus trichocarpa]	0.937	0.991	0.632	0.0
356517663	581	PREDICTED: uncharacterized protein LOC10	0.978	0.994	0.611	0.0
356544786	590	PREDICTED: uncharacterized protein LOC10	0.979	0.981	0.606	0.0
449448844	569	PREDICTED: outer envelope protein 61, ch	0.961	0.998	0.591	0.0
26452527	554	unknown protein [Arabidopsis thaliana]	0.934	0.996	0.595	0.0
30688239	554	tetratricopeptide repeat domain-containi	0.934	0.996	0.595	0.0

>gi|225436083|ref|XP_002272729.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Vitis vinifera]

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/591 (64%), Positives = 469/591 (79%), Gaps = 10/591 (1%)

Query: 4   GMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLT 63
            MMDPE+IRLAQEQMNRMSP +FA+IQ+QMMANPELMR+A+E M NMRPEDL+ AAEQL 
Sbjct: 5   AMMDPELIRLAQEQMNRMSPTEFAKIQEQMMANPELMRMASETMMNMRPEDLRNAAEQLK 64

Query: 64  HTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL 123
           +  PEE+AEIGEK+AN+SPEEIA MRAR D+Q+ Y+ NAA+MLKKQGNEL+++G+F+ A 
Sbjct: 65  YARPEEMAEIGEKMANSSPEEIAAMRARADSQITYQINAAQMLKKQGNELHNKGKFNEAS 124

Query: 124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL 183
           QKYLLAKKNL GI +S+GRTLLLACSLN MSCYLKTKQYDECI+ G+EVLAYD KNVKAL
Sbjct: 125 QKYLLAKKNLTGIPASKGRTLLLACSLNLMSCYLKTKQYDECIQEGTEVLAYDPKNVKAL 184

Query: 184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE 243
           YRRGQAYK++G+L +AVSDL+ A+ VSP+D TI +VLRD KE L+K+ G    R L+IEE
Sbjct: 185 YRRGQAYKELGQLNDAVSDLNKAYGVSPEDETIGEVLRDVKEKLIKQGGEPAQRKLVIEE 244

Query: 244 ITEEVGAVSSGSHRSSGTEYLA---REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           ITEE  AVS+G+ + S  E      +E     KS+   N    +T  E+L  LKDDPE+I
Sbjct: 245 ITEE--AVSTGNGKCSAMENCVTQPQENGACRKSQSGTNSEDLTTNSEYLQTLKDDPEAI 302

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           RSFQNF+SNA+PD+ AALS GK+GE SPDMFK  S MI+KMSPEELQRM+Q+ASSFQ EN
Sbjct: 303 RSFQNFMSNADPDTLAALSAGKSGEYSPDMFKTASNMISKMSPEELQRMVQMASSFQREN 362

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
            +    S+++NF  FRPGS PPN+ P+MLKTA+D+M+ MS+E+ QKM EM S+L+ + + 
Sbjct: 363 EYFPKGSLDSNFGSFRPGSVPPNLTPEMLKTATDMMNNMSTEERQKMLEMASSLRARDSV 422

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
               +++  G+SS    +  E+RE SAVNGNN +G+ SS G F N R   QSSF PSTA 
Sbjct: 423 STPASLNTDGLSS----KFPETRENSAVNGNNDMGESSSHGSFSNLRGGSQSSFQPSTAG 478

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           +Q QMRNQM DPAM+QMF+SM+KNMSPEMM NM EQFG+KLSRED EK QQ +SS++  +
Sbjct: 479 MQEQMRNQMKDPAMRQMFTSMIKNMSPEMMTNMGEQFGVKLSREDAEKAQQALSSITPEN 538

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
           LDRMM WAD +Q+G +  +K KNWLLGKPGMILAICMLILA+ILHRLG+IG
Sbjct: 539 LDRMMRWADGIQKGAERARKAKNWLLGKPGMILAICMLILAIILHRLGYIG 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102985|ref|XP_002312880.1| predicted protein [Populus trichocarpa] gi|222849288|gb|EEE86835.1| predicted protein [Populus trichocarpa]

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/593 (68%), Positives = 479/593 (80%), Gaps = 9/593 (1%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDPE+I++AQEQM+RM+P DFARIQQQ+M+NPEL+++A+E M+NMRPEDLK AAE
Sbjct: 1   MFNGMMDPELIKIAQEQMSRMTPADFARIQQQVMSNPELVKMASEGMRNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ NASPEEIA M AR DAQ  YE NAA+MLKKQGNEL+S+G+F 
Sbjct: 61  QLKHTRPEEMAEIGEKMINASPEEIAAMHARADAQATYEMNAAQMLKKQGNELHSQGKFK 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A QKYLLAK+NL+GI SS+GRTLLLACSLN MSCYLKTKQYDECIK GSEVL YDAKN 
Sbjct: 121 DASQKYLLAKQNLKGIPSSKGRTLLLACSLNLMSCYLKTKQYDECIKEGSEVLGYDAKNA 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+++G+LE AVSDL  AHEVSPDD TIAD+LR+A+E L +E G+H PRG++
Sbjct: 181 KALYRRGQAYRELGQLEVAVSDLRKAHEVSPDDETIADILRNAEERLAQEGGYHAPRGVI 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IEEITEE   VS     SS     ARE  D SKS   A    S++ PE L  LKDDPE++
Sbjct: 241 IEEITEEAETVSENLKSSS-----ARESVDTSKSGREARSGSSTSNPEPLEALKDDPEAM 295

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           RSFQNFISNANP++ AALSG KAGE+SP+MFK  S MI KM PEELQ+M+Q+ASSFQGEN
Sbjct: 296 RSFQNFISNANPETLAALSGAKAGEVSPEMFKTASNMIGKMPPEELQKMLQMASSFQGEN 355

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLK-NKVA 419
           P   G S ++ FNGFRPG+ PPN+ PDMLKTASD+MSKM SE+LQKMFEM S+L+ N +A
Sbjct: 356 PLTAGSS-DSGFNGFRPGAVPPNVTPDMLKTASDMMSKMPSEELQKMFEMASSLRGNGLA 414

Query: 420 GQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQ-QSSFSPST 478
             A+ A++ +G S     + +E++E  AVNGNN + + SS G F +S  N   SSF  ST
Sbjct: 415 PAAAAALNTEGPSLSARLKPTETQEYFAVNGNNGISETSSSGDFLSSSRNAPPSSFPAST 474

Query: 479 ADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSL 537
           +D+Q QMRNQM DPAM+QMF+SM+KN+SPEMMANMSEQFGIKLS+ED  K QQ MSS S 
Sbjct: 475 SDMQEQMRNQMKDPAMRQMFTSMMKNLSPEMMANMSEQFGIKLSQEDAAKAQQAMSSFSP 534

Query: 538 NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
            DLD+MM WADR+QRG +G KK KNWLLG+PGMILAICMLILAVIL  LGFIG
Sbjct: 535 EDLDKMMRWADRIQRGAEGAKKAKNWLLGRPGMILAICMLILAVILRWLGFIG 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084010|emb|CBI24398.3| unnamed protein product [Vitis vinifera]

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/589 (64%), Positives = 468/589 (79%), Gaps = 10/589 (1%)

Query: 6   MDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHT 65
           MDPE+IRLAQEQMNRMSP +FA+IQ+QMMANPELMR+A+E M NMRPEDL+ AAEQL + 
Sbjct: 1   MDPELIRLAQEQMNRMSPTEFAKIQEQMMANPELMRMASETMMNMRPEDLRNAAEQLKYA 60

Query: 66  PPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK 125
            PEE+AEIGEK+AN+SPEEIA MRAR D+Q+ Y+ NAA+MLKKQGNEL+++G+F+ A QK
Sbjct: 61  RPEEMAEIGEKMANSSPEEIAAMRARADSQITYQINAAQMLKKQGNELHNKGKFNEASQK 120

Query: 126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR 185
           YLLAKKNL GI +S+GRTLLLACSLN MSCYLKTKQYDECI+ G+EVLAYD KNVKALYR
Sbjct: 121 YLLAKKNLTGIPASKGRTLLLACSLNLMSCYLKTKQYDECIQEGTEVLAYDPKNVKALYR 180

Query: 186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEIT 245
           RGQAYK++G+L +AVSDL+ A+ VSP+D TI +VLRD KE L+K+ G    R L+IEEIT
Sbjct: 181 RGQAYKELGQLNDAVSDLNKAYGVSPEDETIGEVLRDVKEKLIKQGGEPAQRKLVIEEIT 240

Query: 246 EEVGAVSSGSHRSSGTEYLA---REKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS 302
           EE  AVS+G+ + S  E      +E     KS+   N    +T  E+L  LKDDPE+IRS
Sbjct: 241 EE--AVSTGNGKCSAMENCVTQPQENGACRKSQSGTNSEDLTTNSEYLQTLKDDPEAIRS 298

Query: 303 FQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPH 362
           FQNF+SNA+PD+ AALS GK+GE SPDMFK  S MI+KMSPEELQRM+Q+ASSFQ EN +
Sbjct: 299 FQNFMSNADPDTLAALSAGKSGEYSPDMFKTASNMISKMSPEELQRMVQMASSFQRENEY 358

Query: 363 ANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQA 422
               S+++NF  FRPGS PPN+ P+MLKTA+D+M+ MS+E+ QKM EM S+L+ + +   
Sbjct: 359 FPKGSLDSNFGSFRPGSVPPNLTPEMLKTATDMMNNMSTEERQKMLEMASSLRARDSVST 418

Query: 423 STAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ 482
             +++  G+SS    +  E+RE SAVNGNN +G+ SS G F N R   QSSF PSTA +Q
Sbjct: 419 PASLNTDGLSS----KFPETRENSAVNGNNDMGESSSHGSFSNLRGGSQSSFQPSTAGMQ 474

Query: 483 -QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLD 541
            QMRNQM DPAM+QMF+SM+KNMSPEMM NM EQFG+KLSRED EK QQ +SS++  +LD
Sbjct: 475 EQMRNQMKDPAMRQMFTSMIKNMSPEMMTNMGEQFGVKLSREDAEKAQQALSSITPENLD 534

Query: 542 RMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
           RMM WAD +Q+G +  +K KNWLLGKPGMILAICMLILA+ILHRLG+IG
Sbjct: 535 RMMRWADGIQKGAERARKAKNWLLGKPGMILAICMLILAIILHRLGYIG 583

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549607|ref|XP_002515855.1| fk506 binding protein, putative [Ricinus communis] gi|223545010|gb|EEF46524.1| fk506 binding protein, putative [Ricinus communis]

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/595 (65%), Positives = 473/595 (79%), Gaps = 6/595 (1%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDPE+I++AQEQM+RMSP +FA+IQQQMMANPELM++A+E MKNMRPEDL+ AAE
Sbjct: 1   MFNGMMDPELIKIAQEQMSRMSPAEFAKIQQQMMANPELMKMASEGMKNMRPEDLRQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE +AEIG+K+ANASPEEIA+M AR+DAQ+ YE NAA+MLKKQGNEL+++GRF 
Sbjct: 61  QLKHTRPEVMAEIGDKMANASPEEIASMHARVDAQITYELNAAQMLKKQGNELHNQGRFK 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +ALQKYLLAKKNL+GI SS+GR+LLLACSLN MSCYLKT+QYDECIK GSEVL YDAKNV
Sbjct: 121 DALQKYLLAKKNLKGIPSSQGRSLLLACSLNLMSCYLKTRQYDECIKEGSEVLGYDAKNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAYK++G LE+AVSDLS AHEVSPDD TI+DVLR+AKE +  E G+H   GL+
Sbjct: 181 KALYRRGQAYKELGHLEDAVSDLSKAHEVSPDDETISDVLREAKERMANEGGNHRQSGLV 240

Query: 241 IEEITEEVGAVSS---GSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDP 297
           IEE+T+E    SS   GS R +      RE  D    +   NG G +   E L  LKDDP
Sbjct: 241 IEELTKEDDVASSQNLGSSRETSV-LQPRESVDARNMKSGTNGSGLTMNSESLQALKDDP 299

Query: 298 ESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQ 357
           E+IR+FQNFISNA+P++ +A+SG KAGE+SPDMFK  S MI+KMSP+ELQ+M+Q+ASSF+
Sbjct: 300 EAIRTFQNFISNADPETLSAVSGAKAGELSPDMFKTASNMISKMSPQELQKMLQMASSFE 359

Query: 358 GENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK 417
           G N  A   S +++FN FRPGS PPN+ PDMLK A+D++SKM  E+LQKMFEM S+L+  
Sbjct: 360 GGNQFAASSSSDSSFNSFRPGSVPPNVTPDMLKVATDMVSKMPPEELQKMFEMASSLQGT 419

Query: 418 VAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQ-PSSGGFFPNSRTNQQSSFSP 476
                + A+    ++ D G +L+  RE  AVN +N+ G+  SS  FF ++R   Q SF  
Sbjct: 420 DTLPVAGALKTNALNLDNGSKLTGQRENCAVNRSNMNGESSSSNDFFSSTRNASQPSFPS 479

Query: 477 STADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSL 535
           STAD+Q Q+RNQM DPAM+QMF+SM+KNMSPEMMANMSEQFG+KLS ED  K QQ MSSL
Sbjct: 480 STADMQEQVRNQMKDPAMRQMFTSMMKNMSPEMMANMSEQFGLKLSMEDAAKAQQAMSSL 539

Query: 536 SLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
           S  DLDRMM WAD++QRG +G KK KNWLLG+ GMILAICMLILA+ILH LG+IG
Sbjct: 540 SPEDLDRMMRWADKIQRGAEGAKKAKNWLLGRSGMILAICMLILAMILHWLGYIG 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132120|ref|XP_002328190.1| predicted protein [Populus trichocarpa] gi|222837705|gb|EEE76070.1| predicted protein [Populus trichocarpa]

 Score =  748 bits (1932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/594 (63%), Positives = 453/594 (76%), Gaps = 40/594 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDPE+I++AQEQM+RM+P DFARIQQQ+M+NPEL+R+A+E+MKNM+P+DLK AAE
Sbjct: 1   MFNGMMDPELIKIAQEQMSRMTPADFARIQQQVMSNPELVRMASESMKNMKPDDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ NASPEEIA MRAR D Q  YE NAA+MLKKQGNEL+S+G+F+
Sbjct: 61  QLKHTHPEEMAEIGEKMMNASPEEIAAMRARADVQATYEINAAQMLKKQGNELHSQGKFN 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +ALQKYLLAK+NL+GI SS+GRTL LACSLN MSCYLKTKQY+ECIK GSEVL YDA NV
Sbjct: 121 DALQKYLLAKQNLKGITSSKGRTLWLACSLNLMSCYLKTKQYNECIKEGSEVLGYDANNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+++G+LE+AVSDL  AHEVSPD+ TIAD+LR+A+E L +E GHH PRG+ 
Sbjct: 181 KALYRRGQAYRELGQLEDAVSDLRKAHEVSPDEETIADILRNAEETLAREGGHHAPRGI- 239

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLA---REKADPSKSEHSANGRGSSTKPEFLPDLKDDP 297
                             + TEY     RE AD SKS        S+T  E L  LKDDP
Sbjct: 240 ------------------TSTEYQVKQPRESADISKSGKGGRNGSSATNSEPLEALKDDP 281

Query: 298 ESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQ 357
           E++RSFQNFISNA+P++ AAL+G KAGE+SPDM KA S MI KMSPEELQRM+Q+ASSFQ
Sbjct: 282 EAMRSFQNFISNADPETLAALNGAKAGEVSPDMVKAASNMIGKMSPEELQRMLQMASSFQ 341

Query: 358 GENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNK 417
           G  P   G S +++FNGF+ G  PPN+ PDML+TASD M+KMS E+LQKMFEM ++L+  
Sbjct: 342 GATPFTAGGSSDSSFNGFKSGVVPPNVTPDMLRTASDTMNKMSPEELQKMFEMATSLR-- 399

Query: 418 VAGQASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPS 477
             G  S       +++D          RS++  +             N+     SSF  S
Sbjct: 400 --GNGSVPAVASALNTD----------RSSLGASETSSSRDFFSSSRNAPP---SSFPAS 444

Query: 478 TADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLS 536
           T+D+Q QMRNQM DPAM+QMF+SM+KNMSPEMMANMSEQFGIKLS+ED  K QQ M+SLS
Sbjct: 445 TSDMQEQMRNQMKDPAMQQMFTSMMKNMSPEMMANMSEQFGIKLSQEDAAKAQQAMASLS 504

Query: 537 LNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
             DLD+MM WADR+QRG +G KK KNWLLG+PGMILAICMLILA+ILHRLGFIG
Sbjct: 505 PEDLDKMMRWADRIQRGAEGAKKAKNWLLGRPGMILAICMLILAIILHRLGFIG 558

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517663|ref|XP_003527506.1| PREDICTED: uncharacterized protein LOC100800315 [Glycine max]

 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/594 (61%), Positives = 454/594 (76%), Gaps = 16/594 (2%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDP+++R+AQEQM+RMSP + ARIQQQMM+NPELMR+A+E+MKNM  ED K AAE
Sbjct: 1   MFNGMMDPDLMRIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSSEDFKLAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ANASPEE+A MR+R+DAQ+ Y+ +AA+MLKKQGN+L+++GR++
Sbjct: 61  QLKHTRPEEMAEIGEKMANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYN 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +AL+KY+LAK+N++ + S + R LLLACSLN MSCYLKT+QY+EC+K GSEVLAYDAKN+
Sbjct: 121 DALKKYILAKENIKEVPSFQSRKLLLACSLNLMSCYLKTRQYNECVKEGSEVLAYDAKNL 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAYK++G L++AVSDLS A EVSPDD TIA++LRDAKE L  + G H P  L+
Sbjct: 181 KALYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTIAELLRDAKEKLAMDGGEHAPGRLV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IEEITE+   V SGS     T    ++  D SKS  +AN     T  + L  LK DPE++
Sbjct: 241 IEEITED---VPSGSSSLEQTVVQPKKSGDSSKSYSTANNGNPKTNADSLDALKKDPEAV 297

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           RSFQNFISN +PD  A+L+ G+  ++SPDM K  S M++KMSPEELQRM+ +ASSFQG+N
Sbjct: 298 RSFQNFISNTDPDMLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQRMLDMASSFQGDN 357

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P   G S +++FN   PGS PPN+ PDM K ASD++SKM +++L++MFEM S+LK K + 
Sbjct: 358 PFFRGGSPDSSFN---PGSMPPNVTPDMFKAASDMISKMPADELKRMFEMASSLKGKEST 414

Query: 421 QASTAVD--PKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPST 478
             + AVD   + +S    P        S+ NG    G+ SS   F N R   QS+F  S+
Sbjct: 415 PLAAAVDENERNVSRSNLP-------SSSTNGTTAFGESSSHNVFSNMRNASQSNFPSSS 467

Query: 479 ADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSL 537
            DLQ QMRNQM DPAM++MFSSMVKNMSPEMMANM EQFG+KLS  +  K  Q MSSLS 
Sbjct: 468 TDLQEQMRNQMKDPAMRKMFSSMVKNMSPEMMANMGEQFGVKLSPGEAAKAHQAMSSLSP 527

Query: 538 NDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG 591
             LD+MMLWADR+QRGV+  +KTKNWLLGKPGMI AI MLILAVILHRLGFIGG
Sbjct: 528 ESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAIFMLILAVILHRLGFIGG 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544786|ref|XP_003540828.1| PREDICTED: uncharacterized protein LOC100793234 [Glycine max]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/602 (60%), Positives = 456/602 (75%), Gaps = 23/602 (3%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNGMMDP+++++AQEQM+RMSP + ARIQQQMM+NPELMR+A+E+MKNM  ED K AAE
Sbjct: 1   MFNGMMDPDLMKIAQEQMSRMSPAELARIQQQMMSNPELMRMASESMKNMSAEDFKLAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PEE+AEIGEK+ANASPEE+A MR+R+DAQ+ Y+ +AA+MLKKQGN+L+++GR++
Sbjct: 61  QLKHTRPEEMAEIGEKVANASPEEVAAMRSRVDAQIKYQLSAAEMLKKQGNDLHNQGRYN 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +AL+KY+LAK+N++ + S + R LLLACSLN MSCYLKT QY+ECIK GSEVLAYDAKN+
Sbjct: 121 DALKKYMLAKENIKEVPSFQSRKLLLACSLNLMSCYLKTSQYNECIKEGSEVLAYDAKNL 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR--- 237
           KALYRRGQAYK++G L++AVSDLS A EVSPDD TI ++LRD KE L  E G H PR   
Sbjct: 181 KALYRRGQAYKELGLLKDAVSDLSMALEVSPDDDTITELLRDTKEKLAMEGGEHAPRSIF 240

Query: 238 -----GLLIEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPD 292
                G++ EEIT EV  V SGS        L ++  D SKS  +AN     TK + L  
Sbjct: 241 GIMHLGIVTEEIT-EVEDVPSGSSLKQSVVQL-KKSGDSSKSYSTANNGIPKTKTDSLDA 298

Query: 293 LKDDPESIRSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQI 352
           LK DPE++RSFQNFISN +P + A+L+ G+  ++SPDM K  S M++KMSPEELQRM+ +
Sbjct: 299 LKKDPEAVRSFQNFISNTDPATLASLNAGQFKDVSPDMIKTTSDMVSKMSPEELQRMLDM 358

Query: 353 ASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMES 412
           ASSFQG+NP   G S +++FN   PGS PPN+ PDM K ASD++SKM ++DL++MFEM S
Sbjct: 359 ASSFQGDNPIFRGGSPDSSFN---PGSMPPNVTPDMFKAASDMISKMPADDLKRMFEMAS 415

Query: 413 TLKNKVAGQASTAVD--PKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQ 470
           +LK K +   + AVD   + +S    P        S+ NG    G+ SS   F N R   
Sbjct: 416 SLKGKESTPLAAAVDENERNVSRSNLP-------SSSTNGTTAFGESSSHNVFSNMRNAS 468

Query: 471 QSSFSPSTADLQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQ 529
           QS+F  S+A+LQ QMRNQM DPAM++MF+SMVKNMSPEMMANM EQFG+KLS E+  K Q
Sbjct: 469 QSNFPSSSANLQEQMRNQMKDPAMRKMFTSMVKNMSPEMMANMGEQFGVKLSPEEAAKAQ 528

Query: 530 QTMSSLSLNDLDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFI 589
           Q MSSLS   LD+MMLWADR+QRGV+  +KTKNWLLGKPGMI AI MLILAVILHRLGFI
Sbjct: 529 QAMSSLSPESLDKMMLWADRIQRGVESARKTKNWLLGKPGMIFAILMLILAVILHRLGFI 588

Query: 590 GG 591
           GG
Sbjct: 589 GG 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448844|ref|XP_004142175.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Cucumis sativus] gi|449503433|ref|XP_004162000.1| PREDICTED: outer envelope protein 61, chloroplastic-like [Cucumis sativus]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/588 (59%), Positives = 434/588 (73%), Gaps = 20/588 (3%)

Query: 5   MMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTH 64
           MMDPE++RLAQEQM+RMSP DFA+IQQQMMANPELM++A+E+MKNMRP+D K AAEQL H
Sbjct: 1   MMDPELMRLAQEQMSRMSPADFAKIQQQMMANPELMKMASESMKNMRPDDFKYAAEQLKH 60

Query: 65  TPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124
           T PE++A+IGEK+ANASPEEIATMR R+DAQ NYE NAA+MLK QGN+L+S+G+F++A +
Sbjct: 61  TRPEDMAKIGEKMANASPEEIATMRTRVDAQANYELNAAEMLKAQGNKLHSQGKFNDASE 120

Query: 125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184
           KYLLAK NL+GI SS+GRTLLLACSLN MSCYLKTKQY +CI+ GSEVLAYD++N KALY
Sbjct: 121 KYLLAKNNLKGISSSKGRTLLLACSLNLMSCYLKTKQYHDCIREGSEVLAYDSRNAKALY 180

Query: 185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEI 244
           RRGQAYK++ + ++AVSDLS AHEVSPDD TIADVL DAK+ L ++ G + P+G++IEEI
Sbjct: 181 RRGQAYKELCQFQDAVSDLSKAHEVSPDDETIADVLSDAKKKLNEQGGGNVPKGVVIEEI 240

Query: 245 TEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRSFQ 304
            EE   +S+ S  S   E +   K         A+    S   E L  L+DDPE+IRSFQ
Sbjct: 241 VEEDNPISTNSSVSKPPEVIDNSKI--------ADAYKKSINSESLQGLRDDPEAIRSFQ 292

Query: 305 NFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHAN 364
            F+SNA+PD+ AA++ GK+G ISPDM    S MI+KMSP ELQ M+++ASSFQ  NP   
Sbjct: 293 RFVSNADPDTLAAMNFGKSGGISPDMVATASNMISKMSPSELQDMLKLASSFQEANP-LK 351

Query: 365 GDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQAST 424
           GDS+  N +         NM P+ML +AS +MS M  EDLQ+MFE  S+LK   +   + 
Sbjct: 352 GDSLGPNLDS-------ANMTPEMLSSASRIMSSMPPEDLQRMFETASSLKRNESASGNG 404

Query: 425 AVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTADLQ-Q 483
            V P    SD G +  ES++ S           SS        ++  S+   S+ D+Q Q
Sbjct: 405 NVPP---DSDTGSKSFESQQSSISGSRTTRNTSSSDALSNLRSSSSNSTIPTSSTDMQEQ 461

Query: 484 MRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRM 543
           MR+QM +PAM+QMF+SM+KNMSPEMMANMSEQFG+KLS ED  K Q+ +SS S  DLD+M
Sbjct: 462 MRSQMKNPAMQQMFTSMIKNMSPEMMANMSEQFGLKLSPEDAAKAQEAISSFSPEDLDKM 521

Query: 544 MLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIGG 591
           M WAD++QRGV+G KK KNWLLG+PGMILAICMLILAVILH  G IGG
Sbjct: 522 MRWADKIQRGVEGGKKAKNWLLGRPGMILAICMLILAVILHWFGIIGG 569

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26452527|dbj|BAC43348.1| unknown protein [Arabidopsis thaliana]

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/591 (59%), Positives = 430/591 (72%), Gaps = 39/591 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct: 1   MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct: 61  QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct: 241 IEDITEEKN-VTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P A   +  +  NGF P        PDMLK ASD+M KMS E+ ++MF M S+L  K   
Sbjct: 347 PFA--PTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSL--KANA 395

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
            AST+    G +    PR  ES   S  +  N    P S GF P       S  S   AD
Sbjct: 396 PASTSY---GNAEASEPR--ESLGASGSSSGNSFVAPRS-GFEP-------SIPSAPPAD 442

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           LQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+MSEQFG+KLS+ED  K QQ M+SLS + 
Sbjct: 443 LQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDA 502

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
           L++MM WADR Q G++  KK K WL GK G+I AI ML+LA++LHRLG+IG
Sbjct: 503 LEKMMRWADRAQTGMEKAKKAKKWLFGKGGLIFAILMLVLAMVLHRLGYIG 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688239|ref|NP_680187.2| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|357580467|sp|B7ZWR6.1|OEP61_ARATH RecName: Full=Outer envelope protein 61, chloroplastic; AltName: Full=Tetratricopeptide repeat domain-containing protein 7 gi|219291100|gb|ACL13985.1| At5g21990 [Arabidopsis thaliana] gi|332005581|gb|AED92964.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/591 (59%), Positives = 430/591 (72%), Gaps = 39/591 (6%)

Query: 1   MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
           MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct: 1   MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query: 61  QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct: 61  QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query: 121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
           +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct: 121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query: 181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
           KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct: 181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query: 241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
           IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct: 241 IEDITEE-NNVTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query: 301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
           R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct: 287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query: 361 PHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAG 420
           P A   +  +  NGF P        PDMLK ASD+M KMS E+ ++MF M S+L  K   
Sbjct: 347 PFA--PTAPSTENGFTP-------TPDMLKLASDMMGKMSPEERERMFNMASSL--KANA 395

Query: 421 QASTAVDPKGISSDPGPRLSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPSTAD 480
            AST+    G +    PR  ES   S  +  N    P S GF P       S  S   AD
Sbjct: 396 PASTSY---GNAEASEPR--ESLGASGSSSGNSFVAPRS-GFEP-------SIPSAPPAD 442

Query: 481 LQ-QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLND 539
           LQ QMRNQM DPAM+QMF+SM+KNM+PEMMA+MSEQFG+KLS+ED  K QQ M+SLS + 
Sbjct: 443 LQEQMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDA 502

Query: 540 LDRMMLWADRVQRGVQGVKKTKNWLLGKPGMILAICMLILAVILHRLGFIG 590
           L++MM WADR Q G++  KK K WL GK G+I AI ML+LA++LHRLG+IG
Sbjct: 503 LEKMMRWADRAQTGMEKAKKAKKWLFGKGGLIFAILMLVLAMVLHRLGYIG 553

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	591
TAIR|locus:504956437	554	TPR7 "AT5G21990" [Arabidopsis	0.834	0.889	0.508	2.5e-120
UNIPROTKB|Q7XIM1	547	OJ1714_H10.131 "Putative uncha	0.813	0.879	0.393	8.2e-83
UNIPROTKB|Q7XRB1	392	OSJNBa0006B20.12 "cDNA clone:0	0.561	0.846	0.418	3.4e-61
UNIPROTKB|A8I9E1	580	TPR1 "Predicted chloroplast-ta	0.734	0.748	0.266	2.2e-31
TAIR|locus:2037650	164	TPR6 "AT1G58450" [Arabidopsis	0.213	0.768	0.335	1.5e-13
UNIPROTKB|Q2QXS0	370	LOC_Os12g05090 "Os12g0145500 p	0.270	0.432	0.323	7.5e-13
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.285	0.291	0.314	8.4e-13
UNIPROTKB|Q15785	309	TOMM34 "Mitochondrial import r	0.243	0.466	0.320	2.1e-12
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.225	0.227	0.35	3e-12
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.225	0.230	0.323	4.9e-12

TAIR|locus:504956437 TPR7 "AT5G21990" [Arabidopsis thaliana (taxid:3702)]

 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 267/525 (50%), Positives = 343/525 (65%)

Query:     1 MFNGMMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAE 60
             MFNG+MDPEMIRLAQ+QM+RM+P DFARIQQQMM+NP+LM +ATE+MKNMRPEDLK AAE
Sbjct:     1 MFNGLMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAE 60

Query:    61 QLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
             QL HT PE++AEI EK+A ASPE+IA MRA  DAQ  Y+ NAA+MLKKQGNEL+S G FS
Sbjct:    61 QLKHTRPEDMAEISEKMAKASPEDIAAMRAHADAQFTYQINAAQMLKKQGNELHSRGNFS 120

Query:   121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV 180
             +A +KYL AK NL+ I SS+G  +LLACSLN MSCYLKT Q++ECIK GSEVL YDA+NV
Sbjct:   121 DAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARNV 180

Query:   181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL 240
             KALYRRGQAY+D+G  E+AVSDLS AHEVSP+D TIADVLRD KE L  E      RG++
Sbjct:   181 KALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLAVEGPGKASRGVV 240

Query:   241 IEEITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESI 300
             IE+ITEE   V+SG ++             PSK E + + +G  T  + L  L+D+PE+I
Sbjct:   241 IEDITEE-NNVTSGENKK------------PSK-EANGHAQGVKTDVDGLQALRDNPEAI 286

Query:   301 RSFQNFISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGEN 360
             R+FQNFIS  +PD+ AALSGGKAG++SPDMFK  S MI KMSPEE+Q+M+Q ASSF+G+N
Sbjct:   287 RTFQNFISKTDPDTLAALSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346

Query:   361 PHANGDSIETNFNGFRPGSTPPNMRPDML-KTASDVMSKM--SSEDLQKMFEMESTLKNK 417
             P A   +  +  NGF P      +  DM+ K + +   +M   +  L+      ++  N 
Sbjct:   347 PFA--PTAPSTENGFTPTPDMLKLASDMMGKMSPEERERMFNMASSLKANAPASTSYGNA 404

Query:   418 VAGQASTAVDPKGISSDPG---PRLS-ESRERSAVNGN------NVVGQPSSGGFFPNSR 467
              A +   ++   G SS      PR   E    SA   +      N +  P+    F +  
Sbjct:   405 EASEPRESLGASGSSSGNSFVAPRSGFEPSIPSAPPADLQEQMRNQMKDPAMRQMFTSMI 464

Query:   468 TNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANM 512
              N       S ++   M+    D A  Q     + ++SP+ +  M
Sbjct:   465 KNMNPEMMASMSEQFGMKLSQEDAAKAQQ---AMASLSPDALEKM 506

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IBA

GO:0005528 "FK506 binding" evidence=IBA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005829 "cytosol" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046967 "cytosol to ER transport" evidence=IGI

UNIPROTKB|Q7XIM1 OJ1714_H10.131 "Putative uncharacterized protein OJ1714_H10.131" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 207/526 (39%), Positives = 293/526 (55%)

Query:     5 MMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTH 64
             MMDPEM+RLAQEQM++MSP D AR+QQQ+++NP L+++A+E+MKNMR +D + AA+Q+  
Sbjct:     1 MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ 60

Query:    65 TPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ 124
             T P+E+ ++ EKLANA+PEE+A M+ + + QM+Y  + AKMLK+QGNEL+   ++S A  
Sbjct:    61 TRPDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAA 120

Query:   125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY 184
             KY LAK NL+ I S    +L L C+LN M+CYLKT+ ++ECI  GSEVL YD+ NVKA Y
Sbjct:   121 KYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSNVKAYY 180

Query:   185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED-GHHGPRGLLIEE 243
             RRGQAYK++G LE AV DLS AHE+SPDD TIA VLRDA+E L  E  G   P+G++IEE
Sbjct:   181 RRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKLAVEGKGAKHPKGVVIEE 240

Query:   244 ITEEVGAVSSGSHRSSGTEYLAREKADPSKSEHS------ANGRGS----STKPEFLPDL 293
             + ++    SS S RSS   Y   +  +   S  S      ANG          PE +   
Sbjct:   241 VVDDASEPSS-SQRSSSPGYTVSQPPEEGNSRPSGSSSIDANGLSKLGMQGMSPELVKTA 299

Query:   294 KD-----DPESIRSFQNFISNANPDSFAALS-GGKAGEISPDMFKAVSIMINKMSPEELQ 347
              D      PE ++      S+ +  S +  + G    E+SP+MFK  S MI  MSP+ELQ
Sbjct:   300 SDMIGTMKPEELQKMFEAASSLHGTSSSPPNLGPNMPEMSPEMFKMASDMIGNMSPDELQ 359

Query:   348 RMIQIASSFQGENPHANGDSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKM 407
              M+  AS+  G  P A+    E         +T    +  +     D     SS+++  M
Sbjct:   360 NMLNFASNMGG--PSASPLRPENKLQSSSRATTSSTSQRSV-----DNSQPSSSQNV--M 410

Query:   408 FEMESTLKNKVAGQASTAVDPKGISSDPG-PRLSESRERSAVNGNNVVGQPSSGGFFPNS 466
                   L N+  G+          SS PG P  ++ +E       N +  P+    + + 
Sbjct:   411 ENPHEILSNQRMGE----------SSSPGAPSTADMQETM----RNAMKDPAMRKMYASM 456

Query:   467 RTNQQSSFSPSTADLQQMRNQMNDPAMKQMFSSMVKNMSPEMMANM 512
               N       S ++   M+    D A  Q     + ++SPE +  M
Sbjct:   457 MKNISPEMMSSMSEQFGMKMTKEDAAKAQ---EALSSLSPEALDRM 499

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7XRB1 OSJNBa0006B20.12 "cDNA clone:002-172-D07, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 149/356 (41%), Positives = 215/356 (60%)

Query:     5 MMDPEMIRLAQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTH 64
             MMDPEM+R+AQEQM RM P   A +QQQ+M+NP L+R ATE +K + P+DL+ A EQ++ 
Sbjct:     1 MMDPEMMRVAQEQMRRMPPAALAAMQQQLMSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60

Query:    65 TPPEEVAEIGEKLANASPEEIA-TMR-ARIDAQMNYEFNA---AKMLKKQGNELYSEGRF 119
             T  EEV  +  +LA ASPEE+A TM+ A+ + Q    + A   A+ LK QGN L+   R 
Sbjct:    61 TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNALFRLARH 120

Query:   120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN 179
             ++A  KY LA  NL+ + SS  R+L   C +N M+C+LKT +  EC+++GSEVL  D  N
Sbjct:   121 ADAAAKYALAVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180

Query:   180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL 239
             VKA YRRGQAY+++GR+E AV+DL  AHE+SP++  IAD LRDA+E L    G   PRGL
Sbjct:   181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKL----G--APRGL 234

Query:   240 LIEEITEEVGAVSSGSHRSSGTEYLAREKADPSK-SEHSANGRGSSTKPEFLPDLKD--- 295
             +IEEI EE          + G+E L    A  S  S HS      S       ++ +   
Sbjct:   235 VIEEIVEE-------EEEAQGSEILPTSGATSSSTSGHSVPSPSPSPSAAAAAEMMNSMG 287

Query:   296 DPESIRSFQNFISNANPDSFAALSGGKAG-EISPDMFKAVSIMINKMSPEELQRMI 350
             DP   +   + +   +P++ + + G + G ++S D    +   + K+SPE L++++
Sbjct:   288 DPAMGKMVASVVQGMDPETVSII-GKQFGVDLSRDDAARLQDAMKKLSPENLEKVM 342

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8I9E1 TPR1 "Predicted chloroplast-targeted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 367 (134.2 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 129/484 (26%), Positives = 218/484 (45%)

Query:    20 RMSPDDFARIQQQMMAN--PELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL 77
             +M+P+   ++Q  MM N  P++M+ A   MK+M+P+D + A +Q+           G+ +
Sbjct:     2 KMTPEQMEQMQS-MMKNMPPDMMQQAMSQMKDMKPDDWERAKQQMAGMD-------GDTM 53

Query:    78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH 137
             A  + +    M  R      Y  NA+  LK +GN+L++ G F+ A +KY  AK N+  + 
Sbjct:    54 ARQAAQAQQQMAGRTQ----YVLNASNQLKAEGNQLHNRGAFAEAAEKYERAKTNVASMA 109

Query:   138 SSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE 197
               E   L  AC+LN  SCYL  KQ+ +C++  + VLA +  N+KALYRRGQAY   G   
Sbjct:   110 GKEAADLARACTLNLSSCYLNLKQFSKCLENCNSVLASEPSNLKALYRRGQAYMGTGSWL 169

Query:   198 EAVSDLSNA----HEVSPDDGT-IADVLRDAKEIL--MKEDGHHGPRGLLIEEITEEVGA 250
             +A SDL  A     E+ P     I D L++ K+ +  ++  G   P G      +  V A
Sbjct:   170 DASSDLERALKMAKEIDPSQAVPIRDKLQEVKDRISALRASGQLPPAGA-----STAVAA 224

Query:   251 VSSGSHRSSGTEYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS-----FQN 305
              ++ S    G   +  E+A       S +   +  +   +PD   D  ++R         
Sbjct:   225 ATAASSADDGDGVV--EEAQEMMKGMSDDQLRAMARQMGMPDAPLD--ALRGGLDADLMT 280

Query:   306 FISNANPDSFAALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIASSFQGENPHANG 365
              ++    +    L G  A   +P+  K ++ ++ K +P+  + M ++ S+    +P    
Sbjct:   281 KVAKVQAELPPELRGPDAAR-NPEAMKKMAEVMAK-NPDMAKTMGEVLSTI---DPSKLQ 335

Query:   366 DSIETNFNGFRPGSTPPNMRPDMLKTASDVMSKMSSEDLQKMFEMESTLKNKVAGQASTA 425
             +  +    G  PG    N+ P+M K A++   KMS  +LQ   +  + +    A   S+A
Sbjct:   336 EMAKQA--GLPPGM---NITPEMAKMAAESFQKMSPSELQAAMDTAAKMGPPPASLGSSA 390

Query:   426 VDPKGISSDPGPRLSESRERSAVNGNN--VVGQPSS--GGFFPNSRTNQQSSFSPST-AD 480
              D     +      S S   SA   ++    G P    GG  P +     +S  P   A+
Sbjct:   391 ADSSSARASSAAGASTSGRSSAAPASSSLAAGLPPMPPGGMDPRAAAEMMASMPPEQLAE 450

Query:   481 LQQM 484
             + +M
Sbjct:   451 MAKM 454

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2037650 TPR6 "AT1G58450" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 44/131 (33%), Positives = 71/131 (54%)

Query:    99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK-----NLQGIHSSEGRTLLLACSLNSM 153
             +  AA   K++GN LY   ++  A +KY  A +       +G    + + L ++C LN  
Sbjct:     6 KIEAANRKKEEGNLLYKTQKYERAAKKYNKAAECIENGKFEGGDEKQVKALRVSCFLNGA 65

Query:   154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +C LK K + E I + SEVL  + +NVKALYRR Q+Y ++G L  A  D++ A E  P++
Sbjct:    66 ACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEMDINRALEADPEN 125

Query:   214 GTIADVLRDAK 224
               +  + +  K
Sbjct:   126 REVKSLYKAMK 136

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

UNIPROTKB|Q2QXS0 LOC_Os12g05090 "Os12g0145500 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 198 (74.8 bits), Expect = 7.5e-13, P = 7.5e-13
 Identities = 55/170 (32%), Positives = 88/170 (51%)

Query:    64 HTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL 123
             + PP  +A++  ++     +++   +AR D  +     AA   K +GNE + E +F  A+
Sbjct:   149 NVPP--MADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAM 206

Query:   124 QKYLLAKKNLQGIHSSE--G--RTLLLA----CSLNSMSCYLKTKQYDECIKVGSEVLAY 175
             Q+Y +A   +      +  G  R + LA    C LN  +C +K K++DE I   + VL+ 
Sbjct:   207 QQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIVLSE 266

Query:   176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
             D  NVKAL+RRG+A  ++G+ E A  D   A + SP+D  I   LR   E
Sbjct:   267 DENNVKALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAE 316

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 202 (76.2 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 57/181 (31%), Positives = 93/181 (51%)

Query:    93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-SE-----GRTLLL 146
             D     +   A   K++GN L+  G++  A ++Y  A K ++   S SE      + L +
Sbjct:   396 DLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKV 455

Query:   147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
              C+LN+ +C LK K Y +  K+ ++VL  D++NVKALYRR QAY  +  LE A  D+  A
Sbjct:   456 TCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKA 515

Query:   207 HEVSPDDGTIADVLRDAKEILMKEDGHHGPR--GLLIEEITE---EVGAVSSGSHRSSGT 261
              E+ PD+  +    ++ KE  +KE      +    +  ++T+   E G   SG+    G+
Sbjct:   516 LEIDPDNRDVKLTYKNLKE-KVKEYNKKDAKFYSNMFAKMTKQPAEDGKAGSGAESKQGS 574

Query:   262 E 262
             E
Sbjct:   575 E 575

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q15785 TOMM34 "Mitochondrial import receptor subunit TOM34" [Homo sapiens (taxid:9606)]

 Score = 191 (72.3 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 51/159 (32%), Positives = 84/159 (52%)

Query:    71 AEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL--L 128
             +E  +++A +  +E    + R+ +  + E   A++LK++GNEL  +G    A++KY   L
Sbjct:   163 SENHKEMAKSKSKETTATKNRVPSAGDVE--KARVLKEEGNELVKKGNHKKAIEKYSESL 220

Query:   129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQ 188
                NL+    S  R L          CYL  KQY E +K  +E L  D KNVKA YRR Q
Sbjct:   221 LCSNLESATYSN-RAL----------CYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQ 269

Query:   189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
             A+K +   + + +D+SN  ++ P +G    + ++ K+ L
Sbjct:   270 AHKALKDYKSSFADISNLLQIEPRNGPAQKLRQEVKQNL 308

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0016021 "integral to membrane" evidence=TAS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 197 (74.4 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 49/140 (35%), Positives = 78/140 (55%)

Query:    93 DAQMNYE-FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLL 145
             D + N E   AA   K +GN  +  G+++ A ++Y  A K ++   S       + + L 
Sbjct:   400 DLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALK 459

Query:   146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 205
             ++C LN+ +C LK K+Y E  K+ ++VL  ++ NVKALYRR QAY ++  LE A  D+  
Sbjct:   460 VSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKK 519

Query:   206 AHEVSPDDGTIADVLRDAKE 225
             A E+ PD+  +  V +  KE
Sbjct:   520 ALEIDPDNRDVKMVYKTLKE 539

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 45/139 (32%), Positives = 72/139 (51%)

Query:    93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ--GIHSSE----GRTLLL 146
             D        AA   K++GN L+  G+++ A ++Y    K ++       E     + L +
Sbjct:   400 DMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSKDLKI 459

Query:   147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
             AC+LN  +C LK K Y E  K+ ++VL  D++NVKA+YRR  AY +   L+ A  D+  A
Sbjct:   460 ACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELDIKKA 519

Query:   207 HEVSPDDGTIADVLRDAKE 225
              E+ PD+  +    +  KE
Sbjct:   520 LEIDPDNKEVKIEYKKLKE 538

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B7ZWR6	OEP61_ARATH	No assigned EC number	0.5956	0.9340	0.9963	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX000173 hypothetical protein (588 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	591
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-05
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD 163
           + L   GN  Y  G +  AL+ Y  A +    +            +      Y K  +Y+
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALE----LDPDNADAYYNLAA-----AYYKLGKYE 51

Query: 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           E ++   + L  D  N KA Y  G AY  +G+ EEA+     A E+ P+
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 21/59 (35%), Positives = 29/59 (49%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            Y K   YDE ++   + L  D  N  A Y    AY  +G+ EEA+ D   A E+ PD+
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP 211
              K   YDE I+   + L  D  N +A Y    AY  +G   EEA+ DL  A E+ P
Sbjct: 12  ALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.4 bits (108), Expect = 2e-05
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 8/133 (6%)

Query: 98  YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157
                A+ L   G  L + GR+  AL+    A K      +     L L         YL
Sbjct: 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL--------LYL 213

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217
           K  +Y+E ++   + L  D  N +ALY       ++GR EEA+  L  A E+ PD   + 
Sbjct: 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLG 273

Query: 218 DVLRDAKEILMKE 230
             L       ++ 
Sbjct: 274 LALLLLLAEALEL 286

Length = 291

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 20/58 (34%), Positives = 25/58 (43%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            L+   YDE +      LA      +AL   G+A    GRL EA + L  A    PDD
Sbjct: 7   ALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            KALY  G AY  +G+ +EA+     A E++P++
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 39/178 (21%), Positives = 74/178 (41%), Gaps = 22/178 (12%)

Query: 30  QQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMR 89
           QQQ  + P++ +      K    E      E+ +  P     E     A+  PE   +  
Sbjct: 60  QQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEP----ADELPEIDESSV 115

Query: 90  ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLL 146
           A +  +   ++ A   LK++GN+ Y    F+ A++ Y   +  K +   ++ S       
Sbjct: 116 ANLSEEERKKYAAK--LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYS------- 164

Query: 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 204
               N  +C+     +++ ++  +  L  D    KAL RR  AY  +G+  +A+ DL+
Sbjct: 165 ----NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +ALY  G AY  +G  +EA+     A E+ P++
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +ALY  G AY  +G  EEA+     A E+ P++
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	591
KOG0553	304	consensus TPR repeat-containing protein [General f	99.84
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.62
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.58
KOG4234	271	consensus TPR repeat-containing protein [General f	99.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.51
PRK15359	144	type III secretion system chaperone protein SscB;	99.48
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.47
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.45
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.45
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.41
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.4
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	99.38
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.35
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.32
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.29
KOG0553	304	consensus TPR repeat-containing protein [General f	99.28
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.26
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.25
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.2
KOG1126	638	consensus DNA-binding cell division cycle control	99.2
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.2
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.2
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.19
PRK11189	296	lipoprotein NlpI; Provisional	99.16
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.14
PRK12370	553	invasion protein regulator; Provisional	99.13
PRK12370	553	invasion protein regulator; Provisional	99.12
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.08
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.08
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.07
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.05
KOG1126	638	consensus DNA-binding cell division cycle control	99.03
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.03
PRK15359	144	type III secretion system chaperone protein SscB;	99.03
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.02
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.02
KOG1125	579	consensus TPR repeat-containing protein [General f	98.99
PRK11189	296	lipoprotein NlpI; Provisional	98.98
KOG1125	579	consensus TPR repeat-containing protein [General f	98.95
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.93
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.91
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.9
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.9
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.89
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.89
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.85
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.85
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.83
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.82
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
PLN02789	320	farnesyltranstransferase	98.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.8
KOG2003	840	consensus TPR repeat-containing protein [General f	98.8
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.79
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.78
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.76
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.75
PLN02789	320	farnesyltranstransferase	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.74
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.71
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.69
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.69
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.68
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.67
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.64
PRK15331	165	chaperone protein SicA; Provisional	98.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.6
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.6
KOG1129	478	consensus TPR repeat-containing protein [General f	98.57
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.5
KOG4555	175	consensus TPR repeat-containing protein [Function	98.47
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.46
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.45
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.45
PF13371	73	TPR_9: Tetratricopeptide repeat	98.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.41
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.4
PRK10803	263	tol-pal system protein YbgF; Provisional	98.39
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.38
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.37
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.37
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.37
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.29
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.27
PRK14574	822	hmsH outer membrane protein; Provisional	98.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.23
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.22
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.21
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.2
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.2
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.2
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.2
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.19
PF13371	73	TPR_9: Tetratricopeptide repeat	98.19
KOG2076	895	consensus RNA polymerase III transcription factor	98.18
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.16
PF13512	142	TPR_18: Tetratricopeptide repeat	98.14
PRK14574	822	hmsH outer membrane protein; Provisional	98.14
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.13
PF12688	120	TPR_5: Tetratrico peptide repeat	98.12
KOG2076	895	consensus RNA polymerase III transcription factor	98.1
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.09
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.08
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.08
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.08
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.08
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.07
KOG1129	478	consensus TPR repeat-containing protein [General f	98.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.06
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.03
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.98
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.94
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.91
KOG1310	758	consensus WD40 repeat protein [General function pr	97.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.89
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.89
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.85
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.85
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.83
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.82
PRK11906	458	transcriptional regulator; Provisional	97.82
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.82
KOG4234	271	consensus TPR repeat-containing protein [General f	97.8
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.79
KOG2003	840	consensus TPR repeat-containing protein [General f	97.74
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.74
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.72
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.71
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.66
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.64
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.58
PF13431	34	TPR_17: Tetratricopeptide repeat	97.57
PRK10803	263	tol-pal system protein YbgF; Provisional	97.57
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.5
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.46
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.46
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.45
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.44
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.41
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.4
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.36
PRK11906	458	transcriptional regulator; Provisional	97.34
PRK15331	165	chaperone protein SicA; Provisional	97.34
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.33
PF13428	44	TPR_14: Tetratricopeptide repeat	97.29
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.27
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.26
PF12688	120	TPR_5: Tetratrico peptide repeat	97.26
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.18
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.14
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.09
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.01
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.98
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.94
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.94
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.88
PF13428	44	TPR_14: Tetratricopeptide repeat	96.87
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.83
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.77
KOG2471	696	consensus TPR repeat-containing protein [General f	96.75
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.71
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.67
KOG4555	175	consensus TPR repeat-containing protein [Function	96.66
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.59
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.54
PF13431	34	TPR_17: Tetratricopeptide repeat	96.51
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.48
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.48
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.41
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.38
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.37
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.3
PF13512	142	TPR_18: Tetratricopeptide repeat	96.28
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.24
PRK10941	269	hypothetical protein; Provisional	96.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.14
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	95.87
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.87
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.83
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	95.58
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.56
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.43
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.35
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.26
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.07
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.68
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.64
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.57
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.5
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.4
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.39
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.37
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.28
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	94.23
PRK04841	903	transcriptional regulator MalT; Provisional	94.23
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.22
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.19
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	94.15
KOG1586	288	consensus Protein required for fusion of vesicles	94.08
PLN03077	857	Protein ECB2; Provisional	93.85
KOG3364	149	consensus Membrane protein involved in organellar	93.49
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	93.46
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.35
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.07
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.6
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	92.43
PLN03218	1060	maturation of RBCL 1; Provisional	92.28
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.24
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	91.74
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	91.48
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	91.46
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	91.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	91.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	91.24
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.0
PRK04841	903	transcriptional regulator MalT; Provisional	90.88
COG4976	287	Predicted methyltransferase (contains TPR repeat)	90.87
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.75
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.75
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	90.72
PLN03077	857	Protein ECB2; Provisional	90.48
PLN03218	1060	maturation of RBCL 1; Provisional	90.31
PRK10941	269	hypothetical protein; Provisional	90.3
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.1
KOG2471	696	consensus TPR repeat-containing protein [General f	90.05
KOG1915	677	consensus Cell cycle control protein (crooked neck	90.03
COG2912	269	Uncharacterized conserved protein [Function unknow	89.94
KOG2796	366	consensus Uncharacterized conserved protein [Funct	89.85
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.11
KOG1941	518	consensus Acetylcholine receptor-associated protei	87.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.4
KOG2610	491	consensus Uncharacterized conserved protein [Funct	87.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.32
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	86.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	85.84
KOG3364	149	consensus Membrane protein involved in organellar	85.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	85.64
KOG1915	677	consensus Cell cycle control protein (crooked neck	83.91
COG2912	269	Uncharacterized conserved protein [Function unknow	83.25
smart00727	41	STI1 Heat shock chaperonin-binding motif.	82.16
PF11116	85	DUF2624: Protein of unknown function (DUF2624); In	81.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	80.35
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.05

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.3e-21  Score=196.69  Aligned_cols=122  Identities=28%  Similarity=0.367  Sum_probs=116.6

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....++.+|..||.+.+.++|.+|+.+|.+||+++|.++.         +|.||+.+|.++|.|+.||++|+.||.+||.
T Consensus        77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~  147 (304)
T KOG0553|consen   77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------YYCNRAAAYSKLGEYEDAVKDCESALSIDPH  147 (304)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence            4557889999999999999999999999999999999975         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +.++|.|+|.+|+.+|+|++|++.|++||+++|++...++.|..++.++.+
T Consensus       148 yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e  198 (304)
T KOG0553|consen  148 YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE  198 (304)
T ss_pred             HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999888853

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=6.6e-17  Score=168.86  Aligned_cols=134  Identities=37%  Similarity=0.542  Sum_probs=122.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeeccccceeeeccccchhhhhhccee
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A  172 (591)
                      ..+.+...+..||.||+.|+|..|+..|++|+...+.+..      .....++..|++|++.||+++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            5566788999999999999999999999999998775432      2355678889999999999999999999999999


Q ss_pred             eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      |+++|+|++++||+|.||..+++|+.|+.+|+++++++|.|..+...|..+..+++.+..
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998877654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.58  E-value=6.4e-16  Score=166.47  Aligned_cols=162  Identities=19%  Similarity=0.118  Sum_probs=146.1

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      +++-.+...|.++++..+.-..++.++||+|...+.|++|+.+|.+|+.+.|....         ++.|+|.+|+.+|..
T Consensus       232 Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~---------a~gNla~iYyeqG~l  302 (966)
T KOG4626|consen  232 GEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV---------AHGNLACIYYEQGLL  302 (966)
T ss_pred             chHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh---------hccceEEEEeccccH
Confidence            35566778889999999999999999999999999999999999999999998755         899999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                      +-||..|+++|+++|+.+.+|+|+|.++.+.|+..||+.+|.+||.+.|+++++..+|+.++...+..+.+..-|.+.+ 
T Consensus       303 dlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al-  381 (966)
T KOG4626|consen  303 DLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKAL-  381 (966)
T ss_pred             HHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999888877766666655 


Q ss_pred             HHHHhhhccccC
Q 007725          243 EITEEVGAVSSG  254 (591)
Q Consensus       243 e~~e~~~~~~~~  254 (591)
                      ++.++..++.+.
T Consensus       382 ~v~p~~aaa~nN  393 (966)
T KOG4626|consen  382 EVFPEFAAAHNN  393 (966)
T ss_pred             hhChhhhhhhhh
Confidence            566666555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.56  E-value=4e-16  Score=148.64  Aligned_cols=125  Identities=24%  Similarity=0.358  Sum_probs=114.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      +...+..++..||.+|+.|+|.+|...|.+||.++|..+.    +++..||.|||.|++++++++.||.+|+++|+|+|.
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt  166 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT  166 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence            4567889999999999999999999999999999988764    567789999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +.+++.||+.+|..+.+|++|+.+|++.++++|....+...+.++...+
T Consensus       167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i  215 (271)
T KOG4234|consen  167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKI  215 (271)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999999877777666654444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4.1e-15  Score=159.12  Aligned_cols=134  Identities=22%  Similarity=0.348  Sum_probs=124.9

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      .+.+..+.......+++.+...+..||.+|+.|+|..|+.+|++||..+|+++.         +|.||+.||.+++.|..
T Consensus       340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~---------lYsNRAac~~kL~~~~~  410 (539)
T KOG0548|consen  340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR---------LYSNRAACYLKLGEYPE  410 (539)
T ss_pred             HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH---------HHHHHHHHHHHHhhHHH
Confidence            455666666666678888999999999999999999999999999999999976         89999999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      |+.+|..+|+++|++.++|+|.|.|+..+.+|++|++.|++++++||++.++...+.+|...+
T Consensus       411 aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  411 ALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999987776

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=9.7e-15  Score=151.91  Aligned_cols=144  Identities=22%  Similarity=0.249  Sum_probs=127.2

Q ss_pred             HHHHHHHHhhhhccc------------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecc
Q 007725           83 EEIATMRARIDAQMN------------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL  150 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~------------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~  150 (591)
                      .+.+.+.+.+++.+.            ..++..+.++..||.+|+.|+|.+|.++|.++|.++|.+..     ..+.||.
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----~naklY~  291 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----TNAKLYG  291 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----hhHHHHH
Confidence            344555566666555            35567788999999999999999999999999999998753     4677999


Q ss_pred             ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      |||.++.++|+.++||.+|+.|++|||.+.++|.+||.||..+++|++|++||++|+++.-+ .+++..|.++...|++.
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS  370 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999877 88999999999998876


Q ss_pred             cC
Q 007725          231 DG  232 (591)
Q Consensus       231 ~~  232 (591)
                      +.
T Consensus       371 kR  372 (486)
T KOG0550|consen  371 KR  372 (486)
T ss_pred             hh
Confidence            54

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.48  E-value=6.4e-15  Score=137.28  Aligned_cols=114  Identities=18%  Similarity=0.258  Sum_probs=108.2

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH
Q 007725          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (591)
Q Consensus       106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~  185 (591)
                      +...|..++..|+|++|+.+|.+++.++|.++.         +|.++|.++.++|+|++|+..|+++++++|+++.++++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~   97 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR---------AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQ   97 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            556799999999999999999999999999876         89999999999999999999999999999999999999


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       186 rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +|.+|..+|++++|+..|+++++++|+++..+..++.++..+.
T Consensus        98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359         98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877664

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=1.2e-14  Score=142.28  Aligned_cols=161  Identities=29%  Similarity=0.376  Sum_probs=133.7

Q ss_pred             CCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhh
Q 007725           51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK  130 (591)
Q Consensus        51 ~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL  130 (591)
                      .|..+..+++.|....|+++....|   +.+.++              ..+.+..+...||.+|+.|+|.+|+.+|..||
T Consensus       143 nPqpL~FviellqVe~P~qYq~e~W---qlsdde--------------Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi  205 (329)
T KOG0545|consen  143 NPQPLVFVIELLQVEAPSQYQRETW---QLSDDE--------------KMKAVPVLHQEGNRLFKLGRYKEASSKYREAI  205 (329)
T ss_pred             CCCceEeehhhhhccCchhhccccc---cCCchH--------------hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHH
Confidence            4677777889999889998887665   333334              45567789999999999999999999999998


Q ss_pred             hcc--------cccccc-ccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          131 KNL--------QGIHSS-EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       131 ~l~--------p~~~~~-e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      -..        |.+|.| ++.....++++|.++|++..++|.++++.|..+|+.+|+|.++||+||.|+...-+.++|.+
T Consensus       206 ~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~  285 (329)
T KOG0545|consen  206 ICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA  285 (329)
T ss_pred             HHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence            754        344432 35556778999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCCh-HHHHHhHHHHHhh
Q 007725          202 DLSNAHEVSPDDGT-IADVLRDAKEILM  228 (591)
Q Consensus       202 ~lekAl~l~P~~~~-a~~~L~~a~~~l~  228 (591)
                      ||.++|+++|.-.. +...|..++.+..
T Consensus       286 D~~~vL~ldpslasvVsrElr~le~r~~  313 (329)
T KOG0545|consen  286 DLQKVLELDPSLASVVSRELRLLENRMA  313 (329)
T ss_pred             HHHHHHhcChhhHHHHHHHHHHHHHHHH
Confidence            99999999998654 4556666655553

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-14  Score=156.75  Aligned_cols=149  Identities=17%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      +.+.++...|.+.+.+.+..++++.++||.+...|.+++|+.+|.++++..|....         ++.|+|.+|.++|++
T Consensus       334 G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa---------a~nNLa~i~kqqgnl  404 (966)
T KOG4626|consen  334 GSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA---------AHNNLASIYKQQGNL  404 (966)
T ss_pred             cchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh---------hhhhHHHHHHhcccH
Confidence            34555666677777777777777777777777777777777777777777666543         677777777777777


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      ++|+.+|.+||+|+|..+++|.|+|.+|.++|+..+|+.+|.+|+.++|...+++.+|+.+.+..+....+...|+..
T Consensus       405 ~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  405 DDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTA  482 (966)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777776666555555554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.45  E-value=2.1e-14  Score=146.10  Aligned_cols=117  Identities=24%  Similarity=0.326  Sum_probs=107.3

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      ++....++..||.||++|+|++||.||.+++.+.|.+|-         +|.||+.+|+++++|..|..+|+.||.+|-.+
T Consensus        94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV---------~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen   94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV---------YHINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc---------chhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            444556899999999999999999999999999998875         79999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      .++|.||+.+...+|...||.++|+.+|++.|++.+....+..+..
T Consensus       165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  165 VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            9999999999999999999999999999999998777666665533

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=7.5e-14  Score=147.74  Aligned_cols=120  Identities=21%  Similarity=0.343  Sum_probs=103.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ..+.+..++++||.+|+.|+|++||.+|.+||.++|+.|.         .|.||+.||..+|+|++.+++|++||+++|+
T Consensus       111 ~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi---------FYsNraAcY~~lgd~~~Vied~TkALEl~P~  181 (606)
T KOG0547|consen  111 RLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI---------FYSNRAACYESLGDWEKVIEDCTKALELNPD  181 (606)
T ss_pred             HHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch---------hhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence            4567889999999999999999999999999999999865         7999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCC-CCChHHHHHhHHHHHh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-DDGTIADVLRDAKEIL  227 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P-~~~~a~~~L~~a~~~l  227 (591)
                      ++++++||+.++-.+|++++|+.|+.-..-++- ++..+.-.+.++..++
T Consensus       182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~  231 (606)
T KOG0547|consen  182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ  231 (606)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence            999999999999999999999999885443332 3444555555554444

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.40  E-value=5.4e-14  Score=150.10  Aligned_cols=117  Identities=17%  Similarity=0.295  Sum_probs=111.6

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .++..|+.+|..|+|.+|+.+|.++|.++|.++.         +|+++|.||+++|+|++|+.+|+++|.++|+++.+|+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~   74 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL   74 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH
Confidence            4778899999999999999999999999999866         8999999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      ++|.+|..+|+|++|+.+|+++++++|++..+...+..|...+...
T Consensus        75 ~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         75 RKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.38  E-value=1.7e-13  Score=140.17  Aligned_cols=243  Identities=19%  Similarity=0.170  Sum_probs=153.4

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (591)
Q Consensus        97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld  176 (591)
                      ....+.+.-.+..+...+..|.+++||+.|..+|.++|....         +|.+|+.+|++++++..||++|..||+|+
T Consensus       108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~---------l~~kr~sv~lkl~kp~~airD~d~A~ein  178 (377)
T KOG1308|consen  108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI---------LYAKRASVFLKLKKPNAAIRDCDFAIEIN  178 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh---------hcccccceeeeccCCchhhhhhhhhhccC
Confidence            344555667778888899999999999999999999998755         89999999999999999999999999999


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHH--hhhcc-cc
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITE--EVGAV-SS  253 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e~~e--~~~~~-~~  253 (591)
                      |+.++.|-.||.++..+|+|++|..+|+.+++++.+ ..+-..|.++....+..++....++...++...  ..... ..
T Consensus       179 ~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~~r~er~r~~  257 (377)
T KOG1308|consen  179 PDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREEREIKERVERVRYA  257 (377)
T ss_pred             cccccccchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHHhcccccccccccc
Confidence            999999999999999999999999999999999865 333444444444333322221111111111000  00000 00


Q ss_pred             CCcCCc-chhhhhhhcCCCCCcccccCCCCCCCCCCCCC----------CCCCChH------hHHHHHhhhhccCCcchh
Q 007725          254 GSHRSS-GTEYLAREKADPSKSEHSANGRGSSTKPEFLP----------DLKDDPE------SIRSFQNFISNANPDSFA  316 (591)
Q Consensus       254 ~~~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----------al~~~Pe------~~~a~~~~i~~~dpe~l~  316 (591)
                      ...... ..+...  ..........+.++.++.++...+          ....++-      .+= +.+.++  |||.++
T Consensus       258 r~~~e~~~~e~~k--~~~~~~~~~~~~g~~p~~M~g~~~~~~~m~~~m~~~~~n~~~~~~p~~~g-i~ki~~--dpev~a  332 (377)
T KOG1308|consen  258 REPEEMANPEEFK--RMLKNPQYRQFLGGFPGGMPGSFPGDKRMTDGMKGFDGNSPVKQQPNQIG-ISKILS--DPEVAA  332 (377)
T ss_pred             cchhhhcChhhhh--hhhccCCCCcccCCCcccCCCCCCCccccccccccCCCCCccccCCCccc-HhhhcC--chHHHH
Confidence            000000 000000  000001111122222222221111          1111111      111 334433  788888


Q ss_pred             hccCCCcccCCchhhhHHHHHhcCCCHHHHHHHHHHhh
Q 007725          317 ALSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQIAS  354 (591)
Q Consensus       317 ~m~~~~~g~~~pdm~K~a~~mm~~mspeel~~m~~~as  354 (591)
                      +++.+...-.-+|.+|...+|+++.+..++-.++.+-+
T Consensus       333 Afqdp~v~aal~d~~~np~n~~kyq~n~kv~~~i~kl~  370 (377)
T KOG1308|consen  333 AFQDPEVQAALMDVSQNPANMMKYQNNPKVMDVISKLS  370 (377)
T ss_pred             hhcChHHHhhhhhcccChHHHHHhccChHHHHHHHHHH
Confidence            88776666677899999999999999999999988644

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=2.6e-13  Score=145.49  Aligned_cols=112  Identities=24%  Similarity=0.318  Sum_probs=107.4

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~  183 (591)
                      ..++.+||.+|..|+|+.|+.+|..+|.++|.+.-         +|.||..||..+++|.+|+++..+.++++|+++++|
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv---------lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy   73 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV---------LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGY   73 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc---------hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHH
Confidence            45789999999999999999999999999999754         899999999999999999999999999999999999


Q ss_pred             HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725          184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       184 ~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                      +++|.++..+|+|++|+..|.+.|+++|++......|..+.
T Consensus        74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999999999999999998887

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=6.1e-13  Score=130.61  Aligned_cols=132  Identities=11%  Similarity=0.048  Sum_probs=118.4

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee-eccc
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTK  160 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y-~~lg  160 (591)
                      .++.+.+...++..++.+++.++.|..+|..+...|+|++|+.+|.+++.+.|+++.         +++++|.|+ +..|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~---------~~~~lA~aL~~~~g  122 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE---------LYAALATVLYYQAG  122 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcC
Confidence            345667777888889999999999999999999999999999999999999999876         789999985 6778


Q ss_pred             c--chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          161 Q--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       161 ~--y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      +  +++|++.++++++++|+++.+++++|.++..+|+|++|+.+|+++++++|.+..-...++.
T Consensus       123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~  186 (198)
T PRK10370        123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES  186 (198)
T ss_pred             CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            7  5999999999999999999999999999999999999999999999999987654444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.32  E-value=3.7e-13  Score=122.50  Aligned_cols=127  Identities=18%  Similarity=0.293  Sum_probs=115.0

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcce
Q 007725           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (591)
Q Consensus        92 ~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~  171 (591)
                      ++..+...++....+..+|..++..|+|++|+..|++++.+.|.++.         +|.++|.||++.|+|.+|+..|++
T Consensus         6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~   76 (135)
T TIGR02552         6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------YWLGLAACCQMLKEYEEAIDAYAL   76 (135)
T ss_pred             HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567777888999999999999999999999999999988866         799999999999999999999999


Q ss_pred             eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +++++|+++..++++|.+|...|++++|+..|+++++++|++.........+...+
T Consensus        77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988777777665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=6.9e-13  Score=135.04  Aligned_cols=109  Identities=21%  Similarity=0.278  Sum_probs=99.9

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      +.++.++..||.||+..+|..|+.+|.++|...-.+++     +.+.+|.||++|.+-+|+|+.||.+|.+|+.++|.+.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~  153 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL  153 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence            36889999999999999999999999999998766654     5688999999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      ++|||=+.|++++.++.+|+.+++..+.++-+..
T Consensus       154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K  187 (390)
T KOG0551|consen  154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK  187 (390)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999999999999999999999999888764443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=1.7e-12  Score=131.19  Aligned_cols=91  Identities=24%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      +-|.=+.+-++|++|+..|++||+++|.++.+|++|+.||.++|+|+.||+++++|+.+||++.++|.+|+.++..++++
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            45555678899999999999999999999999999999999999999999999999999999999999999998888766


Q ss_pred             cCCCCCccchH
Q 007725          231 DGHHGPRGLLI  241 (591)
Q Consensus       231 ~~a~~~~~~~i  241 (591)
                      ..+...|++.+
T Consensus       166 ~~A~~aykKaL  176 (304)
T KOG0553|consen  166 EEAIEAYKKAL  176 (304)
T ss_pred             HHHHHHHHhhh
Confidence            55555555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.26  E-value=3.1e-11  Score=123.34  Aligned_cols=115  Identities=22%  Similarity=0.274  Sum_probs=97.2

Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (591)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~  191 (591)
                      .....++|.++++.|++.++.+|..+.     +....+.-++.||..-+++.+||+.|.++|.++|+++.+++.|+.+|.
T Consensus       278 ~~ie~~~~t~cle~ge~vlk~ep~~~~-----ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  278 QAIEEKHWTECLEAGEKVLKNEPEETM-----IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHhhhhHHHHHHHHHHHHhcCCcccc-----eeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence            345566666677777777666665432     344455668999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       192 ~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      .-..|++|+.+|++|++++++|..+...+..+++...+.+
T Consensus       353 ~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~  392 (504)
T KOG0624|consen  353 GDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSG  392 (504)
T ss_pred             hhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999988776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.25  E-value=1e-12  Score=149.94  Aligned_cols=150  Identities=9%  Similarity=0.003  Sum_probs=123.7

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.+...++..+...+.....+..+|..++..|+|++|+..|.++++++|.++.         +|+++|.+|+..|+|
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~  415 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEF  415 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence            34556777777877778888888888888888888888888888888888887765         788888888888888


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++|+.+|+++++++|++..+|+++|.++..+|++++|+..|++++.+.|+++.++..++.+....++..++...++..+
T Consensus       416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al  494 (615)
T TIGR00990       416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI  494 (615)
T ss_pred             HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888887776666655555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.20  E-value=2.8e-12  Score=119.87  Aligned_cols=116  Identities=12%  Similarity=0.088  Sum_probs=101.9

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      .+.-+.++..|..++..|+|++|+..|+-...++|.+..         .|+|+|.|+..+|+|.+||..|.+|+.++|++
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~---------y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD---------YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            344567899999999999999999999999999999876         89999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                      +.++++.|.||+.+|+.+.|.+.|+.|+.+.-.+++-.....+++
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~  147 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAE  147 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHH
Confidence            999999999999999999999999999998744443333333333

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=5.4e-12  Score=138.30  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=122.0

Q ss_pred             ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725           96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (591)
Q Consensus        96 l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l  175 (591)
                      ....+..++.|...||++--+++++.||++|++||+++|++         .++|.-+|.=+....+|+.|..+|+.||.+
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f---------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~  484 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF---------AYAYTLLGHESIATEEFDKAMKSFRKALGV  484 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc---------chhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence            33577788899999999999999999999999999998886         458888999999999999999999999999


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       176 dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +|++..|||-+|.+|.++++++.|.-.|++|++++|.+..+...++.++.++++.+++..-+++.+
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~  550 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI  550 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888887776655444433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.20  E-value=3.7e-12  Score=150.96  Aligned_cols=141  Identities=4%  Similarity=-0.081  Sum_probs=119.9

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.|...+++.+...+. +..+.++|.++.+.|++++|+.+|.+++.+.|+++.         ++.|+|.++...|++
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------a~~nLG~aL~~~G~~  659 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------YQAALGYALWDSGDI  659 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCH
Confidence            3455677777777877886 788899999999999999999999999999888875         788999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      ++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+.......+++
T Consensus       660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a  730 (987)
T PRK09782        660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL  730 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888887777776655544443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.20  E-value=7.9e-12  Score=148.18  Aligned_cols=184  Identities=13%  Similarity=0.062  Sum_probs=144.8

Q ss_pred             ccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007725           48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL  127 (591)
Q Consensus        48 ~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~  127 (591)
                      ...+.++....++++...+|........-......+++..+...+++.++..+.....+..++..+...|+|++|+..|.
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~  600 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT  600 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            45556666666665544433322211111112233455667777777777666666666666666677799999999999


Q ss_pred             HhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       128 kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      ++++++|. +.         +|+++|.++.++|++++|+..|++++.++|+++.+++++|.++...|++++|+..|++++
T Consensus       601 ~AL~l~P~-~~---------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        601 RSLNIAPS-AN---------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHhCCC-HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999986 44         789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          208 EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       208 ~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +++|+++.++..++.+...+++...+...++..+
T Consensus       671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999988877666666555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.19  E-value=2.9e-12  Score=146.29  Aligned_cols=149  Identities=13%  Similarity=0.030  Sum_probs=131.0

Q ss_pred             HHHHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           84 EIATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        84 e~~~a~~~~~~~l~~---~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      .++.+...++..+..   .+..+..+..+|.+++..|+|++|+..|.++|.++|.++.         +|+++|.+|..+|
T Consensus       309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~---------~~~~la~~~~~~g  379 (615)
T TIGR00990       309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ---------SYIKRASMNLELG  379 (615)
T ss_pred             hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHCC
Confidence            455566666666543   4677889999999999999999999999999999988765         7899999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      +|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+...+++...+...++..
T Consensus       380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a  459 (615)
T TIGR00990       380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC  459 (615)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988888776655555444


Q ss_pred             H
Q 007725          241 I  241 (591)
Q Consensus       241 i  241 (591)
                      +
T Consensus       460 l  460 (615)
T TIGR00990       460 K  460 (615)
T ss_pred             H
Confidence            4

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.16  E-value=9.8e-12  Score=129.46  Aligned_cols=105  Identities=21%  Similarity=0.114  Sum_probs=100.7

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      ..+..++.+|..+...|++.+|+..|.++++++|+++.         +|+++|.+|...|+|++|+..|+++|+++|++.
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~  132 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------AYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  132 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            44778999999999999999999999999999999876         899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      .+|+++|.++...|++++|+.+|+++++++|+++
T Consensus       133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        133 YAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999987

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.14  E-value=2.1e-11  Score=130.11  Aligned_cols=119  Identities=23%  Similarity=0.329  Sum_probs=113.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ++.++++++.+++...|+.|+..|.+||+++|++..         +|.||+.+|++.++|..|+.++.+||+++|.+.++
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~---------~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~   74 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI---------YFANRALAHLKVESFGGALHDALKAIELDPTYIKA   74 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee---------eechhhhhheeechhhhHHHHHHhhhhcCchhhhe
Confidence            567899999999999999999999999999998854         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      |+++|.++..++++.+|+.+|++...+.|+++.+...+.+|.....++
T Consensus        75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~  122 (476)
T KOG0376|consen   75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEE  122 (476)
T ss_pred             eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887653

>PRK12370 invasion protein regulator; Provisional

Probab=99.13  E-value=1e-11  Score=140.07  Aligned_cols=186  Identities=10%  Similarity=-0.007  Sum_probs=146.1

Q ss_pred             hhhhhccCCCchhhh---hhhhhcCCChhHHHHHHHHhh----------cCChHHHHHHHHhhhhcccccchHHHHHHHh
Q 007725           43 ATENMKNMRPEDLKC---AAEQLTHTPPEEVAEIGEKLA----------NASPEEIATMRARIDAQMNYEFNAAKMLKKQ  109 (591)
Q Consensus        43 A~e~m~~~~pe~~~~---a~e~l~~~~pee~~a~~~k~~----------~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~  109 (591)
                      +...+...+++++..   .+++.....|...........          .....++..+...+++.+...++.+.++..+
T Consensus       265 g~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~l  344 (553)
T PRK12370        265 GKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLL  344 (553)
T ss_pred             hHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            333344445554443   344445566665544322211          1123457788888999999999999999999


Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      |..+...|+|++|+.+|+++++++|+++.         +|+++|.+|...|++++|+..|+++++++|.++.+++.++.+
T Consensus       345 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        345 GLINTIHSEYIVGSLLFKQANLLSPISAD---------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            99999999999999999999999999876         789999999999999999999999999999999888888888


Q ss_pred             hhhhhhHHHHhhhcccccccC-CCCChHHHHHhHHHHHhhhccCCCCCc
Q 007725          190 YKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEILMKEDGHHGPR  237 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~-P~~~~a~~~L~~a~~~l~~~~~a~~~~  237 (591)
                      ++..|++++|+..+++++... |+++.++..++.+...+++.+++....
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~  464 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLT  464 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            888999999999999998875 778888888998888777766554443

>PRK12370 invasion protein regulator; Provisional

Probab=99.12  E-value=1.4e-11  Score=138.92  Aligned_cols=145  Identities=10%  Similarity=-0.037  Sum_probs=124.7

Q ss_pred             hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccc---------ccccchhHHHHHHHhhhccccccccccceeeee
Q 007725           77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY---------SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA  147 (591)
Q Consensus        77 ~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~---------~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~  147 (591)
                      +....++.++.+...+++.+...++.+.++..+|.+++         ..+++++|+..|+++++++|+++.         
T Consensus       269 ~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~---------  339 (553)
T PRK12370        269 LNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQ---------  339 (553)
T ss_pred             HHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHH---------
Confidence            33446677888999999999999999988888887654         345689999999999999999876         


Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +|..+|.++...|+|++|+..|+++++++|+++.+|+.+|.+|...|++++|+.+|+++++++|.+..+...+..+....
T Consensus       340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Confidence            78899999999999999999999999999999999999999999999999999999999999999887655544444444


Q ss_pred             hhc
Q 007725          228 MKE  230 (591)
Q Consensus       228 ~~~  230 (591)
                      +++
T Consensus       420 g~~  422 (553)
T PRK12370        420 TGI  422 (553)
T ss_pred             cCH
Confidence            433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=3.9e-11  Score=117.63  Aligned_cols=116  Identities=29%  Similarity=0.306  Sum_probs=103.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+..++..||.+|...+|..||.+|.+||.++|..+.         +|.|++.||+++++|+.+.++|.+|+.++|+.++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~---------Y~tnralchlk~~~~~~v~~dcrralql~~N~vk   79 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS---------YYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVK   79 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch---------hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHH
Confidence            4567899999999999999999999999999998755         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCC-----CCChHHHHHhHHHHH
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-----DDGTIADVLRDAKEI  226 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P-----~~~~a~~~L~~a~~~  226 (591)
                      ++|-+|.++.....|++|+..+.+|+.+--     .-.++...|..+++.
T Consensus        80 ~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~  129 (284)
T KOG4642|consen   80 AHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK  129 (284)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence            999999999999999999999999965532     234677777777553

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.08  E-value=3.4e-11  Score=116.63  Aligned_cols=181  Identities=15%  Similarity=0.130  Sum_probs=133.1

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e  121 (591)
                      +...+...+.++....+++.....|+........ ......++++.+...+...+...+.....+..+|..++..|+|++
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~  117 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQ  117 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHH
Confidence            4444555666666665555555555544433332 111223455667777777777777778888899999999999999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      |+..|.+++...+. +.      ....+.++|.||...|++++|+..|.++++++|++..+++.+|.++...|++++|+.
T Consensus       118 A~~~~~~~~~~~~~-~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       118 AMQQFEQAIEDPLY-PQ------PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHHHHHHhcccc-cc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999875321 11      123678889999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          202 DLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      .+++++.+.|.+...+..+..+....++.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDV  219 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence            99999988887777766666666555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.07  E-value=3.2e-11  Score=138.74  Aligned_cols=124  Identities=15%  Similarity=0.081  Sum_probs=93.3

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh----hhhhcceeeeccccchHH
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE----CIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e----Ai~~~~~AL~ldP~~~~a  182 (591)
                      ...+..++..|+|++|+..|.+++...|.++.         +++++|.+|...|++++    |+..|+++++++|+++.+
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~---------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a  286 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAA---------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI  286 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34466677778888888888888887777654         67778888888888775    678888888888888888


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....++..++...+..
T Consensus       287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~  343 (656)
T PRK15174        287 VTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQ  343 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            888888888888888888888888888888877777777777777666655444443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.05  E-value=4.2e-11  Score=137.72  Aligned_cols=150  Identities=12%  Similarity=0.044  Sum_probs=130.9

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh----HHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN----ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e----Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      .+++.+...+.+.+...++.+..+..+|..++..|+|++    |+..|++++.+.|.++.         ++.++|.+|.+
T Consensus       226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~  296 (656)
T PRK15174        226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR---------IVTLYADALIR  296 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHH
Confidence            345567777888888888899999999999999999986    89999999999998765         78999999999


Q ss_pred             cccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      .|++++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++..+|++..++..++.+...+++.+++...++
T Consensus       297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~  376 (656)
T PRK15174        297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE  376 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987766667777777777666555555


Q ss_pred             chH
Q 007725          239 LLI  241 (591)
Q Consensus       239 ~~i  241 (591)
                      ..+
T Consensus       377 ~al  379 (656)
T PRK15174        377 HYI  379 (656)
T ss_pred             HHH
Confidence            444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=8.3e-11  Score=129.13  Aligned_cols=147  Identities=15%  Similarity=0.121  Sum_probs=103.8

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.+...|..++...++.-.+|+-+|.+|.++++|+.|.-+|.+|++++|.+..         +..-+|..|.++|+.
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv---------i~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV---------ILCHIGRIQHQLKRK  539 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh---------HHhhhhHHHHHhhhh
Confidence            45666667777777777777777777777777777777777777777777766532         445566677777777


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      ++|+..|++|+.+||.++-..|.+|.+++.+++|++|+..|++.-++.|++..++..++++...+++..-+...+.
T Consensus       540 d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~  615 (638)
T KOG1126|consen  540 DKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS  615 (638)
T ss_pred             hHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence            7777777777777777777777777777777777777777777777777777777777777777766655544433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.03  E-value=1.3e-10  Score=113.72  Aligned_cols=180  Identities=16%  Similarity=0.039  Sum_probs=122.1

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e  121 (591)
                      +.+.|.+.+......-.+.....+|..+.++.-+ ...+.-.+.+.+...|++++...++..+.+.|.|..++.+|+|++
T Consensus        42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence            6666666666666666666666666666654443 223334456667777777777777777777777877777777777


Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      |...|++|+. +|..+.      ....|.|+|.|.++.|+++.|..+|+++|++||+++....-++..+++.|+|..|..
T Consensus       122 A~q~F~~Al~-~P~Y~~------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         122 AMQQFERALA-DPAYGE------PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             HHHHHHHHHh-CCCCCC------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            8777777776 344333      344677777777777888778777888888788777777777777777777777777


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          202 DLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      .+++...--+-..+......++.+.+++
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd  222 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGD  222 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence            7777666555444444444444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.03  E-value=2.9e-11  Score=112.67  Aligned_cols=108  Identities=6%  Similarity=-0.119  Sum_probs=99.8

Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      -..+|+++++++|.+            ++++|.++...|+|++|+..|++++.++|.+..+|+++|.++..+|++++|+.
T Consensus        12 ~~~~~~~al~~~p~~------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~   79 (144)
T PRK15359         12 PEDILKQLLSVDPET------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAIN   79 (144)
T ss_pred             HHHHHHHHHHcCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence            456799999998775            45789999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          202 DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      .|++++.++|+++.++..++.+...+++..++...+...+
T Consensus        80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al  119 (144)
T PRK15359         80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI  119 (144)
T ss_pred             HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999998888877777665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.02  E-value=3.9e-11  Score=116.21  Aligned_cols=147  Identities=10%  Similarity=0.053  Sum_probs=127.0

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.+...+.+.+...+.....+..+|..++..|++++|+..|.+++++.|.++.         ++.+++.+|...|+|
T Consensus        45 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        45 GDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD---------VLNNYGTFLCQQGKY  115 (234)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHcccH
Confidence            34556777777777777888899999999999999999999999999999887754         788999999999999


Q ss_pred             hhhhhhcceeeecc--ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          163 DECIKVGSEVLAYD--AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       163 ~eAi~~~~~AL~ld--P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      ++|+..|.+++...  +.....++++|.++...|++++|+..|++++..+|++..++..++.+....++...+....+
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  193 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE  193 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999753  56778999999999999999999999999999999999999999988888776655444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.02  E-value=4.9e-11  Score=136.69  Aligned_cols=141  Identities=6%  Similarity=-0.070  Sum_probs=125.1

Q ss_pred             hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhccee
Q 007725           93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (591)
Q Consensus        93 ~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A  172 (591)
                      ..-....++.++++..+|......|+|++|+..|..++++.|++..         ++.+++.++.+.+++++|+..|+++
T Consensus        76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------a~~~~a~~L~~~~~~eeA~~~~~~~  146 (694)
T PRK15179         76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------AFILMLRGVKRQQGIEAGRAEIELY  146 (694)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3333446667889999999999999999999999999999998865         8899999999999999999999999


Q ss_pred             eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                      +..+|+++.+++.+|.++..+|+|++|++.|++++..+|+++.++-.++.+....++.+.+...++..++
T Consensus       147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998888877666666653

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=1.3e-10  Score=125.94  Aligned_cols=206  Identities=14%  Similarity=0.053  Sum_probs=167.0

Q ss_pred             ChhHHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccc
Q 007725           36 NPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELY  114 (591)
Q Consensus        36 ~p~l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~  114 (591)
                      .|+-+......|+++...+..-++|......|++++++.+. +....-+.-..+...+.+.++..+.+-+++..++..|.
T Consensus       285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSyt  364 (579)
T KOG1125|consen  285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYT  364 (579)
T ss_pred             CCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHh
Confidence            35666778888999888888889999999999999998886 22222233335666677788889999999999999999


Q ss_pred             ccccchhHHHHHHHhhhccccccc----------------------------------cccceeeeeeccccceeeeccc
Q 007725          115 SEGRFSNALQKYLLAKKNLQGIHS----------------------------------SEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus       115 ~~g~y~eAi~~Y~kAL~l~p~~~~----------------------------------~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ..|.-.+|+.++.+=|...|....                                  ......-..++.-||.+|+-.+
T Consensus       365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~  444 (579)
T KOG1125|consen  365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG  444 (579)
T ss_pred             hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence            888888888887776665542211                                  0011123346778999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      +|++|+.+|+.||..+|++...|.++|.++..-.+.+|||..|++|++|.|.+..++.+|+...-.++.++++.+.+-.+
T Consensus       445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888877665554


Q ss_pred             H
Q 007725          241 I  241 (591)
Q Consensus       241 i  241 (591)
                      +
T Consensus       525 L  525 (579)
T KOG1125|consen  525 L  525 (579)
T ss_pred             H
Confidence            4

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.98  E-value=1.6e-10  Score=120.27  Aligned_cols=86  Identities=14%  Similarity=0.059  Sum_probs=46.3

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      ..+...+++.+..+++.+..+..+|..+...|+|++|+..|.++++++|++..         +|.|+|.+|+..|+|++|
T Consensus        81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189         81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHH
Confidence            34444455555555555555555555555555555555555555555555433         455555555555555555


Q ss_pred             hhhcceeeeccccch
Q 007725          166 IKVGSEVLAYDAKNV  180 (591)
Q Consensus       166 i~~~~~AL~ldP~~~  180 (591)
                      +++|+++++++|+++
T Consensus       152 ~~~~~~al~~~P~~~  166 (296)
T PRK11189        152 QDDLLAFYQDDPNDP  166 (296)
T ss_pred             HHHHHHHHHhCCCCH
Confidence            555555555555443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=2.2e-10  Score=124.17  Aligned_cols=135  Identities=16%  Similarity=0.102  Sum_probs=115.2

Q ss_pred             HHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           86 ATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        86 ~~a~~~~~~~l~~~~--~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      ...+..|-......+  ..++....+|..|+-.|+|++|+.||+.||...|.+..         +|+.+|..+....++.
T Consensus       411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~---------lWNRLGAtLAN~~~s~  481 (579)
T KOG1125|consen  411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL---------LWNRLGATLANGNRSE  481 (579)
T ss_pred             HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH---------HHHHhhHHhcCCcccH
Confidence            333344444434444  56788889999999999999999999999999999865         8999999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC----------ChHHHHHhHHHHHhhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD----------GTIADVLRDAKEILMK  229 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~----------~~a~~~L~~a~~~l~~  229 (591)
                      +||..|++||+|.|.+++++||+|.++..+|.|.||+++|-.||.+.++.          ..+|..|+.+.....+
T Consensus       482 EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~  557 (579)
T KOG1125|consen  482 EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNR  557 (579)
T ss_pred             HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999998761          2488888876665543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.93  E-value=2.1e-10  Score=139.99  Aligned_cols=181  Identities=13%  Similarity=0.112  Sum_probs=109.0

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHH--------------HHHHHhcc
Q 007725           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAA--------------KMLKKQGN  111 (591)
Q Consensus        47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a--------------~~lk~~Gn  111 (591)
                      +...+.++....+++.....|+......... .....++++.|...+.+.++..++..              ..+..+|.
T Consensus       280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~  359 (1157)
T PRK11447        280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD  359 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence            3344455555555555555555444433321 11122344455555555554443321              12234466


Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc--
Q 007725          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA--  189 (591)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a--  189 (591)
                      .+++.|++++|+.+|++++.+.|.++.         +++++|.||...|++++|++.|+++++++|++..++..++.+  
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~---------a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQVDNTDSY---------AVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            666777777777777777777666543         567777777777888888888888877777776665544433  


Q ss_pred             ----------------------------------------hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          190 ----------------------------------------YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       190 ----------------------------------------l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                                                              +...|++++|+..|+++++++|+++.++..++.+....++
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence                                                    3345777777777788877777777777777777666666


Q ss_pred             ccCCCCC
Q 007725          230 EDGHHGP  236 (591)
Q Consensus       230 ~~~a~~~  236 (591)
                      .+++...
T Consensus       511 ~~~A~~~  517 (1157)
T PRK11447        511 RSQADAL  517 (1157)
T ss_pred             HHHHHHH
Confidence            5554333

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.91  E-value=9.9e-11  Score=114.97  Aligned_cols=121  Identities=11%  Similarity=0.004  Sum_probs=110.8

Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch-hh
Q 007725          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KD  192 (591)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al-~~  192 (591)
                      ...++.++++..|.++++.+|+++.         .|.++|.+|...|+|++|+..|+++++++|+++..++.+|.++ ..
T Consensus        50 ~~~~~~~~~i~~l~~~L~~~P~~~~---------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~  120 (198)
T PRK10370         50 ASQQTPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ  120 (198)
T ss_pred             cCchhHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            3478889999999999999999976         8999999999999999999999999999999999999999986 67


Q ss_pred             hhh--HHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHH
Q 007725          193 IGR--LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE  243 (591)
Q Consensus       193 lg~--~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e  243 (591)
                      .|+  +++|+..|+++++++|++..++..++.+....++++++...++..++-
T Consensus       121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        121 AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            787  599999999999999999999999999999999988887777776643

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.9e-10  Score=120.35  Aligned_cols=158  Identities=17%  Similarity=0.114  Sum_probs=134.2

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc---cceeeeeeccccceeeeccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE---GRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e---~~~l~~~~~~Nla~~y~~lg  160 (591)
                      +...++.+....++.....+++++..|.+++-..+.+.|+.+|.++|.++|++....   ...-....+.++|.-.++.|
T Consensus       184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G  263 (486)
T KOG0550|consen  184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG  263 (486)
T ss_pred             cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence            455677788888888999999999999999999999999999999999999875411   00111225678888889999


Q ss_pred             cchhhhhhcceeeecccc----chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007725          161 QYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~  236 (591)
                      +|.+|.+.|+++|.+||+    +++.|++|+.++.++|+..+|+.+++.|+.|||.+-+++.+.+.|+..+++.+++.+.
T Consensus       264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d  343 (486)
T KOG0550|consen  264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED  343 (486)
T ss_pred             chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999996    4778999999999999999999999999999999999999999998888887766555


Q ss_pred             ccchH
Q 007725          237 RGLLI  241 (591)
Q Consensus       237 ~~~~i  241 (591)
                      ++..+
T Consensus       344 ~~~a~  348 (486)
T KOG0550|consen  344 YEKAM  348 (486)
T ss_pred             HHHHH
Confidence            55544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.90  E-value=2.1e-10  Score=101.07  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=98.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---  179 (591)
                      ++.++.+|..+++.|+|++|+..|.+++...|+++.      ...+++++|.||++.++|++|+..|.+++..+|++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence            356889999999999999999999999998877642      23368889999999999999999999999999885   


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  219 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~  219 (591)
                      +.+++.+|.++..++++++|+..|++++...|++..+...
T Consensus        76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        76 PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            6789999999999999999999999999999998765443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.89  E-value=9.5e-10  Score=107.79  Aligned_cols=144  Identities=13%  Similarity=-0.010  Sum_probs=129.0

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      .-++...|+..++++++..+....++..++..|.+.|..+.|-+.|++|+.+.|++.+         +++|.|..+...|
T Consensus        47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd---------VLNNYG~FLC~qg  117 (250)
T COG3063          47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD---------VLNNYGAFLCAQG  117 (250)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc---------hhhhhhHHHHhCC
Confidence            3456778999999999999999999999999999999999999999999999999876         8999999999999


Q ss_pred             cchhhhhhcceeeec--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          161 QYDECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       161 ~y~eAi~~~~~AL~l--dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      +|++|...|++|+..  -+...+.|-|+|.|-.+.|+++.|.++|+++++++|+++.....+...+..-+++-.+
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            999999999999863  2456789999999999999999999999999999999998888887777766655443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.89  E-value=1.3e-10  Score=119.61  Aligned_cols=134  Identities=20%  Similarity=0.143  Sum_probs=103.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....+..+...|..+.+.|++++|+++|+++|++.|+++.         +...++.++...|+++++.+.+....+..|+
T Consensus       142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~---------~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~  212 (280)
T PF13429_consen  142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD---------ARNALAWLLIDMGDYDEAREALKRLLKAAPD  212 (280)
T ss_dssp             --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence            3467788999999999999999999999999999999876         6778899999999999988888888888899


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++..+..+|.+|..+|++++|+.+|+++++.+|+|+.++..++.+....++.+.+..-+....
T Consensus       213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999998888766655544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.1e-10  Score=117.90  Aligned_cols=147  Identities=14%  Similarity=0.055  Sum_probs=104.3

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi  166 (591)
                      .+...++++++.+++...+|--.|..|....+...||+.|++|++++|.|-.         +|+.+|++|--++-+.=|+
T Consensus       348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR---------AWYGLGQaYeim~Mh~YaL  418 (559)
T KOG1155|consen  348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR---------AWYGLGQAYEIMKMHFYAL  418 (559)
T ss_pred             HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH---------HHhhhhHHHHHhcchHHHH
Confidence            4555566666667777777777777777777777777777777777776644         6777777777777666777


Q ss_pred             hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                      -+|++|+++.|.+...|..+|.||.++++.++|+++|.+|+...-.+..++-.|+.+.+.+++.+++...+++.++
T Consensus       419 yYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  419 YYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777776666667777777777777777776666666664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.87  E-value=5.2e-10  Score=129.85  Aligned_cols=139  Identities=16%  Similarity=0.129  Sum_probs=110.1

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      +..+...+...+...+.....+..+|..+...|++++|+..|+++++..|.++.         ++.+++.+|...|+ .+
T Consensus       752 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---------~~~~l~~~~~~~~~-~~  821 (899)
T TIGR02917       752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV---------VLNNLAWLYLELKD-PR  821 (899)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCc-HH
Confidence            445555566666667777788888888888888888888888888888777654         67788888888888 77


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      |+..+++++.+.|+++..+..+|.++...|++++|+.+|+++++++|.++.++..+..+..+.++..++
T Consensus       822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  890 (899)
T TIGR02917       822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA  890 (899)
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888888888888888888888888888888888888888888888877776654443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.85  E-value=7.7e-10  Score=135.07  Aligned_cols=144  Identities=13%  Similarity=0.099  Sum_probs=120.8

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc---------------------
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------------------  141 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~---------------------  141 (591)
                      .+++.|...+++.+...+..+..+..+|.++...|+|++|+++|++++++.|.+.....                     
T Consensus       365 g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l  444 (1157)
T PRK11447        365 NNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASL  444 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            35667888888888889999999999999999999999999999999999988653100                     


Q ss_pred             ------------ceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          142 ------------RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       142 ------------~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                                  ..+...++.+++.+|...|++++|++.|+++++++|+++.+++.+|.+|..+|++++|+..|++++++
T Consensus       445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~  524 (1157)
T PRK11447        445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ  524 (1157)
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence                        00111234456777888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHhHHHHH
Q 007725          210 SPDDGTIADVLRDAKEI  226 (591)
Q Consensus       210 ~P~~~~a~~~L~~a~~~  226 (591)
                      +|+++.++..++.....
T Consensus       525 ~P~~~~~~~a~al~l~~  541 (1157)
T PRK11447        525 KPNDPEQVYAYGLYLSG  541 (1157)
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999887766654433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.85  E-value=1.4e-10  Score=93.49  Aligned_cols=64  Identities=30%  Similarity=0.512  Sum_probs=62.4

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh-hHHHHhhhcccccccCC
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-~~eeAl~~lekAl~l~P  211 (591)
                      .|.++|.+|+..++|++|+..|+++|+++|+++.+|+++|.+|..+| ++++|+.+|+++++++|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            68899999999999999999999999999999999999999999999 89999999999999998

...

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.2e-09  Score=118.21  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=120.5

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      +.-+..-+..++...|..+-.+..+|.++|..+.|.+|+.+|.+++...+.... +.. ...+.+.|+|.+|+++++|++
T Consensus       396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~-~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKI-FWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-ccc-chhHHHHhHHHHHHHHhhHHH
Confidence            444555666667778888999999999999999999999999999965444322 111 235578999999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      ||..|+++|.+.|.++.+|...|.+|..+|+++.|++.|.+||.++|++..+...|+.+.+.
T Consensus       474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999888888877655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=5.4e-10  Score=118.31  Aligned_cols=130  Identities=18%  Similarity=0.084  Sum_probs=121.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ++...-.||.|.-++++++|+.+|++||+++|....         +|.-.|.=|..+++-..||+.|++|++++|.+-++
T Consensus       330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~---------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLS---------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhH---------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            456677899999999999999999999999998754         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ||-+|++|.-++-+.=|+-+|++|+++.|+|+.+|..|++|..++.+..++...+..++
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai  459 (559)
T KOG1155|consen  401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI  459 (559)
T ss_pred             HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888888877766

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.82  E-value=1.5e-09  Score=115.63  Aligned_cols=211  Identities=13%  Similarity=0.080  Sum_probs=175.0

Q ss_pred             CcchHHHHHHHHhhChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhccccc
Q 007725           22 SPDDFARIQQQMMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYE   99 (591)
Q Consensus        22 ~p~~l~r~~~~~~~~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~   99 (591)
                      +.+||.....---.++. +|+.|+-.++...++....-+......+|+.....+.|. ...-.++++.|..++++.+..+
T Consensus       345 a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~  424 (606)
T KOG0547|consen  345 AQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD  424 (606)
T ss_pred             hhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            34445443331123445 888888888888899888888888888888777766652 2234568999999999999999


Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-  178 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-  178 (591)
                      ++.+..+..++..+++++++.++...|+.++...|..++         +|.-.+.++...++|+.|++.|+.||++.|. 
T Consensus       425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E---------vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~  495 (606)
T KOG0547|consen  425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE---------VYNLFAEILTDQQQFDKAVKQYDKAIELEPRE  495 (606)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch---------HHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999999999988         8888999999999999999999999999999 


Q ss_pred             -----chHHHHHhccchhh-hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          179 -----NVKALYRRGQAYKD-IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       179 -----~~~a~~~rg~al~~-lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                           ++-.+.+.|.++.+ .+++..|+..+++|+++||.-..++..|+.++-+.++..++.+-+++.+
T Consensus       496 ~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  496 HLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             ccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                 88888887776653 4789999999999999999999999999998888777766665555544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.81  E-value=1.2e-09  Score=111.96  Aligned_cols=119  Identities=22%  Similarity=0.263  Sum_probs=107.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..++.++.+|+.++.+|+|.+|+..|..|++.+|++-.         +++.|+.+|+.+|+-..|+.+++++|++.|+
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---------aifrRaT~yLAmGksk~al~Dl~rVlelKpD  104 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---------AIFRRATVYLAMGKSKAALQDLSRVLELKPD  104 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---------HHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence            4556788999999999999999999999999999998754         7899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHH
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEI  226 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~  226 (591)
                      ..-+...||.++.+.|++++|..+|+..|..+|.+.   ++++.|..+.+.
T Consensus       105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~  155 (504)
T KOG0624|consen  105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH  155 (504)
T ss_pred             HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence            999999999999999999999999999999999653   556666655443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=6.7e-10  Score=106.27  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=96.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+..++.+|..+...|+|++|+.+|.+++.+.++.+.      ...++.++|.||.++|+|++|+..|.+++.++|.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  104 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------RSYILYNMGIIYASNGEHDKALEYYHQALELNPK  104 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            5566788999999999999999999999999998765432      1347899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhh--------------HHHHhhhcccccccCCCC
Q 007725          179 NVKALYRRGQAYKDIGR--------------LEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~--------------~eeAl~~lekAl~l~P~~  213 (591)
                      +..+++.+|.+|..+|+              +++|+..+++++.++|++
T Consensus       105 ~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        105 QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99999999999998887              677888888888888876

>PLN02789 farnesyltranstransferase

Probab=98.81  E-value=1.9e-09  Score=113.39  Aligned_cols=136  Identities=10%  Similarity=-0.061  Sum_probs=122.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ..+.+...+...+..+++...++..+|.++...+ ++.+++..|.+++..+|.+..         +|.+|+.++.+++++
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq---------aW~~R~~~l~~l~~~  122 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ---------IWHHRRWLAEKLGPD  122 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH---------HhHHHHHHHHHcCch
Confidence            3446777777888889999999999999999988 689999999999999998865         799999999888874


Q ss_pred             --hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          163 --DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       163 --~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                        .+++.+++++|++||+|..+|+.|+.++..+|+|++|++++.++++++|.|..+|.....+...++
T Consensus       123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~  190 (320)
T PLN02789        123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSP  190 (320)
T ss_pred             hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcc
Confidence              788999999999999999999999999999999999999999999999999999999998876653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.80  E-value=6.2e-10  Score=90.70  Aligned_cols=99  Identities=30%  Similarity=0.438  Sum_probs=91.4

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .++.+|..++..|+|.+|+..|.++++..|.++.         ++++++.||...+++++|++.|++++.+.|.+...++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~   72 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD---------AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY   72 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence            4677888999999999999999999999887653         6889999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCC
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      .+|.++...|++++|...+++++.++|+
T Consensus        73 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          73 NLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999988874

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=2.7e-09  Score=112.36  Aligned_cols=182  Identities=18%  Similarity=0.155  Sum_probs=144.1

Q ss_pred             HHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc----CChHHHHHHHHhhhhcccccchHHHHHHHhccccccc
Q 007725           41 RIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN----ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE  116 (591)
Q Consensus        41 r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~----~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~  116 (591)
                      ..|.+.|++.+.+....+...+...+.....+....+..    +...++..++...+.++....-++.++.++||..|..
T Consensus       424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~n  503 (840)
T KOG2003|consen  424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFAN  503 (840)
T ss_pred             hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeec
Confidence            347777777777666665555544333332222222111    1233566666666666666666788999999999999


Q ss_pred             ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhH
Q 007725          117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  196 (591)
Q Consensus       117 g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~  196 (591)
                      |+|++|++.|++||..+..+..         +++|+|..+..+|+.++|+++|-+...+--+++..++.++.+|..+.+.
T Consensus       504 gd~dka~~~ykeal~ndasc~e---------alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTE---------ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHH---------HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence            9999999999999998777655         7899999999999999999999988888889999999999999999999


Q ss_pred             HHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          197 EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       197 eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      ..|+++|-++..+-|+++.++..|+.+..+-++..
T Consensus       575 aqaie~~~q~~slip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchh
Confidence            99999999999999999999999999877655543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.79  E-value=4.6e-09  Score=121.97  Aligned_cols=182  Identities=15%  Similarity=0.078  Sum_probs=128.8

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcc-cccchHHHHHHHhcccccccccch
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQM-NYEFNAAKMLKKQGNELYSEGRFS  120 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l-~~~~~~a~~lk~~Gn~~~~~g~y~  120 (591)
                      +.-.+...+.++.....+++....|+......... .....+.++.+...+.... ...+..+..+..+|..++..|+|+
T Consensus        63 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (899)
T TIGR02917        63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLE  142 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHH
Confidence            33344455566665555555554444322211110 0111123334444444332 234556778888899999999999


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl  200 (591)
                      +|+..|.+++...|.++.         +++.++.+++..|+|++|+..++++++.+|.+..+++.+|.++...|++++|+
T Consensus       143 ~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  213 (899)
T TIGR02917       143 LAQKSYEQALAIDPRSLY---------AKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELAL  213 (899)
T ss_pred             HHHHHHHHHHhcCCCChh---------hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Confidence            999999999998887654         68888999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          201 SDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       201 ~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      .+|++++.++|++..++..+..+....++..++
T Consensus       214 ~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A  246 (899)
T TIGR02917       214 AAYRKAIALRPNNPAVLLALATILIEAGEFEEA  246 (899)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999998888887777776665554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.78  E-value=3.5e-10  Score=91.06  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=63.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccc
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDA  177 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP  177 (591)
                      .+..+..+|..++..|+|++|+.+|.++|+++|.++.         +|+|+|.||.++| +|.+|+++|+++|+++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~---------~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE---------AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH---------HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678999999999999999999999999999999876         8999999999999 89999999999999998

...

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.76  E-value=8e-10  Score=110.33  Aligned_cols=146  Identities=12%  Similarity=-0.012  Sum_probs=117.4

Q ss_pred             HHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-
Q 007725           84 EIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-  159 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~---a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-  159 (591)
                      +++.+...++..+...+..   ..+++.+|..++..|+|++|+..|.++++..|+++.      ...+++++|.||... 
T Consensus        48 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~~g~~~~~~~  121 (235)
T TIGR03302        48 DYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD------ADYAYYLRGLSNYNQI  121 (235)
T ss_pred             CHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------hHHHHHHHHHHHHHhc
Confidence            4445666666655555543   467899999999999999999999999999998764      122467777777765 


Q ss_pred             -------ccchhhhhhcceeeeccccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC--
Q 007725          160 -------KQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--  213 (591)
Q Consensus       160 -------g~y~eAi~~~~~AL~ldP~~~~a~-----------------~~rg~al~~lg~~eeAl~~lekAl~l~P~~--  213 (591)
                             +++++|++.|+++++.+|++..++                 +.+|.+|...|++.+|+..|++++...|++  
T Consensus       122 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (235)
T TIGR03302       122 DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA  201 (235)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence                   899999999999999999986542                 467888999999999999999999998765  


Q ss_pred             -ChHHHHHhHHHHHhhhccCCCC
Q 007725          214 -GTIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       214 -~~a~~~L~~a~~~l~~~~~a~~  235 (591)
                       .+++..++.+...+++..++..
T Consensus       202 ~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       202 TEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHH
Confidence             4788999999999887666544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.75  E-value=7.9e-10  Score=92.97  Aligned_cols=83  Identities=25%  Similarity=0.392  Sum_probs=72.8

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (591)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~  195 (591)
                      .|+|++|+..|++++...|.++.       ..+++++|.||++.|+|++|+..+++ +++++.+...++.+|.|+..+|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~-------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~   73 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPN-------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK   73 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHH-------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred             CccHHHHHHHHHHHHHHCCCChh-------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence            58999999999999999885321       22678899999999999999999999 99999999999999999999999


Q ss_pred             HHHHhhhcccc
Q 007725          196 LEEAVSDLSNA  206 (591)
Q Consensus       196 ~eeAl~~lekA  206 (591)
                      |++|+..|++|
T Consensus        74 y~eAi~~l~~~   84 (84)
T PF12895_consen   74 YEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>PLN02789 farnesyltranstransferase

Probab=98.74  E-value=3.5e-09  Score=111.41  Aligned_cols=168  Identities=10%  Similarity=-0.042  Sum_probs=138.6

Q ss_pred             CCCchhhhhhhhhcCCChhHHHHHHHHhh--cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc--hhHHHH
Q 007725           50 MRPEDLKCAAEQLTHTPPEEVAEIGEKLA--NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF--SNALQK  125 (591)
Q Consensus        50 ~~pe~~~~a~e~l~~~~pee~~a~~~k~~--~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y--~eAi~~  125 (591)
                      -..++......++....|+....+..+..  ..-...++.+...+...+..+++....+..++..+.+.+++  .+++.+
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence            35556666677777788888887766521  11122456677778888888999999999999888777764  788999


Q ss_pred             HHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh---hhH----HH
Q 007725          126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRL----EE  198 (591)
Q Consensus       126 Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l---g~~----ee  198 (591)
                      +.++|+.+|.+..         +|.+|+.++..+++|++++++|+++|++||.|..+|+.|+.++..+   +.+    ++
T Consensus       131 ~~kal~~dpkNy~---------AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        131 TRKILSLDAKNYH---------AWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             HHHHHHhCcccHH---------HHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence            9999999998866         8999999999999999999999999999999999999999998776   333    57


Q ss_pred             HhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          199 AVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       199 Al~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      ++.++.+++.++|+|..+|..++-+...
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            8999999999999999999999888654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.74  E-value=6.3e-09  Score=119.52  Aligned_cols=124  Identities=8%  Similarity=-0.106  Sum_probs=115.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      .++.+...++..+...|+.+.++.+.+..+++.+++++|+..+++++...|+++.         .++++|.|+.++|+|+
T Consensus       101 ~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~---------~~~~~a~~l~~~g~~~  171 (694)
T PRK15179        101 RSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR---------EILLEAKSWDEIGQSE  171 (694)
T ss_pred             CcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH---------HHHHHHHHHHHhcchH
Confidence            3556778888888999999999999999999999999999999999999999876         7899999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a  216 (591)
                      +|+..|++++..+|++++++..+|.++...|+.++|+..|++|+++..+....
T Consensus       172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~  224 (694)
T PRK15179        172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK  224 (694)
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence            99999999999999999999999999999999999999999999998765543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.74  E-value=2.7e-09  Score=114.12  Aligned_cols=122  Identities=15%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch---
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---  180 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~---  180 (591)
                      ..+..+|..++..|+|++|+..|.++++..|.+..         ++.+++.+|.+.|+|++|++.+.++++.+|.+.   
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  178 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEG---------ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE  178 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHH---------HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence            44556666666666666666666666665444322         455666666666666666666666666555432   


Q ss_pred             --HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725          181 --KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (591)
Q Consensus       181 --~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~  234 (591)
                        ..++.+|.++...|++++|+..|+++++++|++..++..++.+....++.+++.
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  234 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI  234 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH
Confidence              244556666666666666666666666666666556666665555555444433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.71  E-value=2.3e-09  Score=102.03  Aligned_cols=109  Identities=17%  Similarity=0.089  Sum_probs=91.9

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....+..+...|..++..|+|++|+..|.+++.+.++...      ...+|.|+|.||...|++++|+..|++++.++|.
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            4446788999999999999999999999999998665321      2347999999999999999999999999999999


Q ss_pred             chHHHHHhccchh-------hhhhHH-------HHhhhcccccccCCCC
Q 007725          179 NVKALYRRGQAYK-------DIGRLE-------EAVSDLSNAHEVSPDD  213 (591)
Q Consensus       179 ~~~a~~~rg~al~-------~lg~~e-------eAl~~lekAl~l~P~~  213 (591)
                      +...++++|.++.       .+|+++       +|+..|++++..+|.+
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            9999999999998       666666       5666666777788764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.70  E-value=1.5e-09  Score=98.57  Aligned_cols=107  Identities=16%  Similarity=0.055  Sum_probs=96.3

Q ss_pred             HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (591)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l  203 (591)
                      +.|.+++...|.+..         .++.++.+|+..|+|++|+..+++++.++|.++.+++++|.++...|++++|+.+|
T Consensus         4 ~~~~~~l~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~   74 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE---------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY   74 (135)
T ss_pred             hhHHHHHcCChhhHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999888754         67899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       204 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      ++++.++|++...+..++.+....++.+.+...++.
T Consensus        75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  110 (135)
T TIGR02552        75 ALAAALDPDDPRPYFHAAECLLALGEPESALKALDL  110 (135)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999988776665544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=6.8e-09  Score=105.83  Aligned_cols=140  Identities=18%  Similarity=0.164  Sum_probs=119.8

Q ss_pred             hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        78 ~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      ....+++.+.....++..++.+|..++.|.-+|..|...|++..|...|.+|+++.|++++         .+.-++.+++
T Consensus       131 ~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~---------~~~g~aeaL~  201 (287)
T COG4235         131 QPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE---------ILLGLAEALY  201 (287)
T ss_pred             cCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH---------HHHHHHHHHH
Confidence            3345566777888888899999999999999999999999999999999999999999987         4555666555


Q ss_pred             cc---ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          158 KT---KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       158 ~l---g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      ..   ..-.++...++++|++||.++.+++.+|..++..|+|.+|+..++..+.+.|.+..-...+......
T Consensus       202 ~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         202 YQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            43   3467888999999999999999999999999999999999999999999999887766666554333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.69  E-value=5.5e-09  Score=104.24  Aligned_cols=128  Identities=15%  Similarity=0.039  Sum_probs=117.7

Q ss_pred             ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725           96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (591)
Q Consensus        96 l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l  175 (591)
                      ..+.++....+..+|..++..|+|.+|+..+.++..+.|++..         +|.-+|.||.+.|++++|...|.+++++
T Consensus        93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L  163 (257)
T COG5010          93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------AWNLLGAALDQLGRFDEARRAYRQALEL  163 (257)
T ss_pred             hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------hhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence            4456667778888999999999999999999999999999976         8999999999999999999999999999


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       176 dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      .|..+.++.|+|..|+-.|+++.|...+.++...-+.+..+..+|..+....++...
T Consensus       164 ~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         164 APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence            999999999999999999999999999999998888899999999998887766544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.68  E-value=5.6e-09  Score=111.62  Aligned_cols=141  Identities=14%  Similarity=0.027  Sum_probs=79.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+.....+..++..+.+.|+|++|++.|.+++...|.....    ....+|.+++.+|++.++++
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~  197 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV----EIAHFYCELAQQALARGDLD  197 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHHHHhCCCHH
Confidence            34455555555555455555566666666666666666666666666655443210    01123455666666666666


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHHHhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILM  228 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-~~a~~~L~~a~~~l~  228 (591)
                      +|+..|+++++++|++..+++.+|.+|...|++++|+..|++++..+|.+ ..++..+..+....+
T Consensus       198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g  263 (389)
T PRK11788        198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG  263 (389)
T ss_pred             HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence            66666666666666666666666666666666666666666666665554 233444444443333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.67  E-value=3.9e-09  Score=105.39  Aligned_cols=118  Identities=17%  Similarity=0.215  Sum_probs=103.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....+..++.+|..++..|+|++|+..|.+++...|.++.      ...+++++|.+|++.++|++|+..|+++++.+|+
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~  102 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN  102 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC
Confidence            3456778999999999999999999999999999888753      2236789999999999999999999999999998


Q ss_pred             chH---HHHHhccchhhh--------hhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          179 NVK---ALYRRGQAYKDI--------GRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       179 ~~~---a~~~rg~al~~l--------g~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      ++.   +++.+|.++...        |++++|+..|++++..+|++..++..+..
T Consensus       103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~  157 (235)
T TIGR03302       103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR  157 (235)
T ss_pred             CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence            877   799999999876        89999999999999999998766554443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.64  E-value=6.8e-09  Score=121.68  Aligned_cols=133  Identities=12%  Similarity=0.045  Sum_probs=117.0

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi  166 (591)
                      .+...+.......+..+..+..+|..+...|++.+|+.+|+++|.+.|.++.         ++.+++.++...|++++|+
T Consensus        33 ~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~l~~~g~~~eA~  103 (765)
T PRK10049         33 EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------YQRGLILTLADAGQYDEAL  103 (765)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHHHH
Confidence            3445555555455666778999999999999999999999999999998876         6789999999999999999


Q ss_pred             hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      ..++++++.+|+++. ++.+|.++...|++++|+..|+++++++|++..++..++.+....+.
T Consensus       104 ~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~  165 (765)
T PRK10049        104 VKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL  165 (765)
T ss_pred             HHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            999999999999999 99999999999999999999999999999999998888877654433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.64  E-value=4.8e-09  Score=98.70  Aligned_cols=120  Identities=13%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ..+.-+.++..|-.++..|+|++|...|+-...+++.++.         .+..+|.|+..+++|++|+..|..+..++++
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~---------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~  103 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD---------YTMGLAAVCQLKKQFQKACDLYAVAFTLLKN  103 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence            3445567888899999999999999999999999998876         7899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      ++..+|+.|.||..+|+.++|+.+|+.++. .|.+..++..-......+.
T Consensus       104 dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        104 DYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             CCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998 5776666555555444443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.60  E-value=2.6e-09  Score=85.10  Aligned_cols=64  Identities=28%  Similarity=0.394  Sum_probs=59.2

Q ss_pred             ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      .+|..|++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            4677889999999999999999999999999999999999999999999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.60  E-value=2.4e-08  Score=117.09  Aligned_cols=104  Identities=8%  Similarity=-0.035  Sum_probs=70.6

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~  183 (591)
                      ..+..++..+...|++++|+.+|.+++...|.++.         +++++|.++...|++++|++.|+++++++|++..++
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~  430 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLE  430 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHH
Confidence            44555666666667777777777777766666654         566677777777777777777777777777777777


Q ss_pred             HHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725          184 YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       184 ~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a  216 (591)
                      +.+|.++..+++|++|+..++++++.+|+++.+
T Consensus       431 ~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        431 VEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            777777777777777777777777777766644

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=2.4e-08  Score=102.01  Aligned_cols=141  Identities=13%  Similarity=0.018  Sum_probs=124.4

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++.+.+..-|...++..+..++++-..|.-||-.++.+-|+.+|++.|++--..|+         +++|+|.|.+-.++|
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe---------Lf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE---------LFCNIGLCCLYAQQI  374 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH---------HHhhHHHHHHhhcch
Confidence            45666777888888888888999999999999999999999999999998777776         899999999999999


Q ss_pred             hhhhhhcceeeecc--c-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          163 DECIKVGSEVLAYD--A-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       163 ~eAi~~~~~AL~ld--P-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      +-++..+.+|+..-  | .-++.|||+|.+.+..|++.-|..+|+-|+..||++.+++.+|+.++.+-++..+
T Consensus       375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~  447 (478)
T KOG1129|consen  375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG  447 (478)
T ss_pred             hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence            99999999998763  3 4578999999999999999999999999999999999999999998766554433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.50  E-value=1.2e-08  Score=95.60  Aligned_cols=95  Identities=11%  Similarity=0.045  Sum_probs=88.3

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ..+.+|..++..|+|++|+..|+.+..+||.++.+|+++|.|+..+|+|++|+..|.+|+.++|+++..+..++.|...+
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence            34557777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccchHH
Q 007725          228 MKEDGHHGPRGLLIE  242 (591)
Q Consensus       228 ~~~~~a~~~~~~~i~  242 (591)
                      ++...+...++.+|.
T Consensus       117 G~~~~A~~aF~~Ai~  131 (157)
T PRK15363        117 DNVCYAIKALKAVVR  131 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            998888888877773

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.47  E-value=3.2e-08  Score=89.13  Aligned_cols=102  Identities=19%  Similarity=0.200  Sum_probs=90.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  179 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--  179 (591)
                      ....+--+|..+...|+.+.|++.|.++|.+.|..+.         +|+||+.+|+-.|+.++|++++++|+++.-+.  
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS---------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~tr  112 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERAS---------AYNNRAQALRLQGDDEEALDDLNKALELAGDQTR  112 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH---------hhccHHHHHHHcCChHHHHHHHHHHHHhcCccch
Confidence            3445666788899999999999999999999999876         89999999999999999999999999986543  


Q ss_pred             --hHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          180 --VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       180 --~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                        -.+|..||..|..+|+.+.|..+|+.|.++-..
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence              457899999999999999999999999887544

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.46  E-value=9.6e-08  Score=108.91  Aligned_cols=139  Identities=19%  Similarity=0.224  Sum_probs=125.4

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      .+..|...|.+.++..|++..+-.-.|.++...|+|.+|+..|.++.+-...++.         +|+|+|.||+.+|+|.
T Consensus       627 ~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d---------v~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  627 HQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED---------VWLNLAHCYVEQGQYR  697 (1018)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc---------eeeeHHHHHHHHHHHH
Confidence            4667888899999999999999999999999999999999999999886554443         8999999999999999


Q ss_pred             hhhhhcceeeec--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          164 ECIKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       164 eAi~~~~~AL~l--dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      .||+.|+.+++-  .-++...+..+|.++++.|.|.+|..++.+|+.+.|.++.+..+++.+.+++...-
T Consensus       698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~  767 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESI  767 (1018)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHH
Confidence            999999999874  34678899999999999999999999999999999999999999999988886653

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.45  E-value=3.3e-08  Score=105.80  Aligned_cols=104  Identities=11%  Similarity=0.091  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      +++..|...|.+.+...+..+..+.++|.+++..|+|++|+..|.++|.++|.++.         +|+++|.+|+.+|+|
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~---------a~~~lg~~~~~lg~~   86 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK---------AYLRKGTACMKLEEY   86 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHhCCH
Confidence            35666777777888888888999999999999999999999999999999998865         799999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~  195 (591)
                      ++|+.+|+++++++|++..++..++.|...+..
T Consensus        87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         87 QTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998888776643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.45  E-value=7.4e-09  Score=106.49  Aligned_cols=181  Identities=14%  Similarity=0.058  Sum_probs=97.7

Q ss_pred             CCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhh
Q 007725           51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAK  130 (591)
Q Consensus        51 ~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL  130 (591)
                      +.++...+++++...++.......+.+.-....++..+..-+....+. ......+......+...++++++...+.++.
T Consensus        59 ~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~  137 (280)
T PF13429_consen   59 DYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLE  137 (280)
T ss_dssp             ------------------------------------------------------------H-HHHTT-HHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence            344555555555544433222222211112223333344333333322 2345556666677888999999999998877


Q ss_pred             hcc--ccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725          131 KNL--QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       131 ~l~--p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~  208 (591)
                      ...  +.+         ..+|.-+|.||.+.|++++|+++|++||+++|++..++..++.++...|+++++...++...+
T Consensus       138 ~~~~~~~~---------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~  208 (280)
T PF13429_consen  138 ELPAAPDS---------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLK  208 (280)
T ss_dssp             H-T---T----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hccCCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            543  223         337888999999999999999999999999999999999999999999999998888888888


Q ss_pred             cCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          209 VSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       209 l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ..|+++.++..++.+...+++.+.+...++..+
T Consensus       209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HCcCHHHHHHHHHHHhccccccccccccccccc
Confidence            889999999999999999988776655555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.42  E-value=4.1e-08  Score=79.79  Aligned_cols=69  Identities=30%  Similarity=0.497  Sum_probs=63.5

Q ss_pred             ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725          153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (591)
Q Consensus       153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~  221 (591)
                      ..+|++.++|++|++.+++++.++|+++..|+.+|.+|..+|+|++|+.+|+++++++|++..+.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            456889999999999999999999999999999999999999999999999999999999887655443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.41  E-value=6e-08  Score=103.99  Aligned_cols=123  Identities=18%  Similarity=0.087  Sum_probs=78.5

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      .....++..+..++..|++++|+..+...+...|+++.         ++.-++.++++.+++.+|++.+++++.++|+..
T Consensus       304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~---------~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~  374 (484)
T COG4783         304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY---------YLELAGDILLEANKAKEAIERLKKALALDPNSP  374 (484)
T ss_pred             cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc
Confidence            44445566666666666666666666666666666543         344466666666666666666666666666666


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      -..+++|.+|...|++.+|+..+++.+.-+|+|+..|..|..+...+++..+
T Consensus       375 ~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~  426 (484)
T COG4783         375 LLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE  426 (484)
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH
Confidence            6666666666666666666666666666666666666666666666655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.40  E-value=1.7e-08  Score=80.38  Aligned_cols=64  Identities=19%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      .+|..++..|+|++|+.+|+++++..|.++.         +++.+|.||..+|+|++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE---------AWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH---------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5788999999999999999999999999876         899999999999999999999999999999875

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.40  E-value=1.8e-07  Score=86.89  Aligned_cols=100  Identities=22%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      -...+.+.+|..++..|+|++|+..|.+++...++..      +...+.++++.|++..|+|++|+..++. +.-.+-.+
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~  118 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKA  118 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHH
Confidence            3466788899999999999999999999999764432      2344788899999999999999999966 44455677


Q ss_pred             HHHHHhccchhhhhhHHHHhhhccccc
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      .++..+|.+|...|++++|+..|++|+
T Consensus       119 ~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  119 LAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            889999999999999999999999885

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.39  E-value=7e-08  Score=98.87  Aligned_cols=109  Identities=13%  Similarity=0.060  Sum_probs=94.4

Q ss_pred             HHHHHHhcccc-cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc---
Q 007725          103 AKMLKKQGNEL-YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---  178 (591)
Q Consensus       103 a~~lk~~Gn~~-~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---  178 (591)
                      ....+..+..+ ++.|+|++|+..|.+.+...|+.+.      ...+++-+|.+|+..|+|++|+..|.++++..|+   
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~  215 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK  215 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            35566677665 6789999999999999999888742      2337889999999999999999999999988776   


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA  217 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~  217 (591)
                      .+.+++.+|.++..+|++++|+..|+++++..|+...+.
T Consensus       216 ~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        216 AADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            588999999999999999999999999999999876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.38  E-value=7.3e-08  Score=77.15  Aligned_cols=66  Identities=27%  Similarity=0.361  Sum_probs=60.7

Q ss_pred             eccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      ++.|+|++|++.|++++..+|++..+++.++.||...|++++|...+++++..+|+++.++..+..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            467999999999999999999999999999999999999999999999999999998877776654

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.37  E-value=7.9e-08  Score=103.10  Aligned_cols=134  Identities=16%  Similarity=0.111  Sum_probs=119.7

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      ..+.+.++.-+...|+++..+--.+..+++.+++.+|++.|++++.+.|..+-         +++|+|.+|++.|++.+|
T Consensus       323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------l~~~~a~all~~g~~~ea  393 (484)
T COG4783         323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL---------LQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------HHHHHHHHHHhcCChHHH
Confidence            34445555555678889999999999999999999999999999999998754         789999999999999999


Q ss_pred             hhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       166 i~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      |..+.+.+.-+|+++..|..++.+|..+|+..+|+..+...+.+.-+...++..+..++++.+
T Consensus       394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~  456 (484)
T COG4783         394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVK  456 (484)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999998888888888887777664

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.37  E-value=5.4e-08  Score=99.93  Aligned_cols=92  Identities=18%  Similarity=0.106  Sum_probs=86.0

Q ss_pred             cccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       150 ~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      .-+|.-|+++|+|++||.+|.+++.++|.|+..|.||+.+|+++++|..|..+|+.|+.++-.+..++.+.+.+++.|+.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccchH
Q 007725          230 EDGHHGPRGLLI  241 (591)
Q Consensus       230 ~~~a~~~~~~~i  241 (591)
                      ..++.+.++.++
T Consensus       181 ~~EAKkD~E~vL  192 (536)
T KOG4648|consen  181 NMEAKKDCETVL  192 (536)
T ss_pred             HHHHHHhHHHHH
Confidence            888777666655

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.6e-07  Score=95.74  Aligned_cols=134  Identities=28%  Similarity=0.347  Sum_probs=117.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc----------cccceeeeeeccccceeeeccccchhhhhh
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS----------SEGRTLLLACSLNSMSCYLKTKQYDECIKV  168 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~----------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~  168 (591)
                      .....+..++.|+..++.++|..|...|.+++.+....+.          ..+..+...++.|++.|-++.+.|..|+..
T Consensus       218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~  297 (372)
T KOG0546|consen  218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFR  297 (372)
T ss_pred             hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceec
Confidence            4455678889999999999999999999999987652111          124556777899999999999999999999


Q ss_pred             cceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       169 ~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      +..+++.++...++||+++.++..+.++++|+.+++.+....|++..+...+..+...+.+++.
T Consensus       298 ~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~  361 (372)
T KOG0546|consen  298 TNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR  361 (372)
T ss_pred             cccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888887765543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.29  E-value=1.7e-07  Score=100.80  Aligned_cols=69  Identities=10%  Similarity=0.007  Sum_probs=63.9

Q ss_pred             cceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH---HHHhccchhhhhhHHHHhhhccccccc
Q 007725          141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA---LYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       141 ~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a---~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      ..+....+|+|+|.+|+++|+|++|+..|++||+++|+++.+   |||+|.||..+|++++|+++|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344456689999999999999999999999999999999965   999999999999999999999999997

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.27  E-value=3.4e-07  Score=96.71  Aligned_cols=161  Identities=11%  Similarity=-0.048  Sum_probs=113.8

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHH---HHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIG---EKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR  118 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~---~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~  118 (591)
                      +.-.....+.++....++++....|.+.....   ...... ..+....+...+.......+.....+..+|..+...|+
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence            33334445566666666665555565554322   110000 01111112222222334566667777888999999999


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc----hHHHHHhccchhhhh
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----VKALYRRGQAYKDIG  194 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~----~~a~~~rg~al~~lg  194 (591)
                      |++|+..|++++++.|+++.         ++..++.+|+..|++++|+..+++++.+.|..    ...|+.++.++...|
T Consensus       130 ~~~A~~~~~~al~~~p~~~~---------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G  200 (355)
T cd05804         130 YDRAEEAARRALELNPDDAW---------AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcH---------HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence            99999999999999998864         78899999999999999999999999987743    245778999999999


Q ss_pred             hHHHHhhhcccccccCCC
Q 007725          195 RLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       195 ~~eeAl~~lekAl~l~P~  212 (591)
                      ++++|+..|++++...|.
T Consensus       201 ~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         201 DYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             CHHHHHHHHHHHhccccC
Confidence            999999999999877764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.26  E-value=4.6e-07  Score=106.17  Aligned_cols=178  Identities=8%  Similarity=-0.034  Sum_probs=134.0

Q ss_pred             HhhhhhccCCCchhhhhhhhhcCCChhHHHHH-HHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccch
Q 007725           42 IATENMKNMRPEDLKCAAEQLTHTPPEEVAEI-GEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS  120 (591)
Q Consensus        42 ~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~-~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~  120 (591)
                      +++...++.+.++....++++....|...... ..........+...+...+++.+...+.....+..+|..+...|+|+
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence            36777777888887777787777777763221 11111111244556677677766555556677777788999999999


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl  200 (591)
                      +|++.|+++++.+|.++.         ++.-++.+|...+++++|++.+.+++.++|.+... ..++.++...+++.+|+
T Consensus       120 ~Aiely~kaL~~dP~n~~---------~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL  189 (822)
T PRK14574        120 QALALWQSSLKKDPTNPD---------LISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDAL  189 (822)
T ss_pred             HHHHHHHHHHhhCCCCHH---------HHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHH
Confidence            999999999999999976         56677899999999999999999999999985554 44455555577777799


Q ss_pred             hhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          201 SDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       201 ~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      ..|+++++++|++.++...+-.+...++-
T Consensus       190 ~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        190 QASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999988877776655544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.23  E-value=2e-07  Score=88.65  Aligned_cols=114  Identities=14%  Similarity=0.051  Sum_probs=94.6

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc---chHHHHH
Q 007725          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NVKALYR  185 (591)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---~~~a~~~  185 (591)
                      ..+.+|-...|..+...+.+.++....+.       ...+|+++|.++...++|++|+..|++++.+.|+   .+.+|++
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~   77 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTSGEK-------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYN   77 (168)
T ss_pred             cccccccccccccchhhhhHhccCCchhH-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHH
Confidence            34566777778888887766655444432       2558899999999999999999999999988776   3458999


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       186 rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +|.+|...|++++|+.+|++++.++|.+...+..++.+...+++
T Consensus        78 lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~  121 (168)
T CHL00033         78 IGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE  121 (168)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999988888888885553

>TIGR00540 hemY_coli hemY protein

Probab=98.22  E-value=7.2e-07  Score=97.16  Aligned_cols=133  Identities=14%  Similarity=-0.009  Sum_probs=108.3

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      +.+..+...+..+...|++++|++.+.++++..|++...      . ...-+...++..++...+++.++++++.+|+++
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~------~-~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~  333 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI------S-LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP  333 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc------h-hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence            467888889999999999999999999999998887530      0 011223333455788899999999999999999


Q ss_pred             --HHHHHhccchhhhhhHHHHhhhcc--cccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          181 --KALYRRGQAYKDIGRLEEAVSDLS--NAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       181 --~a~~~rg~al~~lg~~eeAl~~le--kAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                        ..+..+|.++++.|+|++|.++|+  ++++.+|++.. +..++.+..++++.+++...+++.+
T Consensus       334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              888899999999999999999999  68888898765 5589999999988777766666544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.22  E-value=1.3e-07  Score=76.85  Aligned_cols=85  Identities=32%  Similarity=0.385  Sum_probs=77.8

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +++++|.+|+..|++++|+..+++++++.|.+..+++.+|.++...+++++|+.+|++++.+.|.+..++..++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999988888888887777


Q ss_pred             hhccC
Q 007725          228 MKEDG  232 (591)
Q Consensus       228 ~~~~~  232 (591)
                      ++...
T Consensus        82 ~~~~~   86 (100)
T cd00189          82 GKYEE   86 (100)
T ss_pred             HhHHH
Confidence            66444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.21  E-value=2e-07  Score=103.12  Aligned_cols=149  Identities=18%  Similarity=0.130  Sum_probs=122.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  175 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l---  175 (591)
                      .+..+..++.+|..|...++|.+|+..|.+||.+....- .+.++-.+.++.|++.+|.+.|+|++|..+|++|++|   
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~-G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF-GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            667777888899999999999999999999999765221 1223335668999999999999999999999999986   


Q ss_pred             -----cccchHHHHHhccchhhhhhHHHHhhhcccccccCC-----CC---ChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP-----DD---GTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       176 -----dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P-----~~---~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                           .|.-+..+.+++.++...+++++|+.+|++++++.-     ++   +.++.+|+.+....++++++..-++..|+
T Consensus       316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence                 355677899999999999999999999999988742     23   46788999999999999988888887775


Q ss_pred             HHHHhh
Q 007725          243 EITEEV  248 (591)
Q Consensus       243 e~~e~~  248 (591)
                      ...+..
T Consensus       396 ~~~~~~  401 (508)
T KOG1840|consen  396 ILRELL  401 (508)
T ss_pred             HHHhcc
Confidence            544433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.21  E-value=2.2e-07  Score=103.40  Aligned_cols=129  Identities=12%  Similarity=0.024  Sum_probs=112.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      +...+.+...+|+..+..++|.++.++++..++++|-...         .|+++|.|+++++++..|+++|.+.+.++|+
T Consensus       481 n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~---------~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd  551 (777)
T KOG1128|consen  481 NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG---------TWFGLGCAALQLEKEQAAVKAFHRCVTLEPD  551 (777)
T ss_pred             hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh---------HHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            3445567777888888899999999999999999887655         7999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~  236 (591)
                      +..+|.|++.+|..+++-.+|...+++|++.+..+-.+|++.-.+...++..+.+...
T Consensus       552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A  609 (777)
T KOG1128|consen  552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA  609 (777)
T ss_pred             chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence            9999999999999999999999999999999988888888887776666655544333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.20  E-value=4.2e-07  Score=97.90  Aligned_cols=72  Identities=18%  Similarity=0.166  Sum_probs=65.6

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l  175 (591)
                      ..++.+..+.++|..|++.|+|++|+.+|+++|+++|+++.      ...+|+|+|.||..+|++++|+.++++||++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------A~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------AQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            47788999999999999999999999999999999999864      0135999999999999999999999999997

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.20  E-value=4.7e-07  Score=103.41  Aligned_cols=171  Identities=17%  Similarity=0.112  Sum_probs=134.9

Q ss_pred             CchhhhhhhhhcCCChhHHHHHHHH----hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007725           52 PEDLKCAAEQLTHTPPEEVAEIGEK----LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL  127 (591)
Q Consensus        52 pe~~~~a~e~l~~~~pee~~a~~~k----~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~  127 (591)
                      ++.+..+++......|..+.++...    ......+-+..+...+.++...+...+..+..+++-+|-.|+|..+..++.
T Consensus       215 ~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~  294 (1018)
T KOG2002|consen  215 SEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE  294 (1018)
T ss_pred             hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence            3344445555555666555544332    223344555566677777788888899999999999999999999999999


Q ss_pred             Hhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-hHHHHHhccchhhhhhHHHHhhhcccc
Q 007725          128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNA  206 (591)
Q Consensus       128 kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-~~a~~~rg~al~~lg~~eeAl~~lekA  206 (591)
                      .++....+.+.      ..-.|+++|.+|..+|+|++|..+|-+++..+|++ .-.++.+|+.|...|++++++.+|++.
T Consensus       295 ~ai~~t~~~~~------~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv  368 (1018)
T KOG2002|consen  295 HAIKNTENKSI------KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV  368 (1018)
T ss_pred             HHHHhhhhhHH------HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence            99987544332      33458899999999999999999999999999988 888999999999999999999999999


Q ss_pred             cccCCCCChHHHHHhHHHHHhh
Q 007725          207 HEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       207 l~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      ++..|++.+....|+.+.....
T Consensus       369 ~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  369 LKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             HHhCcchHHHHHHHHhHHHhhh
Confidence            9999999999988888776663

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.20  E-value=1.8e-07  Score=74.79  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=59.0

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (591)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg  187 (591)
                      +++.|+|++|+..|++++...|.++.         +++.++.||++.|++++|...+.+++..+|+++.++.-++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE---------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH---------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            35789999999999999999999876         7889999999999999999999999999999987776554

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.20  E-value=1.9e-06  Score=96.48  Aligned_cols=129  Identities=11%  Similarity=0.041  Sum_probs=100.4

Q ss_pred             hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc--------ccchhHHHHHHHhhhc--cccccccccceeee
Q 007725           77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE--------GRFSNALQKYLLAKKN--LQGIHSSEGRTLLL  146 (591)
Q Consensus        77 ~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~--------g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~  146 (591)
                      +.....+++..+...++++++..|+.+.++-.++.+++..        .+...+.+...+++.+  ++.++.        
T Consensus       350 ~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~--------  421 (517)
T PRK10153        350 LNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR--------  421 (517)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH--------
Confidence            3334566777888888888888888777777666555333        2344555666666554  333332        


Q ss_pred             eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                       +|.-++..+...|++++|+..+++|+.++| ++.+|+.+|.++...|++++|++.|++|+.++|.++.
T Consensus       422 -~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        422 -IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence             566677788888999999999999999999 5889999999999999999999999999999999874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.19  E-value=4.2e-07  Score=101.71  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=96.1

Q ss_pred             hhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh--hc
Q 007725           92 IDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK--VG  169 (591)
Q Consensus        92 ~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~--~~  169 (591)
                      +...-...+-.+..++..|..+..+|++.+|.+.|..|+.++|+++.         +..-+|.||.+.|+..-|..  .+
T Consensus       673 L~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~---------s~~Ala~~lle~G~~~la~~~~~L  743 (799)
T KOG4162|consen  673 LLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP---------SMTALAELLLELGSPRLAEKRSLL  743 (799)
T ss_pred             HHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH---------HHHHHHHHHHHhCCcchHHHHHHH
Confidence            33333445666778888889999999999999999999999888854         67778899999998777777  88


Q ss_pred             ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       170 ~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                      ..++++||.+.++||.+|.++..+|+.+.|.++|..|+++++.++.
T Consensus       744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999999999999999999999999887763

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.19  E-value=2.5e-07  Score=75.13  Aligned_cols=69  Identities=14%  Similarity=0.133  Sum_probs=62.9

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg  187 (591)
                      .+.|++.++|++|++++++++.++|.++.         +|..+|.||.++|+|.+|+++|+++++++|++..+...++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE---------LWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch---------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            45688999999999999999999999876         8999999999999999999999999999999988776554

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.18  E-value=3.8e-07  Score=103.55  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.|..-+...++..+..+.+++.+|.+|-.+|+..+++..+..|-.++|.++.         .|..++....++|.+.
T Consensus       154 ~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e---------~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  154 DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE---------LWKRLADLSEQLGNIN  224 (895)
T ss_pred             CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH---------HHHHHHHHHHhcccHH
Confidence            3444555555555556666666666666666666666666666666666666554         5666666666666666


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                      .|+-+|++||..+|.+.+.++++...|.+.|++..|...|.+.+.++|
T Consensus       225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            666666666666666666666666666666666666666666666666

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.16  E-value=2.6e-07  Score=97.68  Aligned_cols=144  Identities=10%  Similarity=-0.032  Sum_probs=102.1

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeeccccceeeecccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      ++++.+...+++.+...|.....+.. +..++..|++..+...+.+++.. .+.++.      ...++.+++.++...|+
T Consensus        57 g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          57 GDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPD------YWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCC------cHHHHHHHHHHHHHcCC
Confidence            44556666677777777777766664 54555555544444444444432 122222      23356678899999999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH----HHHHhHHHHHhhhccCC
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI----ADVLRDAKEILMKEDGH  233 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a----~~~L~~a~~~l~~~~~a  233 (591)
                      |++|+..|+++++++|+++.+++.+|.+|...|++++|+..+++++.+.|.+...    +..+..+....++..++
T Consensus       130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999999999999999999999999999998864432    33455555555554443

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.14  E-value=3.7e-07  Score=84.27  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=92.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH-
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-  181 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~-  181 (591)
                      +..++..|...++.|+|.+|++.|+......|..+.      -..+.+.++.+|++.++|++|+..+++-|+++|.+++ 
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            457889999999999999999999999888776543      2447789999999999999999999999999998865 


Q ss_pred             --HHHHhccchhhhhh---------------HHHHhhhcccccccCCCCChH
Q 007725          182 --ALYRRGQAYKDIGR---------------LEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       182 --a~~~rg~al~~lg~---------------~eeAl~~lekAl~l~P~~~~a  216 (591)
                        ++|.+|.+++.+..               ..+|+.+|++.+..-|+..-+
T Consensus        84 dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   84 DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence              79999999999877               777888888888888876543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.14  E-value=4.2e-07  Score=106.47  Aligned_cols=127  Identities=13%  Similarity=0.040  Sum_probs=103.4

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ..+++..|...+++.++..+..+..+..+...+...|++++|+.++++++  .|.+..       ...+..+|.+|...|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~-------~~~llalA~ly~~~g  116 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNIS-------SRGLASAARAYRNEK  116 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCC-------HHHHHHHHHHHHHcC
Confidence            34456678888888888888875444466677777899999999999999  333321       123344477999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a  216 (591)
                      +|++|++.|+++++++|+++.+++-++.+|...++.++|+..+++++..+|.+...
T Consensus       117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            99999999999999999999999999999999999999999999999999985543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.13  E-value=4.8e-07  Score=91.74  Aligned_cols=123  Identities=14%  Similarity=0.125  Sum_probs=101.5

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  179 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--  179 (591)
                      .+..++..|..++..|+|++|++.|++.+...|..+.      ...+.+++|.+|++.++|.+|+..+++.|+++|++  
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~------a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~  104 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN  104 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc
Confidence            4566888999999999999999999999999887653      23356899999999999999999999999999876  


Q ss_pred             -hHHHHHhccchhhhh------------------hHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhc
Q 007725          180 -VKALYRRGQAYKDIG------------------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKE  230 (591)
Q Consensus       180 -~~a~~~rg~al~~lg------------------~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~~  230 (591)
                       +.++|.+|.++..++                  ...+|+..|++.+...|+..   ++...+..++.++.+.
T Consensus       105 ~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866        105 IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence             457899998865443                  24678999999999999864   5677777777777543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.12  E-value=2.7e-07  Score=83.40  Aligned_cols=99  Identities=21%  Similarity=0.085  Sum_probs=86.6

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc---ch
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK---NV  180 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~---~~  180 (591)
                      ..+++.+..+-..|+.++|+.+|++++......+.      ...+++++|.+|+.+|++++|+..+++++...|+   +.
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~------~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~   75 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD------RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA   75 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH
Confidence            46788889999999999999999999997544432      3458899999999999999999999999998788   88


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccc
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~  208 (591)
                      ...+.++.++..+|++++|+..+-.++.
T Consensus        76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   76 ALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8888899999999999999999987764

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.10  E-value=1.5e-06  Score=98.71  Aligned_cols=121  Identities=12%  Similarity=0.079  Sum_probs=107.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+..+..++|.+|.+|++++|++.+.++|..+|..+.         +|+.+|.||..+|+.++|..++..|-.++|.+..
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~---------ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e  208 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI---------AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE  208 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh---------hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence            4778999999999999999999999999999998876         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      .|.+++.....+|+++.|+-+|.+|++.+|.+-+.+.+...+.++.++..
T Consensus       209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~  258 (895)
T KOG2076|consen  209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLK  258 (895)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHH
Confidence            99999999999999999999999999999998665555555555444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.09  E-value=4.1e-07  Score=86.64  Aligned_cols=98  Identities=20%  Similarity=0.177  Sum_probs=78.2

Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc----------cchhhhhhcceeeeccccchHHHHHhcc
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----------QYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg----------~y~eAi~~~~~AL~ldP~~~~a~~~rg~  188 (591)
                      |+.|.+.|+.....+|.+++         .++|-|.+++.+.          -+++||..|++||.|+|+...++|++|.
T Consensus         7 FE~ark~aea~y~~nP~Dad---------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD---------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH---------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHH---------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            67788999999999999876         5677777776653          4578999999999999999999999999


Q ss_pred             chhhhhh-----------HHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          189 AYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       189 al~~lg~-----------~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      ||..++.           |++|..+|++|+.++|++...+.-|+.+.+
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            9988765           888999999999999999988888877644

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.08  E-value=6.1e-07  Score=88.40  Aligned_cols=122  Identities=16%  Similarity=0.214  Sum_probs=96.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch-
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  180 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~-  180 (591)
                      .++.++..|..++..|+|.+|+..|++.+...|..+.      ...+.+.++.+|++.++|.+|+..+++.++..|+++ 
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~   77 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK   77 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence            3567899999999999999999999999999887664      244678999999999999999999999999999764 


Q ss_pred             --HHHHHhccchhhhh-----------hHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhh
Q 007725          181 --KALYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMK  229 (591)
Q Consensus       181 --~a~~~rg~al~~lg-----------~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~  229 (591)
                        .++|.+|.+++.+.           ...+|+..|+..+..-|+..   ++...+..+...+.+
T Consensus        78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~  142 (203)
T PF13525_consen   78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE  142 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH
Confidence              58999999976654           34589999999999999975   455666677666644

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.08  E-value=2.3e-06  Score=85.67  Aligned_cols=156  Identities=12%  Similarity=0.001  Sum_probs=125.4

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e  121 (591)
                      +....-..+.++...+..++....|.+........ ....-+++..+...+++.....+...+.|..+|..|-+.|++++
T Consensus        73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~  152 (257)
T COG5010          73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDE  152 (257)
T ss_pred             HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhH
Confidence            33333344455555556666655555543332221 11223567778899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      |...|.+++++.+.+|.         ++.|++..|+-.|+++.|..++.++...-+.+.....|++.+....|++++|..
T Consensus       153 Ar~ay~qAl~L~~~~p~---------~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         153 ARRAYRQALELAPNEPS---------IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             HHHHHHHHHHhccCCch---------hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            99999999999999987         799999999999999999999999988888899999999999999999999987


Q ss_pred             hccccc
Q 007725          202 DLSNAH  207 (591)
Q Consensus       202 ~lekAl  207 (591)
                      ...+-+
T Consensus       224 i~~~e~  229 (257)
T COG5010         224 IAVQEL  229 (257)
T ss_pred             hccccc
Confidence            766543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.08  E-value=2.2e-06  Score=88.64  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=68.8

Q ss_pred             eccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      +..|.+++||+.|+.+|+++|..+..|-.|+.++++++++..|+.+|..|++++|+...-+...+.++..++....+
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence            35577999999999999999999999999999999999999999999999999999887777777777777765543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.3e-06  Score=95.08  Aligned_cols=120  Identities=18%  Similarity=0.093  Sum_probs=94.3

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc-------ccchHH
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKA  182 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-------P~~~~a  182 (591)
                      |.+|.+.+++.-|...|..|+.+.|.+|-         .+.-+|.+++..+.|.+|+..|..++..-       +.+...
T Consensus       387 gmey~~t~n~kLAe~Ff~~A~ai~P~Dpl---------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~  457 (611)
T KOG1173|consen  387 GMEYMRTNNLKLAEKFFKQALAIAPSDPL---------VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT  457 (611)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCCcch---------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence            33444444555555555566666666654         67789999999999999999999998321       235567


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      +.|+|.++.+++++++|+..|+++|.+.|.+..++.-++.+.-.+++...+...+.
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            89999999999999999999999999999999999999999999988776544433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.07  E-value=6.2e-07  Score=85.75  Aligned_cols=91  Identities=15%  Similarity=0.157  Sum_probs=79.6

Q ss_pred             eeeccccceeeeccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      ..+++++|.+|...|+|++|+.+|++++++.|+.   +.+++++|.+|..+|++++|+..|++++.++|++...+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4478999999999999999999999999987763   5799999999999999999999999999999999999888988


Q ss_pred             HHHHhhhccCCCCC
Q 007725          223 AKEILMKEDGHHGP  236 (591)
Q Consensus       223 a~~~l~~~~~a~~~  236 (591)
                      +...+++...+...
T Consensus       115 ~~~~~g~~~~a~~~  128 (172)
T PRK02603        115 IYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHcCChHhHhhC
Confidence            88877665443333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.07  E-value=6.6e-07  Score=91.72  Aligned_cols=132  Identities=14%  Similarity=0.026  Sum_probs=115.6

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      +-+...|.+.+.--...++.+.++|-+++-.++|+-++.+|.+|+........      ...+|+|++.+..-.|++.-|
T Consensus       341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~------aaDvWYNlg~vaV~iGD~nlA  414 (478)
T KOG1129|consen  341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ------AADVWYNLGFVAVTIGDFNLA  414 (478)
T ss_pred             HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch------hhhhhhccceeEEeccchHHH
Confidence            34666777777777777889999999999999999999999999987654322      345899999999999999999


Q ss_pred             hhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       166 i~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      .++|+-+|.-||++..+|.|+|..-.+.|+.++|...|..|-.+.|+-.+...+|+.+
T Consensus       415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            9999999999999999999999999999999999999999999999877776666543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=2.3e-06  Score=85.24  Aligned_cols=121  Identities=15%  Similarity=0.045  Sum_probs=93.6

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      +......+-.|..+-..|+|++|+++|...|+-+|.+..         .|...-.+...+|+-.+||+....-++.-+.+
T Consensus        83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v---------~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D  153 (289)
T KOG3060|consen   83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV---------IRKRKLAILKAQGKNLEAIKELNEYLDKFMND  153 (289)
T ss_pred             CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence            555566677788888899999999999999988777643         45544555556777778888888878878888


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      .++|+-++..|+..|+|++|.-+|+..+-+.|.++-...+|+++.+-++.
T Consensus       154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            88888888888888888888888888888888888777777777776654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.03  E-value=3.1e-06  Score=82.64  Aligned_cols=119  Identities=19%  Similarity=0.062  Sum_probs=105.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....+..++..|+.|=..|-+.-|.-.|.++|.+.|.-|.         +++.+|..+...|+|+.|.+.|+.++++||.
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~  131 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  131 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------HHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence            3445778999999999999999999999999999999887         7888999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      +--++.|||.+++..|+|.-|..++.+-..-||+|+--.-.|-..+.+
T Consensus       132 y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k  179 (297)
T COG4785         132 YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK  179 (297)
T ss_pred             chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence            999999999999999999999999999999999987433333333333

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.98  E-value=5.8e-06  Score=89.82  Aligned_cols=131  Identities=19%  Similarity=0.044  Sum_probs=107.7

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP  177 (591)
                      ..++.+..+...+..+...|++++|.....++++. +.++.         +..-++.+  ..++++++++.+++.++.+|
T Consensus       258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~---------l~~l~~~l--~~~~~~~al~~~e~~lk~~P  325 (398)
T PRK10747        258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDER---------LVLLIPRL--KTNNPEQLEKVLRQQIKQHG  325 (398)
T ss_pred             HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHH---------HHHHHhhc--cCCChHHHHHHHHHHHhhCC
Confidence            34556778888999999999999999999999994 44432         11122222  44899999999999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +++..++.+|.++...++|++|.++|+++++++|++.. +..+..+.++.++.+++...|+..+
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998754 5679999999888777766666544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.98  E-value=5.6e-07  Score=79.00  Aligned_cols=94  Identities=18%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR  221 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~---~~a~~~L~  221 (591)
                      .++++|.++.+.|+|++|++.|.+++..+|++   ..+++.+|.++...|++++|+..|++++..+|++   ..++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            57789999999999999999999999999876   6799999999999999999999999999999986   46788888


Q ss_pred             HHHHHhhhccCCCCCccchH
Q 007725          222 DAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       222 ~a~~~l~~~~~a~~~~~~~i  241 (591)
                      .+...+++...+...+...+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~  103 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVI  103 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHH
Confidence            88887766655554444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=1.4e-06  Score=91.66  Aligned_cols=145  Identities=14%  Similarity=0.074  Sum_probs=103.6

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      ++.|..-..+.++.++..+.++.-+|+.+...++..+|+-.|+.|+.+.|++-.         +|-.+-.||+..|++.+
T Consensus       316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~---------~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE---------IYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH---------HHHHHHHHHHhhchHHH
Confidence            445566666677778889999999999999999999999999999999988754         56666666666666544


Q ss_pred             ------------------------------------hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725          165 ------------------------------------CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       165 ------------------------------------Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~  208 (591)
                                                          |.++|+++|+++|.+..+...++..+...|++.+++..+++++.
T Consensus       387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~  466 (564)
T KOG1174|consen  387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI  466 (564)
T ss_pred             HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence                                                56666777777777777777777777777777777777777776


Q ss_pred             cCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          209 VSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       209 l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      ..|+. ..+..|+.+.......+++...|.+
T Consensus       467 ~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  467 IFPDV-NLHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             hcccc-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            66553 3455555555544444444333333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=2.4e-06  Score=86.41  Aligned_cols=109  Identities=17%  Similarity=0.179  Sum_probs=97.2

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---h
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---V  180 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~  180 (591)
                      +.+++.+..+++.|+|.+|+..|..-|+..|+.+.      ...+++=||.||+.+|+|++|...|..+++-.|++   +
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~------~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp  215 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY------TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP  215 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc------cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence            44889999999999999999999999999888764      34578889999999999999999999999987765   5


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~  218 (591)
                      ++++.+|.++.++|+.++|...|++.++.-|+...+..
T Consensus       216 dallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         216 DALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            67999999999999999999999999999998776544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.90  E-value=3.8e-06  Score=90.65  Aligned_cols=114  Identities=18%  Similarity=0.132  Sum_probs=99.7

Q ss_pred             ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc---ccchhhhhhccee
Q 007725           96 MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT---KQYDECIKVGSEV  172 (591)
Q Consensus        96 l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l---g~y~eAi~~~~~A  172 (591)
                      ...-+..++..+..||..|..+.+..||..|.+++...|..         ..+|.|++.+|++.   ++.-.|+.+|..|
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------~~~l~nraa~lmkRkW~~d~~~AlrDch~A  437 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------IYLLENRAAALMKRKWRGDSYLALRDCHVA  437 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------hHHHHhHHHHHHhhhccccHHHHHHhHHhh
Confidence            34567788999999999999999999999999999997775         44899999999875   4677899999999


Q ss_pred             eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (591)
Q Consensus       173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~  218 (591)
                      |++||...++||+++.++..++++.+|+.+...+....|.+.....
T Consensus       438 lrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~  483 (758)
T KOG1310|consen  438 LRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQN  483 (758)
T ss_pred             ccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhh
Confidence            9999999999999999999999999999999888888886554333

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.90  E-value=3.4e-07  Score=75.49  Aligned_cols=64  Identities=22%  Similarity=0.344  Sum_probs=56.5

Q ss_pred             eeeccccceeeeccccchhhhhhcceeeecc-------ccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYD-------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-------P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      ..+|.|+|.+|+.+|+|++|+..|++++++.       |..+.+++++|.+|..+|++++|+.++++|+++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4478999999999999999999999999762       345889999999999999999999999999865

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.89  E-value=3.2e-06  Score=98.74  Aligned_cols=146  Identities=10%  Similarity=0.020  Sum_probs=111.6

Q ss_pred             hcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007725           62 LTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  140 (591)
Q Consensus        62 l~~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e  140 (591)
                      +.+.+|....++...+... ...+++.+..-....+.+.++....++-.|-.++..+++.++...  .++...+.+..+.
T Consensus        23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~  100 (906)
T PRK14720         23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA  100 (906)
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence            4567777777777665555 455666777777788888888888888888888888888888777  7777766654332


Q ss_pred             cceeee----------eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725          141 GRTLLL----------ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       141 ~~~l~~----------~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~  210 (591)
                      .-+.+.          .+++.+|.||.++|++++|...|+++|++||+|+.++.++|..|... ++++|+..+.+|+...
T Consensus       101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            222222          46677888888888888888888888888888888888888888888 8888888888887764

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.89  E-value=2.3e-06  Score=99.89  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=107.8

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc---------ccceeeeeeccccceeeeccccchhhhh
Q 007725           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS---------EGRTLLLACSLNSMSCYLKTKQYDECIK  167 (591)
Q Consensus        97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~---------e~~~l~~~~~~Nla~~y~~lg~y~eAi~  167 (591)
                      .|.+....++..+...+...+++++|++.+..++...|.....         ......-.+.+++........++ .+++
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve  103 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE  103 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence            4778888999999999999999999999999999999886541         11112222334556666666677 6677


Q ss_pred             hcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       168 ~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      ++...+...+.+-.+++.+|.||-.+|++++|...|+++++++|+|+.+..+++...... +.+++
T Consensus       104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720        104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence            776666668999999999999999999999999999999999999999999988876665 54443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=1.7e-05  Score=79.17  Aligned_cols=137  Identities=12%  Similarity=0.060  Sum_probs=118.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      .+..|...|..-+..++...-.++.+-..+..+|+-.+||+...+.++..+.|++         +|.-++..|+..|+|+
T Consensus       101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E---------AW~eLaeiY~~~~~f~  171 (289)
T KOG3060|consen  101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQE---------AWHELAEIYLSEGDFE  171 (289)
T ss_pred             chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH---------HHHHHHHHHHhHhHHH
Confidence            3445666677777777777777777777788889999999999999999999987         8999999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhh---hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIG---RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg---~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      .|+-+|++.+-+.|.++-++-++|.+++.+|   +++-|.++|+++++++|.+..++..+-.+-..+.+
T Consensus       172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998765   56779999999999999888888888777777653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.85  E-value=1.1e-05  Score=89.24  Aligned_cols=146  Identities=16%  Similarity=0.067  Sum_probs=124.0

Q ss_pred             hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        78 ~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      ......++..-.+-.++.++..++..+.+--+|-.+...|+-++|..+...++..++..+-         ||.-+|.+++
T Consensus        16 k~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v---------CwHv~gl~~R   86 (700)
T KOG1156|consen   16 KCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV---------CWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch---------hHHHHHHHHh
Confidence            3333445566666667777778888899999999999999999999999999998777654         9999999999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      ..++|++||++|+.||.++|+|...|+-++.....+++|+-....-.+.+++.|.+-.-|..+..+...++.+..
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999988777777777766665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.85  E-value=5.8e-07  Score=74.05  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=61.0

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld  176 (591)
                      +..+..+.++|.+++..|+|++|+.+|++++.+....+.  .....+.++.|+|.||..+|++++|++.+++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            456778999999999999999999999999988432221  122346789999999999999999999999998753

...

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.83  E-value=1.1e-05  Score=89.19  Aligned_cols=119  Identities=14%  Similarity=0.053  Sum_probs=108.4

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .++......|..++|...+......|.-.|.+++         .+.-.|..+..+|+-++|...+..+++.|+.+..+|+
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge---------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwH   79 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE---------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWH   79 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch---------hHHhccchhhcccchHHHHHHHHHHhccCcccchhHH
Confidence            4566666788999999999999999998888876         4555788888999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      .+|..+..-++|++|+++|+.|+.++|+|..++.-|..++.+++++++
T Consensus        80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999988775

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.82  E-value=3.4e-06  Score=86.57  Aligned_cols=126  Identities=17%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      ...++..+-+.|....+|++||+.-++...+.+..-.    -.++.+|.-++..+....+++.|+..+.+|+..||+++.
T Consensus       140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~----~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR  215 (389)
T COG2956         140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR----VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR  215 (389)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee
Confidence            4457777788899999999999998888887665432    224557777888888888999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCC-ChHHHHHhHHHHHhhhcc
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-GTIADVLRDAKEILMKED  231 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-~~a~~~L~~a~~~l~~~~  231 (591)
                      +-.-+|.++...|+|+.|++.|+++++.||++ +++...|.+|...+++..
T Consensus       216 Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         216 ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence            99999999999999999999999999999987 578888888888887654

>PRK11906 transcriptional regulator; Provisional

Probab=97.82  E-value=9.9e-06  Score=87.55  Aligned_cols=129  Identities=12%  Similarity=-0.055  Sum_probs=110.1

Q ss_pred             hhcCChHHHHHHHHhhhhcc---cccchHHHHHHHhcccccc---------cccchhHHHHHHHhhhcccccccccccee
Q 007725           77 LANASPEEIATMRARIDAQM---NYEFNAAKMLKKQGNELYS---------EGRFSNALQKYLLAKKNLQGIHSSEGRTL  144 (591)
Q Consensus        77 ~~~~~~~e~~~a~~~~~~~l---~~~~~~a~~lk~~Gn~~~~---------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l  144 (591)
                      +....++.++.|..-+.+.+   ...+..+.++.-++.+++.         ...-.+|+++-++|+++++.|+.      
T Consensus       266 ~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~------  339 (458)
T PRK11906        266 LYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGK------  339 (458)
T ss_pred             hhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHH------
Confidence            55556777788888888887   7777777777666665543         34557889999999999999976      


Q ss_pred             eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       145 ~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                         ++..+|.++.-.++++.|+..+++|+.++|+.+.+||.+|.++...|+.++|++.+++|++++|...
T Consensus       340 ---a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        340 ---ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             ---HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence               7788888888889999999999999999999999999999999999999999999999999999754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.82  E-value=1.8e-06  Score=80.19  Aligned_cols=129  Identities=17%  Similarity=0.084  Sum_probs=100.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---  179 (591)
                      +...+......+..+++..+...|.+.+.-.|..+.      -..+++.++.+++..|+|++|+..|+.++...|+.   
T Consensus        11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~   84 (145)
T PF09976_consen   11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY------AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELK   84 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHH
Confidence            334455555556788899888889999888777632      23467789999999999999999999999977654   


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      ..+.++++.+++..|+|++|+..++.. .-.+-.+.++..++.+....++..++...|+
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            568999999999999999999999773 3334456788888999888887776655554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=4e-06  Score=80.92  Aligned_cols=89  Identities=19%  Similarity=0.151  Sum_probs=78.1

Q ss_pred             ceeeeccccchhhhhhcceeeeccccc-----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          153 MSCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       153 a~~y~~lg~y~eAi~~~~~AL~ldP~~-----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      |.-+++.|+|++|...|.+||.+.|..     ...|.|||.|+.+++.|+.|+.++.+|++|+|.+..++.+...++.++
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            444678899999999999999999864     458999999999999999999999999999999999999989998888


Q ss_pred             hhccCCCCCccchH
Q 007725          228 MKEDGHHGPRGLLI  241 (591)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (591)
                      ..+..+..-|.+++
T Consensus       182 ek~eealeDyKki~  195 (271)
T KOG4234|consen  182 EKYEEALEDYKKIL  195 (271)
T ss_pred             hhHHHHHHHHHHHH
Confidence            77777777776544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.79  E-value=4.5e-06  Score=92.48  Aligned_cols=142  Identities=19%  Similarity=0.143  Sum_probs=109.6

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---  175 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l---  175 (591)
                      .++.+..+.+++..+...++|++|+.+|++++++..+.+. +.+......|.|+|.+|+.+|+|.+|.+.|.+||.+   
T Consensus       321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG-EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            4556677777888888888888888888888876552221 222235568899999999999999999999999976   


Q ss_pred             -----cccchHHHHHhccchhhhhhHHHHhhhcccccccC----CCC---ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          176 -----DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS----PDD---GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       176 -----dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~----P~~---~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                           ++.....+.++|.+|.+.+++.+|...|.+++.+-    |++   ...+.+|+.+...+++++.+.+-.+.++
T Consensus       400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                 35567889999999999999999988888887663    333   4578899999999998877665555444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=3e-05  Score=82.38  Aligned_cols=125  Identities=15%  Similarity=0.119  Sum_probs=74.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc----------ccc---------eeeeeeccc------cc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----------EGR---------TLLLACSLN------SM  153 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~----------e~~---------~l~~~~~~N------la  153 (591)
                      ....++.+..+++.|-...+...||++|.++..+.|.+|..          |..         +...+.-.|      ++
T Consensus       554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~  633 (840)
T KOG2003|consen  554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA  633 (840)
T ss_pred             HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence            34456666677777777777777777777777777777640          000         000000111      34


Q ss_pred             eeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       154 ~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      ..|+..+=++++|.++++|--+.|+..+-....+.|+.+.|+|..|++.|+..+..-|.+.+.+..|-++
T Consensus       634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            4555555566666666666666666666666666666666666666666666666666666555555444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=1.1e-05  Score=85.28  Aligned_cols=99  Identities=11%  Similarity=-0.037  Sum_probs=83.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+.|++.++.+.++|.+|+.++.++|.+.|++..         +++.+|.||+.+++|+.|+.+|.+|++++|.|-.+
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K---------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~  327 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK---------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAA  327 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHH
Confidence            456888999999999999999999999999999865         89999999999999999999999999999999888


Q ss_pred             HHHhccchhhhhhHHHH-hhhcccccccC
Q 007725          183 LYRRGQAYKDIGRLEEA-VSDLSNAHEVS  210 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeA-l~~lekAl~l~  210 (591)
                      ..-+..+..+..++.+. .+.|.+.+..-
T Consensus       328 ~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  328 RAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            77777777666665554 55555555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.72  E-value=4.7e-06  Score=93.52  Aligned_cols=128  Identities=16%  Similarity=-0.012  Sum_probs=111.4

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .|.-.+..+.+.+.-++|..|..++-.++|..+.         .|+-+|.++...|++.+|.+.|..|+.+||+++....
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~---------~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~  722 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS---------VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT  722 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH---------HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence            3444555666777778888899999998877654         7889999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhh--hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          185 RRGQAYKDIGRLEEAVS--DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~--~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      .+|.+|.+.|+-.-|..  .+..++++||.+.++|..|+.+.+++|+.+.+...+...+
T Consensus       723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            99999999999888887  9999999999999999999999999998877666655544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.71  E-value=1.8e-05  Score=90.89  Aligned_cols=161  Identities=14%  Similarity=0.029  Sum_probs=131.6

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------------c------
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------------E------  140 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------------e------  140 (591)
                      ...+.+-+...+.++++..+..+.++-.+|..|..--+...|-.||.+|.++++.+...              +      
T Consensus       470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            33446667777888888888888899999998888888889999999999998876541              0      


Q ss_pred             -------cceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          141 -------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       141 -------~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                             ........|..||..|++-+++..||..++.|++.+|.+..+|.-+|.+|.+.|+|..|++.|.+|..++|.+
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence                   0011223466799999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          214 GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       214 ~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      .-+.......+...++++++....+..+
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            7777777777777777776655555544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=1.7e-05  Score=83.63  Aligned_cols=134  Identities=13%  Similarity=0.107  Sum_probs=109.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc----------c---------------cceeeeeeccccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----------E---------------GRTLLLACSLNSM  153 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~----------e---------------~~~l~~~~~~Nla  153 (591)
                      -+.+...+-.+|.+++..|++.+|+-.|+++.-++|.....          +               ..+-...-|+--+
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~  307 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA  307 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence            45667788899999999999999999999999998865320          0               0001111233344


Q ss_pred             eeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       154 ~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      ..++..++|+.|+.+.+++|.++|++..+|.-.|.++..++++++|+-.|+.|..+.|-+-+++..|-++.-..++.++
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            5566789999999999999999999999999999999999999999999999999999988888888887666665544

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.66  E-value=6.5e-06  Score=69.05  Aligned_cols=74  Identities=27%  Similarity=0.351  Sum_probs=64.8

Q ss_pred             cccchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          159 TKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      .++|+.|+..|+++++.+|.  +...++.+|.||+..|+|++|+..+++ +.++|.+..++..++.+...+++++++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            57899999999999999995  577888899999999999999999999 889998888888899999998876554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.65  E-value=1e-05  Score=90.26  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=69.9

Q ss_pred             eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                      .+++.++++|...|+|++|++++++||...|..++.|+.+|.+|.+.|++.+|..+++.|-.+|+.|.-+........
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~  272 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence            366889999999999999999999999999999999999999999999999999999999999998876555544433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.64  E-value=1.4e-05  Score=89.37  Aligned_cols=122  Identities=9%  Similarity=0.071  Sum_probs=115.1

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      ..+++.+...++.++..++-....|+..|.++.+.+++..|+.+|.+++.+.|++..         .|+|++.+|.+.++
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e---------aWnNls~ayi~~~~  568 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE---------AWNNLSTAYIRLKK  568 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh---------hhhhhhHHHHHHhh
Confidence            457889999999999999999999999999999999999999999999999999866         89999999999999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      -.+|...+.+|++.+-.+++.|-|.-.+....|+|++|+..|.+.+.+.-+
T Consensus       569 k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  569 KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999999999999998877544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.58  E-value=1.5e-05  Score=89.32  Aligned_cols=130  Identities=12%  Similarity=-0.047  Sum_probs=98.7

Q ss_pred             HHHHHHHhccccccc---ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc--------ccchhhhhhcc
Q 007725          102 AAKMLKKQGNELYSE---GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGS  170 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~---g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l--------g~y~eAi~~~~  170 (591)
                      .+..++-.|..++.+   +.+..|+.+|++|++++|++..         +|.-++.||...        .+...+.+...
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~---------a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY---------AQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            344556667666544   4488999999999999999854         444555555433        23445566666


Q ss_pred             eeeec--cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          171 EVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       171 ~AL~l--dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +++.+  +|..+.+|..+|..+...|++++|...|++|+.++| +..++..++.+....++.+++...+...+
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~  480 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF  480 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            76664  788889999999999999999999999999999999 47889999999999888777666655544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.57  E-value=1.7e-05  Score=55.28  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=31.8

Q ss_pred             hcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       168 ~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4789999999999999999999999999999974

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.57  E-value=6.3e-06  Score=84.54  Aligned_cols=96  Identities=11%  Similarity=0.050  Sum_probs=80.8

Q ss_pred             eccccceee-eccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHH
Q 007725          148 CSLNSMSCY-LKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVL  220 (591)
Q Consensus       148 ~~~Nla~~y-~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~---~~a~~~L  220 (591)
                      .+++.+.++ ++.|+|++|+..|+..|+..|++   +.++|.+|.+|+..|+|++|+..|++++...|++   ++++..+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            456666665 56799999999999999999988   5899999999999999999999999999998886   4677777


Q ss_pred             hHHHHHhhhccCCCCCccchHHH
Q 007725          221 RDAKEILMKEDGHHGPRGLLIEE  243 (591)
Q Consensus       221 ~~a~~~l~~~~~a~~~~~~~i~e  243 (591)
                      +.+...+++..++...++.++..
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888777777777766644

>TIGR00540 hemY_coli hemY protein

Probab=97.55  E-value=3.6e-05  Score=83.88  Aligned_cols=125  Identities=13%  Similarity=0.050  Sum_probs=102.7

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ..++++.+.+.+.+..+..+.....+.-.|..+..+|+++.|..+|.++.+..|....        .+...++..++..|
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l--------~~~~~~a~l~l~~~  167 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI--------LVEIARTRILLAQN  167 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch--------HHHHHHHHHHHHCC
Confidence            3345666666666666666666677778889999999999999999999988766531        12334588888999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      +|+.|+..+++.++..|+++.+++.++.+|...|+|++|+..+++.++....+
T Consensus       168 ~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~  220 (409)
T TIGR00540       168 ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD  220 (409)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999998775443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.00018  Score=74.28  Aligned_cols=124  Identities=14%  Similarity=0.120  Sum_probs=104.5

Q ss_pred             hHHHHHHHHhhhhc-----ccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725           82 PEEIATMRARIDAQ-----MNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  156 (591)
Q Consensus        82 ~~e~~~a~~~~~~~-----l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y  156 (591)
                      ..+++.|.+-..+-     ..+....+..+..++..+....+++.|+..+.+|++-+|.+..         +-.-+|.++
T Consensus       154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------Asi~lG~v~  224 (389)
T COG2956         154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------ASIILGRVE  224 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------hhhhhhHHH
Confidence            34555555433322     3467888999999999999999999999999999999988854         566799999


Q ss_pred             eccccchhhhhhcceeeeccccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          157 LKTKQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       157 ~~lg~y~eAi~~~~~AL~ldP~~-~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      ...|+|..|++.++.+++.||++ +...-.+-.||..+|+.++.+..+.++.+..+...
T Consensus       225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~  283 (389)
T COG2956         225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD  283 (389)
T ss_pred             HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence            99999999999999999999987 45677789999999999999999999998887644

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.46  E-value=2.8e-05  Score=82.05  Aligned_cols=108  Identities=17%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             cchHHHHHHHhccccccccc--------------------chhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           99 EFNAAKMLKKQGNELYSEGR--------------------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~--------------------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      ..-...+++++||+|..+|+                    +..|+++|.+-|++.....+   .-....||-|+|..|+.
T Consensus       131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD---r~aqGRa~GnLGNTyYl  207 (639)
T KOG1130|consen  131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD---RLAQGRAYGNLGNTYYL  207 (639)
T ss_pred             HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh---HHhhcchhcccCceeee
Confidence            33456889999999987775                    35567777777776544322   12235589999999999


Q ss_pred             cccchhhhhhcceeeecccc------chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          159 TKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      +|+|+.||.+-..-|+|.-.      -..+|.|+|.||.-+|+++.|+++|++.+.+
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            99999999988877777543      3568999999999999999999999997765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=3.2e-05  Score=76.61  Aligned_cols=77  Identities=14%  Similarity=0.075  Sum_probs=70.0

Q ss_pred             cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      -|.+|+.-++|..||..|.+||.++|..+.+|-+|+.||+++++|+.+..++++|++++|+....+..|+.+.-...
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            46677788999999999999999999999999999999999999999999999999999998888888877755543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.45  E-value=5.1e-05  Score=81.99  Aligned_cols=125  Identities=10%  Similarity=0.073  Sum_probs=91.3

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      ++.+.+-+++-....++   ...-++..++..++..+|++...++|...|.+..         ++.-.+.++++.++|+.
T Consensus       185 ~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~---------LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  185 YDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE---------LLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHhcCCHHH
Confidence            33444444443333433   3334566666777788899999999988777754         56667888889999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~  221 (591)
                      |+..+++++++.|++.+.|+.++.+|..+|+|++|+..+..+--+.+++...+..+.
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~~  309 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRPV  309 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcCC
Confidence            999999999999999999999999999999999999888877655444444444333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.44  E-value=3e-05  Score=84.26  Aligned_cols=196  Identities=10%  Similarity=0.004  Sum_probs=137.8

Q ss_pred             hhhh-hccCCCchhhhhhhhhcCCChhHH-HH-HHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc
Q 007725           43 ATEN-MKNMRPEDLKCAAEQLTHTPPEEV-AE-IGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF  119 (591)
Q Consensus        43 A~e~-m~~~~pe~~~~a~e~l~~~~pee~-~a-~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y  119 (591)
                      +++. .+..+++......++.....|+.. .. ...--......+++.+...++...+..|+....++.++..|.+.|+|
T Consensus       124 aA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        124 AAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence            4444 667778888888877777766653 22 11111222334566788888888888999999999999999999999


Q ss_pred             hhHHHHHHHhhhcccccccc---------------------------------ccceeeeeeccccceeeeccccchhhh
Q 007725          120 SNALQKYLLAKKNLQGIHSS---------------------------------EGRTLLLACSLNSMSCYLKTKQYDECI  166 (591)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~---------------------------------e~~~l~~~~~~Nla~~y~~lg~y~eAi  166 (591)
                      ++|++.|.+..+....++..                                 ........++..++..+...|++++|.
T Consensus       204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~  283 (398)
T PRK10747        204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQ  283 (398)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99997777666543322110                                 000012224556688888999999999


Q ss_pred             hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +.++++++. |.+......++.+  ..++++++++.+++.++.+|+++..+..++.+....++..++...++..+
T Consensus       284 ~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al  355 (398)
T PRK10747        284 QIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL  355 (398)
T ss_pred             HHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999984 4455544444444  33889999999999999999999999999998888877777666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.41  E-value=3.9e-05  Score=52.85  Aligned_cols=34  Identities=38%  Similarity=0.628  Sum_probs=29.2

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      +++|+++|.+|..+|++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4688999999999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.40  E-value=0.00012  Score=81.26  Aligned_cols=136  Identities=13%  Similarity=0.056  Sum_probs=110.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      ++.++..-+..++.+++..-+.++..-...+....|+.|..+|.++....+..          .+|+.-+...+.++..+
T Consensus       599 dv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTe----------Rv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  599 DVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE----------RVWMKSANLERYLDNVE  668 (913)
T ss_pred             CcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc----------hhhHHHhHHHHHhhhHH
Confidence            34456666666677777777777777777777777888888888777755543          25777777778889999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +|+++|+++|+.-|++.+.|..+|+++...++.+.|.+.|...++..|+....|-.|..++++.++
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999899988888777654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=5e-05  Score=77.84  Aligned_cols=107  Identities=11%  Similarity=-0.029  Sum_probs=95.2

Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh---
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG---  194 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg---  194 (591)
                      ..+.-+...+..|..+|++.+         -|.-+|.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++...   
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~e---------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~  207 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAE---------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ  207 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCch---------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc
Confidence            356677788999999999976         68899999999999999999999999999999999999999987553   


Q ss_pred             hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      ...++...|++++.+||.|..+...|+...+.-++++.+
T Consensus       208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A  246 (287)
T COG4235         208 MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEA  246 (287)
T ss_pred             ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHH
Confidence            367899999999999999999999999998888777654

>PRK11906 transcriptional regulator; Provisional

Probab=97.34  E-value=2.8e-05  Score=84.11  Aligned_cols=117  Identities=11%  Similarity=-0.052  Sum_probs=94.0

Q ss_pred             HHhcccccccc---cchhHHHHHHHhh---hccccccccccceeeeeeccccceeeecc---------ccchhhhhhcce
Q 007725          107 KKQGNELYSEG---RFSNALQKYLLAK---KNLQGIHSSEGRTLLLACSLNSMSCYLKT---------KQYDECIKVGSE  171 (591)
Q Consensus       107 k~~Gn~~~~~g---~y~eAi~~Y~kAL---~l~p~~~~~e~~~l~~~~~~Nla~~y~~l---------g~y~eAi~~~~~  171 (591)
                      +-.|...+.++   ....|+.+|.+|+   .++|....         +|.-++.||...         .+-.+|++..++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~---------a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r  329 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE---------CYCLLAECHMSLALHGKSELELAAQKALELLDY  329 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH---------HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            44454443332   4577899999999   77766644         777788887654         244678899999


Q ss_pred             eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      |+++||.++.+++.+|.++...++++.|+..|++|+.++|+.+.++...+.+...-++...
T Consensus       330 Aveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~  390 (458)
T PRK11906        330 VSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE  390 (458)
T ss_pred             HHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999988887666655443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.34  E-value=0.0001  Score=69.70  Aligned_cols=108  Identities=10%  Similarity=0.052  Sum_probs=81.4

Q ss_pred             hcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007725           62 LTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  140 (591)
Q Consensus        62 l~~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e  140 (591)
                      +.+.+.++++..+..+-.. ..+.+..|..-++--..+.+-..+++..+|.++...++|++|+..|..+..+.+++|.  
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--  106 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--  106 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC--
Confidence            3445555555544432211 2233445555555555566667889999999999999999999999999999999987  


Q ss_pred             cceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       141 ~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                             .++..|.||+.+|+...|+..|..|+. .|.+
T Consensus       107 -------p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~  137 (165)
T PRK15331        107 -------PVFFTGQCQLLMRKAAKARQCFELVNE-RTED  137 (165)
T ss_pred             -------ccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence                   588999999999999999999999987 3443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.33  E-value=4.4e-05  Score=79.03  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=87.8

Q ss_pred             chHHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-
Q 007725          100 FNAAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-  177 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP-  177 (591)
                      ...+..+..+|..|... |++++|+++|.+|+++...+..   ......++.+++.++.++++|++|++.|++++...- 
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            34578899999999999 9999999999999998665432   112344788999999999999999999999876421 


Q ss_pred             -----cch-HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          178 -----KNV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       178 -----~~~-~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                           .++ +.++..+.|++..|++..|...|++...++|....
T Consensus       188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence                 123 35678888999999999999999999999997654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.29  E-value=8.1e-05  Score=54.76  Aligned_cols=42  Identities=29%  Similarity=0.368  Sum_probs=34.5

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      .+++.+|.+|..+|++++|++.|+++++.+|++..++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            567888888888888888888888888888888888877764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.27  E-value=0.0001  Score=76.83  Aligned_cols=109  Identities=18%  Similarity=0.078  Sum_probs=56.7

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec--c--ccchhhhhhcceeeeccccchHHHHH
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--T--KQYDECIKVGSEVLAYDAKNVKALYR  185 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~--l--g~y~eAi~~~~~AL~ldP~~~~a~~~  185 (591)
                      -.++++.+|++.|.+.++...+.+.+.           ...+++.++..  .  .+|.+|...|++.....+.++..+..
T Consensus       138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~-----------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng  206 (290)
T PF04733_consen  138 VQILLKMNRPDLAEKELKNMQQIDEDS-----------ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNG  206 (290)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHCCSCCH-----------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcH-----------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHH
Confidence            335556666666666666655554333           22333332222  2  24666666666655555555666666


Q ss_pred             hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          186 RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       186 rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      ++.|+..+|+|++|...++.|+..+|+++++..++..+...+++
T Consensus       207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            66666666666666666666666666666655555555444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0002  Score=78.68  Aligned_cols=156  Identities=13%  Similarity=0.109  Sum_probs=106.0

Q ss_pred             HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725           40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR  118 (591)
Q Consensus        40 ~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~  118 (591)
                      +-..-...++...+++.+.+.++....|++..+.+.++-++ +.+.|+.+.+....-. .........+.++.++|+.++
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~-~~~~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG-ALLVINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-hhhhcchhhHHHHHHHHHccc
Confidence            33344445566667777777778777788888888885444 4556666663222211 111111222678888899999


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-----------------------
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----------------------  175 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-----------------------  175 (591)
                      .++|+.+|. .++  +.++.         +..-++++++++++|++|+..|+..++-                       
T Consensus        95 ~Dealk~~~-~~~--~~~~~---------ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~  162 (652)
T KOG2376|consen   95 LDEALKTLK-GLD--RLDDK---------LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ  162 (652)
T ss_pred             HHHHHHHHh-ccc--ccchH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence            999999988 222  22211         3445788888999999999888877432                       


Q ss_pred             -------cc-cchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725          176 -------DA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       176 -------dP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~  208 (591)
                             .| +....+||.+.++...|+|.+|++.+++|+.
T Consensus       163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                   12 2566899999999999999999999999933

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.26  E-value=4.1e-05  Score=69.25  Aligned_cols=86  Identities=21%  Similarity=0.177  Sum_probs=73.2

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccc---cchHHHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDA---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLR  221 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP---~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~---~~~a~~~L~  221 (591)
                      +.++++.+|-.+|+.++|+..|+++|...+   .-..+++.+|.+|..+|++++|+..+++++...|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            567899999999999999999999998754   34779999999999999999999999999999888   666777777


Q ss_pred             HHHHHhhhccCC
Q 007725          222 DAKEILMKEDGH  233 (591)
Q Consensus       222 ~a~~~l~~~~~a  233 (591)
                      .+...+++.+++
T Consensus        83 l~L~~~gr~~eA   94 (120)
T PF12688_consen   83 LALYNLGRPKEA   94 (120)
T ss_pred             HHHHHCCCHHHH
Confidence            777777665543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.18  E-value=0.00014  Score=49.81  Aligned_cols=34  Identities=38%  Similarity=0.650  Sum_probs=30.2

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      +++|+.+|.++..+|++++|+.+|++++.++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.14  E-value=5.4e-05  Score=79.96  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=85.5

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc----
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----  177 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP----  177 (591)
                      .-.++-++||.||-.|+|+.||..-+.-|.+.....+   +.....+|.|+|.||.-+|+|+.|+++|.+++.+.-    
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~  270 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN  270 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence            4467788999999999999999987777776554332   111234799999999999999999999998865431    


Q ss_pred             --cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          178 --KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       178 --~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                        -.+...|-+|.+|.-+++++.||.++.+-+.+.-
T Consensus       271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              2466789999999999999999999998777654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.09  E-value=0.00028  Score=81.37  Aligned_cols=135  Identities=16%  Similarity=0.124  Sum_probs=105.4

Q ss_pred             hhhcccccchHHHHHHHhcccc-----cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhh
Q 007725           92 IDAQMNYEFNAAKMLKKQGNEL-----YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI  166 (591)
Q Consensus        92 ~~~~l~~~~~~a~~lk~~Gn~~-----~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi  166 (591)
                      +.+.+....+.+..+...++.+     +-+.+-..|+..|-+++++++..         .++|..+|..|+.--+...|.
T Consensus       442 ~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrld~~~---------apaf~~LG~iYrd~~Dm~RA~  512 (1238)
T KOG1127|consen  442 LPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRLDVSL---------APAFAFLGQIYRDSDDMKRAK  512 (1238)
T ss_pred             HHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcccch---------hHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444443     23445788999999999997775         458899999999999999999


Q ss_pred             hhcceeeeccccchH------------------------------------HHHHhccchhhhhhHHHHhhhcccccccC
Q 007725          167 KVGSEVLAYDAKNVK------------------------------------ALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       167 ~~~~~AL~ldP~~~~------------------------------------a~~~rg~al~~lg~~eeAl~~lekAl~l~  210 (591)
                      .+|++|.++|+.++.                                    .|.+||..|.+-+++..|+.+|+.|++.+
T Consensus       513 kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d  592 (1238)
T KOG1127|consen  513 KCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD  592 (1238)
T ss_pred             HHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC
Confidence            999999999986644                                    35568999999999999999999999999


Q ss_pred             CCCChHHHHHhHHHHHhhhccCCCC
Q 007725          211 PDDGTIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       211 P~~~~a~~~L~~a~~~l~~~~~a~~  235 (591)
                      |++...|..|+++.-.-+.+..+..
T Consensus       593 PkD~n~W~gLGeAY~~sGry~~AlK  617 (1238)
T KOG1127|consen  593 PKDYNLWLGLGEAYPESGRYSHALK  617 (1238)
T ss_pred             chhHHHHHHHHHHHHhcCceehHHH
Confidence            9999999999999888777665433

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.04  E-value=0.0001  Score=70.48  Aligned_cols=88  Identities=16%  Similarity=0.115  Sum_probs=65.9

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccc----------cchhHHHHHHHhhhccccccccccceeeeeeccccce
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEG----------RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS  154 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g----------~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~  154 (591)
                      ++.+.+.+......+|..++.|.+-|..+....          -+++|+..|++||.++|+...         ++.|+|.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd---------Alw~lGn   77 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD---------ALWCLGN   77 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH---------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH---------HHHHHHH
Confidence            556677777777778888998888888775443          457899999999999999876         7899999


Q ss_pred             eeecccc-----------chhhhhhcceeeeccccchH
Q 007725          155 CYLKTKQ-----------YDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       155 ~y~~lg~-----------y~eAi~~~~~AL~ldP~~~~  181 (591)
                      +|..++.           |++|..+|++|..++|+|..
T Consensus        78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            9987653           78888888888888998764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.01  E-value=0.00046  Score=71.89  Aligned_cols=126  Identities=13%  Similarity=0.146  Sum_probs=96.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      .++.|.+.+....+...+..-.....+.+.+..|  +|.+|.-.|++..+..+..+.         .++.++.|++.+|+
T Consensus       146 R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~---------~lng~A~~~l~~~~  216 (290)
T PF04733_consen  146 RPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK---------LLNGLAVCHLQLGH  216 (290)
T ss_dssp             -HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH---------HHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH---------HHHHHHHHHHHhCC
Confidence            3445666666666666666666666665655555  699999999998776554433         67789999999999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhhhhH-HHHhhhcccccccCCCCChHHH
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDGTIAD  218 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~-eeAl~~lekAl~l~P~~~~a~~  218 (591)
                      |++|.+.+.+++..+|+++.++.|+..+...+|+. +.+.+++.+....+|+++-+..
T Consensus       217 ~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~  274 (290)
T PF04733_consen  217 YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD  274 (290)
T ss_dssp             HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence            99999999999999999999999999999999998 6677788888888999875543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.98  E-value=0.0014  Score=66.57  Aligned_cols=124  Identities=9%  Similarity=-0.049  Sum_probs=92.6

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc------------------c
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK------------------Q  161 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg------------------~  161 (591)
                      +-...+.+.+|..+++.++|.+|+..|++.++..|+++.      ...+++.+|.|+..++                  .
T Consensus        66 ~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~------~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~  139 (243)
T PRK10866         66 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQH  139 (243)
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc------hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHH
Confidence            334556789999999999999999999999999999986      3456777887764443                  1


Q ss_pred             chhhhhhcceeeeccccchH---H--------------HHHhccchhhhhhHHHHhhhcccccccCCCCCh---HHHHHh
Q 007725          162 YDECIKVGSEVLAYDAKNVK---A--------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLR  221 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~---a--------------~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~---a~~~L~  221 (591)
                      -.+|+..+++.|+.-|+..-   +              -+..|.-|.+.|+|..|+.-++..++.-|+.+.   +...+.
T Consensus       140 ~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~  219 (243)
T PRK10866        140 ARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME  219 (243)
T ss_pred             HHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            35788999999999886522   2              223566688889999999999999998887654   444555


Q ss_pred             HHHHHhhh
Q 007725          222 DAKEILMK  229 (591)
Q Consensus       222 ~a~~~l~~  229 (591)
                      ++...++.
T Consensus       220 ~ay~~lg~  227 (243)
T PRK10866        220 NAYRQLQL  227 (243)
T ss_pred             HHHHHcCC
Confidence            55555443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.94  E-value=0.00073  Score=75.15  Aligned_cols=120  Identities=13%  Similarity=-0.035  Sum_probs=103.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+....+.....++.++|+++++++|+..|.++.         +|.-+|++|-+.++.+.|.+.|...++..|...-.
T Consensus       651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K---------l~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL  721 (913)
T KOG0495|consen  651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK---------LWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL  721 (913)
T ss_pred             chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH---------HHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence            445566667777788889999999999999888866         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      |..++..--..|+...|...|+++.-.+|++...|-..-..+.+.+...
T Consensus       722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~  770 (913)
T KOG0495|consen  722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE  770 (913)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999999999888777666666655443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.00077  Score=74.27  Aligned_cols=122  Identities=15%  Similarity=0.158  Sum_probs=96.5

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ..++++.+.....+.+...++...+++..-.++.+.++|++|+..-+    ..+.+..      .....+-.+.|+++++
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ik----k~~~~~~------~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIK----KNGALLV------INSFFFEKAYCEYRLN   93 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH----hcchhhh------cchhhHHHHHHHHHcc
Confidence            34577778877778888888889999999999999999999984333    2222110      0112257899999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                      +.++|+.+++   .+++...+.+..+|++++++++|++|+..|+..++.+-++.+
T Consensus        94 k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   94 KLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             cHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            9999999999   557888889999999999999999999999998877666543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.88  E-value=0.00025  Score=76.63  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=97.9

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (591)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~  192 (591)
                      +...++|+.|+..|++....+|..            ..-++.+|+..++..+|++.+.++|+.+|.+...+...+..+..
T Consensus       179 l~~t~~~~~ai~lle~L~~~~pev------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  179 LSLTQRYDEAIELLEKLRERDPEV------------AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS  246 (395)
T ss_pred             HhhcccHHHHHHHHHHHHhcCCcH------------HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            344678999999999988876543            44588888889999999999999999999999999999999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       193 lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      .++++.|+..++++..+.|.+...|..|.++.-.+++++.+
T Consensus       247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.87  E-value=0.00011  Score=54.15  Aligned_cols=42  Identities=24%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      +|+.+|.+|..+|++++|++.|+++|+.+|+++.+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            577899999999999999999999999999999999998864

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.83  E-value=0.00069  Score=66.73  Aligned_cols=126  Identities=16%  Similarity=0.058  Sum_probs=93.9

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-----------ccchhhh
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----------KQYDECI  166 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-----------g~y~eAi  166 (591)
                      ..+-...+++.+|..+++.|+|.+|+..|++.+...|.++.      ...+++.+|.|++..           +...+|+
T Consensus        37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~  110 (203)
T PF13525_consen   37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK------ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI  110 (203)
T ss_dssp             TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT------HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------hhhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence            34455678899999999999999999999999999999875      244677788876554           4456899


Q ss_pred             hhcceeeeccccchHH-----------------HHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHH
Q 007725          167 KVGSEVLAYDAKNVKA-----------------LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEI  226 (591)
Q Consensus       167 ~~~~~AL~ldP~~~~a-----------------~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~  226 (591)
                      ..|+..|+.-|++..+                 -+..|.-|.+.|+|..|+..++.+++.-|+..   +++..+.++..+
T Consensus       111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~  190 (203)
T PF13525_consen  111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYK  190 (203)
T ss_dssp             HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence            9999999998875322                 23468888999999999999999999999865   455566666666


Q ss_pred             hhh
Q 007725          227 LMK  229 (591)
Q Consensus       227 l~~  229 (591)
                      ++.
T Consensus       191 l~~  193 (203)
T PF13525_consen  191 LGL  193 (203)
T ss_dssp             TT-
T ss_pred             hCC
Confidence            653

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0005  Score=71.22  Aligned_cols=81  Identities=20%  Similarity=0.151  Sum_probs=69.9

Q ss_pred             ccccceeeeccccchhhhhhcceeeecccc----chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAK----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                      |.--|.-|++.++|..|+..|+++|+....    ++..|+||+.|.+.+|+|..|+.|+.+|+.++|.+..++.+=..|.
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            344567788999999999999999987543    6778999999999999999999999999999999988877777776


Q ss_pred             HHhhh
Q 007725          225 EILMK  229 (591)
Q Consensus       225 ~~l~~  229 (591)
                      ..|..
T Consensus       164 ~eLe~  168 (390)
T KOG0551|consen  164 LELER  168 (390)
T ss_pred             HHHHH
Confidence            66665

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.75  E-value=0.0011  Score=71.76  Aligned_cols=139  Identities=16%  Similarity=0.103  Sum_probs=104.3

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHh-hhccccccccccceeeeeeccccceeeeccccchhh
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kA-L~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      .++.+..-......+.+.++.-+.+.+|-.|+|..|.+..... |...+... ....-....+|+|+|.++++++.|..+
T Consensus       224 ~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~-~T~q~~~cif~NNlGcIh~~~~~y~~~  302 (696)
T KOG2471|consen  224 LAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT-ITPQLSSCIFNNNLGCIHYQLGCYQAS  302 (696)
T ss_pred             HHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc-ccchhhhheeecCcceEeeehhhHHHH
Confidence            3333333333344566778888899999999999999886643 22111100 011123456789999999999999999


Q ss_pred             hhhcceeee-c--------cc---------cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          166 IKVGSEVLA-Y--------DA---------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       166 i~~~~~AL~-l--------dP---------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      +.+|.+||+ .        .|         ..-..+||.|..|...|+.-+|..+|.++.+.--.++.+|-+|.+|.-.
T Consensus       303 ~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  303 SVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            999999995 1        11         3466899999999999999999999999999998999999999998543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.71  E-value=0.00036  Score=67.06  Aligned_cols=124  Identities=12%  Similarity=0.114  Sum_probs=98.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc--c
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--N  179 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~  179 (591)
                      +...+.+|+.+...|+|.+|..+|.+++.- .-.++         ..++.++.+.+..+++..|...++...+.+|.  .
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~---------a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~  159 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA---------AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS  159 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH---------HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence            456788999999999999999999999873 22333         26788999999999999999999999999884  5


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCC
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGP  236 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~  236 (591)
                      ++.....|.+|..+|++++|...|+.++...|+. .+...+.+-..+.++..++...
T Consensus       160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQ  215 (251)
T ss_pred             CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHH
Confidence            7788888999999999999999999999888763 3444555544444443333333

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.71  E-value=0.00013  Score=74.00  Aligned_cols=96  Identities=16%  Similarity=0.089  Sum_probs=82.7

Q ss_pred             ccccceeeeccccchhhhhhcceeeeccccc---hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhH
Q 007725          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRD  222 (591)
Q Consensus       149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~  222 (591)
                      +||.+.-+++.|+|.+|...|..-|+..|+.   +.++|++|.+++.+|+|++|...|..+++-.|+++   +....|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5788888899999999999999999988864   77999999999999999999999999999988764   66788888


Q ss_pred             HHHHhhhccCCCCCccchHHHH
Q 007725          223 AKEILMKEDGHHGPRGLLIEEI  244 (591)
Q Consensus       223 a~~~l~~~~~a~~~~~~~i~e~  244 (591)
                      +...+++...+...++.++.+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHC
Confidence            8888888777776666666443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.67  E-value=0.00065  Score=68.50  Aligned_cols=124  Identities=14%  Similarity=0.164  Sum_probs=99.9

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      -+..|++.|...++.|+|.+|++.|++.....|..+.      ...+.+.++.++++.++|++|+...++=|++.|.++.
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n  106 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN  106 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence            4678999999999999999999999999988777654      2446778999999999999999999999999997754


Q ss_pred             ---HHHHhccchhh--------hhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhcc
Q 007725          182 ---ALYRRGQAYKD--------IGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKED  231 (591)
Q Consensus       182 ---a~~~rg~al~~--------lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~~~  231 (591)
                         ++|-+|.+++.        ...-.+|+..++..+..-|+..   ++...+..+...+..++
T Consensus       107 ~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E  170 (254)
T COG4105         107 ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE  170 (254)
T ss_pred             hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence               67778877654        3445678999999999999863   56666666666665443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.66  E-value=0.0003  Score=63.92  Aligned_cols=61  Identities=25%  Similarity=0.306  Sum_probs=55.8

Q ss_pred             ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      |.++...|+.+.|++.|.++|.+.|.++.+|.||+.+|.-.|+.++|+.++++|+++.-+.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            3445578999999999999999999999999999999999999999999999999997654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.59  E-value=0.0011  Score=45.40  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  136 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~  136 (591)
                      ++.+.++|..++..|+|++|+.+|+++|+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999998863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.55  E-value=0.0013  Score=74.97  Aligned_cols=125  Identities=26%  Similarity=0.427  Sum_probs=108.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec--cccchhhhhhcceeeecc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--TKQYDECIKVGSEVLAYD  176 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~--lg~y~eAi~~~~~AL~ld  176 (591)
                      ....+..++..||.+|..++|.+|.-.|..++.+.|.+..     ....+..|.+.||..  +++|..++..|+-++...
T Consensus        49 ~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~  123 (748)
T KOG4151|consen   49 FLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----VVATLRSNQASCYMQLGLGEYPKAIPECELALESQ  123 (748)
T ss_pred             HHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhcc
Confidence            4445667899999999999999999999999999996532     356678899988865  569999999999999999


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      |...++++.|+.+|..+++++-|++++.-....+|.+..+...+.+++..+.
T Consensus       124 p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~  175 (748)
T KOG4151|consen  124 PRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLE  175 (748)
T ss_pred             chHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999887776666666663

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.55  E-value=0.0027  Score=67.33  Aligned_cols=122  Identities=16%  Similarity=0.083  Sum_probs=95.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +......+..+...|++++|.+....+++..-+..           ++.+-- .++.+++..-++..++.++..|+++..
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L  330 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLL  330 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----------HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhH
Confidence            44455566678889999999999999988643321           111111 247789999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPR  237 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~  237 (591)
                      ++.+|..+++.+.|.+|..+|+.|++..|.. ..+..++.+..++++...+.+.+
T Consensus       331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A~~~r  384 (400)
T COG3071         331 LSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEAEQVR  384 (400)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHHHHHH
Confidence            9999999999999999999999999998864 45788888888887655444333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.54  E-value=0.0015  Score=44.55  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccc
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGI  136 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~  136 (591)
                      ++.+..+|..++..|+|++|+++|++++.++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4578999999999999999999999999998864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.51  E-value=0.00026  Score=49.27  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             HHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725          125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (591)
Q Consensus       125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~  167 (591)
                      +|++||+++|+++.         +|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~---------a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAE---------AYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHH---------HHHHHHHHHHHCcCHHhhcC
Confidence            48999999999977         89999999999999999974

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.48  E-value=0.00025  Score=63.19  Aligned_cols=103  Identities=21%  Similarity=0.320  Sum_probs=78.2

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccc---eeeeeeccccceeeeccccchhhhhhcceeeec-------
Q 007725          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGR---TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------  175 (591)
Q Consensus       106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~---~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-------  175 (591)
                      ....|...+..|-|++|...|.+|.+.....|..|.-   -.-..|+.-++.++..+|+|++++...+++|.+       
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL   91 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL   91 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence            3445566778899999999999999988877753322   233557888999999999999999999888864       


Q ss_pred             cc----cchHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725          176 DA----KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       176 dP----~~~~a~~~rg~al~~lg~~eeAl~~lekAl~  208 (591)
                      +.    -+..+.|+|+.++..+|+.++|+..|+.+.+
T Consensus        92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            22    3577889999999999999999999987754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.48  E-value=0.00033  Score=64.75  Aligned_cols=101  Identities=19%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             HHhcccccccccchhHHHHHHHhhhcccccccc-------------ccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS-------------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~-------------e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL  173 (591)
                      ...|......++...++..|.+++.+..++.-.             .....+..++..++.++...|+|++|+..|++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            333444455556666666666666655433210             0112233355567777778888888888888888


Q ss_pred             eccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       174 ~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      .++|.+-.+|..+-.+|...|++.+|+..|+++.
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            8888888888888888888888888888887663

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.41  E-value=0.0023  Score=49.31  Aligned_cols=49  Identities=18%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +.+|.++.+++++|+|++|..+++.+|+++|+|..+......++.++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            5689999999999999999999999999999999999988888887754

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.38  E-value=0.0053  Score=60.47  Aligned_cols=90  Identities=12%  Similarity=0.028  Sum_probs=80.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      -..-|..++.+.+..+|+.+..+.-+|..+...|+|+.|.+.|.-.++++|...         ++..|||..++-.|+|.
T Consensus        80 L~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~---------Ya~lNRgi~~YY~gR~~  150 (297)
T COG4785          80 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN---------YAHLNRGIALYYGGRYK  150 (297)
T ss_pred             HHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch---------HHHhccceeeeecCchH
Confidence            345677888999999999999999999999999999999999999999988864         47899999999999999


Q ss_pred             hhhhhcceeeeccccchHH
Q 007725          164 ECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a  182 (591)
                      -|.+++.+--.-||+++--
T Consensus       151 LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         151 LAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             hhHHHHHHHHhcCCCChHH
Confidence            9999998888888887643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.0029  Score=63.84  Aligned_cols=112  Identities=18%  Similarity=0.192  Sum_probs=89.6

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      +..+.....+|....+-|+.+.|..+|++.-+.......   -........|.+.+|+-.++|..|...|++.+..||.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~---~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~  285 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG---LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN  285 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc---cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc
Confidence            556667777888888888888888887744322111100   00123467789999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      +.+..+.+.|+..+|+..+|++.++.++.++|...
T Consensus       286 ~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  286 AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            99999999999999999999999999999999753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00065  Score=70.80  Aligned_cols=111  Identities=12%  Similarity=0.061  Sum_probs=80.1

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch------
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV------  180 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~------  180 (591)
                      .-+|.++|+.|+|++|+..|+-+-+.+..+         ..+++|++.|++-+|.|.+|.....++-+- |-..      
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~---------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~-pL~~RLlfhl  130 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAP---------AELGVNLACCKFYLGQYIEAKSIAEKAPKT-PLCIRLLFHL  130 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCC---------cccchhHHHHHHHHHHHHHHHHHHhhCCCC-hHHHHHHHHH
Confidence            346788999999999999999887743333         238999999999999999998877766431 1111      


Q ss_pred             ---------------------HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          181 ---------------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       181 ---------------------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                                           +-...++.+++-.-+|.+|++.|++.+.-+|++-.+.-.+..|..++
T Consensus       131 ahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKl  198 (557)
T KOG3785|consen  131 AHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKL  198 (557)
T ss_pred             HHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhc
Confidence                                 11223455566667889999999999988888766656666665554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.30  E-value=0.00026  Score=73.31  Aligned_cols=128  Identities=19%  Similarity=0.206  Sum_probs=89.7

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc-----
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-----  176 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-----  176 (591)
                      .+..+..-|+.+...++|.+|..+|.++..+......   ...-..+|.+.+.||.+. ++.+|+..|++|+.+-     
T Consensus        34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~  109 (282)
T PF14938_consen   34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR  109 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence            4567777888888999999999999999886543211   111234677888888666 9999999999999873     


Q ss_pred             c-cchHHHHHhccchhhh-hhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCC
Q 007725          177 A-KNVKALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       177 P-~~~~a~~~rg~al~~l-g~~eeAl~~lekAl~l~P~~~------~a~~~L~~a~~~l~~~~~a  233 (591)
                      + .-++++.++|.+|... +++++|+++|++|+.+--...      .+...++.+...++++.++
T Consensus       110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen  110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            2 3477899999999998 999999999999998743222      2344444555555444433

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.28  E-value=0.0022  Score=59.47  Aligned_cols=83  Identities=8%  Similarity=0.048  Sum_probs=67.5

Q ss_pred             hhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-----------
Q 007725           93 DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------  161 (591)
Q Consensus        93 ~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-----------  161 (591)
                      +....+.+-...+.+.++..+|+.++|.+|+..|++-|++.|.++.      ...+++-+|.|++++..           
T Consensus        37 ~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~------vdYa~Y~~gL~~~~~~~~~~~~~~~~dr  110 (142)
T PF13512_consen   37 DTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN------VDYAYYMRGLSYYEQDEGSLQSFFRSDR  110 (142)
T ss_pred             HhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC------ccHHHHHHHHHHHHHhhhHHhhhccccc
Confidence            3334445556678899999999999999999999999999999986      46688889999988876           


Q ss_pred             ----chhhhhhcceeeeccccchH
Q 007725          162 ----YDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       162 ----y~eAi~~~~~AL~ldP~~~~  181 (591)
                          ...|..+|+++|+.-|++.-
T Consensus       111 D~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen  111 DPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             CcHHHHHHHHHHHHHHHHCcCChh
Confidence                77788888888877776643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0055  Score=62.83  Aligned_cols=65  Identities=26%  Similarity=0.270  Sum_probs=56.9

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA  174 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~  174 (591)
                      ..+..+.+.|..+|+.|+|++|++.|..|++..-..|.         +-+|++.|+++.++|..|++...+.|+
T Consensus       142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl---------lAYniALaHy~~~qyasALk~iSEIie  206 (459)
T KOG4340|consen  142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL---------LAYNLALAHYSSRQYASALKHISEIIE  206 (459)
T ss_pred             CccchhccchheeeccccHHHHHHHHHHHHhhcCCCch---------hHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            45678899999999999999999999999998666654         678999999999999999988777664

>PRK10941 hypothetical protein; Provisional

Probab=96.22  E-value=0.0011  Score=68.10  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725          143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  219 (591)
Q Consensus       143 ~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~  219 (591)
                      .++.....|+-.+|.+.++|+.|+.++++.+.++|+++.-+--||.+|.++|.+..|+.||+..++..|+++.+...
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i  254 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence            34555778999999999999999999999999999999999999999999999999999999999999998865443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.14  E-value=0.004  Score=57.46  Aligned_cols=122  Identities=23%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccce-eeeccccchhhhhhcceeeecc
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYD  176 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~-~y~~lg~y~eAi~~~~~AL~ld  176 (591)
                      ........+...+..+...++|..++..+.+++...+....         ....... +|...++++.|+..+.+++.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  160 (291)
T COG0457          90 LLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---------AEALLALGALYELGDYEEALELYEKALELD  160 (291)
T ss_pred             hccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            45556667777788888888888888888888876555421         1222333 7888888888888888887777


Q ss_pred             c---cchHHHHHhccchhhhhhHHHHhhhcccccccCCC-CChHHHHHhHHHHHhh
Q 007725          177 A---KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-DGTIADVLRDAKEILM  228 (591)
Q Consensus       177 P---~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~-~~~a~~~L~~a~~~l~  228 (591)
                      |   .....++.++..+...+++++|+..+.+++...+. ...++..+..+....+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            6   46677777777777888888888888888888887 4666666666655544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.12  E-value=0.0014  Score=44.91  Aligned_cols=34  Identities=35%  Similarity=0.677  Sum_probs=28.8

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      +++|+.+|.+|..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3678999999999999999999999999988853

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.0077  Score=61.81  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=83.8

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHH----------------HHhhhccccccc-------c
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY----------------LLAKKNLQGIHS-------S  139 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y----------------~kAL~l~p~~~~-------~  139 (591)
                      .++..+...|.+-....|+..++..-.+..+++.+.|.+|++..                +.||.+..++-.       .
T Consensus        58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ  137 (459)
T KOG4340|consen   58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ  137 (459)
T ss_pred             HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh
Confidence            34555555555555556666666666666677777777776653                223332222110       0


Q ss_pred             ccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007725          140 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (591)
Q Consensus       140 e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekA  206 (591)
                      -..+--+....|.|-..++.|+|++|++.|..|++..--++-.-|+.+.|+++.++|+.|+++....
T Consensus       138 lp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  138 LPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             ccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            0111224467889999999999999999999999998888888999999999999999998765443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=95.87  E-value=0.0029  Score=68.66  Aligned_cols=110  Identities=11%  Similarity=0.093  Sum_probs=95.0

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      ...+..|..-|.++++..+..+.++-+.+..+++.++|..|+.-..+||+++|..         ..+|+.+|.++.++++
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~---------~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY---------IKAYVRRGTAVMALGE   87 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh---------hheeeeccHHHHhHHH
Confidence            3567888888999999999999999999999999999999999999999998776         4499999999999999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhhh--hHHHHh
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG--RLEEAV  200 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg--~~eeAl  200 (591)
                      |.+|..+|+....+.|+.+++.--...|-....  +|+.|+
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai  128 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI  128 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999988777766654333  355444

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.87  E-value=0.0016  Score=69.20  Aligned_cols=103  Identities=13%  Similarity=0.227  Sum_probs=79.2

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccc---------cccceeeeeeccccceeeeccccchhhhhhcceeee
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS---------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA  174 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~---------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~  174 (591)
                      +.....+..+|++++|..|+-.|..+|+++..-..         .+...+...+-..+..||+++++.+.|+....+.|.
T Consensus       177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~  256 (569)
T PF15015_consen  177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN  256 (569)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence            34445566778888888888888888887653211         011122223445688999999999999999999999


Q ss_pred             ccccchHHHHHhccchhhhhhHHHHhhhcccc
Q 007725          175 YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (591)
Q Consensus       175 ldP~~~~a~~~rg~al~~lg~~eeAl~~lekA  206 (591)
                      ++|.+..-|.+.+.|+..+.+|.+|...+-.|
T Consensus       257 lnP~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998766554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.83  E-value=0.0028  Score=69.80  Aligned_cols=110  Identities=13%  Similarity=0.059  Sum_probs=96.9

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (591)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg  187 (591)
                      ..|-.+...|+...|+.|+..|+...|....        .-.+|++.++++-+-..+|-.++.++|.++-..+-.+|.+|
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~--------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g  683 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQD--------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG  683 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhc--------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence            3445566789999999999999998876543        24689999999999999999999999999988899999999


Q ss_pred             cchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       188 ~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      .+|..+.+.+.|++.|+.|++++|++.++.+-|..+..
T Consensus       684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999888877655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=95.58  E-value=0.0043  Score=69.59  Aligned_cols=130  Identities=12%  Similarity=-0.045  Sum_probs=102.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...++-++..|-..|+|++|+.+..+||...|..++         +|+-.|.+|-..|++.+|.+..+.|-.+|+.+--.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e---------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyi  264 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE---------LYMTKARILKHAGDLKEAAEAMDEARELDLADRYI  264 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHH
Confidence            356677888888999999999999999999999876         89999999999999999999999999999988888


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccC--CCC-----ChHHHHH--hHHHHHhhhccCCCCCccchH
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVS--PDD-----GTIADVL--RDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~--P~~-----~~a~~~L--~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ....+..+.+.|++++|...+..-..-+  |..     .-+|..+  +.+..+.+++..+...+..+.
T Consensus       265 NsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  265 NSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            8888888899999999999888765544  211     1134433  444555555555555554443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.56  E-value=0.0061  Score=71.08  Aligned_cols=88  Identities=13%  Similarity=0.016  Sum_probs=47.9

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHh
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR  186 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~r  186 (591)
                      ..+...|.+.|++++|.+.|.+.    |..|.       ...|..+-.++...|+++.|...+++.++++|++...|..+
T Consensus       466 ~~li~~l~r~G~~~eA~~~~~~~----~~~p~-------~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L  534 (697)
T PLN03081        466 ACMIELLGREGLLDEAYAMIRRA----PFKPT-------VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL  534 (697)
T ss_pred             HhHHHHHHhcCCHHHHHHHHHHC----CCCCC-------HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence            33444455555555555555442    11111       11344455555556666666666666666666666666666


Q ss_pred             ccchhhhhhHHHHhhhccc
Q 007725          187 GQAYKDIGRLEEAVSDLSN  205 (591)
Q Consensus       187 g~al~~lg~~eeAl~~lek  205 (591)
                      ..+|...|+|++|.+.++.
T Consensus       535 ~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        535 LNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHhCCCHHHHHHHHHH
Confidence            6666666666666665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.55  E-value=0.004  Score=65.09  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=79.6

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (591)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~  192 (591)
                      +....+|..|+.+.+-.+.+.....+        .+-.=+|.||+.+|+|++|+..|+.+..-+.-+.+.+.+++.|++.
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~--------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy  103 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEED--------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY  103 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhH--------HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH
Confidence            45678899999998887765433221        1233478999999999999999999998888889999999999999


Q ss_pred             hhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       193 lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +|.|.+|....++|    |+.+.-...+-.+--++
T Consensus       104 Lg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen  104 LGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             HHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence            99999999888877    56655444444444444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.43  E-value=0.0053  Score=56.59  Aligned_cols=102  Identities=25%  Similarity=0.324  Sum_probs=73.7

Q ss_pred             cccccccchhHHHHHHHhhhcccc-ccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-chHHHHHhccc
Q 007725          112 ELYSEGRFSNALQKYLLAKKNLQG-IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-NVKALYRRGQA  189 (591)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~-~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-~~~a~~~rg~a  189 (591)
                      .++..|++..|+..|.+++...+. ..       ....+..++..+...+++..++..+.+++...+. ....++.++.+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNE-------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL  211 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccc-------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence            788888888888888888775552 11       1223445555577778888888888888888888 68888888888


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007725          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L  220 (591)
                      +...+++++|+..+.+++...|........+
T Consensus       212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  242 (291)
T COG0457         212 YLKLGKYEEALEYYEKALELDPDNAEALYNL  242 (291)
T ss_pred             HHHcccHHHHHHHHHHHHhhCcccHHHHhhH
Confidence            8888888888888888888887643333333

>smart00028 TPR Tetratricopeptide repeats

Probab=95.35  E-value=0.0082  Score=38.51  Aligned_cols=33  Identities=36%  Similarity=0.665  Sum_probs=28.4

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      .+|+++|.++...+++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578889999999999999999999998888753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.26  E-value=0.0028  Score=70.48  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=92.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      .+..+..-+.......|+.+-.+...|..+..+|+.++|++.|.+++......     ..+...|+..++.||.-+.+|+
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-----~Ql~~l~~~El~w~~~~~~~w~  322 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW-----KQLHHLCYFELAWCHMFQHDWE  322 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH-----HhHHHHHHHHHHHHHHHHchHH
Confidence            44556666666677788999999999999999999999999999998543322     3455678999999999999999


Q ss_pred             hhhhhcceeeeccc-cchHHHHHhccchhhhhhH-------HHHhhhcccc
Q 007725          164 ECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRL-------EEAVSDLSNA  206 (591)
Q Consensus       164 eAi~~~~~AL~ldP-~~~~a~~~rg~al~~lg~~-------eeAl~~lekA  206 (591)
                      +|.+++.+.++.+. ..+-++|-.|.||..+++.       ++|.+.++++
T Consensus       323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            99999999988644 3556677788899999988       5555555444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.07  E-value=0.019  Score=60.94  Aligned_cols=182  Identities=13%  Similarity=0.042  Sum_probs=119.9

Q ss_pred             hChh-HHHH--hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhc
Q 007725           35 ANPE-LMRI--ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQG  110 (591)
Q Consensus        35 ~~p~-l~r~--A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~G  110 (591)
                      +|.+ ||+.  |...+-..+.++.++.++.+..-+..-...++-. +.++..++.+++...........+....+....=
T Consensus       116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL  195 (531)
T COG3898         116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL  195 (531)
T ss_pred             ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence            3444 7776  4444667788999988888876432222222222 3333444556666666666666666666766666


Q ss_pred             ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725          111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      ...+..|+|+.|+++........--.+. ..+..+..++.-.+...+ --+...|..+..+++++.|+.+.+-..-+.+|
T Consensus       196 e~r~~~gdWd~AlkLvd~~~~~~vie~~-~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAral  273 (531)
T COG3898         196 EARCAAGDWDGALKLVDAQRAAKVIEKD-VAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARAL  273 (531)
T ss_pred             HHHHhcCChHHHHHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence            6789999999999997655442111111 011111222222222222 23577899999999999999999999999999


Q ss_pred             hhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725          191 KDIGRLEEAVSDLSNAHEVSPDDGTIADV  219 (591)
Q Consensus       191 ~~lg~~eeAl~~lekAl~l~P~~~~a~~~  219 (591)
                      ++.|+..++-..++.+-+.+|+ ++++..
T Consensus       274 f~d~~~rKg~~ilE~aWK~ePH-P~ia~l  301 (531)
T COG3898         274 FRDGNLRKGSKILETAWKAEPH-PDIALL  301 (531)
T ss_pred             HhccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence            9999999999999999999885 334333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.68  E-value=0.013  Score=62.13  Aligned_cols=125  Identities=13%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             ChhHHHH-hhhhhccCCCchhhhhhhh-hcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccc
Q 007725           36 NPELMRI-ATENMKNMRPEDLKCAAEQ-LTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL  113 (591)
Q Consensus        36 ~p~l~r~-A~e~m~~~~pe~~~~a~e~-l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~  113 (591)
                      +|+++-. |...+.-...++...+.++ +++.-.+.   ....+....+.+....++.++..++..++.+..+..+|..+
T Consensus       262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            4663333 4444444444444443333 33322222   33335555666666777888888888999999999999999


Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (591)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL  173 (591)
                      ++.+.|.+|-.+|+.||.+-|...          .|.-+|.+|.++|+..+|.+.+++++
T Consensus       339 ~k~~~w~kA~~~leaAl~~~~s~~----------~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         339 LKNKLWGKASEALEAALKLRPSAS----------DYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCChh----------hHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            999999999999999999877764          47778999999999999988888876

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.64  E-value=0.013  Score=39.38  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=28.8

Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      .++|++|.++..+|++++|+..|++.+...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478899999999999999999999999888863

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.62  E-value=0.02  Score=58.99  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=83.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+....+.+....+.|+.++|...|..|+.+.|.+|.         ++...|.....-++.-+|-.+|.+||.++|.|.+
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~---------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse  185 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ---------ILIEMGQFREMHNEIVEADQCYVKALTISPGNSE  185 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH---------HHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence            3444455566778899999999999999999999987         6677777777777888899999999999999999


Q ss_pred             HHHHhccchhhhh----hHHHHhhhcccccccCCCC-ChHHHHHhHHHH
Q 007725          182 ALYRRGQAYKDIG----RLEEAVSDLSNAHEVSPDD-GTIADVLRDAKE  225 (591)
Q Consensus       182 a~~~rg~al~~lg----~~eeAl~~lekAl~l~P~~-~~a~~~L~~a~~  225 (591)
                      ++.+|+...--..    ++-+.+.+....+..-+.. ........+..+
T Consensus       186 ALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf  234 (472)
T KOG3824|consen  186 ALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYF  234 (472)
T ss_pred             HHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            9999988764332    3334555555555544543 333444444433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.57  E-value=0.037  Score=53.85  Aligned_cols=105  Identities=15%  Similarity=0.079  Sum_probs=82.2

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      .-.+.....++..++..+++++|+..+..++..-.+.      .+...+-.+++.+.+.+|+|++|+..++..-  ++.+
T Consensus        86 ~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De------~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w  157 (207)
T COG2976          86 IYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE------NLKALAALRLARVQLQQKKADAALKTLDTIK--EESW  157 (207)
T ss_pred             HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH------HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccH
Confidence            3345567778888999999999999999998753332      1234456789999999999999999887764  2222


Q ss_pred             -hHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          180 -VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       180 -~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                       +..-..+|.+|...|+-++|+..|++|+..++.
T Consensus       158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         158 AAIVAELRGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence             334567999999999999999999999998743

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.50  E-value=0.049  Score=59.68  Aligned_cols=125  Identities=16%  Similarity=0.096  Sum_probs=89.0

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-----------cc-----cceeeeeeccccc
Q 007725           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-----------SE-----GRTLLLACSLNSM  153 (591)
Q Consensus        90 ~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-----------~e-----~~~l~~~~~~Nla  153 (591)
                      +-.++++..+++.+.++.-++.....  -..+|+++|+++++..+..-.           .+     ....+..+...++
T Consensus       189 kaA~eALei~pdCAdAYILLAEEeA~--Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLA  266 (539)
T PF04184_consen  189 KAAKEALEINPDCADAYILLAEEEAS--TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLA  266 (539)
T ss_pred             HHHHHHHHhhhhhhHHHhhccccccc--CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHH
Confidence            44556677788888888776654322  246677777777764432110           01     1223455667899


Q ss_pred             eeeeccccchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhccccccc-CCCCChH
Q 007725          154 SCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTI  216 (591)
Q Consensus       154 ~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-~P~~~~a  216 (591)
                      .|.+++|+.+|||+.+...++..|.  +...++++-.+|..+++|.++...+.+.-.+ -|+...+
T Consensus       267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti  332 (539)
T PF04184_consen  267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI  332 (539)
T ss_pred             HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence            9999999999999999999988774  6779999999999999999999999886433 2444443

The molecular function of this protein is uncertain.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.40  E-value=0.023  Score=65.59  Aligned_cols=148  Identities=14%  Similarity=0.059  Sum_probs=109.8

Q ss_pred             hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           78 ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        78 ~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      +..+..++..|.+...+-++..|+..-+..-+|-.+++.|++++|..+. +++...+.+.+        ..+--+-.||+
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~--------~tLq~l~~~y~   88 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLL-EALYGLKGTDD--------LTLQFLQNVYR   88 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhccCCCCch--------HHHHHHHHHHH
Confidence            4455678888999999999999988888777888999999999999554 45544443321        13445788999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhccCCCC
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~-~a~~~L~~a~~~l~~~~~a~~  235 (591)
                      .++++++|+.+|++++..+|. -+.++.+=.||.+.+.|.+=.+.--+..+.-|+++ ..|..+..+...+...+....
T Consensus        89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~  166 (932)
T KOG2053|consen   89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD  166 (932)
T ss_pred             HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc
Confidence            999999999999999999999 88888888899998888763333333334567765 457777777666655544433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.39  E-value=0.087  Score=55.11  Aligned_cols=113  Identities=10%  Similarity=-0.002  Sum_probs=66.9

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-cccchHH
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVKA  182 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-dP~~~~a  182 (591)
                      +.+...+..++.+|++.+|...+.+.|+-.|.+-.         ++...-.+|+-.|+...-...++++|-. +++-+-+
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDll---------a~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~  174 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLL---------AVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY  174 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhh---------hhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH
Confidence            34455566778889999999999999988777632         2222333344455555555555555544 4443333


Q ss_pred             HHH---hccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          183 LYR---RGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       183 ~~~---rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      .|.   .+.++.+.|-|++|.+..+++++++|.+.=+...+..+.+
T Consensus       175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle  220 (491)
T KOG2610|consen  175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLE  220 (491)
T ss_pred             HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHH
Confidence            222   3445666677777777777777777766544444444433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.37  E-value=0.017  Score=57.45  Aligned_cols=60  Identities=13%  Similarity=0.279  Sum_probs=56.1

Q ss_pred             eeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       155 ~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      ...+.++++.|.+.|.+++++-|.+...||++|.-..+.|+++.|...|++.++++|.+-
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345778999999999999999999999999999999999999999999999999999864

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.28  E-value=0.0067  Score=42.54  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             HHHHhccchhhhhhHHHHhhhccccccc
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      +|.++|.+|..+|+|++|+.+|++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4677788888888888888888875544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=94.23  E-value=0.034  Score=64.87  Aligned_cols=117  Identities=9%  Similarity=-0.067  Sum_probs=85.8

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .+..+-..+.+.|++++|.++|....+.....|.       ...|..+..+|.+.|++++|.+.+++.- ..| +...|.
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-------~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~  498 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-------AMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWA  498 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-------ccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHH
Confidence            3455556677888888888888877653333332       2257778888889999999999887652 334 455688


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      .+..++...|+++.|...+++.++++|++...+..|..+....++.
T Consensus       499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence            8888888999999999999999999998877777777766655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.23  E-value=0.0081  Score=71.83  Aligned_cols=106  Identities=14%  Similarity=0.055  Sum_probs=80.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc----
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----  178 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----  178 (591)
                      ...+..+|..+...|++++|+..|.+++........   ......++.+++.+++..|++++|...+++++.+...    
T Consensus       491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  567 (903)
T PRK04841        491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDV---YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE  567 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            345667788889999999999999999986553221   0111235678899999999999999999998876321    


Q ss_pred             ----chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          179 ----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       179 ----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                          ....++.+|.++...|++++|...+++++.+..
T Consensus       568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence                233466788899999999999999999987643

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.22  E-value=0.0067  Score=63.68  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=85.5

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-----
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-----  178 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-----  178 (591)
                      ..+...|+.+...+.|+++++.|++|+++...+.+   .-+...++..++..|-++++|++|+-+..+|.++--.     
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D---~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d  199 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD---AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKD  199 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC---ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCc
Confidence            56677899999999999999999999998655433   2344567889999999999999999999999876321     


Q ss_pred             -----chHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725          179 -----NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       179 -----~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~  210 (591)
                           ..-++|+++.+|..+|++-+|.++++.|-++.
T Consensus       200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla  236 (518)
T KOG1941|consen  200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA  236 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence                 23467889999999999999999999987764

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.19  E-value=0.024  Score=39.70  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=25.1

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccc
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQ  134 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p  134 (591)
                      ++.++|+.|.+.|+|++|+++|+++|.+..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            477899999999999999999999776543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=94.15  E-value=0.027  Score=38.31  Aligned_cols=32  Identities=16%  Similarity=0.118  Sum_probs=29.6

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (591)
                      +.+..+|..+...|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57889999999999999999999999999873

...

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.08  E-value=0.023  Score=56.65  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             hhccCCCchhhh----hhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-ccch
Q 007725           46 NMKNMRPEDLKC----AAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFS  120 (591)
Q Consensus        46 ~m~~~~pe~~~~----a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~-g~y~  120 (591)
                      .++..+..|...    +..-.+...|++.....           +.+..-|....++.. .+..+..+|..|-.. .+++
T Consensus        64 h~k~~skhDaat~YveA~~cykk~~~~eAv~cL-----------~~aieIyt~~Grf~~-aAk~~~~iaEiyEsdl~d~e  131 (288)
T KOG1586|consen   64 HLKAGSKHDAATTYVEAANCYKKVDPEEAVNCL-----------EKAIEIYTDMGRFTM-AAKHHIEIAEIYESDLQDFE  131 (288)
T ss_pred             HHhcCCchhHHHHHHHHHHHhhccChHHHHHHH-----------HHHHHHHHhhhHHHH-HHhhhhhHHHHHhhhHHHHH
Confidence            345555444432    44445555666554432           223333333333222 255666777777665 8999


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc------hH-HHHHhccchhhh
Q 007725          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN------VK-ALYRRGQAYKDI  193 (591)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~------~~-a~~~rg~al~~l  193 (591)
                      .||.+|+.+-+....+..   ...--.|++..+..--.+++|.+||..|+++.+-.-+|      ++ .++.-|.||+..
T Consensus       132 kaI~~YE~Aae~yk~ees---~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~  208 (288)
T KOG1586|consen  132 KAIAHYEQAAEYYKGEES---VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK  208 (288)
T ss_pred             HHHHHHHHHHHHHcchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence            999999999987665432   22233466667777777899999999999887654443      33 455678889888


Q ss_pred             hhHHHHhhhcccccccCCCCChH
Q 007725          194 GRLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       194 g~~eeAl~~lekAl~l~P~~~~a  216 (591)
                      .+.-.+...+++...++|.....
T Consensus       209 ~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  209 ADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             ccHHHHHHHHHHHHhcCCccccc
Confidence            88888999999999999987654

>PLN03077 Protein ECB2; Provisional

Probab=93.85  E-value=0.031  Score=66.82  Aligned_cols=92  Identities=12%  Similarity=0.024  Sum_probs=67.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+..+...+.+.|++++|.+.+++. .+.|+.          ..|..+-.++...++.+.+....+++++++|++...
T Consensus       625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~----------~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~  693 (857)
T PLN03077        625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP----------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGY  693 (857)
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH----------HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcch
Confidence            456677777888888888888888764 222322          134444444566777888888888888899999999


Q ss_pred             HHHhccchhhhhhHHHHhhhccc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSN  205 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lek  205 (591)
                      |..++.+|...|+|++|.+..+.
T Consensus       694 y~ll~n~ya~~g~~~~a~~vr~~  716 (857)
T PLN03077        694 YILLCNLYADAGKWDEVARVRKT  716 (857)
T ss_pred             HHHHHHHHHHCCChHHHHHHHHH
Confidence            99999999999999998876643

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.49  E-value=0.021  Score=52.31  Aligned_cols=82  Identities=11%  Similarity=0.201  Sum_probs=66.4

Q ss_pred             eccccceeeeccc---cchhhhhhcceeee-ccc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          148 CSLNSMSCYLKTK---QYDECIKVGSEVLA-YDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       148 ~~~Nla~~y~~lg---~y~eAi~~~~~AL~-ldP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      +.+|++.|+.+..   +..+.|..++..++ -.| ...+++|.++..++++++|+.++.++...++.+|+|..+...-..
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            4556666665543   55677888888875 444 457789999999999999999999999999999999999988888


Q ss_pred             HHHHhhh
Q 007725          223 AKEILMK  229 (591)
Q Consensus       223 a~~~l~~  229 (591)
                      ++.++.+
T Consensus       114 ied~itk  120 (149)
T KOG3364|consen  114 IEDKITK  120 (149)
T ss_pred             HHHHHhh
Confidence            8888754

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=93.46  E-value=0.022  Score=59.02  Aligned_cols=114  Identities=9%  Similarity=-0.057  Sum_probs=78.4

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-cccchhhhhhcceeeeccccchHHHH
Q 007725          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      |..+.+...+.+..+.|...|.+|++..+...+         +|...|...++ .++.+.|...|+++++.-|.+...|.
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~---------vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~   74 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH---------VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWL   74 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH---------HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            334445555556678888888888864443333         56677777455 45566689999999988888888888


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhh
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILM  228 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~  228 (591)
                      ....-+..+++.+.|...|++++..-|...   .+|.....-+...+
T Consensus        75 ~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G  121 (280)
T PF05843_consen   75 EYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG  121 (280)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence            888888888899999999999988877654   45555555555444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.42  E-value=0.013  Score=65.40  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=86.1

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHH
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKAL  183 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~  183 (591)
                      ..+-+.+..+|+..+|..+++.|...+...|.|.   ....+.....+++.||+++.+.+.|++.+.+|-+.||.++-.-
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q  431 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQ  431 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHH
Confidence            4567788889999999999999999999877763   3455677888999999999999999999999999999988777


Q ss_pred             HHhccchhhhhhHHHHhhhccccccc
Q 007725          184 YRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       184 ~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      +..-.+....+.-++|+..+.+....
T Consensus       432 ~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  432 LLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            77777777778888888777655443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.37  E-value=0.05  Score=56.08  Aligned_cols=113  Identities=19%  Similarity=0.175  Sum_probs=71.7

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhc-----------------
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG-----------------  169 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~-----------------  169 (591)
                      ...+..+...|++.+|...|..++...|....         +..-++.||+..|++++|...+                 
T Consensus       138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~---------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a  208 (304)
T COG3118         138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSE---------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQA  208 (304)
T ss_pred             HHHhhhhhhccchhhHHHHHHHHHHhCcccch---------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHH
Confidence            33444555555556666656665555555432         3444555555555554433322                 


Q ss_pred             -----------------ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhh
Q 007725          170 -----------------SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILM  228 (591)
Q Consensus       170 -----------------~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~l~  228 (591)
                                       .+.+..||++..+-+.++..|...|++++|++.|-..++.+-.  +..++..|-.+...++
T Consensus       209 ~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         209 QIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                             2223448889999999999999999999999888888777654  4567777777666665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.35  E-value=0.022  Score=55.09  Aligned_cols=112  Identities=13%  Similarity=0.023  Sum_probs=86.7

Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee-ccccchHHHHHhccchhhhhhH
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-YDAKNVKALYRRGQAYKDIGRL  196 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~-ldP~~~~a~~~rg~al~~lg~~  196 (591)
                      +.+..++.-.+.+...|....          .+.++..+.++|+|.||+..|.+++. +--+++..+.-++++.+.++++
T Consensus        71 dP~R~~Rea~~~~~~ApTvqn----------r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~  140 (251)
T COG4700          71 DPERHLREATEELAIAPTVQN----------RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF  140 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHH----------HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence            445555555666666666543          67899999999999999999999875 5668889999999999999999


Q ss_pred             HHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          197 EEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       197 eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      .+|...+++..+.+|..  ++-.-.++++....+++..+....+.
T Consensus       141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~  185 (251)
T COG4700         141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV  185 (251)
T ss_pred             HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence            99999999999999874  55666777777777665544444333

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.07  E-value=0.016  Score=58.06  Aligned_cols=85  Identities=13%  Similarity=0.012  Sum_probs=70.2

Q ss_pred             eccccceeeeccccchhhhhhcceeeec--------cc----------cchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAY--------DA----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~l--------dP----------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      ++...|.-++++|+|.+|+..|..||..        .|          .....+.|..+|+...|+|-++++.+...|..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            5566888899999999999999999753        22          33447899999999999999999999999999


Q ss_pred             CCCCChHHHHHhHHHHHhhhccC
Q 007725          210 SPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       210 ~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      +|.+.+++...++++...=+..+
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~e  282 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAE  282 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHH
Confidence            99999999888887665544333

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.60  E-value=0.079  Score=45.38  Aligned_cols=65  Identities=25%  Similarity=0.202  Sum_probs=53.0

Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhh
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMK  229 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~  229 (591)
                      .+..++++++.+|++..+.|.++.++...|++++|++.|-..+..++++  ..++..+-.+...++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            3566778888999999999999999999999999999999999999876  5677777777777754

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=92.43  E-value=0.066  Score=55.36  Aligned_cols=72  Identities=17%  Similarity=0.108  Sum_probs=62.8

Q ss_pred             ccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      +.+.-.++.|+.++|...|+.|+.++|+++.++...|.....-++.-+|-.+|-+|+.++|.+.++.-+..+
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            334445678999999999999999999999999999999988899999999999999999999877655443

>PLN03218 maturation of RBCL 1; Provisional

Probab=92.28  E-value=0.066  Score=65.20  Aligned_cols=92  Identities=11%  Similarity=0.005  Sum_probs=51.9

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc-ccchH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD-AKNVK  181 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld-P~~~~  181 (591)
                      .+..+...|.+.|++++|+..|.+....  .|+          ...|..+..+|.+.|++++|++.+.+.++.. +.+..
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD----------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD----------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            3444444555666666666666655542  121          1235555556666666666666666655433 23455


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccc
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNA  206 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekA  206 (591)
                      .|..+..+|.+.|++++|+..|++.
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM  710 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDI  710 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            6666666666666666666666654

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.24  E-value=0.049  Score=60.39  Aligned_cols=111  Identities=11%  Similarity=0.007  Sum_probs=90.7

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (591)
Q Consensus        97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld  176 (591)
                      +.+......+..-.-.+.-+|+..+|+.||..++.+.+++..       -..++.+|.++.+.|...+|--.+..|+.-.
T Consensus       207 q~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k-------di~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  207 QKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK-------DIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             hcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc-------cchhhhHHHHHHHcccccchhheeehhccCC
Confidence            334444444443334445688999999999999999887643       3467889999999999999999999999888


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      |....-||.++.+|..++.|...+-+|..+.+.+|...
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchh
Confidence            88788899999999999999999999999999999753

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.21  E-value=0.074  Score=61.61  Aligned_cols=91  Identities=21%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh
Q 007725          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD  192 (591)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~  192 (591)
                      ....++|.+|+....+.++..|+.+.         +..--|..+.++|++++|..+++..-..-+++...+-.+-.||.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~---------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d   89 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALY---------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD   89 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence            45678899999999999998777643         445567788999999999976666656667788888899999999


Q ss_pred             hhhHHHHhhhcccccccCCC
Q 007725          193 IGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       193 lg~~eeAl~~lekAl~l~P~  212 (591)
                      ++++++|+..|++++..+|.
T Consensus        90 ~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   90 LGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HhhhhHHHHHHHHHHhhCCc
Confidence            99999999999999999998

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=91.74  E-value=0.017  Score=44.49  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR  186 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~r  186 (591)
                      |++.+|..++++|+|.+|.++++.+|+++|+|..+..-+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            566788899999999999999999999999998876443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=91.48  E-value=0.11  Score=34.69  Aligned_cols=32  Identities=16%  Similarity=0.259  Sum_probs=28.8

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (591)
                      ++++.+|.++++.|++++|++.|++.+...|+
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            36788999999999999999999999998775

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.46  E-value=0.17  Score=51.57  Aligned_cols=121  Identities=14%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccc----cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  159 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~----~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l  159 (591)
                      .++.+.+++.+.+....+.  .+..+++.|    -..+++.+|.-.|++.-+..+..+.         +....+.|++.+
T Consensus       152 r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~---------llnG~Av~~l~~  220 (299)
T KOG3081|consen  152 RFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPL---------LLNGQAVCHLQL  220 (299)
T ss_pred             HHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChH---------HHccHHHHHHHh
Confidence            3445555555555443332  222222222    2344578888888877664333332         566788888888


Q ss_pred             ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc-ccccccCCCCCh
Q 007725          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL-SNAHEVSPDDGT  215 (591)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l-ekAl~l~P~~~~  215 (591)
                      ++|++|...++.+|.-+++++..+.|+-.+-..+|.-.++...+ .+....+|.++-
T Consensus       221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            88888888888888888888888888888888888876665544 444445666553

>smart00028 TPR Tetratricopeptide repeats

Probab=91.42  E-value=0.1  Score=33.04  Aligned_cols=32  Identities=25%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (591)
                      ..+..+|..++..++|++|+..|.+++.+.|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35788899999999999999999999988664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.25  E-value=0.075  Score=54.04  Aligned_cols=112  Identities=17%  Similarity=0.059  Sum_probs=81.0

Q ss_pred             ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725          111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      +++.+..+++-|....++..+++.+....    -++.+|++++.-   ..++.+|.-.|++--+..|..+..+.-.+.|+
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided~tLt----QLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~llnG~Av~~  217 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDEDATLT----QLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH  217 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHH----HHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence            34556666666666666666654443110    012233333322   35688888888888877777888888999999


Q ss_pred             hhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          191 KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       191 ~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      ..+++|++|...++.||.-++++++...++-.+-..++.
T Consensus       218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK  256 (299)
T ss_pred             HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999888887666654

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=91.24  E-value=0.067  Score=53.30  Aligned_cols=98  Identities=17%  Similarity=0.169  Sum_probs=71.3

Q ss_pred             cccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch-------hhhhhcceeeeccc------c
Q 007725          112 ELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD-------ECIKVGSEVLAYDA------K  178 (591)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~-------eAi~~~~~AL~ldP------~  178 (591)
                      .+.....+++|++.|..||-...-..  +-....+.+++.+|-+|+.+++.+       .|++.|.++++...      +
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~--~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKK--EKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            56677888999999998887532111  111134567888999999998854       45555655554332      3


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                      ....+|.+|..+.++|++++|+.+|.+.+..--
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999986543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.00  E-value=0.062  Score=58.94  Aligned_cols=107  Identities=15%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-cccchH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-DAKNVK  181 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-dP~~~~  181 (591)
                      +.....++.++.+.|+.++||+.|+..++..|....       ..++.|+-.||+.+++|.++...+.+-=++ -|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------LNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence            445567889999999999999999999988776432       347889999999999999998877665333 266777


Q ss_pred             HHHHhccchhh-hhh---------------HHHHhhhcccccccCCCCChH
Q 007725          182 ALYRRGQAYKD-IGR---------------LEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       182 a~~~rg~al~~-lg~---------------~eeAl~~lekAl~l~P~~~~a  216 (591)
                      ..|..+....+ .++               -..|++.+++|++.+|+-++.
T Consensus       332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            77777665433 222               134778899999999986543

The molecular function of this protein is uncertain.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=90.88  E-value=0.039  Score=66.01  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=82.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-----
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-----  177 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP-----  177 (591)
                      +..+..+|..++..|++++|..++.+++.+....... .......++.+++.+++..|++++|...+.+++.+..     
T Consensus       531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE-QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence            4466778889999999999999999999875442110 0011122355788889999999999999999987532     


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                      ....++..+|.++...|++++|...+++++.+..
T Consensus       610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            2466777899999999999999999999977643

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=90.87  E-value=0.084  Score=52.64  Aligned_cols=61  Identities=18%  Similarity=0.085  Sum_probs=55.1

Q ss_pred             ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          111 NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       111 n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      ..+.+.++++.|.+.|.+++.+.|.+..         .|..+|....+.|+++.|.+.|+++|++||.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~---------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAA---------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhh---------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3467889999999999999999998755         799999999999999999999999999999763

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.75  E-value=0.073  Score=51.41  Aligned_cols=103  Identities=13%  Similarity=0.066  Sum_probs=76.4

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc--
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA--  177 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP--  177 (591)
                      ...-..+..+|+.|++.|++++|+++|.++..+......      .+..++++-.+.+..++|..+.....++-.+--  
T Consensus        33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~------~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~  106 (177)
T PF10602_consen   33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH------KIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG  106 (177)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence            334578899999999999999999999999887544332      234667777777888999998888888755422  


Q ss_pred             cc----hHHHHHhccchhhhhhHHHHhhhcccccc
Q 007725          178 KN----VKALYRRGQAYKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       178 ~~----~~a~~~rg~al~~lg~~eeAl~~lekAl~  208 (591)
                      .+    .+.....|.++...++|.+|...|-.++.
T Consensus       107 ~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  107 GDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             chHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            22    22344467777888999999988877653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.75  E-value=0.096  Score=63.21  Aligned_cols=136  Identities=13%  Similarity=0.030  Sum_probs=91.3

Q ss_pred             HHHHHHHhhhhcccc--------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee
Q 007725           84 EIATMRARIDAQMNY--------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC  155 (591)
Q Consensus        84 e~~~a~~~~~~~l~~--------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~  155 (591)
                      +++.|.+-+++++..        .++..-++.|+-|.|-   .-+.-.+.|++|.+++...          ..|..|+-.
T Consensus      1473 EiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd~~----------~V~~~L~~i 1539 (1710)
T KOG1070|consen 1473 EIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCDAY----------TVHLKLLGI 1539 (1710)
T ss_pred             hhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcchH----------HHHHHHHHH
Confidence            455555555555441        2223344444444433   3344556677777764332          256777888


Q ss_pred             eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhhhccC
Q 007725          156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~l~~~~~  232 (591)
                      |.+..+|++|.+.++.-++.--...+.|...+..+++..+-++|...+.+|++.-|.  |.++......++++.++.+.
T Consensus      1540 y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeR 1618 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAER 1618 (1710)
T ss_pred             HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchh
Confidence            888888888888888877766677778888888888888888888888888888887  66677777777777766554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=90.72  E-value=0.12  Score=62.41  Aligned_cols=131  Identities=12%  Similarity=0.015  Sum_probs=107.2

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (591)
Q Consensus        88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~  167 (591)
                      .+.=++++.+|.. .-..+..+...|-+.++|++|.++|+.-++......         ..|.-.+..+++..+-++|..
T Consensus      1516 l~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~---------~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR---------KVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh---------hHHHHHHHHHhcccHHHHHHH
Confidence            3333444444433 244566677789999999999999999998766433         378999999999999999999


Q ss_pred             hcceeeecccc--chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          168 VGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       168 ~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      .+.+||+.-|.  +.+....-+..-++.|+-+.+...|+..+.-+|...++|..+.+.+.+.+
T Consensus      1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence            99999999998  88888889999999999999999999999999999999998877665543

>PLN03077 Protein ECB2; Provisional

Probab=90.48  E-value=0.097  Score=62.57  Aligned_cols=113  Identities=10%  Similarity=0.048  Sum_probs=68.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeecccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      .++.|...++..    ......|..+...|.+.|++++|++.|++.++.  .|+..          .|..+-.+|.+.|.
T Consensus       539 ~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~----------T~~~ll~a~~~~g~  604 (857)
T PLN03077        539 RMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV----------TFISLLCACSRSGM  604 (857)
T ss_pred             CHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc----------cHHHHHHHHhhcCh
Confidence            444555555443    344556777777788888888888888876652  23321          34444445566677


Q ss_pred             chhhhhhcceeeec---cccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          162 YDECIKVGSEVLAY---DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       162 y~eAi~~~~~AL~l---dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      +++|.+.|+...+.   .| +...|..+..+|.+.|++++|.+.+++. .+.|+
T Consensus       605 v~ea~~~f~~M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        605 VTQGLEYFHSMEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            77777777666522   23 3355666666777777777777776654 24444

>PLN03218 maturation of RBCL 1; Provisional

Probab=90.31  E-value=0.11  Score=63.48  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=67.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhc--cccccccccceeeeeeccccceeeeccccchhhhhhcceeee----cc
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKN--LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----YD  176 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l--~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~----ld  176 (591)
                      ...+..+-..|.+.|++++|++.|.+....  .|+          ...|..+-.+|.+.|++++|.+.+.+...    +.
T Consensus       507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD----------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~  576 (1060)
T PLN03218        507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD----------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPID  576 (1060)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC
Confidence            445555666677777777777777766442  122          12466666666777777777777766643    34


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccC-CCCChHHHHHhHHHHH
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS-PDDGTIADVLRDAKEI  226 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~-P~~~~a~~~L~~a~~~  226 (591)
                      |+ ...|..+-.+|.+.|++++|++.|+...+.. +.+...+..+-....+
T Consensus       577 PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k  626 (1060)
T PLN03218        577 PD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ  626 (1060)
T ss_pred             Cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            43 3455556666777777777777777666554 2233444444443333

>PRK10941 hypothetical protein; Provisional

Probab=90.30  E-value=0.073  Score=54.87  Aligned_cols=77  Identities=13%  Similarity=-0.068  Sum_probs=66.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+.++-..|.+.++|+.|+.+.+..+.+.|++|.         -+.-||.+|.+++.+..|+.+++.-|+..|+.+.+
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------EIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence            355667777899999999999999999999999975         46669999999999999999999999999999887


Q ss_pred             HHHhcc
Q 007725          183 LYRRGQ  188 (591)
Q Consensus       183 ~~~rg~  188 (591)
                      ..-+-.
T Consensus       252 ~~ik~q  257 (269)
T PRK10941        252 EMIRAQ  257 (269)
T ss_pred             HHHHHH
Confidence            654433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.10  E-value=0.11  Score=53.93  Aligned_cols=128  Identities=13%  Similarity=0.038  Sum_probs=89.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccc-cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYS-EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~-~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      ++.+..-+.++.+...-....+...+..-++ .++.+.|...|+.+++..|.++.         +|+.....+.+.++.+
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~---------~~~~Y~~~l~~~~d~~   87 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD---------FWLEYLDFLIKLNDIN   87 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH---------HHHHHHHHHHHTT-HH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhCcHH
Confidence            5556655666555444455666666766455 67777799999999999998876         5666667888999999


Q ss_pred             hhhhhcceeeeccccch---HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725          164 ECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~---~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~  221 (591)
                      .|...|++++..-|...   ..|-....--...|+++......+++.++-|.+..+.....
T Consensus        88 ~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~  148 (280)
T PF05843_consen   88 NARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD  148 (280)
T ss_dssp             HHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            99999999998766544   34444455556778899999999999988888665544443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.05  E-value=0.077  Score=57.87  Aligned_cols=91  Identities=11%  Similarity=0.068  Sum_probs=71.4

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhh-ccccccc--------cccceeeeeeccccceeeeccccchhhhhhccee
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKK-NLQGIHS--------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~-l~p~~~~--------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A  172 (591)
                      ....+.++|..+|+.|.|.-++.+|.+||+ .+.....        .-...-..-+.||.|..|+..|+...|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            345678999999999999999999999996 2111000        0011112336799999999999999999999999


Q ss_pred             eeccccchHHHHHhccchhh
Q 007725          173 LAYDAKNVKALYRRGQAYKD  192 (591)
Q Consensus       173 L~ldP~~~~a~~~rg~al~~  192 (591)
                      ...--.++..|.|++.|...
T Consensus       362 v~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHH
Confidence            99999999999999998763

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=90.03  E-value=0.21  Score=54.53  Aligned_cols=115  Identities=14%  Similarity=0.037  Sum_probs=94.7

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhc
Q 007725           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (591)
Q Consensus        90 ~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~  169 (591)
                      .+++..++.+.-....+...|.--..++++..|...|++||..+-.+         +.+|+..+.|-++.+....|...+
T Consensus        60 kefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------itLWlkYae~Emknk~vNhARNv~  130 (677)
T KOG1915|consen   60 KEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------ITLWLKYAEFEMKNKQVNHARNVW  130 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------chHHHHHHHHHHhhhhHhHHHHHH
Confidence            44555555555566677777777788899999999999999986554         558999999999999999999999


Q ss_pred             ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       170 ~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      ++|+.+-|.--+.||..-..--.+|+..-|...|++=+...|+.
T Consensus       131 dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e  174 (677)
T KOG1915|consen  131 DRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE  174 (677)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence            99999999999999888777778888888888888888888864

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.061  Score=54.98  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=67.9

Q ss_pred             eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHH
Q 007725          143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA  217 (591)
Q Consensus       143 ~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~  217 (591)
                      +++.....|+-..|.+.++++.|..+.++.|.++|.++..+--||.+|.++|.+.-|+.+++..++..|+++.+.
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            344556778888999999999999999999999999999999999999999999999999999999999987643

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.85  E-value=0.15  Score=51.81  Aligned_cols=90  Identities=11%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             ChHHHHHHHHhhhhccc------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccce
Q 007725           81 SPEEIATMRARIDAQMN------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS  154 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~  154 (591)
                      +.++++.+...++...+      ..-.....+++.+-.+....+|.+|...|.+.+..++.++.         +-+|.+.
T Consensus       224 Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~---------a~NnKAL  294 (366)
T KOG2796|consen  224 QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV---------ANNNKAL  294 (366)
T ss_pred             hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh---------hhchHHH
Confidence            44556666655553322      22234556788888899999999999999999999888865         6788999


Q ss_pred             eeeccccchhhhhhcceeeeccccc
Q 007725          155 CYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       155 ~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      |++-+|+..+|++..+.++.++|..
T Consensus       295 cllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  295 CLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCcc
Confidence            9999999999999999999999964

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.11  E-value=0.12  Score=45.96  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=71.7

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-----------cchhhhhhcceeeeccc
Q 007725          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-----------QYDECIKVGSEVLAYDA  177 (591)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-----------~y~eAi~~~~~AL~ldP  177 (591)
                      ++..++.+|++-+|++.-+..+...+++...      +.++.--|.+++++.           -...+++.|.++..+.|
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp   75 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESS------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP   75 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCch------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh
Confidence            3456889999999999999999877665430      112233344443322           23468899999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccC
Q 007725          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~  210 (591)
                      ..+..+|.+|.=+-....|++++.-.+++|.+.
T Consensus        76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999999999998888888999999998888764

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=87.53  E-value=0.11  Score=54.86  Aligned_cols=147  Identities=12%  Similarity=0.111  Sum_probs=97.6

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhc---ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQG---NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~G---n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      +.+.+.+.+.+.+....+.-..+..+|   .++...|+|++++.+---.|......   +....+..+|.|++..|.++-
T Consensus        21 ~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~---~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   21 QTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL---EDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            445566655555554444333344333   46778889988876643333322211   111223447899999999999


Q ss_pred             cchhhhhhcceeeeccccc-----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhh
Q 007725          161 QYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMK  229 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~-----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~------~a~~~L~~a~~~l~~  229 (591)
                      +|.+++.++..-+.+-...     ..++..+|.++..++.|+.+++.|++|+.+.-++.      .+.-.|+...-.+++
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            9999999998888764322     35677799999999999999999999998865443      245556666666666


Q ss_pred             ccCC
Q 007725          230 EDGH  233 (591)
Q Consensus       230 ~~~a  233 (591)
                      +.++
T Consensus       178 ~~Ka  181 (518)
T KOG1941|consen  178 YEKA  181 (518)
T ss_pred             hhHH
Confidence            6554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.40  E-value=0.36  Score=33.87  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccc
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ  134 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p  134 (591)
                      +..+.++|..|...|+|++|+.+|.+++.+..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~   33 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence            45788999999999999999999999998643

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.17  E-value=0.24  Score=51.97  Aligned_cols=112  Identities=10%  Similarity=-0.027  Sum_probs=88.4

Q ss_pred             HhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhc-cccccccccceeeeeeccccceeeeccccchhhhhh
Q 007725           90 ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKN-LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV  168 (591)
Q Consensus        90 ~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l-~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~  168 (591)
                      -+.++-++..|....+++.--..+|..|+...-...+++.|-. +++.|.      ..++.--++.|+...|-|++|.+.
T Consensus       124 ~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~------~sYv~GmyaFgL~E~g~y~dAEk~  197 (491)
T KOG2610|consen  124 IEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC------YSYVHGMYAFGLEECGIYDDAEKQ  197 (491)
T ss_pred             HHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH------HHHHHHHHHhhHHHhccchhHHHH
Confidence            3445556667777777777777888888888888888888766 555542      122233378899999999999999


Q ss_pred             cceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       169 ~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      .+++++|++.+.=+.+.++.++.-.+++.++++...+--
T Consensus       198 A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  198 ADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             HHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            999999999999999999999999999999998877653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.32  E-value=0.25  Score=34.71  Aligned_cols=30  Identities=40%  Similarity=0.516  Sum_probs=23.5

Q ss_pred             hHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      +.++.++|.+|...|++++|+.++++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788888888889999998888888754

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=86.11  E-value=0.29  Score=53.75  Aligned_cols=94  Identities=18%  Similarity=0.132  Sum_probs=78.3

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhh-HHH
Q 007725          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEE  198 (591)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~-~ee  198 (591)
                      ..-+..|++|+...+.|+.         +|.+......+.+.|.+....|.++|.++|+++..|..-+.-.++.+. .+.
T Consensus        88 ~rIv~lyr~at~rf~~D~~---------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s  158 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVK---------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES  158 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence            3445679999999888765         666665555566669999999999999999999999999998888777 999


Q ss_pred             HhhhcccccccCCCCChHHHHHhH
Q 007725          199 AVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       199 Al~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      |...+.++|..+|+.+.+|..+-+
T Consensus       159 aRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  159 ARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HHHHHHHHhhcCCCChHHHHHHHH
Confidence            999999999999999988775544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=85.84  E-value=0.25  Score=45.43  Aligned_cols=74  Identities=23%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhhhc
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEVGA  250 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e~~e~~~~  250 (591)
                      .....++..++.++...|++++|+..+++++.++|-+..++..+-.+....++...+...|........++...
T Consensus        59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~  132 (146)
T PF03704_consen   59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI  132 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence            34566777888899999999999999999999999999999999999999999888877777776655555443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=85.69  E-value=0.41  Score=44.09  Aligned_cols=75  Identities=12%  Similarity=0.046  Sum_probs=56.4

Q ss_pred             HHHHHHHhccccccccc---chhHHHHHHHhhh-ccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725          102 AAKMLKKQGNELYSEGR---FSNALQKYLLAKK-NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~---y~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP  177 (591)
                      ..+..++++.++.+..+   -.+.|..++..+. -.|..        ...|.+.++..|+++++|+.++.+++..|+.+|
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--------rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~  102 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--------RRECLYYLAVGHYRLKEYSKSLRYVDALLETEP  102 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--------chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence            44566777777766544   4667888888876 22222        234778899999999999999999999999999


Q ss_pred             cchHHHH
Q 007725          178 KNVKALY  184 (591)
Q Consensus       178 ~~~~a~~  184 (591)
                      +|..+.-
T Consensus       103 ~n~Qa~~  109 (149)
T KOG3364|consen  103 NNRQALE  109 (149)
T ss_pred             CcHHHHH
Confidence            9988753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=85.64  E-value=1.5  Score=44.62  Aligned_cols=123  Identities=13%  Similarity=0.089  Sum_probs=87.5

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee--------ccccchhhhhhc
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL--------KTKQYDECIKVG  169 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~--------~lg~y~eAi~~~  169 (591)
                      +.+-.-++...++-.+++.++|++|+...++-+.+.|.+++.      ..+++-+|.+++        ....-.+|+..+
T Consensus        66 ~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f  139 (254)
T COG4105          66 FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAF  139 (254)
T ss_pred             CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh------hHHHHHHHHHHhccCCccccCHHHHHHHHHHH
Confidence            344456788889999999999999999999999999999862      334444454443        334456788888


Q ss_pred             ceeeeccccch-----H----------HH--HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          170 SEVLAYDAKNV-----K----------AL--YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       170 ~~AL~ldP~~~-----~----------a~--~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      ...|..-|+..     +          +.  ...|.-|.+.|.|..|+..++..++--|+...+...|....+.
T Consensus       140 ~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea  213 (254)
T COG4105         140 KELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEA  213 (254)
T ss_pred             HHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            89888877541     1          11  2246667788889999999999998877766555544444333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=83.91  E-value=1.1  Score=49.24  Aligned_cols=99  Identities=14%  Similarity=0.073  Sum_probs=75.3

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      -++.+.-.+....++.+...|.+..-.||-.+|.+..          +...-..-+++++++.|...|++-|+..|.+..
T Consensus       403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~Kl----------Fk~YIelElqL~efDRcRkLYEkfle~~Pe~c~  472 (677)
T KOG1915|consen  403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKL----------FKGYIELELQLREFDRCRKLYEKFLEFSPENCY  472 (677)
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhH----------HHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence            4556666666777788888888888888888777642          222223345678888888888888888888888


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccC
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~  210 (591)
                      +|...|..-..+|+.+.|...|+-|+...
T Consensus       473 ~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  473 AWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            88888888888888888888888887653

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=83.25  E-value=0.62  Score=47.75  Aligned_cols=79  Identities=14%  Similarity=-0.033  Sum_probs=66.5

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      ....+.++=+.+...++++.|..+-.+.+.++|.+|.         -+.-+|.+|.++|.+.-|+++++..++..|+.+.
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~  250 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPY---------EIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------hccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence            3445555666788999999999999999999999985         3667999999999999999999999999999888


Q ss_pred             HHHHhccc
Q 007725          182 ALYRRGQA  189 (591)
Q Consensus       182 a~~~rg~a  189 (591)
                      +-+-+...
T Consensus       251 a~~ir~~l  258 (269)
T COG2912         251 AEMIRAQL  258 (269)
T ss_pred             HHHHHHHH
Confidence            76655543

>smart00727 STI1 Heat shock chaperonin-binding motif

Probab=82.16  E-value=2.1  Score=30.73  Aligned_cols=31  Identities=26%  Similarity=0.645  Sum_probs=26.9

Q ss_pred             HHHHhcCCHHHHHHHHHHhhcCCHHHHhhhhhh
Q 007725          483 QMRNQMNDPAMKQMFSSMVKNMSPEMMANMSEQ  515 (591)
Q Consensus       483 ~m~~~m~~p~m~~m~~~mmk~m~p~~~~~m~~~  515 (591)
                      .+..+|+||.+++++..|+.|  |+.+..|-++
T Consensus         3 ~~~~~l~~P~~~~~l~~~~~n--P~~~~~~~~~   33 (41)
T smart00727        3 EMALRLQNPQVQSLLQDMQQN--PDMLAQMLQE   33 (41)
T ss_pred             HHHHHHcCHHHHHHHHHHHHC--HHHHHHHHHh
Confidence            577888999999999999999  9988887764

>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function

Probab=81.62  E-value=2.8  Score=35.50  Aligned_cols=43  Identities=14%  Similarity=0.425  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhhcCCHHHHhhhhhhhccccChhhHHHHHHHhcc
Q 007725          492 AMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSS  534 (591)
Q Consensus       492 ~m~~m~~~mmk~m~p~~~~~m~~~~g~~~~~~~~~~~~~~~~~  534 (591)
                      =++++...=++++|++.+-.-|+|+|+.++++||++-.+-|+.
T Consensus         3 i~qqiVn~Kln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~   45 (85)
T PF11116_consen    3 IIQQIVNQKLNNITAKELLKYSKQYNISITKKQAEQIANILRG   45 (85)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence            3567777779999999999999999999999999999998874

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.35  E-value=0.51  Score=33.75  Aligned_cols=29  Identities=21%  Similarity=0.257  Sum_probs=25.6

Q ss_pred             HHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      ..|..+|.+-...++|+.|+.+|++|+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            56788999999999999999999999865

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.05  E-value=0.99  Score=29.10  Aligned_cols=25  Identities=24%  Similarity=0.147  Sum_probs=20.7

Q ss_pred             HHHHHhccchhhhhhHHHHhhhccc
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSN  205 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lek  205 (591)
                      .+++.+|.+|...|++++|...+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence            4678889999999999999887763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	591
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		9e-14
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-11
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		5e-11
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		7e-10
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		1e-08
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		1e-08
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		7e-07
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		3e-06
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		5e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		6e-06
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		8e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		3e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-04
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		5e-04

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 83  EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKK--------NLQ 134
           +E    +AR D  +     AA   K  GN L+ E +   A+Q+Y +A           L 
Sbjct: 159 DETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 135 GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG 194
           G +      +   C LN  +C +K K+YDE I   + VL  + KN KAL+RRG+A  ++G
Sbjct: 219 GKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG 278
Query: 195 RLEEAVSDLSNAHEVSPDDGTIADVLR 221
           +++ A  D   A + +PDD  I   LR
Sbjct: 279 QMDSARDDFRKAQKYAPDDKAIRRELR 305

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           ++ + L+K+GNEL+  G +  AL  Y  A     G+ ++     +L    N  +C+LK +
Sbjct: 26  SSVEQLRKEGNELFKCGDYGGALAAYTQA----LGLDATPQDQAVL--HRNRAACHLKLE 79
Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + L
Sbjct: 80  DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
Query: 221 RD 222
           R+
Sbjct: 140 RN 141

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%)
Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS----EGRTL---LLACSLNSMSCYLK 158
           LK  GN  +    +  A++KY    + ++G  ++    +G  L    L+C LN  +C LK
Sbjct: 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK 285
Query: 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI-A 217
              +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A E++P+D  I A
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345
Query: 218 DVLRDAKEILMKED 231
           ++L+  ++I  ++D
Sbjct: 346 ELLKVKQKIKAQKD 359

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 11/120 (9%)
Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------RTLLLACSLNSMSCY 156
           +K++GNE + +   + A+ KY  A      IH+ E          + + ++C+LN  +CY
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCY 98
Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
            K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  A  ++P++  I
Sbjct: 99  NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 103 AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156
           A ++K++G   +  G++  A+ +Y      L  +  L    S    + LLA  LN   CY
Sbjct: 268 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           LK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 103 AKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCY 156
           A ++K++G   +  G++  A+ +Y      L  +  L    S    + LLA  LN   CY
Sbjct: 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327
Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           LK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     EV+P +
Sbjct: 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 89  RARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSE 140
           +A+   +MN E     + ++K++G   + EG++  AL +Y      L  + +     + +
Sbjct: 131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK 190
Query: 141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV 200
            + L LA  LN   C+LK + +   I+  ++ L  D+ N K L+RRG+A+  +   E A 
Sbjct: 191 AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELAR 250
Query: 201 SDLSNAHEVSPDD 213
           +D     ++ P++
Sbjct: 251 ADFQKVLQLYPNN 263

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           N+A+  K  GN  Y +G +  A++ Y   +K L+   ++       +   N  + Y K  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYY---QKALELDPNNA------SAWYNLGNAYYKQG 57
Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            Y + I+   + L  D  N KA YRRG AY   G  ++A+ D   A E+ P++      L
Sbjct: 58  DYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNL 117
Query: 221 RDAKE 225
            +AK+
Sbjct: 118 GNAKQ 122

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 102 AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 149
           A  ++ ++GN LY EG    A  KY   +   KNLQ          I   +  T LL   
Sbjct: 7   AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 63
Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
           LN   C L  ++Y E +   S +L     NVKA ++RG+A+  +   +EA +D +   E+
Sbjct: 64  LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 123
Query: 210 SP 211
            P
Sbjct: 124 DP 125

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 102 AAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQ---------GIHSSEGRTLLLACS 149
           A  ++ ++GN LY EG    A  KY   +   KNLQ          I   +  T LL   
Sbjct: 13  AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLL--- 69
Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
           LN   C L  ++Y E +   S +L     NVKA ++RG+A+  +   +EA +D +   E+
Sbjct: 70  LNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLEL 129
Query: 210 SP 211
            P
Sbjct: 130 DP 131

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 105 MLKKQGNELYSEGRFSNALQKY------LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK 158
           ++K++G   + EG++  AL +Y      L  + +     + + + L LA  LN   C+LK
Sbjct: 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK 208
Query: 159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            + +   I+  ++ L  D+ N K L RRG+A+  +   E A +D     ++ P++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 28/241 (11%)
Query: 9   EMIRLAQEQMNRMSPDDFA-------RIQQQMMANPELMRIATEN-MKNMRPE----DLK 56
           EM RL  + +N     D+        +I +  + + EL  +  E  +K   P     DLK
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 57  CAAEQLTHTPPEEVAEIGEKLANASPEEIATMRAR----IDAQMNYEFNAAKMLKK---- 108
            AA +L +   E   +I          E++    R    +D      F   K +KK    
Sbjct: 202 -AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 109 --QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
                EL  +GR+++A  KY    K    I     R+    C      C+ K ++  E I
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAI 315
Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI 226
           +V SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375
Query: 227 L 227
           L
Sbjct: 376 L 376

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
             EL  +GR+++A  KY    K    I     R+    C      C+ K ++  E I+V 
Sbjct: 264 AEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH-----CFSKDEKPVEAIRVC 318
Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
           SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +L
Sbjct: 319 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 5/118 (4%)
Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
             EL  +GR+++A  KY    K    +     R+    C      C+ K ++  E I++ 
Sbjct: 241 AEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICH-----CFSKDEKPVEAIRIC 295
Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
           SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ +L
Sbjct: 296 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 11/126 (8%)
Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLACSLNSMSCYLKT 159
           N+A+     GN  Y +G +  A++ Y   +K L+   +++E          N  + Y K 
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYY---QKALELDPNNAEAW-------YNLGNAYYKQ 56
Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV 219
             YDE I+   + L  D  N +A Y  G AY   G  +EA+     A E+ P++      
Sbjct: 57  GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Query: 220 LRDAKE 225
           L +AK+
Sbjct: 117 LGNAKQ 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	591
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-32
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-19
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	7e-18
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-17
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-14
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	5e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	4e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-04

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  128 bits (324), Expect = 1e-34
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 9/146 (6%)

Query: 95  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLL 145
               E    +A  +K++GNE + +   + A+ KY  A          +        + + 
Sbjct: 28  DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 87

Query: 146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSN 205
           ++C+LN  +CY K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  
Sbjct: 88  ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147

Query: 206 AHEVSPDDGTIADVLRDAKEILMKED 231
           A  ++P++  I +        L +  
Sbjct: 148 AASLNPNNLDIRNSYELCVNKLKEAR 173

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  124 bits (314), Expect = 1e-33
 Identities = 33/139 (23%), Positives = 52/139 (37%), Gaps = 9/139 (6%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---------RTLLLACSLN 151
            + + L+++GNEL+ +  +  A+  Y  A   L  +   E              +    N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP 211
              CYL      E  +  SEVL  +  N KAL+RR +A     +L+EA  DL       P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 212 DDGTIADVLRDAKEILMKE 230
              ++             E
Sbjct: 129 AAASVVAREMKIVTERRAE 147

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  125 bits (316), Expect = 4e-32
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 56  KCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS 115
           K       + PP   A++  ++     +E    +AR D  +     AA   K  GN L+ 
Sbjct: 134 KEGNFSFPNVPPM--ADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFK 191

Query: 116 EGRFSNALQKYLLAKKNLQGIHSSE--------GRTLLLACSLNSMSCYLKTKQYDECIK 167
           E +   A+Q+Y +A   +      +           +   C LN  +C +K K+YDE I 
Sbjct: 192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL 227
             + VL  + KN KAL+RRG+A  ++G+++ A  D   A + +PDD  I   LR   E  
Sbjct: 252 HCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311

Query: 228 MKED 231
               
Sbjct: 312 KALY 315

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  125 bits (315), Expect = 6e-32
 Identities = 41/219 (18%), Positives = 88/219 (40%), Gaps = 9/219 (4%)

Query: 22  SPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANA 80
               F   + + +  P  +  A + M+      +         +  +E  +I        
Sbjct: 63  RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKY 122

Query: 81  SPEEIATMRARIDAQMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ---- 134
                +  +A+   +MN E     + ++K++G   + EG++  AL +Y      L+    
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182

Query: 135 --GIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD 192
                + + + L LA  LN   C+LK + +   I+  ++ L  D+ N K L RRG+A+  
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242

Query: 193 IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED 231
           +   E A +D     ++ P++      L   ++ + ++ 
Sbjct: 243 VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  116 bits (293), Expect = 1e-28
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 95  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA-------KKNLQGIHSSEGRTLLLA 147
            ++     ++ LK  GN  +    +  A++KY          +   +    ++ + + L+
Sbjct: 215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALS 274

Query: 148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH 207
           C LN  +C LK   +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A 
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334

Query: 208 EVSPDDGTIADVLRDAKEIL 227
           E++P+D  I   L   K+ +
Sbjct: 335 EIAPEDKAIQAELLKVKQKI 354

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  112 bits (280), Expect = 1e-26
 Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 95  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLAC 148
               +   A ++K++G   +  G++  A+ +Y      L+  +           + LLA 
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
            LN   CYLK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D     E
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379

Query: 209 VSPDDGTIADVLRDAKEILMKED 231
           V+P +      +   ++   + +
Sbjct: 380 VNPQNKAARLQISMCQKKAKEHN 402

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 94.3 bits (235), Expect = 5e-23
 Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 6/120 (5%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           + + L+K+GNEL+  G +  AL  Y  A      +              N  +C+LK + 
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQA------LGLDATPQDQAVLHRNRAACHLKLED 80

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221
           YD+     S+ +  D  +VKALYRR QA + +GRL++AV DL     + P +    + LR
Sbjct: 81  YDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 85.5 bits (212), Expect = 1e-19
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           A+ LK Q N+ +    + NA++ Y  A      I  +    +      N    YL+T+ Y
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQA------IELNPSNAIYYG---NRSLAYLRTECY 63

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
              +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       ++
Sbjct: 64  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123

Query: 223 AKEILMKED 231
             +I+ ++ 
Sbjct: 124 CNKIVKQKA 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 23/134 (17%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------SC 155
           +A+ LK+QGN L+   ++  A   Y                  +    L ++       C
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACY------------GRA---ITRNPLVAVYYTNRALC 52

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215
           YLK +Q ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +   
Sbjct: 53  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 112

Query: 216 IADVLRDAKEILMK 229
             +   D    L  
Sbjct: 113 --NFGDDIPSALRI 124

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 81.9 bits (203), Expect = 7e-19
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 15/136 (11%)

Query: 89  RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLAC 148
            A I+ ++      A+  K +GNE + +G +  A++ Y       + +       +L + 
Sbjct: 5   LAYINPEL------AQEEKNKGNEYFKKGDYPTAMRHYN------EAVKRDPENAILYS- 51

Query: 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
             N  +C  K  ++   +      +  D+K +K   R+      +    +A     +A +
Sbjct: 52  --NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109

Query: 209 VSPDDGTIADVLRDAK 224
           V P +    + +R+  
Sbjct: 110 VDPSNEEAREGVRNCL 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 80.7 bits (200), Expect = 1e-18
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 9/123 (7%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
              LK++GN+  S G   +ALQ Y  A      I       +L +   N  + Y K   Y
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEA------IKLDPHNHVLYS---NRSAAYAKKGDY 54

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
            +  + G + +       K   R+  A + + R EEA        +   ++  + + L++
Sbjct: 55  QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114

Query: 223 AKE 225
            + 
Sbjct: 115 MEA 117

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 79.2 bits (196), Expect = 7e-18
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
             A+ LK +GNE      F  A+  Y  A      I  +    +      N  + Y K  
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKA------IELNPANAVYFC---NRAAAYSKLG 60

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL 220
            Y   ++     +  D    KA  R G A   + +  EAV+    A E+ PD+ T    L
Sbjct: 61  NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120

Query: 221 RDAKEILMK 229
           + A+  L +
Sbjct: 121 KIAELKLRE 129

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 22/134 (16%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------SCY 156
           A+  + +G E +++  + NA++ Y                  +     ++       +  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---------------IKRAPEDARGYSNRAAAL 48

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
            K   + E I   ++ +  D   V+A  R+  A   +     A+  L  A     +    
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN- 107

Query: 217 ADVLRDAKEILMKE 230
               R+  ++  K 
Sbjct: 108 GSSAREIDQLYYKA 121

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 11/133 (8%)

Query: 93  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 152
            + MN +   A M+K +GNE + +G +  A++ Y       + I  +     L +   N 
Sbjct: 8   HSHMNPD--LALMVKNKGNECFQKGDYPQAMKHYT------EAIKRNPKDAKLYS---NR 56

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +CY K  ++   +K   E +  +   +K   R+  A + +    +A+     A ++   
Sbjct: 57  AACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

Query: 213 DGTIADVLRDAKE 225
               AD  +    
Sbjct: 117 CKEAADGYQRCMM 129

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 79.6 bits (196), Expect = 1e-16
 Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 9/129 (6%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           +A+ LK+QGN L+   ++  A   Y  A      I  +    +      N   CYLK +Q
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNPLVAVYYT---NRALCYLKMQQ 53

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ +         
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 222 DAKEILMKE 230
            +   + K+
Sbjct: 114 PSALRIAKK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 5/126 (3%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           L +   EL  +GR+++A  KY    K              +        C+ K ++  E 
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMK-----TEPSIAEYTVRSKERICHCFSKDEKPVEA 314

Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
           I+V SEVL  +  NV AL  R +AY      +EA+ D   A E + +D  I + L  A+ 
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQR 374

Query: 226 ILMKED 231
           +L +  
Sbjct: 375 LLKQSQ 380

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 15/116 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYL 157
              +   + G +L + G+ ++AL ++  A     +    +                + +L
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA------------TVFL 71

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              +    +   ++V+        A  +RG      G+L+EA  D     + +P +
Sbjct: 72  AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEG---RTLLLACSLNSMSCYLKTKQYD 163
           G+ L  +G+   A   +        +      ++    ++  +    +       +  Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             I    ++L     + +    R + +   G   +A+SDL  A ++  D+
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN 210

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 90  ARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQ-GIHSSEGRTLLLAC 148
            +       + +  + L+ Q    +  G ++ A+         L+  +  +E R  L A 
Sbjct: 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWDAELR-ELRAE 185

Query: 149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
                 C++K  +  + I            N +A Y+    Y  +G  E ++S++    +
Sbjct: 186 ------CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 209 VSPDDGTIADVLRDAKEIL 227
           +  D        +  K++ 
Sbjct: 240 LDQDHKRCFAHYKQVKKLN 258

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 20/106 (18%)

Query: 108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK 167
             G +L +E  +  ++      K    G                     L   Q  + + 
Sbjct: 8   SSGVDLGTENLYFQSMADV--EKHLELGK------------------KLLAAGQLADALS 47

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +  D  N  A YRR   +  +G+ + A+ DL+   ++  D 
Sbjct: 48  QFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKT 159
             A   K+ GN+ Y +  F  AL+ Y  AK+    +  +          + + +  Y + 
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKE----LDPTN------MTYITNQAAVYFEK 51

Query: 160 KQYDECIKVGSEVLAYDAKN-------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
             Y++C ++  + +    +N        KA  R G +Y    + ++A+   + +      
Sbjct: 52  GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

Query: 213 DGTIADVLRDAKEILMKED 231
              +    + A++IL +++
Sbjct: 112 PDVLKK-CQQAEKILKEQE 129

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 93  DAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN 151
               +Y+       L +   EL  +GR+++A  KY    K       S     + +    
Sbjct: 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK----TEPSVAEYTVRS--KE 276

Query: 152 SM-SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
            +  C+ K ++  E I++ SEVL  +  NV AL  R +AY      +EA+ D   A E +
Sbjct: 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336

Query: 211 PDDGTIADVLRDAKEIL 227
            +D  I + L  A+ +L
Sbjct: 337 ENDQQIREGLEKAQRLL 353

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159
            +   + G +L + G+ ++AL ++  A     +    +                + +L  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRA------------TVFLAM 50

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +    +   ++V+A       A  +RG      G+L+EA  D     + +P +
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 104

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 20/136 (14%), Positives = 50/136 (36%), Gaps = 10/136 (7%)

Query: 98  YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157
            + +  + L+ Q  + +    ++ A+       +    +  +E R  L A       C++
Sbjct: 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILE--VCVWDAELR-ELRAE------CFI 165

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217
           K  +  + I          + N +A Y+    Y  +G  E ++S++    ++  D     
Sbjct: 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 225

Query: 218 DVLRDAKEIL-MKEDG 232
              +  K++  + E  
Sbjct: 226 AHYKQVKKLNKLIESA 241

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.0 bits (169), Expect = 6e-14
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 11/130 (8%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           +  LK +GN   +   +S A+  Y  A      +  +    + L+   N  + Y  + Q+
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQA------LSIAPANPIYLS---NRAAAYSASGQH 61

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVL 220
           ++  +        D K  KA  R G A  D+   + A        E   + G+ A    L
Sbjct: 62  EKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121

Query: 221 RDAKEILMKE 230
              K  + + 
Sbjct: 122 ETTKRKIEEA 131

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 67.7 bits (166), Expect = 6e-14
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 19/132 (14%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-CYLKT 159
           +AA   K  GN  Y +  F  A   Y  A +    +  S           N+ +  Y + 
Sbjct: 6   DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE----LDPSN------ITFYNNKAAVYFEE 55

Query: 160 KQYDECIK-------VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           K++ EC++       VG E  A      KA+ R G A++    L  AV     +     D
Sbjct: 56  KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

Query: 213 DGTIADVLRDAK 224
              +   +++ +
Sbjct: 116 PELVKK-VKELE 126

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
            A+ LK Q N+ +    + NA++ Y  A      I  +    +      N    YL+T+ 
Sbjct: 5   RAEELKTQANDYFKAKDYENAIKFYSQA------IELNPSNAIYYG---NRSLAYLRTEC 55

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR 221
           Y   +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       +
Sbjct: 56  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 115

Query: 222 DAKEILMKED 231
           +  +I+ ++ 
Sbjct: 116 ECNKIVKQKA 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 8e-13
 Identities = 65/472 (13%), Positives = 125/472 (26%), Gaps = 118/472 (25%)

Query: 190 YKDIGR--LEEAVSDLSNAHEVSPDDGTIADVLR------DAKEILMKEDGHHGPR---G 238
           YKDI     +  V +         D   + D+ +      +   I+M +D   G      
Sbjct: 18  YKDILSVFEDAFVDNF--------DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 239 LLIEEITEEVGAVSSGSHRSSGTEY------LAREKADPSKSEH---SANGRGSSTKPEF 289
            L+ +  E V        R     Y      +  E+  PS           R  +    F
Sbjct: 70  TLLSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 290 LPDLKDDPESIRSFQNFISNANPDSFAALSG----GK---AGEISPDMFKAVSIMINKM- 341
                   +     +  +    P     + G    GK   A ++    +K    M  K+ 
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-YKVQCKMDFKIF 185

Query: 342 --------SPEELQRMIQ----------IASSFQGENPHANGDSIETNFNGFRPGSTPPN 383
                   SPE +  M+Q           + S    N      SI+              
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------- 237

Query: 384 MRPDMLKTASDVMSKMSSEDLQKMFEMES----TLKNKVAGQASTAVDPKGISSDPGPR- 438
           ++    +    V+  + +      F +      T + K      +A     IS D     
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 439 --LSESRERSAVNGNNVVGQPSSGGFFPNSRTNQQSSFSPST-----ADLQQMRN----- 486
               E +          +         P     +  + +P         ++         
Sbjct: 298 LTPDEVKSLLL----KYLDCRPQD--LPR----EVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 487 -QMNDPAMKQMFSSMVKNMSPEMMANMSEQFGIKLSREDTEKFQQTMSSLSLNDLDRMML 545
             +N   +  +  S +  + P     M ++  +             +S          ++
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLS----------LI 395

Query: 546 WADRVQRGVQGV-----------KKTKNWLLGKPGMILAICMLILAVI-LHR 585
           W D ++  V  V           K+ K   +  P + L + + +     LHR
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 42/316 (13%), Positives = 92/316 (29%), Gaps = 107/316 (33%)

Query: 6   MDPEMIRLAQEQMNRMSP-----------DDFARIQQ-QMMANPELMRIATENMKNMRPE 53
             P+ +     ++   +P           D  A     + +   +L  I   ++  + P 
Sbjct: 313 CRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 54  DLKCAAEQL------THTPP------------EEVAEIGEKLANASPEEIATMRARIDAQ 95
           + +   ++L       H P              +V  +  KL   S              
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-------------- 415

Query: 96  MNYEFNAAKMLKKQGNELYSEGRFS-NALQKYLLAK-KNLQGIHSSEGRTLLLACSLNSM 153
                    +++KQ      E   S  ++   L  K +N   +H    R+++        
Sbjct: 416 ---------LVEKQPK----ESTISIPSIYLELKVKLENEYALH----RSIV-------- 450

Query: 154 SCYLKTKQYD--ECIKVGSEV-----LAYDAKNVK-----ALYRR--------------- 186
             Y   K +D  + I    +      + +  KN++      L+R                
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 187 GQAYKDIGRLEEAVSDLSN--AHEVSPDDGTIADVLRDAKEILMK--EDGHHGPRGLLIE 242
             A+   G +   +  L     + +  +D     ++    + L K  E+        L+ 
Sbjct: 511 STAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 243 -EITEEVGAVSSGSHR 257
             +  E  A+   +H+
Sbjct: 570 IALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 43/334 (12%), Positives = 97/334 (29%), Gaps = 107/334 (32%)

Query: 67  PEEVAEIGEKLANASPEE----------------IATMRA-RIDAQMNYE-F-------N 101
            +   ++ + L    P +                +    + ++  +M+++ F       N
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           + + + +   +L            Y +          S    L +      +   LK+K 
Sbjct: 194 SPETVLEMLQKLL-----------YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-------RLEEAVSDLSNAH--EVSPD 212
           Y+ C+ V   V   +AK   A         ++        R ++    LS A    +S D
Sbjct: 243 YENCLLVLLNV--QNAKAWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 213 DGTIADVLRDAKEILMK-----------EDGHHGPRGLLIEEITEEVGAVSSGSHRSSGT 261
             ++     + K +L+K           E     P    +  I E    +  G       
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLSIIAES---IRDGLATWDNW 347

Query: 262 EYLAREKADPSKSEHSANGRGSSTKPEFLPDLKDDPESIRS-FQN---FISNANPDSFAA 317
           +++  +K              ++     L  L  +P   R  F     F  +A+      
Sbjct: 348 KHVNCDKL-------------TTIIESSLNVL--EPAEYRKMFDRLSVFPPSAH------ 386

Query: 318 LSGGKAGEISPDMFKAVSIMINKMSPEELQRMIQ 351
                   I       +S++   +   ++  ++ 
Sbjct: 387 --------IPT---ILLSLIWFDVIKSDVMVVVN 409

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 3e-11
 Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 21/133 (15%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM-SCY 156
           + A   K +GN+ Y   +F  A++ Y  A    K+                 LN+  +  
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD--------------ITYLNNRAAAE 48

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
            +  +Y+  I   ++ +    +         +++  IG     + DL    E      T 
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 217 ---ADVLRDAKEI 226
              AD+L   +  
Sbjct: 109 HRTADILTKLRNA 121

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.6 bits (148), Expect = 2e-10
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 15/116 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYL 157
             A+  + +G E +++  + NA++ Y             +S+              +   
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA------------AALA 184

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           K   + E I   ++ +  D   V+A  R+  A   +     A+  L  A     + 
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV 240

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
            + L         L+K                 EG+             Y     +   +
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE------------YFTKSDWPNAV 159

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           K  +E++    ++ +    R  A   +    EA++D + A E  P+ 
Sbjct: 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 33/121 (27%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS-------- 154
            +  K+QGN L+ +G +  A+  Y             +        +    +        
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCY------------DQ------LITAQPQNPVGYSNKA 45

Query: 155 -CYLKTKQYDECIKVGSEVLAYDAKNVKAL------YRRGQAYKDIGRLEEAVSDLSNAH 207
              +K  +Y + I++  + L Y +            YR   A   +G ++  V ++    
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105

Query: 208 E 208
           E
Sbjct: 106 E 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 16/119 (13%)

Query: 97  NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSM 153
           +     A  LK +GN  ++   F+ A++ Y  A     N    +S+              
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS------------ 66

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +CY+ T   ++ I+  ++ L     + KAL RR  A + +G   +A+ DL +   ++ D
Sbjct: 67  ACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL-SVLSLNGD 124

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 12/114 (10%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKT 159
           NAA  L   G   + +    +A       ++++  +H +         S   +       
Sbjct: 241 NAALALCYTGIFHFLKNNLLDAQVLL---QESIN-LHPT-------PNSYIFLALTLADK 289

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +   E  K   + +  + +     Y RGQ Y  +   + A  D   A  ++P++
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 22/126 (17%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTL----LLACSLNSMSCYLKTKQY 162
              L   G F  A+++Y +A   ++  + IH   G  +    +LA   +     L  +++
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVL 220
           +  IK+ ++    D ++ +A     Q    + +++EA+    ++  ++        A   
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 221 RDAKEI 226
            +A +I
Sbjct: 505 AEAAKI 510

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 18/175 (10%)

Query: 69  EVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ---- 124
            V  +      AS E +        A      N +K   +    L S    ++       
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176

Query: 125 -----------KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173
                       Y  A   L                + +      T  Y   +   +   
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236

Query: 174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT---IADVLRDAKE 225
                   AL   G  +     L +A   L  +  + P   +   +A  L D + 
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKEN 291

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 11/107 (10%), Positives = 24/107 (22%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G   +    + NA + +  A          +                    K  ++ E  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA------------CLLYKQGKFTESE 364

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              +E         +      +   D G  + A+     A  +    
Sbjct: 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +   K ++E IK     +  D             Y   G LE+ +   + A E+ PD 
Sbjct: 34  HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 23/108 (21%), Positives = 48/108 (44%), Gaps = 18/108 (16%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMS-CY 156
             A  LK +GN+ +   ++ +A++ Y   L  K++                  +++S CY
Sbjct: 4   KYALALKDKGNQFFRNKKYDDAIKYYNWALELKED--------------PVFYSNLSACY 49

Query: 157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLS 204
           +      + +++ ++ L       K L RR  A + +G+  +A+ DLS
Sbjct: 50  VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLS 97

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 29/197 (14%), Positives = 51/197 (25%), Gaps = 25/197 (12%)

Query: 24  DDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA--- 80
                +          +  A  +  N   ++L      L    PE   +  E    A   
Sbjct: 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218

Query: 81  SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIH 137
             E++         +       A  L+  G   + +     A +    A      +    
Sbjct: 219 FEEQLDKNNEDEKLKEKL----AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN--- 271

Query: 138 SSEGRTLLLACSLNSM-SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL 196
                      S   M           E      + L  D+ N    Y RGQ    +   
Sbjct: 272 -----------SYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320

Query: 197 EEAVSDLSNAHEVSPDD 213
           ++A  D   A E+ P++
Sbjct: 321 DQAGKDFDKAKELDPEN 337

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
              L  +  F  AL++Y LA   +  L GI+      +  A  L         + + E  
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT---VENFIEAT 435

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  +    D ++ +A     Q       ++EA++    + +++   
Sbjct: 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTM 482

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G   +    +  A + +  AK+        +                    +  ++D+C 
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA------------CLAYRENKFDDCE 358

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            + SE      +  +      +   D    ++A+     A E+    
Sbjct: 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            + + K+YD+ IK  +  L      V         Y  +G L++ V   + A E+ PD 
Sbjct: 15  QFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 11/109 (10%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-LACSLNSMSCYLKTKQYDE 164
           +     + Y++GR   A   +    + L          ++ LA      + Y   +Q+ +
Sbjct: 39  IYSYAYDFYNKGRIEEAEVFF----RFLCIYDFYNVDYIMGLA------AIYQIKEQFQQ 88

Query: 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              + +   A    +   ++  GQ    +    +A        + S D+
Sbjct: 89  AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 23/122 (18%), Positives = 42/122 (34%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
           G   +  G +  A + +L A + ++ I +            N      K K+Y E +   
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH 259

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK 229
            + L    +N       G  +  +G  E AV     A  +  DD     +L    E+ + 
Sbjct: 260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG 319

Query: 230 ED 231
           + 
Sbjct: 320 DS 321

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 167
            G+    E     A+  Y  A + ++G H            +  +   Y  T       +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLP----------MLYIGLEYGLTNNSKLAER 180

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
             S+ L+   ++   ++  G      G  + A     +A E     G
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 10/115 (8%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
               ++       Y    F    +   +  +       +    + +          ++  
Sbjct: 20  ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGT-------LVELN 70

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL-EEAVSDLSNAHEVSPDDG 214
           + +E   +  +++     N  + +  G  Y  +G   E A   LS A  +    G
Sbjct: 71  KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 10/93 (10%), Positives = 25/93 (26%), Gaps = 15/93 (16%)

Query: 110 GNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G+      +++ AL  +  A          +S+ G              +     ++  +
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGY------------IHSLMGNFENAV 290

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA 199
                 L     +  ++   G   +      EA
Sbjct: 291 DYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 7/118 (5%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLLACSLNSM-SC 155
              + ++ +     G+   A+  +         +  +    + +  + + +     +   
Sbjct: 4   VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           Y K + YD+      E+L     NV  L    +     G+ ++A+       ++  D+
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYL 157
           N    L+         G+  +AL+ Y   L  + +    +   G              YL
Sbjct: 86  NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY-----------YL 134

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---G 214
             +Q  + ++   + L+   K   A YR G +     R E+A + L       P      
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194

Query: 215 TIADVLRDAKEI 226
           T+  +LR  KE+
Sbjct: 195 TLDKILRIEKEV 206

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM------S 154
           +  + L   G   Y  G++ +A + +               + L +    ++       +
Sbjct: 16  DTLEQLYALGFNQYQAGKWDDAQKIF---------------QALCMLDHYDARYFLGLGA 60

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           C      Y++ ++  S     D    +  +   + +  +G L+ A S   +A  ++    
Sbjct: 61  CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120

Query: 215 TIADVLRDAKEIL 227
               +   A  +L
Sbjct: 121 AHEALAARAGAML 133

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 54.9 bits (131), Expect = 5e-09
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 14/124 (11%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159
           A +           G +  A      A      +    + +       C           
Sbjct: 11  AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70

Query: 160 KQYDECIKVGSEVLAYDAKN-----------VKALYRRGQAYKDIGRLEEAVSDLSNAHE 208
           + +DE +    + L Y  +            + A+Y R  A   +GR  EA+ +     E
Sbjct: 71  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130

Query: 209 VSPD 212
           +  +
Sbjct: 131 MIEE 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 15/109 (13%)

Query: 108 KQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE 164
           +  +  Y  G F  A +        + +  G+                 S + + ++ D 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLS------------SIHFQCRRLDR 51

Query: 165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +  +  +    +A    G  YK+ G+L+EA+    +A  + PD 
Sbjct: 52  SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
              L + G    A+Q Y+ A     +L  + S  G            +      + +E  
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG------------NLLKALGRLEEAK 155

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               + +        A    G  +   G +  A+     A  + P+ 
Sbjct: 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 5e-06
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G    ++G    A+  +  A     N    + + G  L             + + +D  +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK------------EARIFDRAV 223

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                 L+    +          Y + G ++ A+     A E+ P  
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 19/124 (15%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
               Y +G    A+  Y  A   + +    + +    L             +     E  
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK------------EKGSVAEAE 291

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRD 222
              +  L     +  +L       ++ G +EEAV     A EV P+       +A VL+ 
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351

Query: 223 AKEI 226
             ++
Sbjct: 352 QGKL 355

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 21/107 (19%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           GN L     F  A+  YL A     N   +H +                Y +    D  I
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA------------CVYYEQGLIDLAI 257

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                 +        A      A K+ G + EA    + A  + P  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 45.6 bits (109), Expect = 3e-05
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 168
            N L  +G  + A   Y      L+ +  +       A SLN++ +   +    +E +++
Sbjct: 278 ANALKEKGSVAEAEDCY---NTALR-LCPT------HADSLNNLANIKREQGNIEEAVRL 327

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAK 224
             + L    +   A        +  G+L+EA+     A  +SP        + + L++ +
Sbjct: 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

Query: 225 E 225
           +
Sbjct: 388 D 388

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 168
           G   +++     A+  +  A   L  +  ++      A +  ++   Y K K YD  I  
Sbjct: 482 GVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA 223
            ++ L     +          Y        A++ L  +  +SP++   +D+L+ A
Sbjct: 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 15/140 (10%)

Query: 77  LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG- 135
           L  A  E    ++         +    + L        S        + YL +   L+  
Sbjct: 245 LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKS 304

Query: 136 --IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI 193
             +   +  TL +              ++ + + + +++L  D  N+        +  + 
Sbjct: 305 SDLLLCKADTLFVRS------------RFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352

Query: 194 GRLEEAVSDLSNAHEVSPDD 213
           G   +     ++  +  P+ 
Sbjct: 353 GEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 13/114 (11%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
            ++ +L  + + L+   RF + L       + +   +        L      ++   ++ 
Sbjct: 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILE-IDPYN--------LDVYPLHLASLHESG 353

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           + ++   + ++++    +        G  Y  + ++ EA    S +  + P  G
Sbjct: 354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG 407

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +    ++D+ I   +                G  +  +G +  A   L +++ +   D
Sbjct: 416 SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 36/236 (15%), Positives = 61/236 (25%), Gaps = 35/236 (14%)

Query: 10  MIRLAQEQMNRMS--PDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPP 67
           M+    +  +RM   P +         A             N     L            
Sbjct: 1   MVVKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLA 60

Query: 68  EEVAEIGEKLANASPEEIATMRA-------RIDAQMNYEFNAA-----KMLKKQGNE--L 113
              +  G  L   + +   ++         R DA M  ++  A     K+L   GN    
Sbjct: 61  NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDA 120

Query: 114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173
           +   +       Y  AK  L      +      AC   +  C +K   +   + +  E  
Sbjct: 121 FWLAQVYCCTGDYARAKCLL---TKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETN 177

Query: 174 AY------------DAKNVK----ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +                +K      Y RGQ Y ++   + A      A  V    
Sbjct: 178 PFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 11/109 (10%)

Query: 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 167
             +    EG    A+  Y  A +  QG H               +   +++        +
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLP----------YLFLGMQHMQLGNILLANE 462

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI 216
                 A    +   L   G    +   ++ A++   NA  +     + 
Sbjct: 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN 511

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            YL   +  E  +  S+    D +   A      ++   G  ++A+S  + A  +    
Sbjct: 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G  L  +G+ S A+Q+Y  A         ++   G            S +     +   I
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIG------------SYFYNKGNFPLAI 128

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +   + +     + K  Y  GQAY       +A S      E+ P+ 
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 18/117 (15%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKT 159
             +  +  + L+    ++ A++ +      K N   I++                CY + 
Sbjct: 3   DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYN------------RRAVCYYEL 50

Query: 160 KQYDECIKVGS---EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +YD   K        +             G+     G+   A+     A +     
Sbjct: 51  AKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 17/156 (10%)

Query: 63  THTPPEEVAEIGEKLANASPEEIATMRAR--IDAQMNYEFNAAKMLKKQGNELYSEGRFS 120
           ++T   +   +   L     +E+   R    + ++   +   A++L ++G    S G  +
Sbjct: 1   SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 121 NALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA 177
            A   +  A   + ++  + +  G  L             +   +D   +    VL  D 
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLT------------QAGNFDAAYEAFDSVLELDP 108

Query: 178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               A   RG A    GR + A  DL   ++  P+D
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 6/110 (5%)

Query: 110 GNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSL---NSMSCYLKTKQYD 163
                +E   + AL      LL++   + + S   +  +    L   +    +    +Y 
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           EC  +    L  +  + +     G  Y      + A ++L  A E+ PDD
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 21/130 (16%)

Query: 92  IDAQMNYEFNA------AKMLKKQGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGR 142
           +    +Y F A       +   ++G  +      + A   +          +    S G 
Sbjct: 4   LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL 63

Query: 143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD 202
           T              + ++    I   +     D K++        ++ +      A++ 
Sbjct: 64  TQA------------ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111

Query: 203 LSNAHEVSPD 212
           L       P 
Sbjct: 112 LRAWLLSQPQ 121

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 15/100 (15%)

Query: 117 GRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL 173
           G        Y     N          EG ++L            K     E       V 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSML------------KLANLAEAALAFEAVC 48

Query: 174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               +  +A    G    +  +   A+  L++A  + P D
Sbjct: 49  QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
            +     G  +                    +  GR                 +++ E  
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR------------VRWTQQRHAEAA 77

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  +      ++       G A +D G+ E A +  + AH++ P++
Sbjct: 78  VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 16/125 (12%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKV 168
           G  LY + R+  A Q+ L A ++      S            ++    L+ K+  +  + 
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSR--------VFENLGLVSLQMKKPAQAKEY 163

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-------GTIADVLR 221
             + L  +                      A        +    +         +A V  
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223

Query: 222 DAKEI 226
           D    
Sbjct: 224 DRDTA 228

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
            +LK       + +  E++  D   V   Y  G+ Y+ + R ++A+   +   EV+ ++G
Sbjct: 16  EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75

Query: 215 TI--ADVLRDAKEILMKEDGHH 234
           T      L+DAK      + HH
Sbjct: 76  TQKDLSELQDAKLKAEGLEHHH 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKV 168
           +G     +  +  AL  +   +     I  + G              Y   K   E  K 
Sbjct: 12  EGVLAADKKDWKGALDAFSAVQDPHSRICFNIG------------CMYTILKNMTEAEKA 59

Query: 169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA 217
            +  +  D     A ++RG  Y    + + A+ DL  A      +  I 
Sbjct: 60  FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 8e-07
 Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 9/121 (7%)

Query: 93  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS 152
             Q  +E  A +    +  E  ++   S + + Y    +N                +   
Sbjct: 21  KMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPG---------AFEE 71

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
               LK       I      +  D  + +A    G    +    + A+  L    E+ P+
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 213 D 213
           +
Sbjct: 132 N 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 15/143 (10%)

Query: 73  IGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLA 129
           I E     +   ++             F       ++G +   EG     +      +L 
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 130 KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA 189
                      G T              + +     I      L     N+KAL     +
Sbjct: 95  DPGDAEAWQFLGITQA------------ENENEQAAIVALQRCLELQPNNLKALMALAVS 142

Query: 190 YKDIGRLEEAVSDLSNAHEVSPD 212
           Y +    ++A   L N  + +P 
Sbjct: 143 YTNTSHQQDACEALKNWIKQNPK 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+       + +  ++  +  L  AH ++P  
Sbjct: 387 GKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 445

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 11/116 (9%), Positives = 26/116 (22%), Gaps = 15/116 (12%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKK---NLQGIHSSEGRTLLLACSLNSMSCYL 157
                +        +       L     A           +S                  
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD------------GGKQ 151

Query: 158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 152 ALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 217 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 7/54 (12%), Positives = 20/54 (37%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +      + V A+       + +  ++  +  L  AH ++P+ 
Sbjct: 86  ETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 139

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 7/59 (11%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+       + +  ++  +  L  AH ++P+ 
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ 377

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 285 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 8/59 (13%), Positives = 21/59 (35%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P+ 
Sbjct: 353 GKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 8/59 (13%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+   G   + +  ++  +  L  AH ++P  
Sbjct: 183 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ 241

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 8/63 (12%), Positives = 18/63 (28%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
                +     + V  +      + V A+   G     +  +   +S    A     +D 
Sbjct: 421 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480

Query: 215 TIA 217
            +A
Sbjct: 481 LVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 7/59 (11%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +      + V A+       + +  ++  +  L  AH ++P  
Sbjct: 251 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ 309

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 7/181 (3%)

Query: 39  LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMR---ARIDAQ 95
           L  I   +   ++   +              VAE+  +++ +      T     A I   
Sbjct: 54  LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113

Query: 96  MNYEFNAAKMLKKQGNELYSEGRFSNAL---QKYLLAKKNLQGIHSSEGRTLLLACSLNS 152
                +AA     QG+ L         L    +  LA+K L+ +   +    L   +   
Sbjct: 114 DQ-NPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +S     ++  +   +  E+    +  +  L  +   +   GR E A   L  A +    
Sbjct: 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232

Query: 213 D 213
            
Sbjct: 233 H 233

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           L       Y  G + +A   +    + L  +   + R  L   +     C     QYD  
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVF----QALCVLDHYDSRFFLGLGA-----CRQAMGQYDLA 74

Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE 225
           I   S     D    +  +   +     G L EA S L  A E+  +     ++      
Sbjct: 75  IHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134

Query: 226 IL 227
           +L
Sbjct: 135 ML 136

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 13/122 (10%), Positives = 33/122 (27%), Gaps = 15/122 (12%)

Query: 97  NYEFNA------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 150
           +Y F A       +   ++G  +      + A   +    +  +     E    L     
Sbjct: 5   DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSL----- 57

Query: 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
                  + ++    I   +     D K++        ++ +      A++ L       
Sbjct: 58  --GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

Query: 211 PD 212
           P 
Sbjct: 116 PQ 117

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 11/59 (18%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             LK     E       V   + +  +A    G    +  +   A+  L++A  + P D
Sbjct: 26  SMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                  Y E I +  + +  D +  K    +G+A  ++ R EEAV   +    V  D+
Sbjct: 15  LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 17/110 (15%)

Query: 109 QGNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
           +G   Y  G ++ ++  +  A             +G+ L               ++Y+E 
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY------------NLERYEEA 59

Query: 166 IKVGSEVLAY--DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +   + V+    D  N      +  A + I   E          ++    
Sbjct: 60  VDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.7 bits (114), Expect = 7e-06
 Identities = 20/155 (12%), Positives = 37/155 (23%), Gaps = 15/155 (9%)

Query: 97  NYEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSM 153
                      ++G     EG   NA+  +   +             G T          
Sbjct: 58  ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA-------- 109

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               + +Q    I      L     N  AL     ++ +     +A   L +    +P  
Sbjct: 110 ----ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

Query: 214 GTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV 248
             +     +                LL + +  EV
Sbjct: 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV 200

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 6/132 (4%)

Query: 83  EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIH-SSEG 141
              + + + +D     +    +M K+          + +            +G     E 
Sbjct: 5   RAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSAT-----YDKGYQFEEEN 59

Query: 142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS 201
                          L+       + +    +  D K+++A    G    +  +   A+S
Sbjct: 60  PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119

Query: 202 DLSNAHEVSPDD 213
            L    E+ PD+
Sbjct: 120 ALRRCLELKPDN 131

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 117 GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIKVGSEVLAY 175
           G  + A+  Y  A   +      +      A     + S +    +Y +   V +  +  
Sbjct: 4   GLEAQAVPYYEKA---IASGLQGKDL----AECYLGLGSTFRTLGEYRKAEAVLANGVKQ 56

Query: 176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD 218
              +            ++GR E+ V  L      + DD TI  
Sbjct: 57  FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
            N L S      AL  Y  A     +    +   G              Y+  + Y E  
Sbjct: 64  ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV------------YVVKEMYKEAK 111

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  + L    +N    Y  G     + + + A+  L  A E++ +D
Sbjct: 112 DMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G  L    +   AL     A    +N        G             C       DE +
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG------------MCLANEGMLDEAL 179

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
              + V   D  +  A Y  G  Y      E+A+  L  A ++ PD 
Sbjct: 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 6/58 (10%), Positives = 20/58 (34%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +   Y++  +  ++ +  + ++             +  LE A++    A E+    
Sbjct: 33  GSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 8/63 (12%), Positives = 20/63 (31%)

Query: 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
           ++       +     + V  +        V A+       + +  ++  +  L  AH + 
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP 256

Query: 211 PDD 213
           PD 
Sbjct: 257 PDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 9/54 (16%), Positives = 20/54 (37%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 8/63 (12%), Positives = 22/63 (34%)

Query: 151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS 210
           +++      +     + V  +        V A+       + +  ++  +  L  AH ++
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 211 PDD 213
           PD 
Sbjct: 664 PDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 24/203 (11%), Positives = 52/203 (25%), Gaps = 23/203 (11%)

Query: 14  AQEQMNRMSPDDFARIQQQMMANPELMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEI 73
               +   + +D   + +Q      L  + T+        +L+    QL      ++A+ 
Sbjct: 111 IITALPEATHEDIVGVGKQWSGARALEALLTD------AGELRGPPLQLDTGQLVKIAKR 164

Query: 74  GEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLA---K 130
           G   A  +        A   A +N        +        +       L     A    
Sbjct: 165 GGVTAMEAVHASR--NALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 222

Query: 131 KNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY 190
                  +S                    +     + V  +        V A+       
Sbjct: 223 PAQVVAIASHDGG------------KQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGK 270

Query: 191 KDIGRLEEAVSDLSNAHEVSPDD 213
           + +  ++  +  L  AH ++PD 
Sbjct: 271 QALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               +     + V  +        V A+       + +  ++  +  L  AH ++PD 
Sbjct: 304 KQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 361

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +     + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 337 GKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 7/58 (12%), Positives = 19/58 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
               +     + V  +        V A+   G   + +  ++  +  L  AH ++ + 
Sbjct: 643 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 10/113 (8%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           +    +   G    +       L     A           G T     ++ S       +
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAH----------GLTPDQVVAIASNGGKQALE 409

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                + V  +        V A+       + +  ++  +  L   H ++P  
Sbjct: 410 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +        V A+       + +  ++  +  L  AH ++P  
Sbjct: 579 ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 9/59 (15%), Positives = 19/59 (32%)

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                      + V  +        V A+   G   + +  ++  +  L  AH ++PD 
Sbjct: 506 GKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 564

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +     + V  +        V A+   G   + +  ++  +  L  AH ++   
Sbjct: 545 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 10/106 (9%)

Query: 110 GNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDECIK 167
           G  L     R + ++  +  A  +                +  +   C  K  Q+     
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYI--------ANLNKGICSAKQGQFGLAEA 134

Query: 168 VGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                LA   +   A     +     G+L +A              
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           Y++ + Y +      + L  D KN  A   R + Y+ +   ++A      A  + PD  
Sbjct: 18  YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 19/59 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG 214
           Y + +Q+D  +      L +D     A    G+  +  G    A     +    +   G
Sbjct: 29  YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +LA    N+   +  G+ Y +  + + A+  L  A +  P 
Sbjct: 10  AMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 23/154 (14%), Positives = 41/154 (26%), Gaps = 24/154 (15%)

Query: 93  DAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ---KYLLAKKNLQGIHSSEGRTLLLACS 149
           +        A+  L        +      A++        K  L          L     
Sbjct: 173 EFTSGLA-IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL-------ALKL----- 219

Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
                   + ++  E  K+  E L         L    + Y+     ++A+  L  A E 
Sbjct: 220 ---HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276

Query: 210 SPDDGT----IADVLRDAKEILMKEDGHHGPRGL 239
            P++      I    R AK   +     +G  G 
Sbjct: 277 IPNNAYLHCQIGCCYR-AKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 10/123 (8%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
             A M        + +G+   AL+    A++ +Q  H+ +     L    N    Y    
Sbjct: 49  FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG 108

Query: 161 QYDECIKVGSEVL--------AYDAKNVKALYRRGQAYKDIG--RLEEAVSDLSNAHEVS 210
           +  +      +V          Y  ++ +     G      G  + E A      A E  
Sbjct: 109 RLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK 168

Query: 211 PDD 213
           P +
Sbjct: 169 PKN 171

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G      GR+S A+               +    G   +            KT   D   
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV------------KTGAVDRGT 62

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           ++    LA    NVK     G  Y  + + + AV  L    E +P +
Sbjct: 63  ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.2 bits (103), Expect = 6e-05
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G      G      +    +     +   + +  G T +            + ++YD  +
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV------------QVQKYDLAV 96

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            +  +V   +  N    +R G A  ++GR +EA+     A  + P++
Sbjct: 97  PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 15/107 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           G       ++  A+   +           +    G  L                ++DE I
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD------------NLGRFDEAI 130

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                 L       K       +Y+ +GR EEA+     A+E+    
Sbjct: 131 DSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
            + L  +G+   AL  Y  A + +    +            N  +   + +     ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIR-ISPTFA--------DAYSNMGNTLKEMQDVQGALQCY 100

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +  +  +     A       +KD G + EA++    A ++ PD
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 13/121 (10%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
            N    +G    A++ Y  A +      +            N  S   +  +  E +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHY 66

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT----IADVLRDAKE 225
            E +        A    G   K++  ++ A+   + A +++P        +A + +D+  
Sbjct: 67  KEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126

Query: 226 I 226
           I
Sbjct: 127 I 127

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 4/106 (3%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
                  G  + AL+             G +       + A    +          ++ +
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQAL 104

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            V  +    + +      +RG  Y  +G  ++A + L  A  +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 9/58 (15%), Positives = 22/58 (37%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
                +YD  + +    L  + ++ +ALY   +    +G +  A+ +       +P  
Sbjct: 15  LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 10/113 (8%)

Query: 95  QMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM- 153
              Y     + L            +  AL      +  L+ +         +A SL ++ 
Sbjct: 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHL---EAALE-LAMDIQNDRFIAISLLNIA 229

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKN-----VKALYRRGQAYKDIGRLEEAVS 201
           + Y ++      ++   +      +       K L+         G+ ++A  
Sbjct: 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 13/118 (11%)

Query: 91  RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSL 150
           +  +  +   +    L  +G  L + G     +  +  A +       +       +   
Sbjct: 36  QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL------SAIY 89

Query: 151 NSM-SCYLKTKQYDECIKVGSEVLA-----YDAKNV-KALYRRGQAYKDIGRLEEAVS 201
           + + + Y     Y++ ++     L       D     K+    G   K +GR +EA  
Sbjct: 90  SQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 39.3 bits (93), Expect = 5e-04
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 15/106 (14%)

Query: 110 GNELYSEGRFSNALQKYLLA---KKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECI 166
           GN  Y +G +  A++ Y  A            + G                K   YDE I
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY------------KQGDYDEAI 55

Query: 167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
           +   + L  D ++ +A Y  G AY   G  +EA+     A E+ P 
Sbjct: 56  EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 8e-04
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           Y K   YDE I+   + L  D ++ +A Y  G AY   G  +EA+     A E+ P  
Sbjct: 11  YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 20/176 (11%)

Query: 55  LKCAAEQLTHTPPEEVAEIGEKLANA-----SPEEIATM---RARIDAQMNYEFNAAKML 106
           L+ A     +      A+  E+            E        + +  +      AA  L
Sbjct: 60  LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMAL 119

Query: 107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQYDEC 165
            +   +L      S A+  Y  A    +     E R    A  +       ++ +++DE 
Sbjct: 120 DR-AGKLMEPLDLSKAVHLYQQAAAVFEN----EERLRQAAELIGKASRLLVRQQKFDEA 174

Query: 166 IKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215
                +  +   +        K    +            A   +  ++ +    G+
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGS 230

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 98  YEFNAAKMLKKQGNELYSEGRFSNALQKY---LLAKKNLQGIHSSEGRTLLLACSLNSMS 154
           +E ++ +   ++  ++  +      LQ+    L + +        +G+ L          
Sbjct: 65  FETHSVEDAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL---------- 112

Query: 155 CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +      E   + S+ +  + + V+A  + G+ Y   G +  A +  S A     + 
Sbjct: 113 -NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNK 170

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 13/106 (12%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM-SCYLKTKQ 161
              L  +G  L   G     +  +  A +       +       +   + + + Y     
Sbjct: 5   CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTL------SAIYSQLGNAYFYLHD 58

Query: 162 YDECIKVGSEVLA-----YDAKNV-KALYRRGQAYKDIGRLEEAVS 201
           Y + ++     L       D     KA    G   K +G  +EA+ 
Sbjct: 59  YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 161 QYDECIKVGSEVLAYDAKNV-KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +  ++   E L  +     +A Y  G AY+ +G  ++A+++  +A E++PD 
Sbjct: 15  DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	591
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.69
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.61
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.57
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.51
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.48
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.46
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.44
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.43
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.43
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.43
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.42
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.41
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.4
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.36
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.35
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.35
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.34
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.34
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.32
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.32
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.31
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.3
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.3
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.28
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.27
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.27
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.27
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.27
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.23
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.23
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.23
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.23
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.22
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.2
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.18
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.18
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.16
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.12
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.1
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.09
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.03
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.03
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.03
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.02
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.0
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.98
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.97
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.97
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.96
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.96
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.95
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.95
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.95
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.94
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.94
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.91
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.89
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.89
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.84
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.84
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.81
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.8
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.79
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.78
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.77
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.77
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.75
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.75
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.74
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.74
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.73
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.73
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.72
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.71
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.69
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.68
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.67
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.65
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.65
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.65
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.64
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.63
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.63
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.6
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.59
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.56
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.55
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.53
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.5
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.5
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.5
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.47
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.46
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.46
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.45
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.41
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.31
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.22
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.18
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.16
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.03
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.02
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.01
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.98
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.96
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.91
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.89
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.7
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.69
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.68
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.64
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.44
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.29
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.21
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.16
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.01
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.98
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.94
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.79
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.46
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.35
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.3
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.99
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.96
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.07
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	93.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.35
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.64
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.22
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	87.92
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	83.57
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	82.98

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.75  E-value=6.2e-20  Score=164.46  Aligned_cols=117  Identities=19%  Similarity=0.291  Sum_probs=112.3

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP  177 (591)
                      .+|+.++.++++|+.+++.|+|++|+.+|.++|+++|.++.         +|+|+|.||+++|+|++|+.+|+++|+++|
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p   78 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI---------LYSNRAACLTKLMEFQRALDDCDTCIRLDS   78 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHhhHHHhhccHHHHHHHHHHHHHhhh
Confidence            46777899999999999999999999999999999999876         899999999999999999999999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      +++.+|+++|.+|..+|++++|+.+|+++++++|++.+++..|+.+
T Consensus        79 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           79 KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.69  E-value=4e-19  Score=166.48  Aligned_cols=126  Identities=16%  Similarity=0.225  Sum_probs=114.1

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceee-----eeeccccceeeeccccchhhhhhcceeeec-
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-----LACSLNSMSCYLKTKQYDECIKVGSEVLAY-  175 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~-----~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-  175 (591)
                      .+..++++|+.+++.|+|++|+.+|++||+++|.++..+  .+.     ..+|+|+|.|+.++|+|++|+.+|++||++ 
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~--a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE--AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh--hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            467899999999999999999999999999999965432  121     238999999999999999999999999999 


Q ss_pred             ------cccchHHH----HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          176 ------DAKNVKAL----YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       176 ------dP~~~~a~----~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                            +|+++++|    |++|.+|..+|+|++|+.+|++|++++|++..+...+..+++.+..
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~  151 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAID  151 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence                  99999999    9999999999999999999999999999999888888888777754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.67  E-value=3.6e-18  Score=157.62  Aligned_cols=135  Identities=25%  Similarity=0.336  Sum_probs=116.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhcccc--------ccc-cccceeeeeeccccceeeeccccchhhhhhc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG--------IHS-SEGRTLLLACSLNSMSCYLKTKQYDECIKVG  169 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~--------~~~-~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~  169 (591)
                      ..+.+..++.+|+.+++.|+|++|+.+|.++|.+.+.        ++. ....+....+|+|+|.||+++|+|++|+.+|
T Consensus         7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~   86 (162)
T 3rkv_A            7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS   86 (162)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4566889999999999999999999999999998322        110 0001223458999999999999999999999


Q ss_pred             ceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-hHHHHHhHHHHHhhhccCC
Q 007725          170 SEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-TIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       170 ~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~-~a~~~L~~a~~~l~~~~~a  233 (591)
                      +++|+++|+++++|+++|.+|..+|+|++|+.+|++++.++|++. .+...|..++..+.+...+
T Consensus        87 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           87 SEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998 7899999999988776544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=8.4e-18  Score=163.71  Aligned_cols=194  Identities=13%  Similarity=0.050  Sum_probs=159.1

Q ss_pred             Chh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccc
Q 007725           36 NPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL  113 (591)
Q Consensus        36 ~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~  113 (591)
                      +++ +...+...++..+.++....+++.....|+.......... ....++++.+...+++.+...++.+..+..+|..+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY   83 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            444 4444666667778888888888888888887777665422 22344677788999999999999999999999999


Q ss_pred             ccc-----------ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          114 YSE-----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       114 ~~~-----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...           |++++|+..|.++++++|.++.         +|+++|.+|..+|++++|+..|+++++++ +++.+
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~  153 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP---------LHLQRGLVYALLGERDKAEASLKQALALE-DTPEI  153 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence            999           9999999999999999998865         79999999999999999999999999999 99999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      ++++|.+|..+|++++|+..|+++++++|++..++..++.+...+++.+++...++.
T Consensus       154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888888777665543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.64  E-value=8.9e-18  Score=154.49  Aligned_cols=138  Identities=6%  Similarity=-0.038  Sum_probs=126.8

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ...+++.+...++......++.+..++.+|.+|++.|+|++|+.+|.++|+++|.++.         +|+++|.||.+.|
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~   79 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------AHRFLGLLYELEE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTT
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcC
Confidence            3457788888889999999999999999999999999999999999999999999876         8999999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhh-cccccccCCCCChHHHHHhHHHHHh
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD-LSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~-lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ++++|+..|+++|+++|+++.+|+++|.+|..+|++++|+.. +++|++++|+++.++..+..+....
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999887765 5999999999999988887776544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=3.3e-17  Score=152.25  Aligned_cols=121  Identities=11%  Similarity=0.067  Sum_probs=113.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      +-.....+.+.+...++.+..++.+|..+++.|+|++|+.+|++++.++|.++.         +|+++|.||..+|+|++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------~~~~lg~~~~~~g~~~~   88 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------YIMGLAAIYQIKEQFQQ   88 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHccHHH
Confidence            334446677778889999999999999999999999999999999999999876         89999999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      |+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus        89 Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           89 AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999999999864

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=3.5e-17  Score=144.14  Aligned_cols=118  Identities=18%  Similarity=0.205  Sum_probs=111.8

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      ..+..++.+|+.+++.|+|++|+..|.+++.+.|.++.         +|+++|.||+++|+|++|+.+|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~   72 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV   72 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence            35678999999999999999999999999999998865         899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhHHHHHh
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDAKEIL  227 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~------P~~~~a~~~L~~a~~~l  227 (591)
                      .+|+++|.+|..+|++++|+.+|+++++++      |++..++..+..++.++
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999      99999999999887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.60  E-value=3.7e-17  Score=146.18  Aligned_cols=114  Identities=21%  Similarity=0.276  Sum_probs=102.1

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      .+.+.+++++|+.+++.|+|++|+.+|.++|+++|.++.         +|+|+|.||+++|+|++|+.+|+++|+++|++
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~---------~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---------FYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            345778999999999999999999999999999998865         89999999999999999999999999999976


Q ss_pred             -------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          180 -------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       180 -------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                             +++|+++|.++..+|++++|+.+|++++.++|+ +++...|..+
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence                   468999999999999999999999999999885 4555555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=6.4e-17  Score=185.93  Aligned_cols=172  Identities=13%  Similarity=0.092  Sum_probs=151.9

Q ss_pred             ChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccccee
Q 007725           66 PPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTL  144 (591)
Q Consensus        66 ~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l  144 (591)
                      .|++.+++.... .....++++.|...|+++++.+++.+.++.++|+.|.+.|+|++|+.+|+++|+++|+++.      
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~------   78 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------   78 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence            355555544431 2223346778999999999999999999999999999999999999999999999999876      


Q ss_pred             eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725          145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       145 ~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                         +|+|+|.+|.++|+|++|++.|++||+++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++..|+.+.
T Consensus        79 ---a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l  155 (723)
T 4gyw_A           79 ---AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL  155 (723)
T ss_dssp             ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence               89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccCCCCCccchHHHHHH
Q 007725          225 EILMKEDGHHGPRGLLIEEITE  246 (591)
Q Consensus       225 ~~l~~~~~a~~~~~~~i~e~~e  246 (591)
                      ..+++..++.+.+++.++-..+
T Consensus       156 ~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          156 QIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HhcccHHHHHHHHHHHHHhChh
Confidence            9999998888777777654333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.59  E-value=9.3e-17  Score=147.59  Aligned_cols=133  Identities=17%  Similarity=0.099  Sum_probs=119.4

Q ss_pred             hhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcc
Q 007725           91 RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS  170 (591)
Q Consensus        91 ~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~  170 (591)
                      .+.+.+...++.+..++.+|..++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|++|+..|+
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~   79 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------FFLGLGACRQAMGQYDLAIHSYS   79 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------HHHHHHHHHHHHhhHHHHHHHHH
Confidence            344556667788889999999999999999999999999999999876         79999999999999999999999


Q ss_pred             eeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       171 ~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      +++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.....+..+...+...+.
T Consensus        80 ~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  141 (148)
T 2vgx_A           80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL  141 (148)
T ss_dssp             HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC--
T ss_pred             HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998887777777777655443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.57  E-value=1.7e-16  Score=146.63  Aligned_cols=122  Identities=20%  Similarity=0.188  Sum_probs=111.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....+..++.+|..++..|+|++|+.+|.+++.++|.++.         +|+++|.||+++|+|++|+.+|+++|+++|+
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~   77 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI---------YLSNRAAAYSASGQHEKAAEDAELATVVDPK   77 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            4567889999999999999999999999999999998865         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh--HHHHHhHHHHHhhh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKEILMK  229 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~--a~~~L~~a~~~l~~  229 (591)
                      ++.+|+++|.+|..+|++++|+.+|+++++++|++..  +...+..++.++.+
T Consensus        78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  130 (164)
T 3sz7_A           78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE  130 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998  44555555555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.57  E-value=1.6e-16  Score=143.90  Aligned_cols=130  Identities=13%  Similarity=0.119  Sum_probs=117.7

Q ss_pred             hhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcc
Q 007725           91 RIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGS  170 (591)
Q Consensus        91 ~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~  170 (591)
                      .+.+.+...++.+..++.+|..++..|+|++|+..|.+++.++|.++.         +|+++|.||.++|+|++|+..|+
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~   76 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------YFLGLGACRQSLGLYEQALQSYS   76 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHHhhHHHHHHHHH
Confidence            355566677888889999999999999999999999999999998876         79999999999999999999999


Q ss_pred             eeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       171 ~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.....+..+...+..
T Consensus        77 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888777777766654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.55  E-value=1.1e-16  Score=166.99  Aligned_cols=160  Identities=21%  Similarity=0.331  Sum_probs=134.1

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc------ccceeeeeeccccceeeeccc
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      .+...+...+...+..+..++.+|+.+++.|+|++|+.+|.+++.+.|.++..      +..++...+|+|+|.||+++|
T Consensus       131 ~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g  210 (336)
T 1p5q_A          131 KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ  210 (336)
T ss_dssp             CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34444555556678889999999999999999999999999999999987410      011122358999999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC-CCCccc
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH-HGPRGL  239 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a-~~~~~~  239 (591)
                      +|++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++...+ ...++.
T Consensus       211 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~  290 (336)
T 1p5q_A          211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN  290 (336)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999887655 334555


Q ss_pred             hHHHHHH
Q 007725          240 LIEEITE  246 (591)
Q Consensus       240 ~i~e~~e  246 (591)
                      .+....+
T Consensus       291 ~~~~~~~  297 (336)
T 1p5q_A          291 MFERLAE  297 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            5544433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.54  E-value=2.1e-16  Score=171.93  Aligned_cols=145  Identities=23%  Similarity=0.378  Sum_probs=122.1

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc------cccceeeeeeccccceeeecccc
Q 007725           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS------SEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~------~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      +...+.......+..+..++++|+.+++.|+|.+|+.+|.+||.++|.++.      .+...+...+|+|+|.||+++++
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  332 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE  332 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334444555567788999999999999999999999999999999888731      00111224589999999999999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      |++|+.+|+++|+++|+++++||++|.+|..+|+|++|+.+|++|++++|++..++..++.+...++++..
T Consensus       333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998877653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=6.4e-16  Score=149.70  Aligned_cols=190  Identities=12%  Similarity=0.114  Sum_probs=152.5

Q ss_pred             Chh-HHHHhhhhhccCCCchhhhhhhhhcCCCh-hHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccc
Q 007725           36 NPE-LMRIATENMKNMRPEDLKCAAEQLTHTPP-EEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNE  112 (591)
Q Consensus        36 ~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~p-ee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~  112 (591)
                      ||+ +...+...+...+.++....+++.....| .+....... ......++++.+...+...+...+..+..+..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            344 55556666677777777766666555444 333333332 122234467788889999999999999999999999


Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc--chHHHHHhccch
Q 007725          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAY  190 (591)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al  190 (591)
                      ++..|+|++|+..|.+++.+.|.++.  ....+..+|.++|.+|...|+|++|+..|+++|+++|+  ++.+|+++|.+|
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNAT--IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHH--HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            99999999999999999999998762  00111236999999999999999999999999999999  999999999999


Q ss_pred             hhhhhH---------------------------HHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          191 KDIGRL---------------------------EEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       191 ~~lg~~---------------------------eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ...|+.                           ++|+.+|+++++++|++..+...+..++..+
T Consensus       164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~~  227 (228)
T 4i17_A          164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAMI  227 (228)
T ss_dssp             HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhh
Confidence            999999                           9999999999999999999999888876543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.53  E-value=5.4e-16  Score=147.73  Aligned_cols=150  Identities=27%  Similarity=0.391  Sum_probs=125.1

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc-------ceeeeeeccccceeee
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG-------RTLLLACSLNSMSCYL  157 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~-------~~l~~~~~~Nla~~y~  157 (591)
                      ++.++..+.......++.+..++.+|+.++..|+|++|+.+|.+++.+.|.++....       ..+...+|+|+|.||+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   99 (198)
T 2fbn_A           20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN   99 (198)
T ss_dssp             --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444456677889999999999999999999999999999888762100       0001248999999999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~  234 (591)
                      ++|+|++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++..+..
T Consensus       100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887765543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.51  E-value=4e-16  Score=151.76  Aligned_cols=149  Identities=11%  Similarity=0.075  Sum_probs=138.4

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc---
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT---  159 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l---  159 (591)
                      ++++.+...+.+.+...++.+..+..+|..++..|++++|+..|+++++++|.++.         +|+++|.+|...   
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~~~~   89 (217)
T 2pl2_A           19 GRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG---------GYMVLSEAYVALYRQ   89 (217)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhhhh
Confidence            35667888888999999999999999999999999999999999999999999866         799999999999   


Q ss_pred             --------ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          160 --------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       160 --------g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                              |++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++ +++.++..++.+...+++.+
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           90 AEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred             hhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence                    999999999999999999999999999999999999999999999999999 99999999999999998877


Q ss_pred             CCCCCccchH
Q 007725          232 GHHGPRGLLI  241 (591)
Q Consensus       232 ~a~~~~~~~i  241 (591)
                      ++...++..+
T Consensus       169 ~A~~~~~~al  178 (217)
T 2pl2_A          169 EALAQYAKAL  178 (217)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7766666555

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.51  E-value=6e-16  Score=177.87  Aligned_cols=134  Identities=13%  Similarity=0.089  Sum_probs=125.7

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .|+.++++.++|+.+.+.|+|++|+.+|++||+++|+++.         +|+|+|.+|.++|+|++|+..|++||+++|+
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~   75 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------AHSNLASVLQQQGKLQEALMHYKEAIRISPT   75 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            5778999999999999999999999999999999999866         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++.+|+++|.+|..+|++++|+++|++|++++|++..++.+|+.+...+++.+++...+++.+
T Consensus        76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887766665555

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.51  E-value=1.1e-15  Score=159.54  Aligned_cols=145  Identities=30%  Similarity=0.414  Sum_probs=98.4

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------ccceeeeeeccccceeeeccccchhhhhh
Q 007725           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTLLLACSLNSMSCYLKTKQYDECIKV  168 (591)
Q Consensus        97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l~~~~~~Nla~~y~~lg~y~eAi~~  168 (591)
                      ...++.+..++.+|+.+++.|+|.+|+.+|.+++.+.|.+...        ....+...+|+|+|.||+++++|++|+.+
T Consensus       173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~  252 (338)
T 2if4_A          173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH  252 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3456678899999999999999999999999999998876410        00011123799999999999999999999


Q ss_pred             cceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh-ccCCCCCccchH
Q 007725          169 GSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK-EDGHHGPRGLLI  241 (591)
Q Consensus       169 ~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~-~~~a~~~~~~~i  241 (591)
                      |+++|+++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..|..+...... .+.+...+...+
T Consensus       253 ~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999988655443 334444454444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=1.5e-15  Score=162.02  Aligned_cols=156  Identities=7%  Similarity=-0.089  Sum_probs=137.4

Q ss_pred             CCChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-chhHHHHHHHhhhcccccccccc
Q 007725           64 HTPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-FSNALQKYLLAKKNLQGIHSSEG  141 (591)
Q Consensus        64 ~~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~-y~eAi~~Y~kAL~l~p~~~~~e~  141 (591)
                      ...|+....+....... ..+.++.+...+.+.+..+++...++..+|.++...|+ |++|+.+|.++|.++|.++.   
T Consensus        91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~---  167 (382)
T 2h6f_A           91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ---  167 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH---
T ss_pred             hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH---
Confidence            34566666554442111 22346678888999999999999999999999999997 99999999999999999876   


Q ss_pred             ceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725          142 RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (591)
Q Consensus       142 ~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~  221 (591)
                            +|+++|.||..+|+|++|+.+|+++|+++|++..+|++||.++..+|++++|+.+|+++++++|++..++..++
T Consensus       168 ------a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg  241 (382)
T 2h6f_A          168 ------VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRY  241 (382)
T ss_dssp             ------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ------HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence                  89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 007725          222 DAKEILM  228 (591)
Q Consensus       222 ~a~~~l~  228 (591)
                      .+...+.
T Consensus       242 ~~l~~l~  248 (382)
T 2h6f_A          242 FVISNTT  248 (382)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            9988843

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.48  E-value=2e-15  Score=138.61  Aligned_cols=117  Identities=15%  Similarity=0.083  Sum_probs=106.1

Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhc
Q 007725          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRG  187 (591)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg  187 (591)
                      .+|..+..+|++++|+..|.+++...|..+.         .++++|.||++.|+|++|++.|+++|+++|+++.+|+++|
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~---------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg   72 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSI---------KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLG   72 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHT---------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4789999999999999999999999888765         6889999999999999999999999999999999999999


Q ss_pred             cchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          188 QAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       188 ~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      .+|..+|++++|+.+|+++++++|++..++..++.+....++..++
T Consensus        73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a  118 (150)
T 4ga2_A           73 LLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR  118 (150)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred             HHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence            9999999999999999999999999999999999998888765543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.46  E-value=2.4e-15  Score=160.42  Aligned_cols=173  Identities=10%  Similarity=-0.033  Sum_probs=150.6

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHhhcC-ChHH-HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH
Q 007725           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA-SPEE-IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ  124 (591)
Q Consensus        47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~-~~~e-~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~  124 (591)
                      .+..+.++....++++....|.....+..+.... .... ++.+...+.+.+..+++.+..|.++|.++...|+|++|+.
T Consensus       108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~  187 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE  187 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence            3455677777778888788888887776663222 2333 7789999999999999999999999999999999999999


Q ss_pred             HHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh-hhhHHHH----
Q 007725          125 KYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD-IGRLEEA----  199 (591)
Q Consensus       125 ~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~-lg~~eeA----  199 (591)
                      +|.++|.++|.+..         +|+|+|.||.++|+|++|+.+|+++|+++|++..+|++||.+|.. .|++++|    
T Consensus       188 ~~~kal~ldP~~~~---------a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~  258 (382)
T 2h6f_A          188 FIADILNQDAKNYH---------AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER  258 (382)
T ss_dssp             HHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred             HHHHHHHhCccCHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHH
Confidence            99999999999876         899999999999999999999999999999999999999999999 5555888    


Q ss_pred             -hhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          200 -VSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       200 -l~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                       +.+|++|+.++|++..++..++.+....+
T Consensus       259 el~~~~~Al~l~P~~~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          259 EVQYTLEMIKLVPHNESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHccC
Confidence             59999999999999999999998876643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.46  E-value=2.4e-15  Score=133.08  Aligned_cols=122  Identities=26%  Similarity=0.341  Sum_probs=112.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+..++.+|..++..|+|++|+.+|.+++.+.|.++.         +|+++|.||+.+|+|++|+..|+++++++|+
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~   75 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQ   75 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCch
Confidence            3455778999999999999999999999999999998765         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCC-----CChHHHHHhHHHHHhhh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD-----DGTIADVLRDAKEILMK  229 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~-----~~~a~~~L~~a~~~l~~  229 (591)
                      ++.+|+++|.+|..+|++++|+.+|++++.++|+     +..+...+..++.....
T Consensus        76 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           76 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998     78888888888776643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=2.2e-15  Score=140.72  Aligned_cols=150  Identities=13%  Similarity=0.046  Sum_probs=127.4

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.|...+++.++.+++.+..+..+|.+++..|++++|+..|.+++...|.++.         ++.+++.++...+++
T Consensus        19 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~   89 (184)
T 3vtx_A           19 GDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE---------AYYILGSANFMIDEK   89 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH---------HHHHHHHHHHHcCCH
Confidence            35667778888888888888888888888888889999999888888888887755         678888888888888


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +.|+..+.+++.++|.+..+++.+|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+++...+++.+
T Consensus        90 ~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  168 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL  168 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8899888888888888888888899999889999999999999998888888888888888888888777766666655

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=1.8e-15  Score=141.26  Aligned_cols=165  Identities=13%  Similarity=0.051  Sum_probs=138.1

Q ss_pred             HHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccc
Q 007725           41 RIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRF  119 (591)
Q Consensus        41 r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~-~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y  119 (591)
                      ..+.-.....+.++....+++.....|+........... ...++++.+...+.......+.....+...|..+...+++
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEK   89 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCH
Confidence            334444455666777777777766777776665554211 1234566677778888888888999999999999999999


Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHH
Q 007725          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  199 (591)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeA  199 (591)
                      +.|+..|.+++.+.|.++.         ++.++|.+|.++|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|
T Consensus        90 ~~a~~~~~~a~~~~~~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           90 QAAIDALQRAIALNTVYAD---------AYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCccchH---------HHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            9999999999999998865         7899999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCC
Q 007725          200 VSDLSNAHEVSPDDG  214 (591)
Q Consensus       200 l~~lekAl~l~P~~~  214 (591)
                      +.+|++|++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999999763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.44  E-value=1.1e-14  Score=166.27  Aligned_cols=170  Identities=13%  Similarity=-0.013  Sum_probs=142.5

Q ss_pred             hccCCCchhhhhhhhhc--------CCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           47 MKNMRPEDLKCAAEQLT--------HTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        47 m~~~~pe~~~~a~e~l~--------~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      +...++++....+++..        ...|+.......+. .....++++.|...+++.+..+++.+..+..+|..++..|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            44455555555555554        45555555444432 2223445778889999999999999999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHH
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE  197 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e  197 (591)
                      +|++|+..|+++++++|+++.         +|+|+|.||.++|+|++ +..|++||+++|+++.+|+++|.+|..+|+++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~---------~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~  551 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELA---------PKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRV  551 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSH---------HHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999866         89999999999999999 99999999999999999999999999999999


Q ss_pred             HHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          198 EAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       198 eAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      +|+.+|+++++++|++..++..++.+...
T Consensus       552 ~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          552 GAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999888887543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.43  E-value=1.4e-14  Score=126.35  Aligned_cols=121  Identities=20%  Similarity=0.272  Sum_probs=113.3

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+..++.+|..++..|+|++|+.+|.+++...|.++.         +++++|.||...|+|++|+..|+++++++|.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~   82 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK---------LYSNRAACYTKLLEFQLALKDCEECIQLEPT   82 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            4567889999999999999999999999999999888755         7999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      ++.+++++|.+|..+|++++|+.+|++++.++|.+..++..++.+....+
T Consensus        83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           83 FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998876653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.43  E-value=8.1e-15  Score=159.97  Aligned_cols=182  Identities=12%  Similarity=-0.003  Sum_probs=151.9

Q ss_pred             hhhhhccCCC-chhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc----
Q 007725           43 ATENMKNMRP-EDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----  116 (591)
Q Consensus        43 A~e~m~~~~p-e~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~----  116 (591)
                      +.-.+...+. ++....+++.....|.....+.... .....++++.|...+++.+...++ ...+..+|..++..    
T Consensus       109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~  187 (474)
T 4abn_A          109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS  187 (474)
T ss_dssp             HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred             HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence            3334444555 6666666665555666555544432 112234577788889999988888 69999999999999    


Q ss_pred             -----ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc--------ccchhhhhhcceeeeccc---cch
Q 007725          117 -----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT--------KQYDECIKVGSEVLAYDA---KNV  180 (591)
Q Consensus       117 -----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l--------g~y~eAi~~~~~AL~ldP---~~~  180 (591)
                           |+|++|+.+|.+++++.|.++.         +|+++|.+|..+        |+|++|+..|+++++++|   +++
T Consensus       188 ~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  258 (474)
T 4abn_A          188 GDEHSRHVMDSVRQAKLAVQMDVLDGR---------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP  258 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCH
Confidence                 9999999999999999998865         899999999999        999999999999999999   999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~  234 (591)
                      .+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...+++..++.
T Consensus       259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888766543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.43  E-value=7.3e-15  Score=155.75  Aligned_cols=133  Identities=27%  Similarity=0.482  Sum_probs=115.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------cccceeeeeeccccceeeeccccchhhhhhcce
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~  171 (591)
                      ..+.+..++.+|+.+++.|+|++|+.+|+++|++.+..+.       ....+....+|+|+|.||+++++|++|+.+|++
T Consensus       219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~  298 (370)
T 1ihg_A          219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLE  298 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            4556778999999999999999999999999995433210       001122345899999999999999999999999


Q ss_pred             eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      +|+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..|..++..+++.+
T Consensus       299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.42  E-value=2.7e-14  Score=137.86  Aligned_cols=130  Identities=9%  Similarity=0.027  Sum_probs=96.9

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR  118 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~  118 (591)
                      ++..+...+...+.++....+++.....|+........-..                 ...........++|.++++.|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----------------~~~~~~~~~~~~lg~~~~~~g~   69 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----------------KNSEISSKLATELALAYKKNRN   69 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----------------TTSHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----------------chhhhhHHHHHHHHHHHHHCCC
Confidence            45556666666666666666665555555554443321000                 0011122334559999999999


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG  194 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg  194 (591)
                      |++|+..|.++|+++|.++.         +|+++|.||...|+|++|+.+|+++|+++|+++.+|+++|.+|+..+
T Consensus        70 ~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           70 YDKAYLFYKELLQKAPNNVD---------CLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999876         89999999999999999999999999999999999999988875543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.42  E-value=1.4e-14  Score=139.89  Aligned_cols=117  Identities=13%  Similarity=0.066  Sum_probs=109.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccc----------------cceeeeccccchhhh
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN----------------SMSCYLKTKQYDECI  166 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N----------------la~~y~~lg~y~eAi  166 (591)
                      +..+..+|..++..|+|++|+.+|.+++.++|.++.         +|++                +|.||.+.|+|++|+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~   74 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE---------MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY   74 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH---------HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHH
Confidence            557888999999999999999999999999998865         6777                999999999999999


Q ss_pred             hhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          167 KVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       167 ~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      ..|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+....+
T Consensus        75 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           75 LFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999876554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.41  E-value=2.3e-14  Score=121.71  Aligned_cols=115  Identities=23%  Similarity=0.275  Sum_probs=108.2

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+..++.+|..++..|+|++|+..|.+++...|.++.         ++.++|.||...|+|++|+..|+++++++|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~   73 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   73 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH
Confidence            4678899999999999999999999999999888765         7899999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      +++++|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus        74 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           74 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999888887754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.40  E-value=1.5e-14  Score=128.18  Aligned_cols=102  Identities=8%  Similarity=-0.037  Sum_probs=91.6

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .++.+|..+++.|+|++|+..|++++.++|.++.         +|+++|.||...|++++|+..|+++++++|+++.+++
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   89 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   89 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4678899999999999999999999999999876         8999999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                      ++|.+|..+|++++|+..|+++++++|++..
T Consensus        90 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           90 ALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999998754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.39  E-value=3.4e-14  Score=122.73  Aligned_cols=123  Identities=25%  Similarity=0.244  Sum_probs=115.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+..++.+|..++..|+|++|+..|.+++...|.++.         ++.++|.||...|+|++|+..|.++++++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   78 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV---------YFCNRAAAYSKLGNYAGAVQDCERAICIDPA   78 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence            4556788999999999999999999999999999887754         7899999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      ++.+++.+|.++..+|++++|+.+|++++.++|++..++..++.+...+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           79 YSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999998887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=2.7e-14  Score=138.11  Aligned_cols=138  Identities=14%  Similarity=0.102  Sum_probs=124.7

Q ss_pred             HHHHHHHHhhhhcccccc-hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725           83 EEIATMRARIDAQMNYEF-NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~-~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      ++++.+...+.+.+...+ .....+..+|.+++..|+|++|+.+|.+++.+.|.++.         +|.++|.||..+|+
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~   91 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN---------AYIGKSAAYRDMKN   91 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH---------HHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH---------HHHHHHHHHHHccc
Confidence            356677777888877776 66778888999999999999999999999999998765         79999999999999


Q ss_pred             chhhhhhcceeeeccccch-------HHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHHHhhh
Q 007725          162 YDECIKVGSEVLAYDAKNV-------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEILMK  229 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~-------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~l~~  229 (591)
                      |++|+..|+++++++|++.       .+|+++|.++..+|++++|+.+|+++++++|+  +..++..++.+....++
T Consensus        92 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A           92 NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH
Confidence            9999999999999999998       77999999999999999999999999999999  88999999998877654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3.1e-14  Score=126.68  Aligned_cols=122  Identities=31%  Similarity=0.471  Sum_probs=110.3

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA  177 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP  177 (591)
                      ..+..+..++.+|..++..|+|++|+.+|.+++.+.|.++.      ...+|+++|.||+..++|++|+..|+++++++|
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   96 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD------QAVLHRNRAACHLKLEDYDKAETEASKAIEKDG   96 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH------HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence            34566788999999999999999999999999999887521      133799999999999999999999999999999


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      +++.+|+++|.+|..+|++++|+.+|+++++++|++..++..+..+..
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999998888877643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=1.6e-14  Score=157.70  Aligned_cols=170  Identities=11%  Similarity=0.068  Sum_probs=146.1

Q ss_pred             hcCCChhHHHHHHHH-hhcCChHHH-HHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc
Q 007725           62 LTHTPPEEVAEIGEK-LANASPEEI-ATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS  139 (591)
Q Consensus        62 l~~~~pee~~a~~~k-~~~~~~~e~-~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~  139 (591)
                      +....|.....+..+ .......++ +.|...+.+.++..+..+..+..+|.+++..|+|++|+.+|.+++++.|. +. 
T Consensus        94 ~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~-  171 (474)
T 4abn_A           94 VLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KV-  171 (474)
T ss_dssp             HHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HH-
T ss_pred             HhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HH-
Confidence            344445444444443 222234456 78888899999999999999999999999999999999999999999887 33 


Q ss_pred             ccceeeeeeccccceeeecc---------ccchhhhhhcceeeeccccchHHHHHhccchhhh--------hhHHHHhhh
Q 007725          140 EGRTLLLACSLNSMSCYLKT---------KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI--------GRLEEAVSD  202 (591)
Q Consensus       140 e~~~l~~~~~~Nla~~y~~l---------g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l--------g~~eeAl~~  202 (591)
                              +|.++|.+|..+         |+|++|+..|+++++++|+++.+|+++|.+|..+        |++++|+.+
T Consensus       172 --------~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~  243 (474)
T 4abn_A          172 --------SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA  243 (474)
T ss_dssp             --------HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence                    799999999999         9999999999999999999999999999999999        999999999


Q ss_pred             cccccccCC---CCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          203 LSNAHEVSP---DDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       203 lekAl~l~P---~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      |+++++++|   ++..++..++.+...++++.++...++..+
T Consensus       244 ~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999   999999999999999988777666655544

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=2.9e-14  Score=140.35  Aligned_cols=194  Identities=15%  Similarity=0.028  Sum_probs=141.7

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccc--cch-HHHHHHHhccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNY--EFN-AAKMLKKQGNELY  114 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~--~~~-~a~~lk~~Gn~~~  114 (591)
                      +++.|...+...+.++....+++.....|.......... .....++++.+...++..+..  .+. .+..+..+|..+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            444455555555566655555555444444332222211 111223445566555555551  222 2556899999999


Q ss_pred             ccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725          115 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG  194 (591)
Q Consensus       115 ~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg  194 (591)
                      ..|+|++|+.+|.+++.+.|.++.         +|.++|.||...|+|++|+..|+++++++|.++.+|+++|..++..+
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  156 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLD---------MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK  156 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence            999999999999999999998765         79999999999999999999999999999999999999994444445


Q ss_pred             hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh---ccCCCCCccchH
Q 007725          195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK---EDGHHGPRGLLI  241 (591)
Q Consensus       195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~---~~~a~~~~~~~i  241 (591)
                      ++++|+.+|+++++++|++..++..++.+...+++   ...+...++..+
T Consensus       157 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999888876   344444444444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.37  E-value=1.1e-13  Score=137.19  Aligned_cols=190  Identities=12%  Similarity=0.054  Sum_probs=151.9

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhH---HHHHHHHh-hcCChHHHHHHHHhhhhcccccc---hHHHHHHHhcc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEE---VAEIGEKL-ANASPEEIATMRARIDAQMNYEF---NAAKMLKKQGN  111 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee---~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~---~~a~~lk~~Gn  111 (591)
                      +...+...++..+.++....++++....|..   ........ .....+++..|...++..+...+   ....+++.+|.
T Consensus        18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~   97 (261)
T 3qky_A           18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM   97 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence            6666888888888888888888887776655   44443331 22234456778888888877644   56789999999


Q ss_pred             cccc--------cccchhHHHHHHHhhhccccccccccceeeeeec--------------cccceeeeccccchhhhhhc
Q 007725          112 ELYS--------EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACS--------------LNSMSCYLKTKQYDECIKVG  169 (591)
Q Consensus       112 ~~~~--------~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~--------------~Nla~~y~~lg~y~eAi~~~  169 (591)
                      +++.        .|+|++|+..|.+++...|.++..      ..++              +++|.||.+.|+|++|+..|
T Consensus        98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELV------DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHhcccccccchhHHHHHHHHHHHHHHCcCchhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999        999999999999999999987641      1122              78999999999999999999


Q ss_pred             ceeeecccc---chHHHHHhccchhhh----------hhHHHHhhhcccccccCCCCC---hHHHHHhHHHHHhhhccCC
Q 007725          170 SEVLAYDAK---NVKALYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDG---TIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       170 ~~AL~ldP~---~~~a~~~rg~al~~l----------g~~eeAl~~lekAl~l~P~~~---~a~~~L~~a~~~l~~~~~a  233 (591)
                      +++++.+|+   ...+++++|.+|..+          |++++|+..|+++++.+|+++   .+...+..+...+++.++.
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            999999998   678999999999987          999999999999999999986   4566677777777666554


Q ss_pred             C
Q 007725          234 H  234 (591)
Q Consensus       234 ~  234 (591)
                      .
T Consensus       252 ~  252 (261)
T 3qky_A          252 A  252 (261)
T ss_dssp             T
T ss_pred             h
Confidence            3

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=2.9e-14  Score=147.23  Aligned_cols=203  Identities=9%  Similarity=-0.030  Sum_probs=151.4

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      ++..+...++..+.++....++++....|........... ....++++.+...+++.+...+..+..+..+|..+...|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence            4555666666667777777777766666666555444321 112345677888888888888999999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccce-eeeeeccccceeeeccccchhhhhhcceeeecccc--chHHHHHhccchhhhh
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEGRT-LLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIG  194 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~-l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg  194 (591)
                      +|++|+..|.+++.+.|.++...... ....++.+++.+|...|++++|+..|+++++++|+  ++.+++++|.+|..+|
T Consensus       148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            99999999999999988875411000 01234456699999999999999999999999999  8999999999999999


Q ss_pred             hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++++|+..|+++++++|++..++..++.+....++..++...++..+
T Consensus       228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  274 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL  274 (365)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887776665555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=1.1e-14  Score=152.02  Aligned_cols=145  Identities=15%  Similarity=0.070  Sum_probs=102.1

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      ++.+...+...+...+..+..+..+|..+++.|+|++|+.+|.+++.+.|.+..         +|++++.+|.+.|++++
T Consensus        49 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g~~~~  119 (388)
T 1w3b_A           49 LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID---------GYINLAAALVAAGDMEG  119 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHSCSSH
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH---------HHHHHHHHHHHcCCHHH
Confidence            344555555555666667777777777777777777777777777777766644         57777777777777777


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      |+..|+++++++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.+....++...+...++
T Consensus       120 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  193 (388)
T 1w3b_A          120 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE  193 (388)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777666655444433333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.36  E-value=3.1e-14  Score=137.20  Aligned_cols=193  Identities=13%  Similarity=0.024  Sum_probs=149.0

Q ss_pred             HHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc
Q 007725           40 MRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR  118 (591)
Q Consensus        40 ~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~  118 (591)
                      ...+...+...+.++....++++....|........... .....+++.+...++..+...+.....+..+|..++..|+
T Consensus        27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  106 (243)
T 2q7f_A           27 GQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM  106 (243)
T ss_dssp             ---------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence            334555556667777777777776666665555444321 1123456677888888888888889999999999999999


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHH
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE  198 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ee  198 (591)
                      |++|+..|.+++.+.|.++.         ++.+++.+|...|++++|+..|+++++++|++..+++.+|.++...|++++
T Consensus       107 ~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          107 YKEAKDMFEKALRAGMENGD---------LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCSHH---------HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999887765         788999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          199 AVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       199 Al~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      |+..|++++.++|++..++..++.+....++...+...++..+
T Consensus       178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  220 (243)
T 2q7f_A          178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI  220 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            9999999999999999999999999988887766655555444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.35  E-value=7.1e-14  Score=120.91  Aligned_cols=120  Identities=21%  Similarity=0.305  Sum_probs=110.6

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-  179 (591)
                      +.+..+..+|..++..|+|++|+.+|.+++...|.++.         +++++|.||...|+|++|+..|++++.++|.+ 
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH---------HHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence            34678899999999999999999999999999888754         78999999999999999999999999999988 


Q ss_pred             ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       180 ------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                            +.+++++|.+|..+|++++|+.+|++++.++| +..++..+..+...+++.
T Consensus        73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence                  99999999999999999999999999999999 688888999888877654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.35  E-value=6.1e-14  Score=146.32  Aligned_cols=150  Identities=12%  Similarity=0.055  Sum_probs=122.5

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.+...+.+.+...+..+..+..+|..+...|++++|+..|++++.+.|.++.         +|.++|.+|...|+|
T Consensus       149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~  219 (388)
T 1w3b_A          149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD---------AYINLGNVLKEARIF  219 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCT
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH---------HHHHHHHHHHHcCCH
Confidence            34556677777777777888888888888888888888888888888888887754         788888888888899


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++|+..|++++.++|+++.+++++|.+|...|++++|+..|+++++++|+++.++..++.+....++..++...++..+
T Consensus       220 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  298 (388)
T 1w3b_A          220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL  298 (388)
T ss_dssp             THHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999988888888898888888999999999999999999999988888888888888888877776665544444433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.35  E-value=4.4e-14  Score=132.02  Aligned_cols=106  Identities=19%  Similarity=0.111  Sum_probs=95.9

Q ss_pred             ccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch----------hhhhhcceeeeccccchHH
Q 007725          113 LYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD----------ECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       113 ~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~----------eAi~~~~~AL~ldP~~~~a  182 (591)
                      .-+.++|++|+.+|.++++++|.++.         +|+|+|.|+..+++++          +||..|++||+++|++..+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~ae---------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A   82 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEA   82 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHH
Confidence            44667899999999999999999977         8999999999998865          9999999999999999999


Q ss_pred             HHHhccchhhhh-----------hHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          183 LYRRGQAYKDIG-----------RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       183 ~~~rg~al~~lg-----------~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ||++|.+|..+|           +|++|+.+|++|++++|++...+..+..+.+..
T Consensus        83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            999999999885           899999999999999999988887777765443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=3.4e-14  Score=146.71  Aligned_cols=190  Identities=11%  Similarity=0.023  Sum_probs=145.3

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHH----------hcc
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKK----------QGN  111 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~----------~Gn  111 (591)
                      +.-.....+.++....+++.....|........... ....++++.+...+.+.+...+.....+..          +|.
T Consensus       106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~  185 (365)
T 4eqf_A          106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSK  185 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHH
Confidence            333444556666666666665555655444433311 112334566777777777766665555544          499


Q ss_pred             cccccccchhHHHHHHHhhhcccc--ccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          112 ELYSEGRFSNALQKYLLAKKNLQG--IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       112 ~~~~~g~y~eAi~~Y~kAL~l~p~--~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      .+...|+|++|+.+|.+++.+.|.  ++.         +|+++|.+|...|+|++|+..|+++++++|+++.+|+++|.+
T Consensus       186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          186 SPVDSSVLEGVKELYLEAAHQNGDMIDPD---------LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHHhCcCccCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999988  543         789999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      |..+|++++|+..|+++++++|++..++..++.+...+++..++...++..+
T Consensus       257 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          257 LANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988877776666655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.34  E-value=4.2e-14  Score=145.25  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=135.1

Q ss_pred             HHHHHHHHhhhhcccccch--HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           83 EEIATMRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~--~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ++++.+...+...+...+.  .+..+..+|..++..|+|++|+.+|.+++.+.|.++.         +|+++|.+|...|
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~g  265 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATLANGN  265 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHcC
Confidence            4566677777777777777  7889999999999999999999999999999888765         7899999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC-----------ChHHHHHhHHHHHhhh
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----------GTIADVLRDAKEILMK  229 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-----------~~a~~~L~~a~~~l~~  229 (591)
                      +|++|+..|+++++++|+++.+++++|.+|..+|++++|+.+|++++.++|++           ..++..++.+...+++
T Consensus       266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  345 (368)
T 1fch_A          266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ  345 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999988           7899999999999988


Q ss_pred             ccCCCCCccchHHHHH
Q 007725          230 EDGHHGPRGLLIEEIT  245 (591)
Q Consensus       230 ~~~a~~~~~~~i~e~~  245 (591)
                      .+.+...+...++...
T Consensus       346 ~~~A~~~~~~~l~~~~  361 (368)
T 1fch_A          346 SDAYGAADARDLSTLL  361 (368)
T ss_dssp             GGGHHHHHTTCHHHHH
T ss_pred             hHhHHHhHHHHHHHHH
Confidence            7776555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.34  E-value=7.5e-14  Score=129.80  Aligned_cols=133  Identities=11%  Similarity=0.060  Sum_probs=117.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee-eeccccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY  162 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~-y~~lg~y  162 (591)
                      +++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.         ++.++|.| |+..|+|
T Consensus        25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE---------LYAALATVLYYQASQH   95 (177)
T ss_dssp             --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH---------HHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---------HHHHHHHHHHHhcCCc
Confidence            4455566666666677888899999999999999999999999999999998765         78999999 8899999


Q ss_pred             --hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          163 --DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       163 --~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                        ++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++.++|++......+..+..
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence              999999999999999999999999999999999999999999999999998876665555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.33  E-value=6.4e-14  Score=127.08  Aligned_cols=125  Identities=21%  Similarity=0.279  Sum_probs=111.7

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      .+.+..+..+|..++..|+|++|+..|.+++.+.|.++.         +|+++|.||...|+|++|+..|+++++++|.+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            345778999999999999999999999999999888765         79999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH--HHHhhhccCC
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGH  233 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a--~~~l~~~~~a  233 (591)
                      +.+|+++|.++..+|++++|+.+|++++.++|++..++..+..+  ....++.+++
T Consensus        81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A  136 (166)
T 1a17_A           81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  136 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888777666  3344444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.32  E-value=8.6e-14  Score=139.73  Aligned_cols=156  Identities=14%  Similarity=0.130  Sum_probs=135.8

Q ss_pred             CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc
Q 007725           80 ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT  159 (591)
Q Consensus        80 ~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l  159 (591)
                      ....++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++...|.++.         +|.++|.+|...
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~  219 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ---------LWNKLGATLANG  219 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHT
T ss_pred             HHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHc
Confidence            34556777788888888888888899999999999999999999999999999888765         789999999999


Q ss_pred             ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC------------CChHHHHHhHHHHHh
Q 007725          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------------DGTIADVLRDAKEIL  227 (591)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~------------~~~a~~~L~~a~~~l  227 (591)
                      |++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|++++.++|+            +..++..++.+...+
T Consensus       220 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999            678889999998888


Q ss_pred             hhccCCCCCccchHHHH
Q 007725          228 MKEDGHHGPRGLLIEEI  244 (591)
Q Consensus       228 ~~~~~a~~~~~~~i~e~  244 (591)
                      ++.+.+...++..++..
T Consensus       300 g~~~~A~~~~~~~l~~~  316 (327)
T 3cv0_A          300 NRPDLVELTYAQNVEPF  316 (327)
T ss_dssp             TCHHHHHHHTTCCSHHH
T ss_pred             CCHHHHHHHHHHHHHhc
Confidence            87766555555444433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.32  E-value=1.5e-13  Score=150.38  Aligned_cols=129  Identities=20%  Similarity=0.254  Sum_probs=115.0

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      +.+..++.+|+.+++.|+|++|+.+|++++++.|.++.         +|+|+|.||.++|+|++|+.+|+++++++|+++
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   74 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKYI   74 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence            44667899999999999999999999999999988765         899999999999999999999999999999999


Q ss_pred             HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH--HHHhhhccCCCCCcc
Q 007725          181 KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA--KEILMKEDGHHGPRG  238 (591)
Q Consensus       181 ~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a--~~~l~~~~~a~~~~~  238 (591)
                      .+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+  ....++.+++...++
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999988  555566666655544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.32  E-value=4.3e-14  Score=142.11  Aligned_cols=200  Identities=8%  Similarity=-0.072  Sum_probs=161.5

Q ss_pred             HhhChh-HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhc
Q 007725           33 MMANPE-LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQG  110 (591)
Q Consensus        33 ~~~~p~-l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~G  110 (591)
                      +-.|++ ++..+...+...+.++....++++....|.........+ ......+++.+...+++.+...+..+..+..+|
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   97 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG   97 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            344555 555666667777777777777776555555443332211 111233566777778888888888899999999


Q ss_pred             ccccccc-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          111 NELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       111 n~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      ..++..| ++++|+.+|.+++.+.|.++.         +|.++|.+|...|+|++|+..|+++++++|++..+++.+|.+
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  168 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGP---------AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE  168 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            9999999 999999999999999988765         799999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      |...|++++|+..|+++++++|++..++..++.+....++...+...++..+
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988887666555555444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=2.6e-14  Score=163.03  Aligned_cols=149  Identities=13%  Similarity=-0.048  Sum_probs=133.8

Q ss_pred             ChHHHHHHHHhhhhcc--------cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccc
Q 007725           81 SPEEIATMRARIDAQM--------NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS  152 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l--------~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nl  152 (591)
                      ...+++.+...+++.+        ...++.+..+..+|..++..|+|++|+..|.++++++|.++.         +|+++
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~l  473 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------LVWYR  473 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------HHHHH
T ss_pred             cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------HHHHH
Confidence            3445566777777777        778889999999999999999999999999999999999866         89999


Q ss_pred             ceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       153 a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      |.+|+.+|+|++|+..|+++|+++|+++.+|+++|.+|..+|+|++ +.+|+++++++|++..++..++.+...++++++
T Consensus       474 g~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~  552 (681)
T 2pzi_A          474 AVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG  552 (681)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999887766


Q ss_pred             CCCCccc
Q 007725          233 HHGPRGL  239 (591)
Q Consensus       233 a~~~~~~  239 (591)
                      +...++.
T Consensus       553 A~~~~~~  559 (681)
T 2pzi_A          553 AVRTLDE  559 (681)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.31  E-value=1.2e-13  Score=120.73  Aligned_cols=116  Identities=12%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---hH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---VK  181 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---~~  181 (591)
                      .++.+|..++..|+|++|+..|.+++...|.++.      ...+++++|.||++.|+|++|+..|+++++++|++   +.
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~   77 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAG   77 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHH
Confidence            4678899999999999999999999999888762      11378899999999999999999999999999999   89


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      +++++|.+|..+|++++|+..|++++...|++..+...+..+...
T Consensus        78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           78 GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999988776665555443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=5.2e-14  Score=136.37  Aligned_cols=158  Identities=12%  Similarity=0.087  Sum_probs=129.8

Q ss_pred             HHHHHHHhhhhcccccchH-------HHHHHHhcccccccccchhHHHHHHHhhhccccccc-----------------c
Q 007725           84 EIATMRARIDAQMNYEFNA-------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-----------------S  139 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~-------a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-----------------~  139 (591)
                      +++.+...+...+...+..       +..+..+|..+...|+|++|+..|.+++.+.|....                 .
T Consensus        53 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~  132 (258)
T 3uq3_A           53 EYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA  132 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH
Confidence            4555666666666655544       788999999999999999999999999995432000                 0


Q ss_pred             ccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHH
Q 007725          140 EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADV  219 (591)
Q Consensus       140 e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~  219 (591)
                      ...+....+|.++|.+|...|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|++..++..
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          133 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            00111234789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhhhccCCCCCccchH
Q 007725          220 LRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       220 L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++.+...+++.+.+...++..+
T Consensus       213 l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          213 KATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999988877766666655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.30  E-value=1.3e-14  Score=134.58  Aligned_cols=110  Identities=12%  Similarity=-0.018  Sum_probs=102.9

Q ss_pred             HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (591)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l  203 (591)
                      ..|.+++.++|.++.         +++++|.+|++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+.+|
T Consensus        23 ~~l~~al~l~p~~~~---------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~   93 (151)
T 3gyz_A           23 ATLKDINAIPDDMMD---------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLY   93 (151)
T ss_dssp             CCTGGGCCSCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHH
Confidence            457888999998876         79999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       204 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                      +++++++|+++.++..++.+...+++..++...++..+.
T Consensus        94 ~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A           94 AVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998888877777663

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.30  E-value=1e-13  Score=153.64  Aligned_cols=141  Identities=12%  Similarity=0.020  Sum_probs=95.0

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      ++.+...+++.+...+..+..+..+|..++..|+|++|+.+|+++++++|.++.         +|+++|.+|..+|+|++
T Consensus         5 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~   75 (568)
T 2vsy_A            5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE---------AVARLGRVRWTQQRHAE   75 (568)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHCCCHHH
Confidence            445555666666666777777777777777777888888888888777776654         67777777777788888


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh---hhccCCC
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL---MKEDGHH  234 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l---~~~~~a~  234 (591)
                      |++.|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+   ++..++.
T Consensus        76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~  148 (568)
T 2vsy_A           76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS  148 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence            888888877777777777777888877778888888888887777777777777777777766   5544433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.29  E-value=1.6e-13  Score=133.70  Aligned_cols=187  Identities=11%  Similarity=0.013  Sum_probs=148.6

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e  121 (591)
                      +...+...+.++....++++....|.......... .....++++.+...+.+.+...+.....+..+|..++..|+|++
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  123 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE  123 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence            44455566677776666666555555544433321 11123456677777888877788888999999999999999999


Q ss_pred             HHHHHHHhhh--ccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHH
Q 007725          122 ALQKYLLAKK--NLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  199 (591)
Q Consensus       122 Ai~~Y~kAL~--l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeA  199 (591)
                      |+.+|.+++.  ..|.++.         +++++|.+|...|++++|+..|+++++++|.+..+++.+|.+|..+|++++|
T Consensus       124 A~~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          124 AYQRLLEASQDTLYPERSR---------VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHHTTCTTCTTHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCccCcccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999  5555433         7889999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          200 VSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       200 l~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      +..|+++++++|++..++..+..+....++.+.+...++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  233 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGL  233 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999999999999888888887776655544433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=6.5e-14  Score=138.71  Aligned_cols=140  Identities=13%  Similarity=0.059  Sum_probs=122.9

Q ss_pred             HHHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-
Q 007725           83 EEIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-  158 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~---a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-  158 (591)
                      ++++.|...+...+...+..   +.+++.+|.+++..|+|++|+..|.+++.+.|.++.      ...+++++|.||+. 
T Consensus        29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~a~~~lg~~~~~~  102 (261)
T 3qky_A           29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------VPQAEYERAMCYYKL  102 (261)
T ss_dssp             TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------hHHHHHHHHHHHHHh
Confidence            45667777788887776666   899999999999999999999999999999887654      23478999999999 


Q ss_pred             -------cccchhhhhhcceeeeccccchHHH-----------------HHhccchhhhhhHHHHhhhcccccccCCCC-
Q 007725          159 -------TKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-  213 (591)
Q Consensus       159 -------lg~y~eAi~~~~~AL~ldP~~~~a~-----------------~~rg~al~~lg~~eeAl~~lekAl~l~P~~-  213 (591)
                             .|++++|+..|+++++++|++..++                 +.+|.+|...|+|++|+..|+++++..|++ 
T Consensus       103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  182 (261)
T 3qky_A          103 SPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP  182 (261)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             cccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence                   9999999999999999999987666                 899999999999999999999999999985 


Q ss_pred             --ChHHHHHhHHHHHhh
Q 007725          214 --GTIADVLRDAKEILM  228 (591)
Q Consensus       214 --~~a~~~L~~a~~~l~  228 (591)
                        ..++..++.+...++
T Consensus       183 ~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          183 WADDALVGAMRAYIAYA  199 (261)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhc
Confidence              457888888888773

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.29  E-value=1.4e-13  Score=125.96  Aligned_cols=149  Identities=12%  Similarity=0.144  Sum_probs=130.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+..+..+..+|..++..|++++|+.+|.+++...|.++.         ++.+++.+|...|+++
T Consensus        23 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~   93 (186)
T 3as5_A           23 RYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK---------VATVLGLTYVQVQKYD   93 (186)
T ss_dssp             CHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHH
Confidence            4556777777777777778889999999999999999999999999999887754         7889999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +|+..++++++++|.+..+++.+|.++...|++++|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus        94 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A           94 LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999888877666555544444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.28  E-value=5.6e-13  Score=129.00  Aligned_cols=131  Identities=17%  Similarity=0.194  Sum_probs=120.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      ++..+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.         +|+++|.||...|+|+
T Consensus       120 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~  190 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR---------GYSNRAAALAKLMSFP  190 (258)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHhCCHH
Confidence            4556677777777788899999999999999999999999999999999988765         7999999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccC------CCCChHHHHHhHH
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVS------PDDGTIADVLRDA  223 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~------P~~~~a~~~L~~a  223 (591)
                      +|+..|+++++++|+++.+|+.+|.+|..+|++++|+.+|+++++++      |++..++..|..+
T Consensus       191 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          191 EAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999      8888888777664

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.28  E-value=9.9e-13  Score=133.19  Aligned_cols=180  Identities=20%  Similarity=0.281  Sum_probs=137.4

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHH------------HHHhcccc
Q 007725           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKM------------LKKQGNEL  113 (591)
Q Consensus        47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~------------lk~~Gn~~  113 (591)
                      +...+.++....++......|........... ....++++.+...+...+...+.....            ....|..+
T Consensus       165 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  244 (359)
T 3ieg_A          165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL  244 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555444333311 112234555666666666655554443            33558889


Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh
Q 007725          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  193 (591)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l  193 (591)
                      ++.|+|++|+..|.+++...|.++.     ....++.++|.||.+.|+|++|+..|+++++++|+++.+|+++|.+|..+
T Consensus       245 ~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (359)
T 3ieg_A          245 IRDGRYTDATSKYESVMKTEPSVAE-----YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE  319 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCchH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            9999999999999999999888653     12235778999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       194 g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      |++++|+.+|+++++++|++..++..|..++..+++.+
T Consensus       320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999988887543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.27  E-value=2.3e-13  Score=136.81  Aligned_cols=141  Identities=11%  Similarity=-0.041  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+.....+..+|..++..|++++|+..|.+++...|.++.         ++.++|.+|...|+|+
T Consensus       140 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~l~~~~~~~~~~~  210 (330)
T 3hym_B          140 EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF---------VMHEVGVVAFQNGEWK  210 (330)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHcccHH
Confidence            3445556666666666666666666777777777777777777777777666544         5667777777777777


Q ss_pred             hhhhhcceeeecc---------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          164 ECIKVGSEVLAYD---------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       164 eAi~~~~~AL~ld---------P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      +|+..+++++++.         |.++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++...+
T Consensus       211 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          211 TAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence            7777777777765         566677777777777777777777777777777777777777777776666654443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.27  E-value=2.3e-13  Score=131.10  Aligned_cols=176  Identities=13%  Similarity=0.045  Sum_probs=139.5

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e  121 (591)
                      +.-.....+.++....+++.....|.......... .....++++.+...+.+.+...+.....+..+|..++..|+|++
T Consensus        64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  143 (243)
T 2q7f_A           64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKL  143 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence            33344455566666655555544554444333221 11123356677777888888888888999999999999999999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      |+..|.+++.+.|.++.         ++.++|.+|.+.|+|++|+..|+++++++|+++.+++.+|.+|..+|++++|+.
T Consensus       144 A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTE---------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             HHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHHHHhCCccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999888765         789999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHh
Q 007725          202 DLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       202 ~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +|+++++++|++..++..+..+....
T Consensus       215 ~~~~~~~~~p~~~~~~~~~~~l~~~~  240 (243)
T 2q7f_A          215 MLDKAIDIQPDHMLALHAKKLLGHHH  240 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHTC-----
T ss_pred             HHHHHHccCcchHHHHHHHHHHHhhc
Confidence            99999999999999988888765543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.27  E-value=1.3e-13  Score=120.25  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=89.4

Q ss_pred             ccccchhHHHHHHHhhhc---cccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725          115 SEGRFSNALQKYLLAKKN---LQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (591)
Q Consensus       115 ~~g~y~eAi~~Y~kAL~l---~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~  191 (591)
                      ..|+|++|+.+|.++|++   +|.++.         +|+++|.||+.+|+|++|+..|+++++++|+++.+++++|.+|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   72 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAE---------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY   72 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            468999999999999999   466544         89999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       192 ~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      .+|++++|+..|++++.++|+++.+......+....
T Consensus        73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~  108 (117)
T 3k9i_A           73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA  108 (117)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999988766555544433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.27  E-value=2.6e-13  Score=139.30  Aligned_cols=203  Identities=10%  Similarity=-0.046  Sum_probs=150.6

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      ++..+...+...+.++....++++....|........... ....++++.+...+...+...+..+..+..+|..+...|
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  146 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            3344445555556666666666665556665554443311 112335667778888888888888899999999999999


Q ss_pred             cchhHHHHHHHhhhcccccccccc----------------------------------------cee--eeeecccccee
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEG----------------------------------------RTL--LLACSLNSMSC  155 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~----------------------------------------~~l--~~~~~~Nla~~  155 (591)
                      ++++|+..|.+++.+.|.+.....                                        .+.  ...++.++|.+
T Consensus       147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~  226 (368)
T 1fch_A          147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  226 (368)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence            999999999999988877653211                                        000  23467788888


Q ss_pred             eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725          156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~  235 (591)
                      |.+.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.+...+++...+..
T Consensus       227 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          227 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            88899999999999999998998888999999999999999999999999999999888888888888888887776666


Q ss_pred             CccchH
Q 007725          236 PRGLLI  241 (591)
Q Consensus       236 ~~~~~i  241 (591)
                      .++..+
T Consensus       307 ~~~~al  312 (368)
T 1fch_A          307 HFLEAL  312 (368)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.27  E-value=2.7e-13  Score=137.54  Aligned_cols=103  Identities=26%  Similarity=0.375  Sum_probs=98.6

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+..++.+|+.++..|+|++|+..|.+++.+.|.++.         +|+|+|.||+++|+|++|+.+|+++++++|+++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~   73 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVK   73 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH
Confidence            4678999999999999999999999999999998765         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      +|+++|.+|..+|++++|+.+|+++++++|++
T Consensus        74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999976

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.27  E-value=5.2e-13  Score=114.17  Aligned_cols=116  Identities=28%  Similarity=0.393  Sum_probs=108.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +..+..+|..++..|+|++|+..|.+++...|.++.         ++.+++.+|...|+|++|+..|+++++++|.+..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   79 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHH
Confidence            567889999999999999999999999999887654         78899999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           80 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999888876543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.26  E-value=1.9e-13  Score=138.57  Aligned_cols=194  Identities=10%  Similarity=0.066  Sum_probs=156.9

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      ++..+...+...+.++....++.+....|.......... .....+++..+...+...+...+.....+..+|..++..|
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            445566666666777777766666656666555444432 1123345677888888888888888999999999999999


Q ss_pred             cchhHHHHHHHhhhccc---cccccccceeeeeecccc------------ceeeeccccchhhhhhcceeeeccccchHH
Q 007725          118 RFSNALQKYLLAKKNLQ---GIHSSEGRTLLLACSLNS------------MSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p---~~~~~e~~~l~~~~~~Nl------------a~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +|++|+..|.+++.+.|   .++.         ++.++            +.+|...|+|++|+..|+++++++|.++.+
T Consensus        86 ~~~~A~~~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  156 (359)
T 3ieg_A           86 KLDEAEDDFKKVLKSNPSEQEEKE---------AESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAEL  156 (359)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ChHHHHHHHHHHHhcCCcccChHH---------HHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence            99999999999999988   6654         34444            799999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++.+|.++..+|++++|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus       157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988877665544444333

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.24  E-value=3e-13  Score=113.85  Aligned_cols=106  Identities=14%  Similarity=0.103  Sum_probs=98.4

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc-
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-  178 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-  178 (591)
                      +..+..+..+|..++..|+|++|+.+|.+++++.|.++.         +|+++|.+|+..|+|++|+..|+++++++|. 
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   73 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK---------YWLMKGKALYNLERYEEAVDCYNYVINVIEDE   73 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence            344567888999999999999999999999999888755         7899999999999999999999999999999 


Q ss_pred             -chHHHHHhccchhhh-hhHHHHhhhcccccccCCCCC
Q 007725          179 -NVKALYRRGQAYKDI-GRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       179 -~~~a~~~rg~al~~l-g~~eeAl~~lekAl~l~P~~~  214 (591)
                       +..+++++|.++..+ |++++|+.++++++..+|.+.
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence             999999999999999 999999999999999999764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.23  E-value=6.9e-13  Score=118.32  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=103.3

Q ss_pred             hcCCChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc
Q 007725           62 LTHTPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE  140 (591)
Q Consensus        62 l~~~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e  140 (591)
                      ++...|+..+....+ ......++++.|...+.+.+...+..+..+.++|.++++.|+|++|+..|.++|+++|.++.  
T Consensus         5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--   82 (126)
T 4gco_A            5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK--   82 (126)
T ss_dssp             --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--
T ss_pred             HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH--
Confidence            344567766665554 22223456778999999999999999999999999999999999999999999999999865  


Q ss_pred             cceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725          141 GRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       141 ~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                             +|+++|.||..+|+|++|+.+|+++|+++|++..++..++.|+
T Consensus        83 -------a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           83 -------GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             -------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             -------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                   8999999999999999999999999999999999999988775

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.23  E-value=5.6e-13  Score=126.26  Aligned_cols=181  Identities=12%  Similarity=0.015  Sum_probs=135.3

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-ccch
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-GRFS  120 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~-g~y~  120 (591)
                      +...+...+.++....++......|+......... .....++++.+...+...+...+.....+..+|..++.. |+|+
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~   94 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPA   94 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHH
Confidence            33334444555555554444444444333322221 111223456677777777777888888999999999999 9999


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl  200 (591)
                      +|+..|.+++. .|.++.      ...++.++|.||...|++++|+..|+++++++|.+..+++.+|.++...|++++|+
T Consensus        95 ~A~~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           95 ESMAYFDKALA-DPTYPT------PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             HHHHHHHHHHT-STTCSC------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHc-CcCCcc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            99999999999 333332      13378899999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccCC-CCChHHHHHhHHHHHhhhc
Q 007725          201 SDLSNAHEVSP-DDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       201 ~~lekAl~l~P-~~~~a~~~L~~a~~~l~~~  230 (591)
                      ..|++++.++| ++..++..+..+....+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (225)
T 2vq2_A          168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNA  198 (225)
T ss_dssp             HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence            99999999999 8888887777766665543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.23  E-value=5.1e-13  Score=131.36  Aligned_cols=137  Identities=10%  Similarity=0.016  Sum_probs=121.0

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.+...+.+.+...+..+..+..+|..++..|+|++|+..|.+++. .+.++.     ....+|.++|.||...|+|
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~-----~~~~~~~~lg~~~~~~~~~   90 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK-----AKSADFEYYGKILMKKGQD   90 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT-----CCHHHHHHHHHHHHHTTCH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh-----HHHHHHHHHHHHHHHcccH
Confidence            3566677777777777888888999999999999999999999999999 554443     1233589999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHh-HHHH
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR-DAKE  225 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~-~a~~  225 (591)
                      ++|+..|+++++++|.++.+|+.+|.+|..+|++++|+.+|+++++++|.+..++..++ .+..
T Consensus        91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998 4433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.23  E-value=3.6e-13  Score=136.83  Aligned_cols=150  Identities=11%  Similarity=0.010  Sum_probs=130.5

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      .++++.|...+++.+...++.+.++..+|..+...|++++|+..|.+++...|....         .+.+.+..+.+.++
T Consensus       130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~---------~~~~~~~~l~~~~~  200 (287)
T 3qou_A          130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY---------QGLVAQIELLXQAA  200 (287)
T ss_dssp             TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH---------HHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH---------HHHHHHHHHHhhcc
Confidence            345667888888889999999999999999999999999999999999999885432         46677777888999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      +.+|+..|++++.++|+++.+++++|.+|...|++++|+..|+++++++|++  ..++..|..+...+++...+...++.
T Consensus       201 ~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          201 DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998  88999999999988876555444443


Q ss_pred             h
Q 007725          240 L  240 (591)
Q Consensus       240 ~  240 (591)
                      .
T Consensus       281 a  281 (287)
T 3qou_A          281 Q  281 (287)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.23  E-value=4.5e-13  Score=125.27  Aligned_cols=147  Identities=16%  Similarity=0.067  Sum_probs=121.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee-eeccccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-YLKTKQY  162 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~-y~~lg~y  162 (591)
                      +++.+...+++.+...++.+..+..+|..+...|++++|+..|.+++...| ++.         ++..++.+ +...++.
T Consensus        21 ~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~---------~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS---------YKSLIAKLELHQQAAE   90 (176)
T ss_dssp             CHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH---------HHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH---------HHHHHHHHHHHhhccc
Confidence            456677888888888999999999999999999999999999999999988 653         22223322 2233455


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC--ChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD--GTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~--~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      .+|+..|+++++++|+++.+++++|.+|...|++++|+..|+++++++|++  ..++..++.+...+++..++...++..
T Consensus        91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999986  559999999999888766555444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.22  E-value=4.6e-13  Score=127.41  Aligned_cols=126  Identities=16%  Similarity=0.100  Sum_probs=111.1

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+..++.+|..++..|+|++|+.+|.+++..   ++         .+|+++|.||.+.|+|++|+..|+++++++|+++.
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~---~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~   72 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP---HS---------RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV   72 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---CH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC---Ch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence            3556889999999999999999999999732   22         37999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCC----------------hHHHHHhHHHHHhhhccCCCCCccc
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~----------------~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      +|+++|.+|..+|++++|+.+|++++++.|++.                .++..++.+...+++...+...++.
T Consensus        73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999999999999999999999999887                8899999998888776655444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.22  E-value=5.7e-13  Score=126.24  Aligned_cols=150  Identities=11%  Similarity=-0.055  Sum_probs=132.5

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-cc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQ  161 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-g~  161 (591)
                      ++++.+...++..+...+.....+..+|..+...|+|++|+.+|.+++.+.|.++.         ++.+++.+|... |+
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~   92 (225)
T 2vq2_A           22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE---------INNNYGWFLCGRLNR   92 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCC
T ss_pred             hhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhcCc
Confidence            34566777777777778888899999999999999999999999999999888755         789999999999 99


Q ss_pred             chhhhhhcceeee--ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          162 YDECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       162 y~eAi~~~~~AL~--ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                      +++|+..|+++++  .+|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.+....++...+...++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999  77888999999999999999999999999999999999999999999998888776665544444


Q ss_pred             hH
Q 007725          240 LI  241 (591)
Q Consensus       240 ~i  241 (591)
                      .+
T Consensus       173 ~~  174 (225)
T 2vq2_A          173 YQ  174 (225)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=5.4e-13  Score=113.18  Aligned_cols=97  Identities=21%  Similarity=0.272  Sum_probs=89.0

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--  179 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--  179 (591)
                      .+..++.+|..++..|+|++|+.+|.+++.+.|.++.         +|+|+|.||+++|+|++|+..|+++++++|++  
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   73 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV---------GYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH   73 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence            4668899999999999999999999999999988765         78999999999999999999999999999998  


Q ss_pred             ----hHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       180 ----~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                          ..+++++|.++..+|++++|+..+++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  105 (111)
T 2l6j_A           74 VAIRSKLQYRLELAQGAVGSVQIPVVEVDELP  105 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence                9999999999999999999998888754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.21  E-value=2.1e-12  Score=126.67  Aligned_cols=132  Identities=20%  Similarity=0.073  Sum_probs=115.8

Q ss_pred             HHHHHHHHhhhhcccc----cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           83 EEIATMRARIDAQMNY----EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~----~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      .+++.+...+...+..    .+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.         +|.++|.+|..
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~   89 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQ   89 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH---------HHHHHHHHHHH
Confidence            4555666666666554    4567899999999999999999999999999999888765         79999999999


Q ss_pred             cccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      .|+|++|+..|+++++++|.++.+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus        90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999987655544433

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.20  E-value=1.1e-12  Score=131.72  Aligned_cols=193  Identities=13%  Similarity=0.068  Sum_probs=150.3

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      ++..+...+...+.++....++++....|+......... .....++++.+...+.+.+...+.....+..+|..+...|
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~  103 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH  103 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence            455566666667777777766666555665555444331 1112345667888888888888888999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeecccc--------------ce-eeeccccchhhhhhcceeeeccccchHH
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNS--------------MS-CYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nl--------------a~-~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +|++|+..|.+++...|.+..         ++..+              +. +|...|++++|+..++++++++|.++.+
T Consensus       104 ~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  174 (327)
T 3cv0_A          104 NANAALASLRAWLLSQPQYEQ---------LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL  174 (327)
T ss_dssp             CHHHHHHHHHHHHHTSTTTTT---------C--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CHHHHHHHHHHHHHhCCccHH---------HHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHH
Confidence            999999999999999888765         34444              55 7889999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      ++.+|.+|...|++++|+..|++++.++|++..++..++.+....++...+...++..
T Consensus       175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988877666554444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.20  E-value=2.6e-12  Score=135.83  Aligned_cols=180  Identities=21%  Similarity=0.277  Sum_probs=137.3

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHh------------cccc
Q 007725           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQ------------GNEL  113 (591)
Q Consensus        47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~------------Gn~~  113 (591)
                      .+..+.++....++++....|.....+..... ....++++.+...+...+...+.....+..+            |..+
T Consensus       188 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  267 (450)
T 2y4t_A          188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL  267 (450)
T ss_dssp             HHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566555555554444443333332211 1122345566666776666666655555444            9999


Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh
Q 007725          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  193 (591)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l  193 (591)
                      +..|+|++|+.+|.+++.+.|.++.     ....+|.+++.+|.+.|++++|+..|+++++++|+++.+|+.+|.+|...
T Consensus       268 ~~~g~~~~A~~~~~~~l~~~p~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          268 IRDGRYTDATSKYESVMKTEPSIAE-----YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE  342 (450)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCCSSHH-----HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence            9999999999999999999887642     11236889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          194 GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       194 g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      |++++|+.+|+++++++|++..++..++.++..+++..
T Consensus       343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  380 (450)
T 2y4t_A          343 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ  380 (450)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999888776543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.19  E-value=6.2e-13  Score=121.58  Aligned_cols=166  Identities=13%  Similarity=0.063  Sum_probs=132.8

Q ss_pred             hhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh
Q 007725           43 ATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN  121 (591)
Q Consensus        43 A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e  121 (591)
                      +...+...+.++....++.+....|+.......... ....++++.+...++..+...+.....+..+|..++..|++++
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~   94 (186)
T 3as5_A           15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL   94 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Confidence            333344455555555555555555554443333211 1123456667777777777788888999999999999999999


Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      |+.+|.+++...|.++.         ++.++|.+|...|++++|+..++++++++|.++.+++.+|.++...|++++|+.
T Consensus        95 A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           95 AVPLLIKVAEANPINFN---------VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCcHhHH---------HHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999888754         789999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHH
Q 007725          202 DLSNAHEVSPDDGTIA  217 (591)
Q Consensus       202 ~lekAl~l~P~~~~a~  217 (591)
                      +|+++++++|++....
T Consensus       166 ~~~~~~~~~~~~~~~~  181 (186)
T 3as5_A          166 HFKKANELDEGASVEL  181 (186)
T ss_dssp             HHHHHHHHHHCCCGGG
T ss_pred             HHHHHHHcCCCchhhH
Confidence            9999999999876543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.18  E-value=3.3e-12  Score=121.41  Aligned_cols=120  Identities=15%  Similarity=0.113  Sum_probs=104.7

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+..   .+..+.++|.+++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|+
T Consensus        21 ~~~~A~~~~~~a~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A           21 DWKGALDAFSAVQDP---HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             CHHHHHHHHHTSSSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHcCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH---------HHHHHHHHHHHcccHH
Confidence            344555555555422   4678999999999999999999999999999888765         7999999999999999


Q ss_pred             hhhhhcceeeeccccch----------------HHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          164 ECIKVGSEVLAYDAKNV----------------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~----------------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                      +|+..|++++++.|.+.                .+++++|.+|..+|++++|+.+|+++++++|++..
T Consensus        89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            99999999999776655                99999999999999999999999999999998643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.18  E-value=6.8e-13  Score=129.19  Aligned_cols=143  Identities=10%  Similarity=-0.004  Sum_probs=128.3

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+.+.+...+..+..+..+|..++..|+|++|+..|.+++.+.|.++.         ++.+++.+|...|+|+
T Consensus        52 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~g~~~  122 (252)
T 2ho1_A           52 NTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR---------VLNNYGGFLYEQKRYE  122 (252)
T ss_dssp             CTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             ChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH---------HHHHHHHHHHHHhHHH
Confidence            4556677777777777888899999999999999999999999999999887754         7899999999999999


Q ss_pred             hhhhhcceeee--ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725          164 ECIKVGSEVLA--YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       164 eAi~~~~~AL~--ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~  235 (591)
                      +|+..|+++++  .+|.+..+++.+|.+|...|++++|+..|+++++++|.+..++..++.+....++...+..
T Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999  8899999999999999999999999999999999999999999999999888776555433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.18  E-value=4.8e-12  Score=129.14  Aligned_cols=131  Identities=11%  Similarity=-0.012  Sum_probs=108.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeecccccee----eecc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC----YLKT  159 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~----y~~l  159 (591)
                      +++.|...+++     +.....+..+|..+.+.|++++|+..|++++...|++.           +.+++.+    +...
T Consensus       116 ~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------~~~l~~a~~~l~~~~  179 (291)
T 3mkr_A          116 NPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------LTQLATAWVSLAAGG  179 (291)
T ss_dssp             CHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------HHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------HHHHHHHHHHHHhCc
Confidence            34445555544     56678899999999999999999999999999977653           2333333    3345


Q ss_pred             ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      |+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+.+|+++++++|++++++.+++.+...+++.
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999888777643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.18  E-value=2.9e-12  Score=130.75  Aligned_cols=129  Identities=11%  Similarity=0.085  Sum_probs=107.4

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhc--ccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQG--NELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~G--n~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      ++++.|...+++.+...++........+  +.+...|+|++|+.+|++++...|.++.         +|+++|.||.++|
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~---------~~~~la~~~~~~g  214 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL---------LLNGQAACHMAQG  214 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcC
Confidence            3455677777777766666543333222  4445679999999999999999888765         8999999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHH-HhhhcccccccCCCCChHHHHH
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEE-AVSDLSNAHEVSPDDGTIADVL  220 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~ee-Al~~lekAl~l~P~~~~a~~~L  220 (591)
                      +|++|+..|+++|+++|+++.+++++|.++..+|++++ +..+++++++++|+++.+....
T Consensus       215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          215 RWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            99999999999999999999999999999999999987 5688999999999999876643

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.16  E-value=3.4e-13  Score=123.67  Aligned_cols=111  Identities=7%  Similarity=-0.034  Sum_probs=102.0

Q ss_pred             HHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhh
Q 007725          122 ALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVS  201 (591)
Q Consensus       122 Ai~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~  201 (591)
                      +...|.+++.+.|.+..         +++++|.+|++.|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|+.
T Consensus         6 ~~~~~~~al~~~p~~~~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~   76 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLE---------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIH   76 (148)
T ss_dssp             CCCSHHHHTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHcCCHhhHH---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHH
Confidence            34568999999888765         789999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          202 DLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       202 ~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +|++++.++|+++.++..++.+...+++..++...++..+
T Consensus        77 ~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           77 SYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             HHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999998887776666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.15  E-value=3.4e-12  Score=141.45  Aligned_cols=156  Identities=7%  Similarity=-0.040  Sum_probs=125.2

Q ss_pred             hhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccc
Q 007725           57 CAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG  135 (591)
Q Consensus        57 ~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~  135 (591)
                      ..+++.....|+......... ......+++.+...+++.+...++.+..+..+|..++..|+|++|+.+|++++++.|.
T Consensus        10 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   89 (568)
T 2vsy_A           10 LQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE   89 (568)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            333444444444444433321 1112346778888899999999999999999999999999999999999999999998


Q ss_pred             ccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhh---hhHHHHhhhcccccccCCC
Q 007725          136 IHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI---GRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       136 ~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l---g~~eeAl~~lekAl~l~P~  212 (591)
                      ++.         +|+++|.||.+.|+|++|++.|+++++++|++..+++++|.+|..+   |++++|+..|+++++++|+
T Consensus        90 ~~~---------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A           90 HPG---------IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             CHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             CHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            865         7999999999999999999999999999999999999999999999   9999999999999999998


Q ss_pred             CChHHHHHh
Q 007725          213 DGTIADVLR  221 (591)
Q Consensus       213 ~~~a~~~L~  221 (591)
                      +...+..+.
T Consensus       161 ~~~~~~~l~  169 (568)
T 2vsy_A          161 AVEPFAFLS  169 (568)
T ss_dssp             CSCHHHHTT
T ss_pred             ccChHHHhC
Confidence            766554443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.13  E-value=1e-12  Score=139.00  Aligned_cols=203  Identities=9%  Similarity=0.068  Sum_probs=155.9

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      +...+...++..+.++....++.+....|........... ....++++.+...+.+.+...+..+..+..+|..+...|
T Consensus        29 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  108 (450)
T 2y4t_A           29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG  108 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            3444666667777888877777776666666555444321 122345677888888888888999999999999999999


Q ss_pred             cchhHHHHHHHhhhcccccc---ccccc---eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725          118 RFSNALQKYLLAKKNLQGIH---SSEGR---TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~---~~e~~---~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~  191 (591)
                      +|++|+..|.+++.+.|.++   .....   -.....++++|.+|...|+|++|+..|+++++++|.++.+++.+|.+|.
T Consensus       109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  188 (450)
T 2y4t_A          109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI  188 (450)
T ss_dssp             CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999999988765   30000   0000013455788999999999999999999999999999999999999


Q ss_pred             hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          192 DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       192 ~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ..|++++|+..|+++++++|++..++..++.+....++...+...++..+
T Consensus       189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999998888877665544444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.12  E-value=8.7e-13  Score=122.54  Aligned_cols=127  Identities=9%  Similarity=0.003  Sum_probs=108.8

Q ss_pred             HHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHH
Q 007725          106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYR  185 (591)
Q Consensus       106 lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~  185 (591)
                      +...++.++..|+|++|+..|.+++...|.++.         +|+++|.||...|+|++|+..|+++++++|+++.+++.
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   83 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSE---------QWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA   83 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHHHCCSCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHH
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            455677889999999999999999999998765         79999999999999999999999999999999999999


Q ss_pred             hccc-hhhhhhH--HHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          186 RGQA-YKDIGRL--EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       186 rg~a-l~~lg~~--eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +|.+ +...|++  ++|+.+|++++.++|++..++..++.+....++...+...+...+
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  142 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM  142 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999 8899999  999999999999999999999999999988877665544444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.12  E-value=7.9e-12  Score=122.53  Aligned_cols=140  Identities=14%  Similarity=0.036  Sum_probs=91.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+++.+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.         +|+++|.||.+.|+|+
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~la~~~~~~g~~~  128 (275)
T 1xnf_A           58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY---------AHLNRGIALYYGGRDK  128 (275)
T ss_dssp             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH---------HHHHHHHHHHHhccHH
Confidence            4445566666666666666666777777777777777777777777776666543         5666777777777777


Q ss_pred             hhhhhcceeeeccccc----------------------------------------------------------------
Q 007725          164 ECIKVGSEVLAYDAKN----------------------------------------------------------------  179 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~----------------------------------------------------------------  179 (591)
                      +|+..|+++++++|++                                                                
T Consensus       129 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  208 (275)
T 1xnf_A          129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT  208 (275)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence            7777766666666554                                                                


Q ss_pred             ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725          180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       180 ------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~  235 (591)
                            +.+|+.+|.+|..+|++++|+..|++++.++|++...+   ..+...+++.+++..
T Consensus       209 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~  267 (275)
T 1xnf_A          209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQD  267 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC--
T ss_pred             cccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHH
Confidence                  46677788888888888888888888888888765433   334444444444433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.11  E-value=1.7e-12  Score=111.91  Aligned_cols=119  Identities=25%  Similarity=0.306  Sum_probs=87.3

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      .+..+|..++..|++++|+..|.+++...|.++.         ++.+++.+|...|++++|+..+++++.++|.+..+++
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   73 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY   73 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh---------HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH
Confidence            4566677777777777777777777777665543         5667777777777777777777777777777777777


Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccC
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      .+|.++...|++++|+..|++++.+.|.+..++..++.+....++...
T Consensus        74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  121 (136)
T 2fo7_A           74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE  121 (136)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHH
Confidence            777777777777778777777777777777777777766665554433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.10  E-value=4.1e-12  Score=136.01  Aligned_cols=186  Identities=10%  Similarity=0.013  Sum_probs=131.1

Q ss_pred             hccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHH
Q 007725           47 MKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQK  125 (591)
Q Consensus        47 m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~  125 (591)
                      ....+.++....++......|........... ....++++.+...+...+...+.....+..+|..++..|+|++|+..
T Consensus       281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  360 (514)
T 2gw1_A          281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL  360 (514)
T ss_dssp             HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33445555555555554444444333222211 11122344566666666666777777888888888888888888888


Q ss_pred             HHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH------HHHHhccchhh---hhhH
Q 007725          126 YLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK------ALYRRGQAYKD---IGRL  196 (591)
Q Consensus       126 Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~------a~~~rg~al~~---lg~~  196 (591)
                      |.+++...|.++.         +|.++|.+|.+.|+|++|+..|+++++++|++..      +++.+|.++..   .|++
T Consensus       361 ~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  431 (514)
T 2gw1_A          361 FSEAKRKFPEAPE---------VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF  431 (514)
T ss_dssp             HHHHHHHSTTCSH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred             HHHHHHHcccCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence            8888888777654         6788888888888888888888888888888754      88888888888   8888


Q ss_pred             HHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          197 EEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       197 eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++|+..|++++.++|++..++..++.+....++...+...++..+
T Consensus       432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            888888888888888888888888888887776665554444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.10  E-value=6.5e-12  Score=135.68  Aligned_cols=148  Identities=7%  Similarity=-0.004  Sum_probs=134.4

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+. ...+..+|..++..|+|++|+.+|.+++...|.++.         +|.++|.+|...|+|+
T Consensus       258 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          258 NLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP---------TYYHRGQMYFILQDYK  327 (537)
T ss_dssp             CHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH---------HHHHHHHHHHhcCCHH
Confidence            345677777777777888 889999999999999999999999999999988765         7999999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +|+..|+++++++|++..+++.+|.+|...|++++|+..|+++++++|++..++..++.+....++...+...++..+
T Consensus       328 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          328 NAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998887777666666555

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=6.2e-12  Score=108.27  Aligned_cols=119  Identities=24%  Similarity=0.340  Sum_probs=105.9

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      ++.+...+...+...+.....+..+|..++..|++++|+..|.+++...|.++.         ++.+++.+|...|++++
T Consensus        17 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~   87 (136)
T 2fo7_A           17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------AWYNLGNAYYKQGDYDE   87 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH---------HHHHHHHHHHHhcCHHH
Confidence            444555555555556667788899999999999999999999999999887654         68899999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      |+..++++++++|.+..+++.+|.++...|++++|+..|++++.++|+
T Consensus        88 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           88 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999999999999886

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.09  E-value=2.5e-12  Score=125.14  Aligned_cols=149  Identities=9%  Similarity=-0.032  Sum_probs=118.9

Q ss_pred             HHHHHHHhhhhcccccch---HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee---
Q 007725           84 EIATMRARIDAQMNYEFN---AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL---  157 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~---~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~---  157 (591)
                      +++.|...+++.+...+.   ...+++.+|.++++.|+|++|+..|.++++..|.++.      ...+++++|.||.   
T Consensus        19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~------~~~a~~~~g~~~~~~~   92 (225)
T 2yhc_A           19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN------IDYVMYMRGLTNMALD   92 (225)
T ss_dssp             CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc------HHHHHHHHHHHHHhhh
Confidence            344555555555544333   4578999999999999999999999999999998764      1124566666655   


Q ss_pred             ---------------ccccchhhhhhcceeeeccccchHHH-----------------HHhccchhhhhhHHHHhhhccc
Q 007725          158 ---------------KTKQYDECIKVGSEVLAYDAKNVKAL-----------------YRRGQAYKDIGRLEEAVSDLSN  205 (591)
Q Consensus       158 ---------------~lg~y~eAi~~~~~AL~ldP~~~~a~-----------------~~rg~al~~lg~~eeAl~~lek  205 (591)
                                     ..|++++|+..|+++|+.+|++..++                 +.+|.+|...|++++|+..|++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  172 (225)
T 2yhc_A           93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG  172 (225)
T ss_dssp             C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence                           47899999999999999999987654                 6789999999999999999999


Q ss_pred             ccccCCCCC---hHHHHHhHHHHHhhhccCCCCCcc
Q 007725          206 AHEVSPDDG---TIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       206 Al~l~P~~~---~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      +++..|+++   +++..++.+...+++...+...++
T Consensus       173 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~  208 (225)
T 2yhc_A          173 MLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK  208 (225)
T ss_dssp             HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            999999976   678889999998887666544433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.08  E-value=5.1e-12  Score=122.98  Aligned_cols=110  Identities=13%  Similarity=0.141  Sum_probs=97.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH-
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-  181 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~-  181 (591)
                      +..++.+|..++..|+|++|+..|.+++...|..+.      ...+++++|.||++.|+|++|+..|+++++++|++.. 
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            457889999999999999999999999999887652      1237899999999999999999999999999999875 


Q ss_pred             --HHHHhccchhh------------------hhhHHHHhhhcccccccCCCCChHHH
Q 007725          182 --ALYRRGQAYKD------------------IGRLEEAVSDLSNAHEVSPDDGTIAD  218 (591)
Q Consensus       182 --a~~~rg~al~~------------------lg~~eeAl~~lekAl~l~P~~~~a~~  218 (591)
                        ++|.+|.++..                  .|++++|+..|+++++..|++..++.
T Consensus        78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence              89999999876                  68999999999999999999986653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.08  E-value=2.2e-12  Score=130.96  Aligned_cols=136  Identities=11%  Similarity=-0.083  Sum_probs=112.3

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-ccchhhhhhcceeeeccccc
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-KQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-g~y~eAi~~~~~AL~ldP~~  179 (591)
                      ..+..+.++|+++...|+|++|+.+|.+++.+.+....   ......+|.|+|.+|... |+|++|+.+|++||++.|.+
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~  151 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999999999775422   001134788999999995 99999999999999999865


Q ss_pred             ------hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh-------HHHHHhHHHHHhhhccCCCCCccc
Q 007725          180 ------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       180 ------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~-------a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                            ..+|+++|.+|..+|+|++|+.+|++++.+.|++..       ++..++.+...+++...+...++.
T Consensus       152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  224 (292)
T 1qqe_A          152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE  224 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred             CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                  678999999999999999999999999999998754       456777887777766555444443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.07  E-value=7.3e-12  Score=137.56  Aligned_cols=185  Identities=9%  Similarity=-0.076  Sum_probs=140.2

Q ss_pred             ccCCCchhhhhhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHH
Q 007725           48 KNMRPEDLKCAAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY  126 (591)
Q Consensus        48 ~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~-~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y  126 (591)
                      +..+.++....++++....|.....+...+.. ...++++.+...+++.+...+.....+..+|..+.+.|++++|++.|
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL  464 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34445555555554444444444333332111 12234556677777777777777888888999999999999999999


Q ss_pred             HHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec------cccc-hHHHHHhccchhhhhhHHHH
Q 007725          127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DAKN-VKALYRRGQAYKDIGRLEEA  199 (591)
Q Consensus       127 ~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l------dP~~-~~a~~~rg~al~~lg~~eeA  199 (591)
                      .+++++.|.++.         +|.+++.+|.+.|++++|++.|++++++      +|++ ..+|+.+|.+|...|++++|
T Consensus       465 ~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  535 (597)
T 2xpi_A          465 QSSYALFQYDPL---------LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA  535 (597)
T ss_dssp             HHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCCChH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence            999988887754         6889999999999999999999999988      5664 78999999999999999999


Q ss_pred             hhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          200 VSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       200 l~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +..|+++++++|++..++..++.+....++.+++...++..+
T Consensus       536 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          536 IDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            999999999999999999999999888887766655555444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.06  E-value=3.1e-12  Score=115.43  Aligned_cols=109  Identities=10%  Similarity=0.026  Sum_probs=97.7

Q ss_pred             HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725          124 QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (591)
Q Consensus       124 ~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l  203 (591)
                      ..|.+++.+.|.+..         .++++|.+|++.|+|++|+..|++++.++|+++.+|+.+|.+|..+|+|++|+.+|
T Consensus         5 ~~l~~al~~~p~~~~---------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   75 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLE---------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSY   75 (142)
T ss_dssp             ----CCTTCCHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHH---------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            568889999888765         78899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          204 SNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       204 ekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ++++.++|+++.++..++.+...+++...+...++..+
T Consensus        76 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           76 SYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR  113 (142)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999998887776666655

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.05  E-value=5.5e-12  Score=138.56  Aligned_cols=148  Identities=8%  Similarity=-0.070  Sum_probs=129.4

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      +..+...+...+...+..+..+..+|..+++.|++++|++.|.+++++.|.+..         +|++++.+|.+.|++++
T Consensus       355 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~  425 (597)
T 2xpi_A          355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP---------AWIGFAHSFAIEGEHDQ  425 (597)
T ss_dssp             HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCHHH
Confidence            445555566656667778889999999999999999999999999999888754         78999999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      |++.|+++++++|++..+|+.+|.+|...|++++|+..|+++++++|++..++..++.+....++.+++...++..+
T Consensus       426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  502 (597)
T 2xpi_A          426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL  502 (597)
T ss_dssp             HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888877766655555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.04  E-value=1.9e-11  Score=124.00  Aligned_cols=161  Identities=7%  Similarity=-0.102  Sum_probs=139.7

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      ++..|...+...+.++....++++....|+......... .....++++.|...+++.+...++....+...+..+...+
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~  199 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA  199 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence            666677788888999999988888888888776655542 2223456677888888888888888888888888899999


Q ss_pred             cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc--hHHHHHhccchhhhhh
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN--VKALYRRGQAYKDIGR  195 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~--~~a~~~rg~al~~lg~  195 (591)
                      ++.+|+..|++++...|+++.         +++++|.+|...|++++|+..|.++++++|++  ..++.+++.+|..+|+
T Consensus       200 ~~~~a~~~l~~al~~~P~~~~---------~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          200 ADTPEIQQLQQQVAENPEDAA---------LATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             TSCHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             ccCccHHHHHHHHhcCCccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence            999999999999999999876         89999999999999999999999999999998  9999999999999999


Q ss_pred             HHHHhhhcccccc
Q 007725          196 LEEAVSDLSNAHE  208 (591)
Q Consensus       196 ~eeAl~~lekAl~  208 (591)
                      +++|+..|++++.
T Consensus       271 ~~~a~~~~r~al~  283 (287)
T 3qou_A          271 GDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHH
Confidence            9999999998864

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.04  E-value=1.4e-11  Score=106.57  Aligned_cols=100  Identities=12%  Similarity=0.079  Sum_probs=88.1

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHH
Q 007725          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEA  199 (591)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeA  199 (591)
                      .+|+..|.+++...|.++.         +|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|
T Consensus         2 ~~a~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML---------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            5789999999999998865         7999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccCCCCC--hHHHHHhHHHHHhh
Q 007725          200 VSDLSNAHEVSPDDG--TIADVLRDAKEILM  228 (591)
Q Consensus       200 l~~lekAl~l~P~~~--~a~~~L~~a~~~l~  228 (591)
                      +.+|++++.++|.+.  .+...+..+...++
T Consensus        73 ~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~  103 (115)
T 2kat_A           73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence            999999999998643  44555555555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.04  E-value=5.7e-12  Score=136.12  Aligned_cols=149  Identities=13%  Similarity=0.077  Sum_probs=99.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+.+.+...+.....+..+|..++..|+|++|+..|.+++...|.++.         +|.++|.+|...|+|+
T Consensus       325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~  395 (537)
T 3fp2_A          325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE---------VPTFFAEILTDRGDFD  395 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH---------HHHHHHHHHHHhCCHH
Confidence            3445555566666666666666667777777777777777777777776666544         5667777777777777


Q ss_pred             hhhhhcceeeeccccchHH------HHHhccchhhh----------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          164 ECIKVGSEVLAYDAKNVKA------LYRRGQAYKDI----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a------~~~rg~al~~l----------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +|+..|+++++++|++...      ++.+|.+|...          |++++|+.+|+++++++|++..++..++.+....
T Consensus       396 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  475 (537)
T 3fp2_A          396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM  475 (537)
T ss_dssp             HHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            7777777777776655433      44455666666          7777777777777777777777777777777777


Q ss_pred             hhccCCCCCccchH
Q 007725          228 MKEDGHHGPRGLLI  241 (591)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (591)
                      ++.+++...++..+
T Consensus       476 g~~~~A~~~~~~al  489 (537)
T 3fp2_A          476 EKIDEAIELFEDSA  489 (537)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            66655544444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.03  E-value=2.7e-11  Score=122.84  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhcccccch------HHHHHHHhccccccc-ccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725           84 EIATMRARIDAQMNYEFN------AAKMLKKQGNELYSE-GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  156 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~------~a~~lk~~Gn~~~~~-g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y  156 (591)
                      +++.+...+++++...+.      .+..+.++|..+... |+|++|+.+|.+++.+.|.+..   ......+|.++|.+|
T Consensus        92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~  168 (292)
T 1qqe_A           92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS---VALSNKCFIKCADLK  168 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHH
Confidence            445566666666554332      367899999999996 9999999999999999886521   001134789999999


Q ss_pred             eccccchhhhhhcceeeeccccchH-------HHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725          157 LKTKQYDECIKVGSEVLAYDAKNVK-------ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       157 ~~lg~y~eAi~~~~~AL~ldP~~~~-------a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a  216 (591)
                      .++|+|++|+..|+++++++|++..       +|+++|.+|..+|++++|+.+|++++.++|++...
T Consensus       169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9999999999999999999987643       68999999999999999999999999999987654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.03  E-value=7.2e-12  Score=122.38  Aligned_cols=138  Identities=16%  Similarity=0.074  Sum_probs=120.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhcc-----ccccccccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-----QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~-----p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL  173 (591)
                      .+..+..+..+|..++..|+|++|+.+|.+++.+.     ++.+.      ...++.++|.||...|+|++|+..|.+++
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA------VAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH------HHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            36678899999999999999999999999999885     22222      34589999999999999999999999999


Q ss_pred             ec--------cccchHHHHHhccchhhhhhHHHHhhhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCc
Q 007725          174 AY--------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPR  237 (591)
Q Consensus       174 ~l--------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~a~~~~  237 (591)
                      .+        +|....+++++|.+|..+|++++|+.+|++++.+        +|....++..++.+....++...+...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            98        5889999999999999999999999999999999        6767788999999999988887776666


Q ss_pred             cchHH
Q 007725          238 GLLIE  242 (591)
Q Consensus       238 ~~~i~  242 (591)
                      +..+.
T Consensus       193 ~~~l~  197 (283)
T 3edt_B          193 KEILT  197 (283)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.03  E-value=5.9e-12  Score=134.73  Aligned_cols=148  Identities=9%  Similarity=-0.019  Sum_probs=113.4

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+.....+..+|..++..|+|++|+..|.+++.+.|.++.         ++.+++.+|...|+++
T Consensus       285 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~  355 (514)
T 2gw1_A          285 DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF---------PYIQLACLAYRENKFD  355 (514)
T ss_dssp             CCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH---------HHHHHHHHTTTTTCHH
T ss_pred             CHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH---------HHHHHHHHHHHcCCHH
Confidence            3445556666666667777778888888888888888888888888888777654         6788888888888888


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH---hhhccCCC
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI---LMKEDGHH  234 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~---l~~~~~a~  234 (591)
                      +|+..|+++++++|+++.+++.+|.+|...|++++|+..|++++.++|++..      ++..++.+...   .++...+.
T Consensus       356 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~  435 (514)
T 2gw1_A          356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT  435 (514)
T ss_dssp             HHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence            8888888888888888888888888888888888888888888888887755      77777777777   66655544


Q ss_pred             CCccch
Q 007725          235 GPRGLL  240 (591)
Q Consensus       235 ~~~~~~  240 (591)
                      ..++..
T Consensus       436 ~~~~~a  441 (514)
T 2gw1_A          436 NLLEKA  441 (514)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.02  E-value=1.4e-11  Score=128.29  Aligned_cols=117  Identities=10%  Similarity=-0.078  Sum_probs=105.1

Q ss_pred             hHHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeee
Q 007725           82 PEEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL  146 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~---------------a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~  146 (591)
                      ..+++.|...|.+.+...+..               +..+.++|.++++.|+|++|+.+|.++|.++|.++.        
T Consensus       160 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~--------  231 (336)
T 1p5q_A          160 EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK--------  231 (336)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------
T ss_pred             CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--------
Confidence            446777888888888877776               699999999999999999999999999999998765        


Q ss_pred             eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh-hhccccc
Q 007725          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV-SDLSNAH  207 (591)
Q Consensus       147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl-~~lekAl  207 (591)
                       +|+++|.||+.+|+|++|+.+|+++|+++|++..++++++.++..+|++++|. ..|++.+
T Consensus       232 -a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          232 -GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999999999999999999999999984 4555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.00  E-value=6.5e-12  Score=117.31  Aligned_cols=129  Identities=16%  Similarity=0.118  Sum_probs=109.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+..+|..++..|+|++|+..|++++..+|+++.         +++++|.+|...|++++|+..|+++++++| ++..
T Consensus         6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~---------a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~   75 (176)
T 2r5s_A            6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD---------VKLAKADCLLETKQFELAQELLATIPLEYQ-DNSY   75 (176)
T ss_dssp             CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH---------HHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHH
Confidence            345778899999999999999999999999999876         799999999999999999999999999999 8877


Q ss_pred             HHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          183 LYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       183 ~~~rg~al~-~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +..++.+.. ..++..+|+..|+++++++|++..++..++.+....++.+++...++..+
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  135 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL  135 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            666664432 33445568999999999999999999999999999887776655555444

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.98  E-value=1e-11  Score=121.25  Aligned_cols=120  Identities=11%  Similarity=-0.008  Sum_probs=101.5

Q ss_pred             HHHHHHHhhhhcccc--------cchHHHHHHHhcccccccccchhHHHHHHHhhhcc-----ccccccccceeeeeecc
Q 007725           84 EIATMRARIDAQMNY--------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-----QGIHSSEGRTLLLACSL  150 (591)
Q Consensus        84 e~~~a~~~~~~~l~~--------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~-----p~~~~~e~~~l~~~~~~  150 (591)
                      ++..+...+...+..        .+..+..+..+|..++..|+|++|+.+|.+++.+.     +.++.      ...+|.
T Consensus        58 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~------~~~~~~  131 (283)
T 3edt_B           58 KYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD------VAKQLN  131 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH------HHHHHH
Confidence            344455545544433        46778899999999999999999999999999984     22221      345899


Q ss_pred             ccceeeeccccchhhhhhcceeeec--------cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAY--------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~l--------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      ++|.+|...|+|++|+..|++++++        +|....+++++|.+|..+|++++|+..|++++++
T Consensus       132 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          132 NLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999        8899999999999999999999999999999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.97  E-value=1.3e-11  Score=115.37  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=89.5

Q ss_pred             eccccceeeeccccchhhhhhcceeeecccc-------chH-----HHHHhccchhhhhhHHHHhhhccccccc------
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-------NVK-----ALYRRGQAYKDIGRLEEAVSDLSNAHEV------  209 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-------~~~-----a~~~rg~al~~lg~~eeAl~~lekAl~l------  209 (591)
                      .+.++|.++++.|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|++||++      
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            4678999999999999999999999999999       444     9999999999999999999999999999      


Q ss_pred             -CCCCChHH----HHHhHHHHHhhhccCCCCCccchHHH
Q 007725          210 -SPDDGTIA----DVLRDAKEILMKEDGHHGPRGLLIEE  243 (591)
Q Consensus       210 -~P~~~~a~----~~L~~a~~~l~~~~~a~~~~~~~i~e  243 (591)
                       +|++..+|    .+++.+...++++.++...+++.++-
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence             99999999    99999999999999998888888743

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.97  E-value=4.5e-11  Score=127.44  Aligned_cols=133  Identities=16%  Similarity=0.014  Sum_probs=109.9

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc----
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----  177 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP----  177 (591)
                      .+..+..+|.+++..|+|++|+++|.+|+++.+.....+.......+|.|+|.+|..+|+|++|+.+|++++++.+    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3567888999999999999999999999998654322222222345789999999999999999999999998754    


Q ss_pred             ----cchHHHHHhccchhhh--hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCC
Q 007725          178 ----KNVKALYRRGQAYKDI--GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHH  234 (591)
Q Consensus       178 ----~~~~a~~~rg~al~~l--g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~  234 (591)
                          ..+..++++|.++..+  ++|++|+.+|++|++++|++++++..++.+...++......
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~  192 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ  192 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHH
Confidence                4678899999888765  57999999999999999999999999999888776655433

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.96  E-value=2.2e-11  Score=121.17  Aligned_cols=184  Identities=14%  Similarity=0.046  Sum_probs=137.1

Q ss_pred             hhhhhcCCChhHHHHHHHHhhc-CChHHHHHHHHhhhhccc--------ccchHHHHHHHhcccccccccchhHHHHHHH
Q 007725           58 AAEQLTHTPPEEVAEIGEKLAN-ASPEEIATMRARIDAQMN--------YEFNAAKMLKKQGNELYSEGRFSNALQKYLL  128 (591)
Q Consensus        58 a~e~l~~~~pee~~a~~~k~~~-~~~~e~~~a~~~~~~~l~--------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~k  128 (591)
                      ..+......|+....+...... ...++++.+...+++.+.        ..+..+..+..+|..++..|+|++|+.+|.+
T Consensus        15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (311)
T 3nf1_A           15 YFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLND   94 (311)
T ss_dssp             SCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3333344445544444433111 122345556655555555        3677788999999999999999999999999


Q ss_pred             hhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc--------ccchHHHHHhccchhhhhhHHHHh
Q 007725          129 AKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD--------AKNVKALYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       129 AL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld--------P~~~~a~~~rg~al~~lg~~eeAl  200 (591)
                      ++.+...... ........++.++|.+|...|+|++|+..|++++++.        |....+++++|.+|...|++++|+
T Consensus        95 al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A           95 ALAIREKTLG-KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9998521100 0001134578999999999999999999999999885        788999999999999999999999


Q ss_pred             hhccccccc--------CCCCChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          201 SDLSNAHEV--------SPDDGTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       201 ~~lekAl~l--------~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                      .+|++++.+        +|....++..++.+....++..++...+...+.
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999998        666677888999999888887777666666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.96  E-value=3.4e-11  Score=131.70  Aligned_cols=123  Identities=7%  Similarity=0.017  Sum_probs=109.0

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      .+++.|...+.+++...+..+..+.++|..+++.|+|++|+..|++++++.|.++.         +|+++|.+|..+|+|
T Consensus        20 g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~---------~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           20 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKF   90 (477)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH---------HHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence            45677888888888888999999999999999999999999999999999988765         799999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccc--hhhhhhHHHHhhhcc-----------cccccCCCCC
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLS-----------NAHEVSPDDG  214 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~a--l~~lg~~eeAl~~le-----------kAl~l~P~~~  214 (591)
                      ++|++.|+++++++|++..++++++.+  +...|++++|++.++           +++.++|++.
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~  155 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYS  155 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccc
Confidence            999999999999999999999999999  889999999999999           9999998753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.95  E-value=4.6e-11  Score=108.00  Aligned_cols=116  Identities=7%  Similarity=0.009  Sum_probs=101.9

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+.+.+...+..+..+..+|.+++..|+|++|+..|.+++.+.|.++.         +|+++|.||..+|+|+
T Consensus        28 ~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~~a~~~~~~~~~~   98 (166)
T 1a17_A           28 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKFR   98 (166)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHhccHH
Confidence            4556777777777778888899999999999999999999999999999888765         7999999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccc--hhhhhhHHHHhhhcccccc
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQA--YKDIGRLEEAVSDLSNAHE  208 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~a--l~~lg~~eeAl~~lekAl~  208 (591)
                      +|+..|+++++++|.+..++..++.+  +...|++++|+..++++..
T Consensus        99 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           99 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999999988555554  8889999999999887643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.95  E-value=2.2e-11  Score=108.38  Aligned_cols=93  Identities=12%  Similarity=0.023  Sum_probs=77.8

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh-------HHHHH
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT-------IADVL  220 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~-------a~~~L  220 (591)
                      ++.|+|.+|++.|+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..       ++..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999999998765       44555


Q ss_pred             hHHHHHhhhccCCCCCccch
Q 007725          221 RDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       221 ~~a~~~l~~~~~a~~~~~~~  240 (591)
                      +.+...+++...+...++..
T Consensus        90 g~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            55555555554444444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.95  E-value=9.9e-11  Score=99.01  Aligned_cols=91  Identities=10%  Similarity=0.061  Sum_probs=83.8

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLR  221 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~  221 (591)
                      .|+++|.+|+..|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++      ..++..++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999998      77888999


Q ss_pred             HHHHHhhhccCCCCCcc
Q 007725          222 DAKEILMKEDGHHGPRG  238 (591)
Q Consensus       222 ~a~~~l~~~~~a~~~~~  238 (591)
                      .+...++....+...++
T Consensus        86 ~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           86 LAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHhHhhhHhHHH
Confidence            99998887776655544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.94  E-value=8.9e-11  Score=122.34  Aligned_cols=125  Identities=7%  Similarity=0.004  Sum_probs=72.2

Q ss_pred             hHHHHHHHHhhhhcccccchHH-----------------HHHHHhcccccccccchhHHHHHHHhhhcccccccccccee
Q 007725           82 PEEIATMRARIDAQMNYEFNAA-----------------KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTL  144 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a-----------------~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l  144 (591)
                      ..++..|...|.+.+...+...                 ..+.++|.++++.|+|++|+.+|.++|.++|.++.      
T Consensus       192 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------  265 (338)
T 2if4_A          192 EEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK------  265 (338)
T ss_dssp             SSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH------
T ss_pred             cCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Confidence            3445566666766666655544                 48899999999999999999999999999998765      


Q ss_pred             eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccch-hhhhhHHHHhhhcccccccCCCCCh
Q 007725          145 LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY-KDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       145 ~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al-~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                         +|+++|.||+.+|+|++|+.+|+++++++|++..+++.++.+. ...++++++...|++++.+.|+++.
T Consensus       266 ---a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          266 ---ALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ---HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred             ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence               8999999999999999999999999999999999999999985 4567788899999999999998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.94  E-value=8.8e-11  Score=107.96  Aligned_cols=103  Identities=9%  Similarity=0.013  Sum_probs=93.8

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ  161 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~  161 (591)
                      ..+++.+...+.+.+...+..+..+.++|.+++..|+|++|+.+|.+++.++|.++.         +|+++|.||+.+|+
T Consensus        24 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~   94 (164)
T 3sz7_A           24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK---------AWSRLGLARFDMAD   94 (164)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHccC
Confidence            345677888888888889999999999999999999999999999999999998865         89999999999999


Q ss_pred             chhhhhhcceeeeccccchHHHHHhccchhhh
Q 007725          162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI  193 (591)
Q Consensus       162 y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l  193 (591)
                      |++|+.+|+++++++|++..+|++++.+....
T Consensus        95 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  126 (164)
T 3sz7_A           95 YKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR  126 (164)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            99999999999999999999998888776544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.93  E-value=2.9e-11  Score=120.22  Aligned_cols=120  Identities=12%  Similarity=0.039  Sum_probs=101.5

Q ss_pred             HHHHHHHhhhhcccc--------cchHHHHHHHhcccccccccchhHHHHHHHhhhcc-----ccccccccceeeeeecc
Q 007725           84 EIATMRARIDAQMNY--------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-----QGIHSSEGRTLLLACSL  150 (591)
Q Consensus        84 e~~~a~~~~~~~l~~--------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~-----p~~~~~e~~~l~~~~~~  150 (591)
                      +++.+...+...+..        .+..+..+..+|..++..|+|++|+.+|.+++.+.     +..+.      ...++.
T Consensus        84 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------~~~~~~  157 (311)
T 3nf1_A           84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------VAKQLN  157 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------HHHHHH
Confidence            344555555555443        46678899999999999999999999999999985     22222      344789


Q ss_pred             ccceeeeccccchhhhhhcceeeec--------cccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAY--------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~l--------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      ++|.+|...|+|++|+..|++++++        +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998        8889999999999999999999999999999974

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.91  E-value=5.5e-11  Score=121.23  Aligned_cols=134  Identities=5%  Similarity=-0.174  Sum_probs=66.5

Q ss_pred             HHHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725           87 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        87 ~a~~~~~~~l~-~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      .+...+++++. ..++....+..+|..+...|++++|+..|+++|.+.|.++.        .+|.+++.++.+.|++++|
T Consensus        82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------HHHHHHHHHHHHhcCHHHH
Confidence            34444444444 34444555555555555555555555555555555444321        0345555555555555555


Q ss_pred             hhhcceeeeccccchHHHHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          166 IKVGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       166 i~~~~~AL~ldP~~~~a~~~rg~al~-~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +..|+++++++|.+..+|...+.... ..|++++|+..|+++++++|++..++..+..+...++
T Consensus       154 ~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g  217 (308)
T 2ond_A          154 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN  217 (308)
T ss_dssp             HHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            55555555555555544443333322 1455555555555555555555555555544444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.91  E-value=1.6e-10  Score=129.24  Aligned_cols=170  Identities=9%  Similarity=-0.035  Sum_probs=143.4

Q ss_pred             CchhhhhhhhhcCCChhHHHHHHHHhhcCC-hH----------HHHHHHHhhhhcccccchHHHHHHHhcccccccc--c
Q 007725           52 PEDLKCAAEQLTHTPPEEVAEIGEKLANAS-PE----------EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG--R  118 (591)
Q Consensus        52 pe~~~~a~e~l~~~~pee~~a~~~k~~~~~-~~----------e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g--~  118 (591)
                      .+++....+++....|+...++..|..... ..          .++.+..-++..+..+++...+|..++.++.+.+  +
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence            345555666677777777777666521111 11          2667778888888999999999999999999999  6


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccccchHHHHHhccchhhh----
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDI----  193 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l----  193 (591)
                      |++++++|.++|+++|.+..         +|.+|+.++.+++ .+++++++++++|+++|.|..+|++|+.++..+    
T Consensus       125 ~~~el~~~~k~l~~d~~N~~---------aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          125 WARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHhhcccccc---------HHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence            69999999999999998865         8999999999999 899999999999999999999999999998875    


Q ss_pred             ----------hhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          194 ----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       194 ----------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                                +.+++|++++.+|+.++|++..+|..++-+....+++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence                      7899999999999999999999999999887776553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.89  E-value=1.1e-10  Score=118.96  Aligned_cols=130  Identities=8%  Similarity=-0.015  Sum_probs=113.9

Q ss_pred             HHHHHhhhhcccccchHHHHHHHhcccccc-------cccc-------hhHHHHHHHhhh-ccccccccccceeeeeecc
Q 007725           86 ATMRARIDAQMNYEFNAAKMLKKQGNELYS-------EGRF-------SNALQKYLLAKK-NLQGIHSSEGRTLLLACSL  150 (591)
Q Consensus        86 ~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~-------~g~y-------~eAi~~Y~kAL~-l~p~~~~~e~~~l~~~~~~  150 (591)
                      ..+...+++.+...+..+..|..+|..+..       .|++       ++|+..|++|+. +.|.+..         +|.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~---------~~~  103 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML---------LYF  103 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH---------HHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH---------HHH
Confidence            456677777888888999999999988763       5776       899999999999 6887754         799


Q ss_pred             ccceeeeccccchhhhhhcceeeeccccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHH
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~-a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                      +++.++.+.|++++|+..|+++|+++|.++. +|+++|.++.+.|++++|+..|++|++++|.+..++.....++
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  178 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999987 9999999999999999999999999999998877766554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.89  E-value=8.5e-11  Score=127.64  Aligned_cols=112  Identities=8%  Similarity=-0.064  Sum_probs=98.2

Q ss_pred             hHHHHHHHHhhhhcccccchH---------------HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeee
Q 007725           82 PEEIATMRARIDAQMNYEFNA---------------AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLL  146 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~---------------a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~  146 (591)
                      ..++..|...|.+++...+..               +..+.++|.++++.|+|++|+.+|.++|.++|.++.        
T Consensus       281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~--------  352 (457)
T 1kt0_A          281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK--------  352 (457)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH--------
T ss_pred             CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH--------
Confidence            345677888888888877766               789999999999999999999999999999998765        


Q ss_pred             eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhh
Q 007725          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSD  202 (591)
Q Consensus       147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~  202 (591)
                       +|+++|.||+.+++|++|+.+|+++|+++|++..+++.++.++..++++++|...
T Consensus       353 -a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          353 -GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             -HHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             8999999999999999999999999999999999999999999999999988754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.86  E-value=1e-10  Score=118.32  Aligned_cols=135  Identities=14%  Similarity=0.036  Sum_probs=109.5

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.|...+...+...+..+..+.++|..+++.|+|++|+..|.+++++.|.++.         +|+++|.+|..+|+|
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~   88 (281)
T 2c2l_A           18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK---------AHFFLGQCQLEMESY   88 (281)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHcCCH
Confidence            34666777888888888888999999999999999999999999999999998765         799999999999999


Q ss_pred             hhhhhhcceeeeccccchHH-------HHHhc----------------------cchhhhhhHHHHhhhcccccccCCCC
Q 007725          163 DECIKVGSEVLAYDAKNVKA-------LYRRG----------------------QAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a-------~~~rg----------------------~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      ++|+..|+++++++|++...       ..+++                      ...+..|++++|++.|+++++++|++
T Consensus        89 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~  168 (281)
T 2c2l_A           89 DEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDD  168 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCH
T ss_pred             HHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccch
Confidence            99999999999999976211       11111                      01124689999999999999999988


Q ss_pred             ChHHHHHhHHHHH
Q 007725          214 GTIADVLRDAKEI  226 (591)
Q Consensus       214 ~~a~~~L~~a~~~  226 (591)
                      ..+...+..+...
T Consensus       169 ~~~~~~l~~~~~~  181 (281)
T 2c2l_A          169 GHIRAQQACIEAK  181 (281)
T ss_dssp             HHHTHHHHHHHHH
T ss_pred             hhhhhHHHHHHHH
Confidence            7666666554433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.86  E-value=7.7e-11  Score=123.16  Aligned_cols=157  Identities=15%  Similarity=0.104  Sum_probs=128.3

Q ss_pred             HHHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           84 EIATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        84 e~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      ++..|...+++++..      ....+..+..+|..++..|+|++|+.+|.+|+.+.+....  .......++.++|.||.
T Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          118 EYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA--YNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST--THHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHHHH
Confidence            455566666666553      4457899999999999999999999999999998776532  11223458999999999


Q ss_pred             ccccchhhhhhcceeeeccccc------hHHHHHhccchhhhhhHHHHhhhcccccc-----cC-CCCChHHHHHhHHHH
Q 007725          158 KTKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VS-PDDGTIADVLRDAKE  225 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~------~~a~~~rg~al~~lg~~eeAl~~lekAl~-----l~-P~~~~a~~~L~~a~~  225 (591)
                      .+|+|++|+..|++++++.+..      +.+++++|.+|..+|++++|+.+|++++.     .+ |....++..++.+..
T Consensus       196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            9999999999999999986544      36999999999999999999999999999     46 777788999999999


Q ss_pred             HhhhccCCCCCccchHH
Q 007725          226 ILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       226 ~l~~~~~a~~~~~~~i~  242 (591)
                      .+++...+...++..+.
T Consensus       276 ~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          276 KLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            98887777666665553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=8.4e-10  Score=123.42  Aligned_cols=135  Identities=7%  Similarity=-0.092  Sum_probs=125.7

Q ss_pred             HHHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  156 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y  156 (591)
                      .+...+...+..+++...+|..++.++...++          |++++..|.++|..+|.+..         +|++|+.++
T Consensus        47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------aW~hR~w~l  117 (567)
T 1dce_A           47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLL  117 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHH
Confidence            46677888888999999999999999999888          99999999999999999866         899999999


Q ss_pred             eccc--cchhhhhhcceeeeccccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          157 LKTK--QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       157 ~~lg--~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      .+++  +|++++++|+++|++||.|..+|+.|+.++..++ .+++++++++++++++|.|..+|..++.+...+...
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence            9999  6699999999999999999999999999999999 899999999999999999999999999998887544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.84  E-value=8.9e-11  Score=103.64  Aligned_cols=94  Identities=13%  Similarity=0.059  Sum_probs=86.2

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      .++++|.++++.|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCccchH
Q 007725          228 MKEDGHHGPRGLLI  241 (591)
Q Consensus       228 ~~~~~a~~~~~~~i  241 (591)
                      ++..++...++..+
T Consensus        99 g~~~~A~~~~~~al  112 (121)
T 1hxi_A           99 HNANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            88776655555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.84  E-value=2.3e-10  Score=99.14  Aligned_cols=103  Identities=11%  Similarity=0.009  Sum_probs=93.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+++.+...+.....+..+|..++..|+|++|+.+|.+++.+.|.++.         +++++|.||.+.|+|+
T Consensus        31 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~la~~~~~~~~~~  101 (133)
T 2lni_A           31 DYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK---------GYTRKAAALEAMKDYT  101 (133)
T ss_dssp             CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHHhhHH
Confidence            4556777777777778888899999999999999999999999999999888765         7999999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR  195 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~  195 (591)
                      +|+..|+++++++|.+..+++.++.++..+|+
T Consensus       102 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          102 KAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999987764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.84  E-value=3.5e-11  Score=122.93  Aligned_cols=130  Identities=10%  Similarity=-0.020  Sum_probs=102.8

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-  179 (591)
                      ..+..+.++|.++...|+|++|+.+|.+++.+.+....   ......+|.|+|.+|.. |+|++|+.+|++||++.+.. 
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~  149 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE  149 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC
Confidence            45778999999999999999999999999998654321   01123478899999999 99999999999999998754 


Q ss_pred             -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhccCCC
Q 007725          180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKEDGHH  234 (591)
Q Consensus       180 -----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~l~~~~~a~  234 (591)
                           ..+++++|.+|..+|+|++|+.+|++++.+.|++..      ++..++.+...+++...+.
T Consensus       150 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          150 RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence                 678999999999999999999999999998776542      4444555555555544433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.83  E-value=2.3e-10  Score=100.06  Aligned_cols=101  Identities=9%  Similarity=0.029  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.+...+.+.+...+..+..+.++|.+++..|+|++|+..|.+++.++|.++.         +|+++|.||..+|+|
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~   88 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR---------AYIRKATAQIAVKEY   88 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHHhCH
Confidence            45667888888888888999999999999999999999999999999999998865         799999999999999


Q ss_pred             hhhhhhcceeeecc------ccchHHHHHhccchhh
Q 007725          163 DECIKVGSEVLAYD------AKNVKALYRRGQAYKD  192 (591)
Q Consensus       163 ~eAi~~~~~AL~ld------P~~~~a~~~rg~al~~  192 (591)
                      ++|+..|+++++++      |.+..++..++.+...
T Consensus        89 ~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           89 ASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            99999999999999      8888888777766543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.83  E-value=1.5e-10  Score=96.80  Aligned_cols=92  Identities=12%  Similarity=0.036  Sum_probs=66.6

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHh
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRR  186 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~r  186 (591)
                      +.+|..++..|+|++|+..|.+++...|.++.        .+|+++|.||..+|+|++|+..|+++++++|++..++++ 
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKD--------EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-
Confidence            45566777777777777777777777666531        156777777777777777777777777777777777654 


Q ss_pred             ccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          187 GQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       187 g~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                             +.+.+++..|++++.++|++.
T Consensus        75 -------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 -------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             -------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             -------HHHHHHHHHHHHHhccCcccc
Confidence                   667777777777777777654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.83  E-value=4.6e-10  Score=116.04  Aligned_cols=170  Identities=9%  Similarity=-0.091  Sum_probs=146.5

Q ss_pred             CCchhhhhhhhhcCCChhHHHHHHHH---hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccc----ccc---ccch
Q 007725           51 RPEDLKCAAEQLTHTPPEEVAEIGEK---LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNEL----YSE---GRFS  120 (591)
Q Consensus        51 ~pe~~~~a~e~l~~~~pee~~a~~~k---~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~----~~~---g~y~  120 (591)
                      ..++.....+.+....|+...++..|   +.......++.+..-+...+..+++...++...+.++    ...   +++.
T Consensus        48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            34556667777778888888877666   2222213566777888888889999999999999888    555   7899


Q ss_pred             hHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch--hhhhhcceeeeccccchHHHHHhccchhhhhh---
Q 007725          121 NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR---  195 (591)
Q Consensus       121 eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~--eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~---  195 (591)
                      +++.+|.++|..+|.+..         +|.+|+.|+.++++++  +++++|+++|++||.|..+|++|+.++..+++   
T Consensus       128 ~EL~~~~~~l~~~pkny~---------aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          128 REFDILEAMLSSDPKNHH---------VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCC
T ss_pred             HHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccch
Confidence            999999999999999866         8999999999999999  99999999999999999999999999999988   


Q ss_pred             ---HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          196 ---LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       196 ---~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                         ++++++++++++.++|+|..+|..++.+...+++
T Consensus       199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence               9999999999999999999999999999888764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.82  E-value=2.5e-10  Score=106.61  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=82.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccch----------hHHHHHHHhhhccccccccccceeeeeeccccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFS----------NALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM  153 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~----------eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla  153 (591)
                      .++.+...++..+..+++.++.+.++|.++...++|+          +|+.+|++||+++|..+.         +|+|+|
T Consensus        17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~---------A~~~LG   87 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIG   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH---------HHHHHH
Confidence            4788999999999999999999999999999998865          999999999999999876         899999


Q ss_pred             eeeeccc-----------cchhhhhhcceeeeccccchH
Q 007725          154 SCYLKTK-----------QYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       154 ~~y~~lg-----------~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+|..+|           +|++|+++|++||+++|++..
T Consensus        88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            9999885           899999999999999999853

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.81  E-value=3.2e-10  Score=103.97  Aligned_cols=91  Identities=7%  Similarity=-0.047  Sum_probs=80.8

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+..+.++|.++++.|+|++|+..|.++|.++|.++.         +|+++|.||..+|+|++|+.+|+++++++|+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~---------a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK---------ALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH---------HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            6667889999999999999999999999999999998865         8999999999999999999999999999999


Q ss_pred             ch-HHHHHhccchhhhhhHHH
Q 007725          179 NV-KALYRRGQAYKDIGRLEE  198 (591)
Q Consensus       179 ~~-~a~~~rg~al~~lg~~ee  198 (591)
                      +. .....++.+...++++.+
T Consensus       130 ~~~~~~~~l~~~~~~~~~~~~  150 (162)
T 3rkv_A          130 AASVVAREMKIVTERRAEKKA  150 (162)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            98 566677777766655544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.80  E-value=3.6e-10  Score=92.10  Aligned_cols=81  Identities=26%  Similarity=0.328  Sum_probs=43.1

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +..+..+|..++..|+|++|+.+|.+++.+.|.++.         +++++|.||.+.|+|++|+..|+++++++|++..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~   79 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA   79 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH
Confidence            344555555555555555555555555555544432         44555555555555555555555555555555555


Q ss_pred             HHHhccchhh
Q 007725          183 LYRRGQAYKD  192 (591)
Q Consensus       183 ~~~rg~al~~  192 (591)
                      ++++|.++..
T Consensus        80 ~~~l~~~~~~   89 (91)
T 1na3_A           80 KQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.80  E-value=2.7e-10  Score=97.81  Aligned_cols=104  Identities=10%  Similarity=-0.054  Sum_probs=93.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+.+.+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++.         +++++|.+|...|+++
T Consensus        27 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~   97 (131)
T 2vyi_A           27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK---------AYGRMGLALSSLNKHV   97 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH---------HHHHHHHHHHHhCCHH
Confidence            4555666666666667777889999999999999999999999999999888765         7899999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhH
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  196 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~  196 (591)
                      +|+..|+++++++|++..+++.++.++..+|++
T Consensus        98 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           98 EAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999998876

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.79  E-value=1.3e-10  Score=117.50  Aligned_cols=136  Identities=13%  Similarity=0.006  Sum_probs=110.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee-------c
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA-------Y  175 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~-------l  175 (591)
                      ...++.+|..++..++|++|+.+|.+++.+.+.....   .....+|.++|.||..+|+|++|+..|+++++       .
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  191 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence            3455678999999999999999999999976554321   11233689999999999999999999999994       4


Q ss_pred             cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhc-cCCCCCccchH
Q 007725          176 DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKE-DGHHGPRGLLI  241 (591)
Q Consensus       176 dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~-~~a~~~~~~~i  241 (591)
                      .+..+.+|+++|.+|..+|+|++|+.++++++++.+..      ..++..++.+...+++. +++...++..+
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            55677899999999999999999999999999987644      56788999999988853 66655555555

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.78  E-value=2.3e-10  Score=119.57  Aligned_cols=126  Identities=12%  Similarity=0.078  Sum_probs=105.0

Q ss_pred             HHHHHHHhhhhcccc-------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee
Q 007725           84 EIATMRARIDAQMNY-------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY  156 (591)
Q Consensus        84 e~~~a~~~~~~~l~~-------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y  156 (591)
                      ++..+...+.+++..       .+..+..+..+|..+...|+|++|+.+|.+++.+.+....   ......++.|+|.||
T Consensus       158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y  234 (383)
T 3ulq_A          158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---PQLMGRTLYNIGLCK  234 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH
Confidence            344455555554443       5667789999999999999999999999999998775532   222345799999999


Q ss_pred             eccccchhhhhhcceeee-----cc-ccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          157 LKTKQYDECIKVGSEVLA-----YD-AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       157 ~~lg~y~eAi~~~~~AL~-----ld-P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      ..+|+|++|+..|+++++     .+ |..+.+++++|.+|..+|++++|+.+|++++.+.+.
T Consensus       235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999     46 889999999999999999999999999999998543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=8.3e-11  Score=122.84  Aligned_cols=200  Identities=14%  Similarity=0.050  Sum_probs=144.4

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHH---HHHHHh--hcCChHHHHHHHHhhhhcccc------cchHHHHHH
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVA---EIGEKL--ANASPEEIATMRARIDAQMNY------EFNAAKMLK  107 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~---a~~~k~--~~~~~~e~~~a~~~~~~~l~~------~~~~a~~lk  107 (591)
                      +...+...+...+.++....+++.....|++..   .....+  ......+++.+...+++.+..      .+..+..+.
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            444455556666777766666655444444322   111111  111223455566666665554      577889999


Q ss_pred             HhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-----------------chhhhhhcc
Q 007725          108 KQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------YDECIKVGS  170 (591)
Q Consensus       108 ~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-----------------y~eAi~~~~  170 (591)
                      .+|..++..|+|++|+.+|.+++.+.+....   ......+|.++|.+|...|+                 |++|+..|.
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGD---RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            9999999999999999999999998543211   11234589999999999999                 999999999


Q ss_pred             eeeecc------ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHHhhhccCCCCCcc
Q 007725          171 EVLAYD------AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       171 ~AL~ld------P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                      +++++.      +....+++++|.+|..+|++++|+.+|++++.+.|....      ++..++.+....++...+...++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            998874      456779999999999999999999999999999887555      77788888777777666555555


Q ss_pred             chH
Q 007725          239 LLI  241 (591)
Q Consensus       239 ~~i  241 (591)
                      ..+
T Consensus       288 ~al  290 (411)
T 4a1s_A          288 RTL  290 (411)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.77  E-value=2.1e-10  Score=96.11  Aligned_cols=87  Identities=21%  Similarity=0.176  Sum_probs=80.8

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC--CChHHHHHhHHHH
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKE  225 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~  225 (591)
                      +++++|.+|+..|+|++|+..|+++++++|.+..+++++|.++..+|++++|+.+|+++++++|+  +..++..++.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999  9999999999887


Q ss_pred             Hh-hhccCCC
Q 007725          226 IL-MKEDGHH  234 (591)
Q Consensus       226 ~l-~~~~~a~  234 (591)
                      .+ ++.+++.
T Consensus        88 ~~~~~~~~A~   97 (112)
T 2kck_A           88 YIEGKEVEAE   97 (112)
T ss_dssp             TCSSCSHHHH
T ss_pred             HHhCCHHHHH
Confidence            77 6655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.77  E-value=4.8e-10  Score=106.29  Aligned_cols=96  Identities=4%  Similarity=-0.093  Sum_probs=82.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +..+.++|.+++..|+|++|+.+|.+++.+.|.++.         +|+++|.||..+|+|++|+..|+++++++|++..+
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  158 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---------ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  158 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            378999999999999999999999999999888765         79999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHh-hhccccc
Q 007725          183 LYRRGQAYKDIGRLEEAV-SDLSNAH  207 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl-~~lekAl  207 (591)
                      +..++.++..++++.++. ..|.+.+
T Consensus       159 ~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          159 RNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999998887 4444443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.75  E-value=1.8e-10  Score=120.53  Aligned_cols=156  Identities=13%  Similarity=-0.013  Sum_probs=125.8

Q ss_pred             HHHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           84 EIATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        84 e~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      ++..|...+.+++..      .+..+..+..+|..++..|+|.+|+.+|.+++.+.+.....  ......++.++|.||.
T Consensus       116 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          116 EYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--SIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHH
Confidence            445566555555443      45578899999999999999999999999999987764320  1124558899999999


Q ss_pred             ccccchhhhhhcceeeeccc------cchHHHHHhccchhhhhhHHHHhhhcccccc-----cCCCCChHHHHHhHHHHH
Q 007725          158 KTKQYDECIKVGSEVLAYDA------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHE-----VSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~-----l~P~~~~a~~~L~~a~~~  226 (591)
                      .+|+|++|+..|.+++++.+      ....+++++|.+|..+|++++|+.+|++++.     .+|....++..++.+...
T Consensus       194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            99999999999999998743      3467899999999999999999999999999     788778889999999988


Q ss_pred             hhhccCCCCCccchH
Q 007725          227 LMKEDGHHGPRGLLI  241 (591)
Q Consensus       227 l~~~~~a~~~~~~~i  241 (591)
                      +++.+.+...++..+
T Consensus       274 ~g~~~~A~~~~~~al  288 (378)
T 3q15_A          274 AGQTQKAFQFIEEGL  288 (378)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            887766555544443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.75  E-value=6.3e-10  Score=90.64  Aligned_cols=80  Identities=30%  Similarity=0.434  Sum_probs=76.0

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +++++|.+|...++|++|+..|+++++++|++..+++++|.+|...|++++|+.+|++++.++|++..++..++.+...+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999998887654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.74  E-value=3.1e-10  Score=98.68  Aligned_cols=104  Identities=9%  Similarity=0.061  Sum_probs=87.9

Q ss_pred             HHHHHHHhhhhcccc---cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc
Q 007725           84 EIATMRARIDAQMNY---EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK  160 (591)
Q Consensus        84 e~~~a~~~~~~~l~~---~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg  160 (591)
                      +++.+...+++.+..   .+..+..+..+|.+++..|+|++|+.+|.+++++.|.++.         +++++|.||.++|
T Consensus         5 ~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~g   75 (117)
T 3k9i_A            5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA---------LRVFYAMVLYNLG   75 (117)
T ss_dssp             --CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---------HHHHHHHHHHHcC
Confidence            344566666667776   5888999999999999999999999999999999999876         8999999999999


Q ss_pred             cchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       161 ~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      +|++|+..|+++++++|+++...           .+..|+..|.+.+
T Consensus        76 ~~~~A~~~~~~al~~~p~~~~~~-----------~~~~ai~~~~~~l  111 (117)
T 3k9i_A           76 RYEQGVELLLKIIAETSDDETIQ-----------SYKQAILFYADKL  111 (117)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHH-----------HTHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHH-----------HHHHHHHHHHHHH
Confidence            99999999999999999988654           4666666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.74  E-value=1e-10  Score=120.91  Aligned_cols=154  Identities=15%  Similarity=0.083  Sum_probs=123.8

Q ss_pred             HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        85 ~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      +..+...+++.+..      .+..+..+..+|..++..|+|++|+.+|.+++.+.+....   ......++.++|.+|..
T Consensus        63 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~  139 (406)
T 3sf4_A           63 YAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHA  139 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHHHH
Confidence            44444444444332      4566889999999999999999999999999998776532   12234478999999999


Q ss_pred             ccc--------------------chhhhhhcceeeec------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          159 TKQ--------------------YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       159 lg~--------------------y~eAi~~~~~AL~l------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      .|+                    |++|+..|.+++.+      .|....+++++|.+|..+|++++|+.+|++++.+.|.
T Consensus       140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  219 (406)
T 3sf4_A          140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE  219 (406)
T ss_dssp             HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred             cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            999                    99999999999987      5677889999999999999999999999999999877


Q ss_pred             CCh------HHHHHhHHHHHhhhccCCCCCccchH
Q 007725          213 DGT------IADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       213 ~~~------a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      ...      ++..++.+....++...+...+...+
T Consensus       220 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  254 (406)
T 3sf4_A          220 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  254 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            655      78888888888877766655555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.74  E-value=8.5e-11  Score=104.44  Aligned_cols=135  Identities=14%  Similarity=0.115  Sum_probs=106.4

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-  179 (591)
                      ..+..+..+|..++..|+|++|+.+|.+++.+.+....   ......++.++|.+|...|+|++|+..|++++++.+.. 
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            34668899999999999999999999999998765432   11233478899999999999999999999999887653 


Q ss_pred             -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCcc
Q 007725          180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRG  238 (591)
Q Consensus       180 -----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a~~~~~  238 (591)
                           ..+++++|.++..+|++++|+.++++++.+.+..      ..++..++.+....++...+....+
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  153 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  153 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence                 7789999999999999999999999999875432      3456667777777666554444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.74  E-value=2.7e-10  Score=106.70  Aligned_cols=138  Identities=12%  Similarity=-0.044  Sum_probs=104.6

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-----
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-----  175 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-----  175 (591)
                      ..+..+..+|..++..|+|++|+.+|.+++.+......   ......++.++|.+|...|+|++|+..|.+++++     
T Consensus        24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  100 (203)
T 3gw4_A           24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLP  100 (203)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            45778889999999999999999999999986543221   1123457889999999999999999999999988     


Q ss_pred             -cc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC------hHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          176 -DA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG------TIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       176 -dP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~------~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                       ++ ....+++++|.++..+|++++|+.++++++.+.+...      .++..++.+....++...+....+..+
T Consensus       101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence             44 4567899999999999999999999999987754322      234667777777766665554444444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.73  E-value=2.1e-09  Score=114.48  Aligned_cols=136  Identities=11%  Similarity=0.019  Sum_probs=113.9

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccc---cccchhHHHHHHHhhhccccccccccceeeeeeccccce----e
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMS----C  155 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~----~  155 (591)
                      .+++.|...+++++...|+.+..+..+|..++.   .+++.+|++.|++++.++|.++.         ++.+++.    +
T Consensus       152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~---------~~~~l~~~~~~~  222 (472)
T 4g1t_A          152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQY---------LKVLLALKLHKM  222 (472)
T ss_dssp             THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHH---------HHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchH---------HHHHHHHHHHHH
Confidence            456788888999999999999999999988665   46678899999999999988765         5556654    5


Q ss_pred             eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      +...+++++|++.|++++.++|.+..+++++|.+|...|++++|+..|+++++++|++..++..++.+....
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~  294 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAK  294 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            566789999999999999999999999999999999999999999999999999999999999999886543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.73  E-value=9e-10  Score=112.40  Aligned_cols=111  Identities=12%  Similarity=0.012  Sum_probs=94.9

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc-
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN-  179 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~-  179 (591)
                      ..+..+.++|.++.. |+|++|+.+|.+++.+.+....   ......+|.|+|.+|.++|+|++|+..|++++++.|.+ 
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            356889999999999 9999999999999999775421   11124478999999999999999999999999987754 


Q ss_pred             -----hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChH
Q 007725          180 -----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       180 -----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a  216 (591)
                           ..+++++|.++..+|++++|+.+|++++ ++|.+...
T Consensus       190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence                 4588999999999999999999999999 99987643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.73  E-value=2.1e-10  Score=118.54  Aligned_cols=154  Identities=12%  Similarity=0.102  Sum_probs=124.4

Q ss_pred             HHHHHHhhhhcccc------cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           85 IATMRARIDAQMNY------EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        85 ~~~a~~~~~~~l~~------~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      +..+...+.+.+..      .+..+..+..+|..++..|+|++|+.+|.+++.+.+..+.   ......+|.++|.+|..
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~  239 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIF  239 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHH
Confidence            44555545444432      4556778999999999999999999999999998776532   11234478999999999


Q ss_pred             cccchhhhhhcceeeeccccc------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHH
Q 007725          159 TKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEI  226 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~  226 (591)
                      .|+|++|+..|++++++.+..      ..+++++|.+|...|++++|+.+|++++.+.+..      ..++..++.+...
T Consensus       240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  319 (406)
T 3sf4_A          240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA  319 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999998876      8899999999999999999999999999986654      4577788888888


Q ss_pred             hhhccCCCCCccchH
Q 007725          227 LMKEDGHHGPRGLLI  241 (591)
Q Consensus       227 l~~~~~a~~~~~~~i  241 (591)
                      +++...+...++..+
T Consensus       320 ~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          320 LGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            887777666655555

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.72  E-value=1.6e-09  Score=114.59  Aligned_cols=111  Identities=8%  Similarity=-0.006  Sum_probs=99.7

Q ss_pred             HHHHHHHhhhhccc----------------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeee
Q 007725           84 EIATMRARIDAQMN----------------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLA  147 (591)
Q Consensus        84 e~~~a~~~~~~~l~----------------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~  147 (591)
                      +++.|...|.+.+.                ..+..+..+.++|.++++.|+|++|+.+|.++|+++|.++.         
T Consensus       238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~---------  308 (370)
T 1ihg_A          238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---------  308 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------
T ss_pred             CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH---------
Confidence            45566666666666                56777899999999999999999999999999999988765         


Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhc
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDL  203 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~l  203 (591)
                      +|+++|.||..+|+|++|+.+|+++++++|++..++..++.++..+++++++...+
T Consensus       309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~  364 (370)
T 1ihg_A          309 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA  364 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.72  E-value=4.1e-10  Score=99.08  Aligned_cols=95  Identities=12%  Similarity=0.028  Sum_probs=88.3

Q ss_pred             eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      ..|+++|.+|+..|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+...
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   89 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   89 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCccchH
Q 007725          227 LMKEDGHHGPRGLLI  241 (591)
Q Consensus       227 l~~~~~a~~~~~~~i  241 (591)
                      +++...+...+...+
T Consensus        90 ~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           90 MESYDEAIANLQRAY  104 (137)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHH
Confidence            988777666666555

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.71  E-value=5e-10  Score=113.11  Aligned_cols=125  Identities=11%  Similarity=0.183  Sum_probs=99.4

Q ss_pred             HHHHHHHhhhhccccc------chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           84 EIATMRARIDAQMNYE------FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~------~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      +++.+...+...+...      ...+..+.++|.+++..|+|++|+.+|.+++.+....+.  .......+|+|+|.||.
T Consensus       130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHH
Confidence            4455665565555421      123567999999999999999999999999975443311  12234558999999999


Q ss_pred             ccccchhhhhhcceeeeccccc------hHHHHHhccchhhhhh-HHHHhhhcccccccC
Q 007725          158 KTKQYDECIKVGSEVLAYDAKN------VKALYRRGQAYKDIGR-LEEAVSDLSNAHEVS  210 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~------~~a~~~rg~al~~lg~-~eeAl~~lekAl~l~  210 (591)
                      ++|+|++|+..|+++|++.+..      +.+|+++|.+|..+|+ +++|+.+|++|+.+.
T Consensus       208 ~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            9999999999999999998665      8899999999999995 699999999998763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.70  E-value=3.9e-10  Score=117.67  Aligned_cols=125  Identities=16%  Similarity=0.116  Sum_probs=110.7

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec----
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----  175 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l----  175 (591)
                      +..+..+..+|..++..|+|++|+.+|.+++.+.|.++.     ....+|+++|.+|...|+|++|+..|++++++    
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  119 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-----TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            456778889999999999999999999999999887652     12347899999999999999999999999998    


Q ss_pred             --cccchHHHHHhccchhhhhhHHHHhhhccccccc------CCCCChHHHHHhHHHHHhhh
Q 007725          176 --DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV------SPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       176 --dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l------~P~~~~a~~~L~~a~~~l~~  229 (591)
                        +|..+.+++++|.+|..+|++++|+.+|++++.+      .|....++..++.+...+++
T Consensus       120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence              7889999999999999999999999999999998      45556688888888888887

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=1.2e-09  Score=111.52  Aligned_cols=131  Identities=13%  Similarity=0.040  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.|...+.......+..+ .++.+|..+++.++|++|+.+|++++.......       ...+++++|.++..+|++
T Consensus       116 g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~-------~~~a~~~LG~al~~LG~~  187 (282)
T 4f3v_A          116 GNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL-------AGAAGVAHGVAAANLALF  187 (282)
T ss_dssp             TCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH-------HHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc-------HHHHHHHHHHHHHHCCCH
Confidence            356678888888887888888 999999999999999999999998877531110       022689999999999999


Q ss_pred             hhhhhhcceeeecc--cc-chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          163 DECIKVGSEVLAYD--AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       163 ~eAi~~~~~AL~ld--P~-~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                      ++|+..|++++.-.  |. .+.+++++|.|+.++|+.++|+..|++++.++|+ ..++..|..
T Consensus       188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            99999999998544  65 7789999999999999999999999999999998 777666654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.69  E-value=7.9e-10  Score=109.56  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=94.7

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-  158 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-  158 (591)
                      +++.+...+.+.....  .+..+..+|..+..    .+++++|+.+|+++++..  ++.         +++++|.+|.. 
T Consensus        57 ~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~---------a~~~lg~~~~~~  123 (273)
T 1ouv_A           57 NLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAE---------GCASLGGIYHDG  123 (273)
T ss_dssp             CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---------HHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Ccc---------HHHHHHHHHHcC
Confidence            3444555555554432  56778888888888    888888888888888763  322         67888888888 


Q ss_pred             ---cccchhhhhhcceeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          159 ---TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       159 ---lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                         .+++++|+..|+++++++  ++.+++++|.+|..    .+++++|+.+|++++++.  +..++..++.+...
T Consensus       124 ~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          124 KVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHH  194 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHc
Confidence               888888888888888765  67788888888887    888888888888888763  45677777777666

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.68  E-value=7.9e-10  Score=93.89  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=68.9

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh--HHHHHhHHHH
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT--IADVLRDAKE  225 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~--a~~~L~~a~~  225 (591)
                      +++++|.+|++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|.+..  ....+..+..
T Consensus         9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A            9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999886543  3344444433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.67  E-value=2.1e-10  Score=114.27  Aligned_cols=140  Identities=16%  Similarity=0.099  Sum_probs=114.4

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-----------------
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-----------------  161 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-----------------  161 (591)
                      .+..+..+..+|..++..|+|++|+..|.+++.+.+....   ......++.++|.+|...|+                 
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV  155 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence            5556888999999999999999999999999998776432   12234478999999999999                 


Q ss_pred             ---chhhhhhcceeeec------cccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh------HHHHHhHHHHH
Q 007725          162 ---YDECIKVGSEVLAY------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT------IADVLRDAKEI  226 (591)
Q Consensus       162 ---y~eAi~~~~~AL~l------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~------a~~~L~~a~~~  226 (591)
                         |++|+..+++++.+      .+....+++++|.+|...|++++|+..|++++.+.+....      ++..++.+...
T Consensus       156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  235 (338)
T 3ro2_A          156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF  235 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence               99999999999887      4566789999999999999999999999999998776443      77778888777


Q ss_pred             hhhccCCCCCccchH
Q 007725          227 LMKEDGHHGPRGLLI  241 (591)
Q Consensus       227 l~~~~~a~~~~~~~i  241 (591)
                      .++...+...++..+
T Consensus       236 ~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          236 LGEFETASEYYKKTL  250 (338)
T ss_dssp             HTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            776665554444444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.65  E-value=2.6e-09  Score=112.13  Aligned_cols=170  Identities=9%  Similarity=-0.056  Sum_probs=143.0

Q ss_pred             CCchhhhhhhhhcCCChhHHHHHHHHhhcC--ChHHHHHHHHhhhhcccccchHHHHHHHhccccccc-c-cchhHHHHH
Q 007725           51 RPEDLKCAAEQLTHTPPEEVAEIGEKLANA--SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE-G-RFSNALQKY  126 (591)
Q Consensus        51 ~pe~~~~a~e~l~~~~pee~~a~~~k~~~~--~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~-g-~y~eAi~~Y  126 (591)
                      ..++.....+.+....|+....+..|-...  -...++.+..-+...+..+++...++...+.++... + ++.+++.+|
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            344566667777777888777766652111  111355677777888889999999999999998887 7 899999999


Q ss_pred             HHhhhccccccccccceeeeeeccccceeeeccccch--------hhhhhcceeeeccccchHHHHHhccchhhhhh---
Q 007725          127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD--------ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR---  195 (591)
Q Consensus       127 ~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~--------eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~---  195 (591)
                      .++|+.+|.+..         +|.+|+.++.++++++        +++++++++|+++|.|..+|+.|+.++..+++   
T Consensus       149 ~k~L~~dpkNy~---------AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          149 HGSLLPDPKNYH---------TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHTSSCTTCHH---------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHhCCCCHH---------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccccc
Confidence            999999999866         8999999999999998        99999999999999999999999999999987   


Q ss_pred             ----HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          196 ----LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       196 ----~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                          ++++++++++++.++|+|..+|..+.-+....+.
T Consensus       220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence                7999999999999999999999998887766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.65  E-value=3e-09  Score=111.12  Aligned_cols=111  Identities=11%  Similarity=0.056  Sum_probs=97.9

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeee----
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLA----  174 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~----  174 (591)
                      ....+..+..+|..+...|+|++|+.+|.+++.+.+....   ......++.|+|.||..+|+|++|+..|+++++    
T Consensus       178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence            4456888999999999999999999999999998654321   112355799999999999999999999999999    


Q ss_pred             -ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          175 -YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       175 -ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                       .+|..+.+++++|.+|..+|++++|+.++++++++.+.
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             78989999999999999999999999999999998765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.65  E-value=2.4e-09  Score=89.31  Aligned_cols=79  Identities=19%  Similarity=0.392  Sum_probs=71.2

Q ss_pred             ccccceeeeccccchhhhhhcceeeeccccchH-HHHHhccchhhhhhHHHHhhhcccccccCCCCChHH--HHHhHHHH
Q 007725          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK-ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIA--DVLRDAKE  225 (591)
Q Consensus       149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~-a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~--~~L~~a~~  225 (591)
                      .+++|.+|++.|+|++|+..|+++++++|+++. +|+++|.+|..+|++++|+.+|+++++++|++..++  ..+.++..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999 999999999999999999999999999999999887  55555544


Q ss_pred             Hh
Q 007725          226 IL  227 (591)
Q Consensus       226 ~l  227 (591)
                      ..
T Consensus        83 ~~   84 (99)
T 2kc7_A           83 FY   84 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.64  E-value=3.4e-09  Score=109.56  Aligned_cols=134  Identities=7%  Similarity=-0.166  Sum_probs=123.4

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccc--cchhHHHHHHHhhhccccccccccceeeeeeccccceee----ecc-
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG--RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY----LKT-  159 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g--~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y----~~l-  159 (591)
                      .+...+...+..+++...++..++.++...+  ++++++.++.++|..+|.+..         +|++|+.++    ..+ 
T Consensus        51 ~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~---------aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           51 RALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ---------IWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH---------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH---------HHHHHHHHHHHHHHhcc
Confidence            4677777888889999999999999999999  999999999999999999865         899999999    666 


Q ss_pred             --ccchhhhhhcceeeeccccchHHHHHhccchhhhhhHH--HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          160 --KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       160 --g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e--eAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                        +++++++.+|+++|+++|.|..+|+.|+.++..+++++  ++++.++++++++|.|-.+|.....+...++.
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              78999999999999999999999999999999999999  99999999999999999999988888777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.63  E-value=3.7e-10  Score=112.40  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=113.6

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+..+..+|..++..|+|++|+.+|.+++.+.+....   ......++.++|.+|...|++++|+..+++++++.+.
T Consensus       179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  255 (338)
T 3ro2_A          179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  255 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence            4455678999999999999999999999999998765432   1123447899999999999999999999999998877


Q ss_pred             c------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          179 N------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       179 ~------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      .      ..+++.+|.+|...|++++|+.+|++++.+.+..      ..++..++.+....++.+.+...++..
T Consensus       256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            6      8899999999999999999999999999987654      236777888887777666554444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.63  E-value=6.3e-10  Score=112.39  Aligned_cols=136  Identities=13%  Similarity=0.017  Sum_probs=106.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec---cccc
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY---DAKN  179 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l---dP~~  179 (591)
                      ...++.+|..+...|+|++|+.+|.+++.+.+.....   .....+|.++|.+|...|+|++|+..|++++++   .|++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~  191 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN  191 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc
Confidence            3556678888999999999999999999876544221   112447899999999999999999999999944   4442


Q ss_pred             ----hHHHHHhccchhhhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCC-CCCccchH
Q 007725          180 ----VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGH-HGPRGLLI  241 (591)
Q Consensus       180 ----~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a-~~~~~~~i  241 (591)
                          +.+++++|.+|..+|+|++|+.+|++++.+.++.      ..++..++.+...+++.+.+ ...+++.+
T Consensus       192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                3799999999999999999999999999886431      45778888888888876665 43344433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.63  E-value=6.3e-09  Score=108.58  Aligned_cols=165  Identities=11%  Similarity=-0.003  Sum_probs=138.9

Q ss_pred             CchhhhhhhhhcCCChhHHHHHHHHhhcC-------ChH----HHHHHHHhhhhcccccchHHHHHHHhccccccccc--
Q 007725           52 PEDLKCAAEQLTHTPPEEVAEIGEKLANA-------SPE----EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR--  118 (591)
Q Consensus        52 pe~~~~a~e~l~~~~pee~~a~~~k~~~~-------~~~----e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~--  118 (591)
                      .+++......+....|+....+..|-...       .++    .+.....-+...+..+++...++...+.++...++  
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence            34566777888888899888877662111       111    14566677777788899999999999999988884  


Q ss_pred             chhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc-chhhhhhcceeeeccccchHHHHHhccchhhh----
Q 007725          119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ-YDECIKVGSEVLAYDAKNVKALYRRGQAYKDI----  193 (591)
Q Consensus       119 y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~-y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~l----  193 (591)
                      |.+++.+|.++|+.+|.+..         +|.+|+.++...+. +++++++++++|+++|.|..+|++|+.++..+    
T Consensus       126 ~~~EL~~~~k~l~~dprNy~---------AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          126 WARELELCARFLEADERNFH---------CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            89999999999999999866         89999999999999 59999999999999999999999999999888    


Q ss_pred             ----------hhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          194 ----------GRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       194 ----------g~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                                +.++++++++.+++.++|+|..+|..+.-+..
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  238 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                      78999999999999999999999986665544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.62  E-value=1.4e-09  Score=109.86  Aligned_cols=125  Identities=11%  Similarity=0.187  Sum_probs=97.9

Q ss_pred             HHHHHHHhhhhccccc------chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           84 EIATMRARIDAQMNYE------FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~------~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      +++.+...+.+.+...      ...+..+.++|..++..|+|++|+.+|.+++.+....+..  ......+|+|+|.||.
T Consensus       130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--EEFDVKVRYNHAKALY  207 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--ccchHHHHHhHHHHHH
Confidence            4445666655555322      2247789999999999999999999999999654332210  0111248999999999


Q ss_pred             ccccchhhhhhcceeeecccc------chHHHHHhccchhhhhhHHHH-hhhcccccccC
Q 007725          158 KTKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEA-VSDLSNAHEVS  210 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~------~~~a~~~rg~al~~lg~~eeA-l~~lekAl~l~  210 (591)
                      ++|+|++|+..|++++++.+.      .+.+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus       208 ~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          208 LDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            999999999999999998754      388999999999999999999 77899998764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.62  E-value=1.5e-09  Score=107.61  Aligned_cols=126  Identities=14%  Similarity=0.160  Sum_probs=94.7

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-  158 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-  158 (591)
                      +++.+...+++.+.  +..+.++..+|..+..    .+++++|+.+|.++++..  ++.         +++++|.+|.. 
T Consensus        21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~---------a~~~lg~~~~~g   87 (273)
T 1ouv_A           21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN---------GCHLLGNLYYSG   87 (273)
T ss_dssp             CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---------HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH---------HHHHHHHHHhCC
Confidence            45556666666655  4556777888888888    888888888888888763  222         67788888888 


Q ss_pred             ---cccchhhhhhcceeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          159 ---TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       159 ---lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                         .+++++|+..|++++++  +++.+++++|.+|..    .+++++|+.+|+++++++  +..++..++.+...
T Consensus        88 ~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           88 QGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence               88888888888888776  478888888888888    888888888888888765  45666777766554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.62  E-value=2.8e-09  Score=90.63  Aligned_cols=102  Identities=23%  Similarity=0.284  Sum_probs=88.2

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+.+.+...+.....+..+|..++..|+|++|+..|.+++.+.|.++.         ++++++.+|...|+++
T Consensus        24 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~   94 (125)
T 1na0_A           24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE---------AWYNLGNAYYKQGDYD   94 (125)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH---------HHHHHHHHHHHhcCHH
Confidence            3445555566666666677788999999999999999999999999999887754         7889999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIG  194 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg  194 (591)
                      +|+..|+++++++|++..++++++.++...|
T Consensus        95 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           95 EAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999887654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.60  E-value=3.2e-09  Score=89.43  Aligned_cols=98  Identities=8%  Similarity=0.008  Sum_probs=86.6

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+..+..+..+|..++..|+|++|+..|.+++.+.|.++.         ++.++|.||...|+++
T Consensus        19 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~   89 (118)
T 1elw_A           19 NIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---------GYSRKAAALEFLNRFE   89 (118)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHhhHH
Confidence            4555666666666677777889999999999999999999999999999888765         7899999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccch
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      +|+..|+++++++|++..+++.++.+.
T Consensus        90 ~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           90 EAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999999998887764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.59  E-value=1.9e-08  Score=97.00  Aligned_cols=127  Identities=10%  Similarity=-0.018  Sum_probs=104.6

Q ss_pred             HHHHHHhhhhcccccchHHHHHHHhcccccccc----cchhHHHHHHHhhhccccccccccceeeeeeccccceeeec--
Q 007725           85 IATMRARIDAQMNYEFNAAKMLKKQGNELYSEG----RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK--  158 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g----~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~--  158 (591)
                      ++.+...+++...  ...+.++.++|..|.. +    ++++|+.+|+++++.  .++.         +++++|.+|..  
T Consensus        34 ~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~---------a~~~Lg~~y~~g~   99 (212)
T 3rjv_A           34 YQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKS---------GEIVLARVLVNRQ   99 (212)
T ss_dssp             HHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHH---------HHHHHHHHHHcCC
Confidence            3344444444433  2456788999999988 6    899999999999764  4443         78999999998  


Q ss_pred             --cccchhhhhhcceeeeccc--cchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          159 --TKQYDECIKVGSEVLAYDA--KNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       159 --lg~y~eAi~~~~~AL~ldP--~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                        .+++++|+..|++++++.|  +++.+++++|.+|..    .+++++|+.+|++++++ |.++.+...|+.+...
T Consensus       100 g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          100 AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence              8899999999999999988  579999999999998    88999999999999998 7778888888887654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.58  E-value=3.1e-09  Score=91.50  Aligned_cols=100  Identities=10%  Similarity=-0.026  Sum_probs=82.5

Q ss_pred             HHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (591)
Q Consensus        88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~  167 (591)
                      +...+.+.+...+..+..+..+|..++..|+|++|+..|.+++.+.|.++.         +|+++|.||...|++++|+.
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV---------AWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH---------HHHHHHHHHHHcCCHHHHHH
Confidence            344556666677888899999999999999999999999999999988765         79999999999999999999


Q ss_pred             hcceeeeccccc--hHHHHHhccchhhhhhH
Q 007725          168 VGSEVLAYDAKN--VKALYRRGQAYKDIGRL  196 (591)
Q Consensus       168 ~~~~AL~ldP~~--~~a~~~rg~al~~lg~~  196 (591)
                      .|+++++++|.+  ..++..+..++..+++.
T Consensus        75 ~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           75 AWESGLAAAQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccHHHHHHHHHHHHHhccc
Confidence            999999999864  44555555555555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=4.6e-09  Score=107.12  Aligned_cols=150  Identities=9%  Similarity=0.032  Sum_probs=126.9

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHh-------cccccccccchhHHHHHHHhhhccccccccccceeeeeeccc---
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQ-------GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLN---  151 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~-------Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~N---  151 (591)
                      +.+...+...+.+.....+..+++|..+       +.++...+++.+++..|.+++.+.|..-.         .+++   
T Consensus        19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~---------a~~~~~g   89 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN---------ARIAIGG   89 (282)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC---------CEEECCT
T ss_pred             CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh---------hhhccCC
Confidence            4556667778888888899999999999       89999999999999999999999888754         3344   


Q ss_pred             ------------------cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          152 ------------------SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       152 ------------------la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                                        ++.+|...|+|++|++.|+.++..+|++. ++|.+|.++++.++|++|+..|++++...++.
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~  168 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF  168 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc
Confidence                              56788999999999999999999999999 99999999999999999999999888764221


Q ss_pred             --ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          214 --GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       214 --~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                        ..++..++.+...+++..++...++.++
T Consensus       169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~  198 (282)
T 4f3v_A          169 LAGAAGVAHGVAAANLALFTEAERRLTEAN  198 (282)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence              3588999999999988777666655443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.57  E-value=1.3e-09  Score=96.57  Aligned_cols=107  Identities=19%  Similarity=0.224  Sum_probs=90.9

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc----
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA----  177 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP----  177 (591)
                      .+..+..+|..++..|+|++|+.+|.+++.+.+....   ......++.++|.+|...|+|++|+..+++++++.+    
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  124 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD  124 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc
Confidence            3468899999999999999999999999998765422   122345789999999999999999999999998743    


Q ss_pred             --cchHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          178 --KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       178 --~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                        ....+++.+|.+|..+|++++|+.++++++++..
T Consensus       125 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence              3477899999999999999999999999987654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=6.9e-09  Score=91.63  Aligned_cols=101  Identities=9%  Similarity=-0.026  Sum_probs=88.7

Q ss_pred             hHHHHHHHHhhhhcccccchH---HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           82 PEEIATMRARIDAQMNYEFNA---AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~---a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      ..++..+...+...+...+..   ...+..+|..++..|+|++|+..|.+++.+.|.++.         +|+++|.||..
T Consensus        41 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~a~~~~~  111 (148)
T 2dba_A           41 CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK---------ALYRRSQALEK  111 (148)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH---------HHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH---------HHHHHHHHHHH
Confidence            345666777777777777776   889999999999999999999999999999888755         78999999999


Q ss_pred             cccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725          159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~  191 (591)
                      .|+|++|+..|+++++++|++..++..++.+..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          112 LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            999999999999999999999998887776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.55  E-value=2.1e-09  Score=93.44  Aligned_cols=94  Identities=17%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccch---HHHHHhccchhhhhhHHHHhhhcccccccCCCC---ChHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD---GTIADVLR  221 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~---~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~---~~a~~~L~  221 (591)
                      .++++|.+++..|+|++|+..|+++++.+|++.   .+++.+|.+|..+|+|++|+.+|++++.++|++   ..++..++
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            577899999999999999999999999999998   899999999999999999999999999999999   77799999


Q ss_pred             HHHHHhhhccCCCCCccchH
Q 007725          222 DAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       222 ~a~~~l~~~~~a~~~~~~~i  241 (591)
                      .+...+++...+...++..+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~  103 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVA  103 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            99998887766655555444

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=3.2e-09  Score=102.56  Aligned_cols=112  Identities=11%  Similarity=0.031  Sum_probs=99.2

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc----cchhhhhhcceeeecc
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK----QYDECIKVGSEVLAYD  176 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg----~y~eAi~~~~~AL~ld  176 (591)
                      ..+.++..+|..++..+++++|+.+|+++++.  .++.         +++++|.+|.. +    ++++|+..|++++  +
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~---------a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~   81 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGD---------ALALLAQLKIR-NPQQADYPQARQLAEKAV--E   81 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHTTS-STTSCCHHHHHHHHHHHH--H
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHH---------HHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--H
Confidence            45678999999999999999999999999885  3433         78999999998 7    8999999999995  6


Q ss_pred             ccchHHHHHhccchhh----hhhHHHHhhhcccccccCCC--CChHHHHHhHHHHH
Q 007725          177 AKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPD--DGTIADVLRDAKEI  226 (591)
Q Consensus       177 P~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~--~~~a~~~L~~a~~~  226 (591)
                      +.++.+++++|.+|..    .+++++|+.+|+++++..|.  ++.++..|+.+...
T Consensus        82 ~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           82 AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            7899999999999998    88999999999999999883  57888889888765

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.50  E-value=1.2e-08  Score=107.14  Aligned_cols=134  Identities=8%  Similarity=-0.123  Sum_probs=123.8

Q ss_pred             HHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-c-cch
Q 007725           87 TMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-K-QYD  163 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-g-~y~  163 (591)
                      .+...+...+..+++...++..++.++...+ ++++++..+.++|..+|.+..         +|..|+.|+..+ + +++
T Consensus        72 ~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---------aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           72 RALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---------VWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHHHCCSCCH
T ss_pred             HHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhcCCChH
Confidence            4677778888889999999999999999988 599999999999999999866         899999999988 7 999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHH--------HHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLE--------EAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~e--------eAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +++++|+++|+++|.|..+|+.|+.++..+++++        +++++++++++++|.|..+|...+.+...++.
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999998        99999999999999999999999998877754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.50  E-value=4.5e-09  Score=98.20  Aligned_cols=126  Identities=15%  Similarity=0.111  Sum_probs=98.6

Q ss_pred             HHHHHHhhhhccc------ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           85 IATMRARIDAQMN------YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        85 ~~~a~~~~~~~l~------~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      ++.+...+++.+.      ..+..+..+.++|..+...|+|++|+.+|.+++.+....+..  ......++.++|.+|..
T Consensus        42 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~lg~~~~~  119 (203)
T 3gw4_A           42 FDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--PLAASANAYEVATVALH  119 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--HHHHHHHHHHHHHHHHH
Confidence            3444444444444      455678899999999999999999999999999984432210  00234578999999999


Q ss_pred             cccchhhhhhcceeeecccc------chHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          159 TKQYDECIKVGSEVLAYDAK------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      .|+|++|+..+++++++.+.      ...+++++|.++..+|++++|+.+|++++.+...
T Consensus       120 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          120 FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999977432      2456789999999999999999999999987554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.50  E-value=1.7e-08  Score=105.40  Aligned_cols=132  Identities=7%  Similarity=-0.101  Sum_probs=119.6

Q ss_pred             HHHhhhhcccccchHHHHHHHhccccccccc----------chhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           88 MRARIDAQMNYEFNAAKMLKKQGNELYSEGR----------FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        88 a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~----------y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      +...+...+..+|+...++...+.++...++          +.+++.++.++|..+|.+..         +|.+|+.|+.
T Consensus        49 aL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~---------aW~hR~wlL~  119 (331)
T 3dss_A           49 VLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLLS  119 (331)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHh
Confidence            5566677777888888899988888877666          78999999999999999876         8999999999


Q ss_pred             cccc--chhhhhhcceeeeccccchHHHHHhccchhhhhh-HHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          158 KTKQ--YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR-LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       158 ~lg~--y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~-~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      .+++  |++++.+|+++|++||.|..+|+.|+.++..+|. ++++++++.+++.++|.|..+|..+..+...+.
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~  193 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  193 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred             ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence            9984  8999999999999999999999999999999999 699999999999999999999999999888774

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.47  E-value=1.6e-08  Score=93.52  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=93.7

Q ss_pred             cccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc---cchhhhhhcceeeecc-c-cchHHHHHhcc
Q 007725          114 YSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVLAYD-A-KNVKALYRRGQ  188 (591)
Q Consensus       114 ~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg---~y~eAi~~~~~AL~ld-P-~~~~a~~~rg~  188 (591)
                      ........+.+.|.+.+...+.+..         +.+++|.|+.+..   +++++|..++.+++.+ | ++.+++|++|.
T Consensus         9 l~~~~l~~~~~~y~~e~~~~~~~~~---------~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv   79 (152)
T 1pc2_A            9 VSVEDLLKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   79 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCCCHH---------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCcHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence            3445567788889988886665544         7889999999988   7889999999999999 8 78999999999


Q ss_pred             chhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          189 AYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       189 al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +|+++|+|++|+.+++++++++|+|..+......++.++.+
T Consensus        80 ~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           80 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888754

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.46  E-value=3.3e-08  Score=108.24  Aligned_cols=169  Identities=6%  Similarity=-0.107  Sum_probs=116.4

Q ss_pred             hhhhhhhhhcC-CChhHHHHHHHHhhcC-ChHHHHHHHHhhhhcccccchHH-HHHHHhcccccccccchhHHHHHHHhh
Q 007725           54 DLKCAAEQLTH-TPPEEVAEIGEKLANA-SPEEIATMRARIDAQMNYEFNAA-KMLKKQGNELYSEGRFSNALQKYLLAK  130 (591)
Q Consensus        54 ~~~~a~e~l~~-~~pee~~a~~~k~~~~-~~~e~~~a~~~~~~~l~~~~~~a-~~lk~~Gn~~~~~g~y~eAi~~Y~kAL  130 (591)
                      +...+++.... ..|+....+...+... ..++++.+...+++.+...+... ..+...|..+.+.|++++|+..|.+|+
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            44455554443 4555444333321111 12345567777777777666653 578888888888899999999999998


Q ss_pred             hccccccccccceeeeeeccccce-eeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          131 KNLQGIHSSEGRTLLLACSLNSMS-CYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       131 ~l~p~~~~~e~~~l~~~~~~Nla~-~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                      +..|....         .|...+. +|...|++++|+..|+++|+++|+++.+|..++..+..+|++++|...|++++..
T Consensus       384 ~~~~~~~~---------~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          384 EDARTRHH---------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             TCTTCCTH---------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             hccCCchH---------HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            87665432         2333332 2446889999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCh----HHHHHhHHHHHhhhcc
Q 007725          210 SPDDGT----IADVLRDAKEILMKED  231 (591)
Q Consensus       210 ~P~~~~----a~~~L~~a~~~l~~~~  231 (591)
                      .|.+++    ++......+...++.+
T Consensus       455 ~~~~~~~~~~lw~~~~~~e~~~G~~~  480 (530)
T 2ooe_A          455 GSLPPEKSGEIWARFLAFESNIGDLA  480 (530)
T ss_dssp             CCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            776654    6666555555555433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.46  E-value=1.2e-08  Score=86.51  Aligned_cols=73  Identities=10%  Similarity=-0.018  Sum_probs=66.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      +++.+..+..+|..++..|+|++|+.+|+++++++|.++.         +|+++|.||..+|+|++|+..|++++++.|.
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------TYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            4566788999999999999999999999999999998865         8999999999999999999999999999886


Q ss_pred             ch
Q 007725          179 NV  180 (591)
Q Consensus       179 ~~  180 (591)
                      +.
T Consensus        74 ~~   75 (100)
T 3ma5_A           74 EG   75 (100)
T ss_dssp             HS
T ss_pred             CC
Confidence            53

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.45  E-value=7e-09  Score=113.61  Aligned_cols=139  Identities=6%  Similarity=-0.128  Sum_probs=118.9

Q ss_pred             HHHHhhhhccc-ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhh
Q 007725           87 TMRARIDAQMN-YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        87 ~a~~~~~~~l~-~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      .+..-+++.+. ..++....+..++..+.+.|++++|+..|.+++.+.|.++.        .+|++++.++.+.|++++|
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~~~~~~~~~~~A  375 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSG  375 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch--------HHHHHHHHHHHHhcCHHHH
Confidence            56677777776 67888999999999999999999999999999999877631        2789999999999999999


Q ss_pred             hhhcceeeeccccchHHHHHhccc-hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCC
Q 007725          166 IKVGSEVLAYDAKNVKALYRRGQA-YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       166 i~~~~~AL~ldP~~~~a~~~rg~a-l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a  233 (591)
                      +..|.+|++..|.+...+...+.. +...|++++|+..|+++++++|+++.++..+..++..+++...+
T Consensus       376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~A  444 (530)
T 2ooe_A          376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT  444 (530)
T ss_dssp             HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHH
T ss_pred             HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhH
Confidence            999999999999888888776655 34689999999999999999999999998888887666554433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.42  E-value=8.5e-09  Score=113.27  Aligned_cols=131  Identities=12%  Similarity=0.104  Sum_probs=101.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec-------
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY-------  175 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l-------  175 (591)
                      +..+.+.+..+..+|+|++|+..|+++|++....-. +.+......+.|+|.+|..+|+|++|+..|+++|++       
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~  387 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHH  387 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCC
Confidence            344455566677899999999999999986543211 112235668999999999999999999999999986       


Q ss_pred             -cccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCCh---HHHHHhHHHHHhhhccCCC
Q 007725          176 -DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGT---IADVLRDAKEILMKEDGHH  234 (591)
Q Consensus       176 -dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-----~P~~~~---a~~~L~~a~~~l~~~~~a~  234 (591)
                       .|+-+..++++|.+|..+|+|++|+..|++|+++     -|+++.   +...|..++..++.++++.
T Consensus       388 ~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          388 NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence             4677889999999999999999999999999986     466654   4456666666666655443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.41  E-value=1.3e-08  Score=87.24  Aligned_cols=110  Identities=14%  Similarity=0.128  Sum_probs=89.1

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+...+...+..+..+..+|..++..|+|++|+.+|.+++.+.|.++..  ......+|+++|.+|...|+|+
T Consensus        19 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~   96 (131)
T 1elr_A           19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED--YRQIAKAYARIGNSYFKEEKYK   96 (131)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh--HHHHHHHHHHHHHHHHHhccHH
Confidence            45556666677767777778899999999999999999999999999998865210  0011337899999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhH
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRL  196 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~  196 (591)
                      +|+..|+++++++| +...+..++.++..+++.
T Consensus        97 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           97 DAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            99999999999999 688888888877766553

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.31  E-value=1.3e-08  Score=105.34  Aligned_cols=128  Identities=12%  Similarity=0.017  Sum_probs=99.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc------
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD------  176 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld------  176 (591)
                      +..+..+|..++..|+|++|+..|.+++.+.+.....   .....++.++|.+|...|+|++|+..|++++++.      
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence            4567888999999999999999999999987664320   1123356789999999999999999999999876      


Q ss_pred             --ccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC-----hHHHHHhHHHHHhhhccCC
Q 007725          177 --AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG-----TIADVLRDAKEILMKEDGH  233 (591)
Q Consensus       177 --P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~-----~a~~~L~~a~~~l~~~~~a  233 (591)
                        |....+++++|.+|...|++++|+..|++++.+.+...     .++..++.+....++..++
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence              44667888899999999999999999999998887532     3455666666666555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.22  E-value=1.2e-07  Score=102.45  Aligned_cols=110  Identities=13%  Similarity=0.207  Sum_probs=87.3

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--------cccchH
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------DAKNVK  181 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--------dP~~~~  181 (591)
                      .......|+|++|+..|+++|++....- .+.+......+.|+|.+|..+|+|++|+..|+++|++        .|+-+.
T Consensus       305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          305 FRRAKHYKSPSELLEICELSQEKMSSVF-EDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             HHHHTTTSCHHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHhhhccCHHHHHHHHHHHHHHhhCcc-ChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            3334457899999999999998643221 1112225568899999999999999999999999986        567788


Q ss_pred             HHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHHHH
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIADVL  220 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l-----~P~~~~a~~~L  220 (591)
                      .|+++|.+|..+|+|++|+..|++|+++     -|+++.+....
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~  427 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIK  427 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence            9999999999999999999999999986     46666555433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.22  E-value=1.6e-07  Score=84.71  Aligned_cols=119  Identities=9%  Similarity=-0.044  Sum_probs=93.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----c
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----T  159 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----l  159 (591)
                      +++.+...+.+..+.....+  .  +|..+...+.+++|+.+|+++.+.  .++.         +++|+|.+|..    .
T Consensus        10 d~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~---------a~~~Lg~~y~~G~g~~   74 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGN---------GCRFLGDFYENGKYVK   74 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHHHCSSSC
T ss_pred             CHHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHH---------HHHHHHHHHHcCCCCC
Confidence            44455555555544433323  3  899999989999999999999986  3333         78999999998    8


Q ss_pred             ccchhhhhhcceeeeccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725          160 KQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (591)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~  221 (591)
                      +++++|+..|++|.+.  .++.+++++|.+|..    .+++++|+.+|++|++..  ++.+...|+
T Consensus        75 ~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           75 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            9999999999999865  789999999999999    899999999999998873  445544443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.18  E-value=9.8e-08  Score=103.07  Aligned_cols=122  Identities=13%  Similarity=0.132  Sum_probs=93.6

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--------c
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--------D  176 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--------d  176 (591)
                      .+...-..+..+|+|++|+..|+++|++....- .+.+......+.|++.+|..+|+|++|+..|.++|.+        .
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            344444556778999999999999998643221 1122235668899999999999999999999999976        4


Q ss_pred             ccchHHHHHhccchhhhhhHHHHhhhccccccc-----CCCCChHHH---HHhHHHHHh
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-----SPDDGTIAD---VLRDAKEIL  227 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-----~P~~~~a~~---~L~~a~~~l  227 (591)
                      |.-+..++++|.+|..+|+|++|+..|++|+++     -|+++.+..   .|+.++..+
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            677889999999999999999999999999986     466665544   455544433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.16  E-value=2.3e-07  Score=78.57  Aligned_cols=68  Identities=13%  Similarity=-0.022  Sum_probs=60.8

Q ss_pred             eccccceeeecccc---chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          148 CSLNSMSCYLKTKQ---YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       148 ~~~Nla~~y~~lg~---y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                      ++..+|.+++..++   ..+|...+++||++||+++.+++.+|.+++..|+|++|+.+|+++++.+|.++.
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            56677777765544   799999999999999999999999999999999999999999999999999543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.12  E-value=9.9e-07  Score=95.23  Aligned_cols=127  Identities=14%  Similarity=0.069  Sum_probs=107.5

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhccccccc----ccchhHHHHHHHhhhccccccccccceeeeeecccccee-e
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSC-Y  156 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~-y  156 (591)
                      +.++..+...+.+.....+..+..+.++|..|...    +++++|+.+|++++   |+++.         +++++|.+ |
T Consensus       192 ~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~---------a~~~Lg~~~~  259 (452)
T 3e4b_A          192 PEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA---------SWVSLAQLLY  259 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH---------HHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH---------HHHHHHHHHH
Confidence            33667777778887777777788888899888665    79999999999998   67765         78999998 4


Q ss_pred             --eccccchhhhhhcceeeeccccchHHHHHhccchhhhh-----hHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          157 --LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-----RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       157 --~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-----~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                        ...+++++|+..|++++  +++++.+++++|.+|. .|     ++++|+.+|++|+   +.++.+...|+.+...
T Consensus       260 ~~~~~~d~~~A~~~~~~Aa--~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          260 DFPELGDVEQMMKYLDNGR--AADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HSGGGCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             hCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence              57899999999999998  4569999999999998 56     9999999999998   8899999999987554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.03  E-value=5.4e-07  Score=98.90  Aligned_cols=109  Identities=6%  Similarity=-0.066  Sum_probs=91.5

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--  175 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--  175 (591)
                      .++..+..+.++|..|..+|+|++|+.+|.++|.+....- .+..+.....|+|+|.+|..+|+|++|+..|++|+++  
T Consensus       346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY-HHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999998643211 1112225668999999999999999999999999986  


Q ss_pred             ------cccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          176 ------DAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       176 ------dP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                            .|...+.+-.++.++.+++.|.+|...|+++.
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  35567778899999999999999999998774

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.02  E-value=3.6e-07  Score=78.38  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +.-++.+|..++..++|..|+..|.+|++..+....                                    ..+..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~------------------------------------~~~~~~~i   48 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI------------------------------------STIDKVSV   48 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------------------------------CSSCHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC------------------------------------CcccHHHH
Confidence            345789999999999999999999999987543311                                    02344566


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +.++|.+|.++|++++|+..++++++++|++..+..++...+..+.
T Consensus        49 ~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~~   94 (104)
T 2v5f_A           49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHHH
Confidence            6677777777777777777777777777777666666665555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.01  E-value=6.3e-07  Score=82.85  Aligned_cols=102  Identities=9%  Similarity=-0.015  Sum_probs=83.5

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc---cchhHHHHHHHhhhcc-ccccccccceeeeeeccccceee
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCY  156 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g---~y~eAi~~Y~kAL~l~-p~~~~~e~~~l~~~~~~Nla~~y  156 (591)
                      .++++..+..+|...+.......+..+++|.++.+..   ++.++|..+++.++.. |...        ..|++++|..|
T Consensus        10 ~~~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~--------rd~lY~LAv~~   81 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ--------RDYVFYLAVGN   81 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH--------HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch--------HHHHHHHHHHH
Confidence            4556666777777776666677889999999999977   7889999999999987 5221        22899999999


Q ss_pred             eccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725          157 LKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       157 ~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      +++++|++|+++|+++|+++|+|..+..-+-.+-
T Consensus        82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999998876554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.98  E-value=6.7e-07  Score=76.67  Aligned_cols=48  Identities=15%  Similarity=-0.071  Sum_probs=23.3

Q ss_pred             HhccchhhhhhHHHHhhhcccccccC-------CCCChHHHHHhHHHHHhhhccC
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVS-------PDDGTIADVLRDAKEILMKEDG  232 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~-------P~~~~a~~~L~~a~~~l~~~~~  232 (591)
                      .+|..++..++|..|+.+|++|++..       +....++..|+.+..++++...
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~   64 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK   64 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHH
Confidence            44555555555555555555555432       1223455555555555554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.96  E-value=2.1e-06  Score=92.60  Aligned_cols=107  Identities=8%  Similarity=0.001  Sum_probs=95.0

Q ss_pred             HHHHhcccccccc---cchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc----ccchhhhhhcceeeeccc
Q 007725          105 MLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----KQYDECIKVGSEVLAYDA  177 (591)
Q Consensus       105 ~lk~~Gn~~~~~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l----g~y~eAi~~~~~AL~ldP  177 (591)
                      ++..+|..+...|   ++.+|+..|+++++..+....         .++++|.+|...    +++++|+..|++++   |
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~  245 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---------RVDSVARVLGDATLGTPDEKTAQALLEKIA---P  245 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C
Confidence            7889999999999   999999999999998777643         458999999877    79999999999998   9


Q ss_pred             cchHHHHHhccc-h--hhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          178 KNVKALYRRGQA-Y--KDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       178 ~~~~a~~~rg~a-l--~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      +++.+++++|.+ |  ...+++++|+.+|+++++.  .++.++..|+.+..
T Consensus       246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            999999999999 5  5789999999999999854  57889999998866

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=1.1e-06  Score=92.19  Aligned_cols=134  Identities=8%  Similarity=-0.001  Sum_probs=100.9

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec------cc
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY------DA  177 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l------dP  177 (591)
                      ..+..+|..+...|++++|+.+|.+++...+....   ..+...++.++|.+|...|+|.+|+..+.+++..      .+
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~  172 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR---VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP  172 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC---CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence            44566788888999999999999999987654432   2234557889999999999999999999998765      45


Q ss_pred             cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccch
Q 007725          178 KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLL  240 (591)
Q Consensus       178 ~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~  240 (591)
                      ..+.+|..++.+|..+|+|++|...|++++.+.+.........+.+...++........+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence            668899999999999999999999999999886654433444444445555444433343333

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.91  E-value=6.1e-07  Score=97.08  Aligned_cols=110  Identities=11%  Similarity=-0.012  Sum_probs=78.1

Q ss_pred             HHHHHHHhccccccc-----ccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc---cchhhhhhcceee
Q 007725          102 AAKMLKKQGNELYSE-----GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK---QYDECIKVGSEVL  173 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~-----g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg---~y~eAi~~~~~AL  173 (591)
                      .+.++..+|..+...     +++++|+..|.++++..+..           +++++|.+|...|   ++++|+..|++++
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~-----------a~~~lg~~y~~~g~~~~~~~A~~~~~~a~  358 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT-----------AQANLGAIYFRLGSEEEHKKAVEWFRKAA  358 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH-----------HHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH-----------HHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence            345566666666665     77777777777777653221           5677777777655   7788888888887


Q ss_pred             eccccchHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          174 AYDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       174 ~ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                      +.  +++.+++++|.+|..    .+++++|+.+|++|++.  .++.++..|+.+...
T Consensus       359 ~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          359 AK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence            65  677788888888877    77888888888888765  356677777777655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.91  E-value=3.7e-06  Score=100.82  Aligned_cols=122  Identities=13%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             Hhhhhcccc--cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725           90 ARIDAQMNY--EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (591)
Q Consensus        90 ~~~~~~l~~--~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~  167 (591)
                      ..++++.++  ..+....|.++|..+...|+|++|+..|.+|     +++.         .|.+++.|+.++|+|++|++
T Consensus      1090 ~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s---------ay~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1090 GNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS---------SYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH---------HHHHHHHHHHHcCCHHHHHH
Confidence            444444443  3566788999999999999999999999887     3433         57888888889999999988


Q ss_pred             hcceeeecccc---------------------------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHH
Q 007725          168 VGSEVLAYDAK---------------------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVL  220 (591)
Q Consensus       168 ~~~~AL~ldP~---------------------------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L  220 (591)
                      +|..|++.+++                           +...|++.|..+...|+|++|+..|.+|        ..|..+
T Consensus      1156 yL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rL 1227 (1630)
T 1xi4_A         1156 YLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL 1227 (1630)
T ss_pred             HHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHH
Confidence            88776654422                           2335667788888888888888888876        256666


Q ss_pred             hHHHHHhhhccCC
Q 007725          221 RDAKEILMKEDGH  233 (591)
Q Consensus       221 ~~a~~~l~~~~~a  233 (591)
                      +.+..++++++.+
T Consensus      1228 A~tLvkLge~q~A 1240 (1630)
T 1xi4_A         1228 ASTLVHLGEYQAA 1240 (1630)
T ss_pred             HHHHHHhCCHHHH
Confidence            6666666554443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.89  E-value=1.9e-07  Score=96.55  Aligned_cols=133  Identities=9%  Similarity=-0.021  Sum_probs=103.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---  179 (591)
                      +..+...|..++..|++++|+..|.+++...|....    .....++.++|.+|...|+|++|+..+++++.+.|..   
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch----hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence            456677888899999999999999999998765421    1123367889999999999999999999999987654   


Q ss_pred             ---hHHHHHhccchhhhhhHHHHhhhcccccccCC--------CCChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          180 ---VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP--------DDGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       180 ---~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P--------~~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                         ..+++++|.++...|++++|+..|++++.+.+        ....++..++.+....++..++...+..
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS  160 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence               34578999999999999999999999998753        2234566677777777665554444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.83  E-value=1.1e-06  Score=95.17  Aligned_cols=93  Identities=13%  Similarity=0.039  Sum_probs=42.6

Q ss_pred             HHHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----cccchhhhhhcceeee
Q 007725          103 AKMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLA  174 (591)
Q Consensus       103 a~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----lg~y~eAi~~~~~AL~  174 (591)
                      +.++..+|..+..    .+++++|+..|+++++..  ++.         +++++|.+|..    .+++++|++.|+++++
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~---------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~  179 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDS---------GQQSMGDAYFEGDGVTRDYVMAREWYSKAAE  179 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH---------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            3344444444444    444555555555444431  111         34445544444    4445555555554443


Q ss_pred             ccccchHHHHHhccchhh----hhhHHHHhhhcccccc
Q 007725          175 YDAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHE  208 (591)
Q Consensus       175 ldP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~  208 (591)
                      .  .++.+++++|.+|..    .+++++|+.+|+++++
T Consensus       180 ~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  215 (490)
T 2xm6_A          180 Q--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT  215 (490)
T ss_dssp             T--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             C--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence            2  344455555554444    4445555555554443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.73  E-value=8.6e-06  Score=82.85  Aligned_cols=91  Identities=10%  Similarity=-0.022  Sum_probs=79.4

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc-----ccchhhhhhcceeeeccccc-hHHHHHhccc
Q 007725          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT-----KQYDECIKVGSEVLAYDAKN-VKALYRRGQA  189 (591)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l-----g~y~eAi~~~~~AL~ldP~~-~~a~~~rg~a  189 (591)
                      .+....|...++++|+++|....       ..+|.-+|..|.+.     |+.++|.++|++||+++|+. ...++..|..
T Consensus       176 l~~l~~A~a~lerAleLDP~~~~-------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~  248 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLWPSYQE-------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHH-------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCccc-------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            34457899999999999998432       23788899999884     99999999999999999975 9999999999


Q ss_pred             hhh-hhhHHHHhhhcccccccCCCC
Q 007725          190 YKD-IGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       190 l~~-lg~~eeAl~~lekAl~l~P~~  213 (591)
                      |+. .|++++|...+++|+..+|..
T Consensus       249 l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          249 LCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            988 499999999999999998874

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.70  E-value=4.7e-05  Score=91.43  Aligned_cols=62  Identities=19%  Similarity=0.092  Sum_probs=56.3

Q ss_pred             eeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCC
Q 007725          146 LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD  212 (591)
Q Consensus       146 ~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~  212 (591)
                      ..+|+++|.++...|+|++|+..|.+|     +++.+|++.+.++.++|+|++|+++|..|.+..++
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            347999999999999999999999876     88999999999999999999999999999888744

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.69  E-value=6.7e-06  Score=73.49  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=82.5

Q ss_pred             hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh---hhhhcceeeecc-c-cchHHHHHhccchhhhh
Q 007725          120 SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE---CIKVGSEVLAYD-A-KNVKALYRRGQAYKDIG  194 (591)
Q Consensus       120 ~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e---Ai~~~~~AL~ld-P-~~~~a~~~rg~al~~lg  194 (591)
                      ..+.+.|.+.+...+..+.         +.+|+|.|+.+.....+   +|..++..++.+ | ...+++|.+|.+++++|
T Consensus        18 ~~~~~~y~~e~~~~~~s~~---------~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHH---------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCCCcHH---------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence            4455667766664443322         56788888888776655   999999998887 6 78899999999999999


Q ss_pred             hHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          195 RLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       195 ~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +|++|+.+++..|+++|+|..+......++.++.+
T Consensus        89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           89 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988887754

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.69  E-value=1.5e-05  Score=83.78  Aligned_cols=128  Identities=11%  Similarity=0.031  Sum_probs=94.5

Q ss_pred             hhcCChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc-------chhHHH-HHH--Hhhhccccccccccceeee
Q 007725           77 LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR-------FSNALQ-KYL--LAKKNLQGIHSSEGRTLLL  146 (591)
Q Consensus        77 ~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~-------y~eAi~-~Y~--kAL~l~p~~~~~e~~~l~~  146 (591)
                      +....++.+..+...++++++..|+.+.++-.++.+++-...       ...++. .+.  .++...|.++.        
T Consensus       207 l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~--------  278 (372)
T 3ly7_A          207 LLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI--------  278 (372)
T ss_dssp             HHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH--------
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH--------
Confidence            344467778888888899988888877777766665532111       112221 222  22344444433        


Q ss_pred             eeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       147 ~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                       +|.-++.++...|++++|+..+++||.++|+ +-+|..+|.++...|++++|++.|++|+.++|..+
T Consensus       279 -~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          279 -IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             -HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             -HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence             5666777777789999999999999999975 67889999999999999999999999999999864

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.68  E-value=8.6e-06  Score=84.00  Aligned_cols=162  Identities=8%  Similarity=-0.064  Sum_probs=108.3

Q ss_pred             ccCCCchhhhhhhhhcCCCh--hHHHHHHHHh-hcCChHHHHHHHHhhhhcccccc------hHHHHHHHhcccccccc-
Q 007725           48 KNMRPEDLKCAAEQLTHTPP--EEVAEIGEKL-ANASPEEIATMRARIDAQMNYEF------NAAKMLKKQGNELYSEG-  117 (591)
Q Consensus        48 ~~~~pe~~~~a~e~l~~~~p--ee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~------~~a~~lk~~Gn~~~~~g-  117 (591)
                      ...+.++..+..++.....|  ..++.....+ ....-+..+.|.+.+++..+..+      +.+......+.+.+..| 
T Consensus       112 ~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~  191 (310)
T 3mv2_B          112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNK  191 (310)
T ss_dssp             HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCC
Confidence            34556666665555533332  3333322221 01112234456666655555555      34445555564455555 


Q ss_pred             -cchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec----------cccchHHHHHh
Q 007725          118 -RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY----------DAKNVKALYRR  186 (591)
Q Consensus       118 -~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l----------dP~~~~a~~~r  186 (591)
                       +|.+|...|++++...|+...       ...++|   |+.++|+|++|...++.++++          +|+++.++.|+
T Consensus       192 ~~~q~A~~~f~El~~~~p~~~~-------~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~  261 (310)
T 3mv2_B          192 ETATSNFYYYEELSQTFPTWKT-------QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ  261 (310)
T ss_dssp             STTTHHHHHHHHHHTTSCSHHH-------HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCccc-------HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence             999999999999887765110       114555   899999999999999988887          58899999999


Q ss_pred             ccchhhhhhHHHHhhhcccccccCCCCChHHHHHh
Q 007725          187 GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLR  221 (591)
Q Consensus       187 g~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~  221 (591)
                      ..+...+|+  +|.++++++.+++|+++-+.....
T Consensus       262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~  294 (310)
T 3mv2_B          262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE  294 (310)
T ss_dssp             HHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence            999988997  899999999999999987655443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.67  E-value=3.1e-06  Score=76.18  Aligned_cols=95  Identities=14%  Similarity=0.003  Sum_probs=82.4

Q ss_pred             ccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh--
Q 007725          115 SEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD--  192 (591)
Q Consensus       115 ~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~--  192 (591)
                      -.+++++|+.+|+++.+..  ++.         +.  +|.+|...+.+++|++.|+++.+.  .++.+++++|.+|..  
T Consensus         7 ~~~d~~~A~~~~~~aa~~g--~~~---------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~   71 (138)
T 1klx_A            7 VKKDLKKAIQYYVKACELN--EMF---------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK   71 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--CTT---------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred             CccCHHHHHHHHHHHHcCC--CHh---------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence            3568999999999999875  322         33  999999999999999999999866  899999999999998  


Q ss_pred             --hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          193 --IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       193 --lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                        .+++++|+.+|++|.+.  .++.+...|+.+...
T Consensus        72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence              89999999999999876  678888888888765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.64  E-value=1e-05  Score=87.24  Aligned_cols=105  Identities=15%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch---
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV---  180 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~---  180 (591)
                      ..+...|+.++..|+|++|+.+|.++       .          .|.+++.||.++|+|++|++.|.++.  +|...   
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~----------n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v  183 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV-------S----------NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEV  183 (449)
T ss_dssp             --------------CTTTHHHHHHHT-------T----------CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-------h----------hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHH
Confidence            48999999999999999999999977       1          37889999999999999999999994  33211   


Q ss_pred             -HHHHHh-----------------------ccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          181 -KALYRR-----------------------GQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       181 -~a~~~r-----------------------g~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                       .++...                       ...|.+.|+|++|+..|++++.+++.+..++..|+.+..+.
T Consensus       184 ~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          184 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence             222223                       36788899999999999999999999988888887775543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=1.1e-06  Score=92.07  Aligned_cols=134  Identities=5%  Similarity=-0.071  Sum_probs=103.9

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-----
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-----  177 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP-----  177 (591)
                      ..++.++|..|+..|+|++|+++|.+++.+.+.....   .....++.+++.++...+++++|+..|++++.+.+     
T Consensus        55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  131 (434)
T 4b4t_Q           55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS---KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV  131 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH---HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence            4568899999999999999999999999987665321   11123466788999999999999999999987644     


Q ss_pred             -cchHHHHHhccchhhhhhHHHHhhhcccccccCCC------CChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          178 -KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD------DGTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       178 -~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~------~~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                       ..+..++++|.+|...|+|++|+..+++++.....      ..+++..++.+...++++..+...+..
T Consensus       132 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  200 (434)
T 4b4t_Q          132 FLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA  200 (434)
T ss_dssp             SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence             45789999999999999999999999998765322      235677777777777766655444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.44  E-value=9.2e-06  Score=68.60  Aligned_cols=71  Identities=13%  Similarity=-0.032  Sum_probs=61.8

Q ss_pred             chHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725          100 FNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld  176 (591)
                      ++.+..+..+|..++..++   ..+|..+|.++|.++|.++.         +++.+|..+++.|+|++|+..|+++++.+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------ALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4567788888888865554   79999999999999999976         78889999999999999999999999999


Q ss_pred             ccc
Q 007725          177 AKN  179 (591)
Q Consensus       177 P~~  179 (591)
                      |..
T Consensus        74 p~~   76 (93)
T 3bee_A           74 DPN   76 (93)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            873

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.29  E-value=3.4e-05  Score=79.48  Aligned_cols=134  Identities=8%  Similarity=-0.098  Sum_probs=104.6

Q ss_pred             HHHHHHHHhhhhcccccc--hHHHHHHHhcccccccccchhHHHHHHHhhhcccc-----ccccccceeeeeecccccee
Q 007725           83 EEIATMRARIDAQMNYEF--NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQG-----IHSSEGRTLLLACSLNSMSC  155 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~--~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~-----~~~~e~~~l~~~~~~Nla~~  155 (591)
                      ++++.|...+++.+...+  ...+.+...+.++.+.|+++.|.+.+++..+..|+     +.          +.++++.+
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~----------~l~~Laea  183 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE----------MILNLAES  183 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH----------HHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH----------HHHHHHHH
Confidence            456667777777666554  77888888899999999999999999999888772     32          34556544


Q ss_pred             --eeccc--cchhhhhhcceeeecccc--chHHHHHhccchhhhhhHHHHhhhccccccc----------CCCCChHHHH
Q 007725          156 --YLKTK--QYDECIKVGSEVLAYDAK--NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV----------SPDDGTIADV  219 (591)
Q Consensus       156 --y~~lg--~y~eAi~~~~~AL~ldP~--~~~a~~~rg~al~~lg~~eeAl~~lekAl~l----------~P~~~~a~~~  219 (591)
                        ++..|  +|.+|...|++++...|+  ....+++   ++..+|+|++|..++++.+++          +|+++++..+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN  260 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN  260 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence              44445  999999999999888887  4556666   899999999999999988877          5888888877


Q ss_pred             HhHHHHHhhh
Q 007725          220 LRDAKEILMK  229 (591)
Q Consensus       220 L~~a~~~l~~  229 (591)
                      +..+...+++
T Consensus       261 ~i~l~~~lgk  270 (310)
T 3mv2_B          261 QITLALMQGL  270 (310)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhCh
Confidence            7766666653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.21  E-value=2.5e-05  Score=84.27  Aligned_cols=71  Identities=14%  Similarity=0.001  Sum_probs=38.0

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      .|.++|.++...|+|++|+.+|+.+        ..|.+++.||.++|+|++|++.+++|     +++.+|..+..+...+
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~  190 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG  190 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence            5667777777777777777777655        45667777777777777777777777     3455666666655555


Q ss_pred             hhcc
Q 007725          228 MKED  231 (591)
Q Consensus       228 ~~~~  231 (591)
                      ++.+
T Consensus       191 ~ef~  194 (449)
T 1b89_A          191 KEFR  194 (449)
T ss_dssp             TCHH
T ss_pred             CcHH
Confidence            5433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.16  E-value=3.8e-05  Score=82.79  Aligned_cols=95  Identities=8%  Similarity=-0.032  Sum_probs=72.9

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec--
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY--  175 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l--  175 (591)
                      .++..+..+.++|..|..+|+|++|+.+|.++|.+....- .+..+.....|+|+|.+|..+|+|++|+..|++|+++  
T Consensus       324 ~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l-g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~  402 (429)
T 3qwp_A          324 INIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF-PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR  402 (429)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4777889999999999999999999999999998642211 0112235668999999999999999999999999986  


Q ss_pred             ------cccchHHHHHhccchhhh
Q 007725          176 ------DAKNVKALYRRGQAYKDI  193 (591)
Q Consensus       176 ------dP~~~~a~~~rg~al~~l  193 (591)
                            .|...+.+.+++.++.++
T Consensus       403 ~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          403 VTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHH
Confidence                  244445555566655443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.01  E-value=5.4e-05  Score=81.68  Aligned_cols=77  Identities=10%  Similarity=-0.083  Sum_probs=64.0

Q ss_pred             ccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeec
Q 007725           98 YEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAY  175 (591)
Q Consensus        98 ~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~l  175 (591)
                      .++..+..+.++|..|..+|+|++|+.+|+++|.+....- .+..+.....|+|+|.+|..+|+|++|+..|++|+++
T Consensus       335 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l-G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          335 SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY-PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999998643211 0112225668999999999999999999999999986

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.98  E-value=0.00026  Score=74.48  Aligned_cols=172  Identities=9%  Similarity=0.040  Sum_probs=108.6

Q ss_pred             CcchHHHHHHHHhhChh---HHHHhhhhhccCCCchhhhhh---hhhcCCChhHHHHHHHHhhc---------CChHHHH
Q 007725           22 SPDDFARIQQQMMANPE---LMRIATENMKNMRPEDLKCAA---EQLTHTPPEEVAEIGEKLAN---------ASPEEIA   86 (591)
Q Consensus        22 ~p~~l~r~~~~~~~~p~---l~r~A~e~m~~~~pe~~~~a~---e~l~~~~pee~~a~~~k~~~---------~~~~e~~   86 (591)
                      +..+..++....-.|++   +.-++...+...++++..++.   ++....+|+...+.......         .......
T Consensus       179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~  258 (372)
T 3ly7_A          179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLA  258 (372)
T ss_dssp             CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence            33344444443444554   333455556666776665543   44445667654444332111         1111222


Q ss_pred             HHHHhhh--hcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           87 TMRARID--AQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        87 ~a~~~~~--~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      .+...+.  ..+...+..+..+..++..++..|++++|+..+.+|+.++|..          ..|.-+|.++.-.|++++
T Consensus       259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~----------~a~~llG~~~~~~G~~~e  328 (372)
T 3ly7_A          259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW----------LNYVLLGKVYEMKGMNRE  328 (372)
T ss_dssp             HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCH----------HHHHHHHHHHHHCCCHHH
Confidence            2221111  2334557777888888888888999999999999999997542          256788999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchh-hhhhHHHHhhhc
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYK-DIGRLEEAVSDL  203 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~-~lg~~eeAl~~l  203 (591)
                      |++.|.+|+.++|.....++....++. .+...+-++..|
T Consensus       329 A~e~~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~  368 (372)
T 3ly7_A          329 AADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF  368 (372)
T ss_dssp             HHHHHHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHH
T ss_pred             HHHHHHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhc
Confidence            999999999999998776666665543 555555444433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.94  E-value=0.00011  Score=65.66  Aligned_cols=99  Identities=8%  Similarity=-0.032  Sum_probs=78.7

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchh---HHHHHHHhhhcc-ccccccccceeeeeeccccceeee
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSN---ALQKYLLAKKNL-QGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~e---Ai~~Y~kAL~l~-p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      ++++..+..+|...+.......+..++++..+.+..+..+   +|..++..+... |..        ..-|++.+|..|+
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~--------~Rd~lY~LAvg~y   85 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--------QRDYVFYLAVGNY   85 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHH
Confidence            4566677777777766556677888999999988776665   999999988865 322        1238899999999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhcc
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~  188 (591)
                      ++|+|.+|+++|+..|+++|+|..+..-+..
T Consensus        86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           86 RLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            9999999999999999999999888755443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.79  E-value=0.00027  Score=63.43  Aligned_cols=82  Identities=11%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             eccccceeeeccc---cchhhhhhcceeeeccc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       148 ~~~Nla~~y~~lg---~y~eAi~~~~~AL~ldP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      +.+|.|.|+.+..   +..++|..++..++.+| ...+++|.+|.+++++|+|++|+.+++.+|+++|+|..+......+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4455555555544   45678999999988888 5688999999999999999999999999999999999999999998


Q ss_pred             HHHhhh
Q 007725          224 KEILMK  229 (591)
Q Consensus       224 ~~~l~~  229 (591)
                      +.++.+
T Consensus       122 e~ki~k  127 (134)
T 3o48_A          122 EDKIQK  127 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            888754

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.46  E-value=0.00063  Score=61.78  Aligned_cols=82  Identities=11%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             eccccceeeeccc---cchhhhhhcceeeeccc-cchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          148 CSLNSMSCYLKTK---QYDECIKVGSEVLAYDA-KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       148 ~~~Nla~~y~~lg---~y~eAi~~~~~AL~ldP-~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      +.+|++.|+.+..   +..++|..++..++.+| ...+++|.+|.+++++|+|++|+.+++..|+++|+|..+......+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            4556666666554   44578889998888888 5788999999999999999999999999999999999999999988


Q ss_pred             HHHhhh
Q 007725          224 KEILMK  229 (591)
Q Consensus       224 ~~~l~~  229 (591)
                      +.++.+
T Consensus       121 e~~i~k  126 (144)
T 1y8m_A          121 EDKIQK  126 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.35  E-value=0.00021  Score=66.59  Aligned_cols=102  Identities=11%  Similarity=0.085  Sum_probs=79.2

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccc-------
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDA-------  177 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP-------  177 (591)
                      .++.....++..+.|+.|+-.+..++.+...+++.-.-.....+++.+|.+++..++|..|...|++||.+.-       
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4566677788999999999999998887655543111122333678899999999999999999999875421       


Q ss_pred             ------------------cchHHHHHhccchhhhhhHHHHhhhcccc
Q 007725          178 ------------------KNVKALYRRGQAYKDIGRLEEAVSDLSNA  206 (591)
Q Consensus       178 ------------------~~~~a~~~rg~al~~lg~~eeAl~~lekA  206 (591)
                                        ...+..|..+.||.+++++++|+..++..
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                              11368899999999999999999999865

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.30  E-value=0.0008  Score=60.38  Aligned_cols=102  Identities=8%  Similarity=-0.004  Sum_probs=74.7

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc---cchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG---RFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g---~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      .++++....++|+..+ ...-.++..++.+..+.+..   +..++|..+...+...|...        .-|++.+|..|+
T Consensus        19 ~~eeL~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~--------Rd~LYyLAvg~y   89 (134)
T 3o48_A           19 YPQQLEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY   89 (134)
T ss_dssp             CHHHHHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh--------HHHHHHHHHHHH
Confidence            3445555666666654 22334567777777776554   44679999999888766432        238999999999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhccchh
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYK  191 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~  191 (591)
                      ++|+|.+|.++++..|+++|+|..+..-+..+--
T Consensus        90 klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~Ie~  123 (134)
T 3o48_A           90 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVED  123 (134)
T ss_dssp             HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999988765554443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.99  E-value=0.0015  Score=66.43  Aligned_cols=115  Identities=7%  Similarity=-0.014  Sum_probs=93.3

Q ss_pred             hhhhhhhcCCChhHHHHHHHHh------hcC------ChHHHHHHHHhhhhcccccch--HHHHHHHhccccccc-----
Q 007725           56 KCAAEQLTHTPPEEVAEIGEKL------ANA------SPEEIATMRARIDAQMNYEFN--AAKMLKKQGNELYSE-----  116 (591)
Q Consensus        56 ~~a~e~l~~~~pee~~a~~~k~------~~~------~~~e~~~a~~~~~~~l~~~~~--~a~~lk~~Gn~~~~~-----  116 (591)
                      ....+.+.+..|++++.+.|..      ...      ....+..++..+++++...++  ...++..+|..|...     
T Consensus       138 ~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g  217 (301)
T 3u64_A          138 QRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG  217 (301)
T ss_dssp             HHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT
T ss_pred             hhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC
Confidence            3456778888999999999972      111      123455777888888888888  566999999999885     


Q ss_pred             ccchhHHHHHHHhhhccccc-cccccceeeeeeccccceeeec-cccchhhhhhcceeeeccccc
Q 007725          117 GRFSNALQKYLLAKKNLQGI-HSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       117 g~y~eAi~~Y~kAL~l~p~~-~~~e~~~l~~~~~~Nla~~y~~-lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      |+.++|.++|++||+++|+. ..         .++..|..|.. .++++++.+.+++||.++|..
T Consensus       218 Gd~ekA~~~ferAL~LnP~~~id---------~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCSAHDPD---------HHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCSH---------HHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             CCHHHHHHHHHHHHHhCCCCCch---------HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999964 44         67788888877 599999999999999998874

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.96  E-value=0.0016  Score=59.14  Aligned_cols=99  Identities=8%  Similarity=0.018  Sum_probs=72.5

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhccccccccc---chhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGR---FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~---y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      .++++..+..+|..... ..-..+..++.+..+.+..+   -.++|..++..+...|...        .-|++.+|..|+
T Consensus        18 ~~eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~--------RdcLYyLAvg~y   88 (144)
T 1y8m_A           18 YPQQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY   88 (144)
T ss_dssp             CHHHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch--------hHHHHHHHHHHH
Confidence            34445555556655522 23456677888887776554   4679999999888666432        238899999999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhcc
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQ  188 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~  188 (591)
                      ++|+|.+|.++++..|+++|+|..+..-+..
T Consensus        89 kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           89 KLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             TTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            9999999999999999999999887654433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.07  E-value=0.0019  Score=59.12  Aligned_cols=119  Identities=13%  Similarity=-0.080  Sum_probs=89.1

Q ss_pred             HHHHhcccccccccc------hhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725          105 MLKKQGNELYSEGRF------SNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y------~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      .|...-..+-+.|+.      ++-++.|++|+...|... .-.-...+.+|++.+.. ...++.++|.+.|..++.+...
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKk   92 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKK   92 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHH
Confidence            344333333344555      778899999999988764 22333455567777754 5779999999999999999888


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      .++.|...|.-..+.|+...|...+.+|+.+.|...   ..|..+...+.
T Consensus        93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~---~~le~a~~nl~  139 (161)
T 4h7y_A           93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL---EMLEIALRNLN  139 (161)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH---HHHHHHHHhhh
Confidence            999999999999999999999999999999998754   34444544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.00  E-value=0.004  Score=70.79  Aligned_cols=130  Identities=8%  Similarity=-0.096  Sum_probs=103.2

Q ss_pred             HHhhhhcccccchHHHHHHHhcccccccccchhHH-HHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhh
Q 007725           89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNAL-QKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIK  167 (591)
Q Consensus        89 ~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi-~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~  167 (591)
                      ..-|++.+...+...+.|...+..+...|+.++|+ ..|.+|+..+|....         +|+..+.++.+.|++++|..
T Consensus       329 ~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~---------Lwl~~a~~ee~~~~~e~aR~  399 (679)
T 4e6h_A          329 TYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV---------LAFSLSEQYELNTKIPEIET  399 (679)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhCCHHHHHH
Confidence            34566777778888889999999999999999997 999999999887643         68888999999999999999


Q ss_pred             hcceeeecc-----------c-----------cchHHHHHhccchhhhhhHHHHhhhccccccc-CCCCChHHHHHhHHH
Q 007725          168 VGSEVLAYD-----------A-----------KNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV-SPDDGTIADVLRDAK  224 (591)
Q Consensus       168 ~~~~AL~ld-----------P-----------~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l-~P~~~~a~~~L~~a~  224 (591)
                      .|+++|..-           |           .....|...+....+.+..+.|...|.+|++. .+....++.....++
T Consensus       400 iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE  479 (679)
T 4e6h_A          400 TILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE  479 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            999999752           4           24567888888888899999999999999987 333445555444444


Q ss_pred             HHh
Q 007725          225 EIL  227 (591)
Q Consensus       225 ~~l  227 (591)
                      ..+
T Consensus       480 ~~~  482 (679)
T 4e6h_A          480 YHI  482 (679)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=93.38  E-value=0.013  Score=66.57  Aligned_cols=118  Identities=8%  Similarity=-0.083  Sum_probs=89.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccc-cchhhhhhcceeeeccccchH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK-QYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg-~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      ...|....+...+.|..+.|...|.+|++..|...        ..+|...+....+.+ +++.|...|+++|+..|+++.
T Consensus       434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--------~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~  505 (679)
T 4e6h_A          434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--------PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE  505 (679)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC--------THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC--------hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence            44667777777788889999999999998733221        114555555554554 589999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCC---CChHHHHHhHHHHHhh
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD---DGTIADVLRDAKEILM  228 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~---~~~a~~~L~~a~~~l~  228 (591)
                      .+...+..+...|+.+.|...|++|+...|+   ...++..+...+...|
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G  555 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG  555 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC
Confidence            9888888888899999999999999999884   3455666555555544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.35  E-value=0.007  Score=64.04  Aligned_cols=104  Identities=13%  Similarity=0.019  Sum_probs=72.4

Q ss_pred             HHHHHhcccccccccchhHHHHHHHhhhccccccccc-------------cceeeeeeccccceeeeccccchhhhhhcc
Q 007725          104 KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------------GRTLLLACSLNSMSCYLKTKQYDECIKVGS  170 (591)
Q Consensus       104 ~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------------~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~  170 (591)
                      +.+...|......|+...|+..|.+|+.+-.......             ..+.+..+...++.+++..|+|.+++..+.
T Consensus       116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~  195 (388)
T 2ff4_A          116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE  195 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3444445555556778888888888888754432110             112223344456677778888888888888


Q ss_pred             eeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          171 EVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       171 ~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      +++..+|-+-.+|..+-.+|...|+..+|+..|+++-
T Consensus       196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888888888888888888888888888888887763

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.64  E-value=0.021  Score=53.09  Aligned_cols=88  Identities=17%  Similarity=0.299  Sum_probs=61.3

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhcccccccccc----------c----ee--eeeeccccceeeeccccchhh
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG----------R----TL--LLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~----------~----~l--~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      .++.+..+|+.+|.+++|..|+..|++||.+....+....          .    .+  -.-+.+.++.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            4567888999999999999999999999886553321100          0    00  012567899999999999999


Q ss_pred             hhhcceeeeccccchHHHHHhccch
Q 007725          166 IKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       166 i~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      |..++.. -..-..++....+|..|
T Consensus       142 i~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9987653 22335666666666554

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.22  E-value=0.056  Score=59.07  Aligned_cols=80  Identities=9%  Similarity=-0.080  Sum_probs=72.3

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      |+.++|.+.+....+..|..+|.+|+.++|++...|+.+|......|++-+|+-+|-+++.....++.+..+|..+..+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            56677777777788899999999999999999999999999999999999999999999999888999999998877655

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=87.92  E-value=0.057  Score=58.77  Aligned_cols=129  Identities=10%  Similarity=-0.027  Sum_probs=77.7

Q ss_pred             HHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc--------cccee----------------
Q 007725           89 RARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS--------EGRTL----------------  144 (591)
Q Consensus        89 ~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~--------e~~~l----------------  144 (591)
                      ..-|++.+...+.....|...+..+...|+.++|...|.+|+.. |.+...        +..++                
T Consensus       199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~  277 (493)
T 2uy1_A          199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESA  277 (493)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-------
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchh
Confidence            34555555556666888888998899999999999999999999 775420        00000                


Q ss_pred             -------eeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhh-hHHHHhhhcccccccCCCCChH
Q 007725          145 -------LLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG-RLEEAVSDLSNAHEVSPDDGTI  216 (591)
Q Consensus       145 -------~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg-~~eeAl~~lekAl~l~P~~~~a  216 (591)
                             ...+|...+..+.+.+.++.|...|.+| ...+.....|...+......+ +++.|...|+.+++..|+.++.
T Consensus       278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~  356 (493)
T 2uy1_A          278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL  356 (493)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence                   0012222333333455566666777766 322223445544455444455 3777777777777766666554


Q ss_pred             HHH
Q 007725          217 ADV  219 (591)
Q Consensus       217 ~~~  219 (591)
                      +..
T Consensus       357 ~~~  359 (493)
T 2uy1_A          357 KEE  359 (493)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.57  E-value=0.094  Score=56.03  Aligned_cols=104  Identities=11%  Similarity=-0.066  Sum_probs=79.1

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc---
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD---  176 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld---  176 (591)
                      ......+..+|..|++.|+|.+|+++|.++.........      ...++.+.-.+++..++|..+...+.++..+-   
T Consensus       128 ~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~  201 (429)
T 4b4t_R          128 LEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG  201 (429)
T ss_dssp             CCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence            334557788999999999999999999999887655432      34467777788888999999999998886542   


Q ss_pred             --cc-chHHHHHhccchhhhhhHHHHhhhccccccc
Q 007725          177 --AK-NVKALYRRGQAYKDIGRLEEAVSDLSNAHEV  209 (591)
Q Consensus       177 --P~-~~~a~~~rg~al~~lg~~eeAl~~lekAl~l  209 (591)
                        |. ..+..+..|..+...++|.+|..+|-.++.-
T Consensus       202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence              11 1345556788888899999999888776543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=82.98  E-value=0.19  Score=57.53  Aligned_cols=56  Identities=11%  Similarity=0.173  Sum_probs=51.1

Q ss_pred             cceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          152 SMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       152 la~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      -+..++..|+|+-|++...+|+.+-|...+.|+.++.||..+|+|+.|+-.+..+-
T Consensus       343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            35555678999999999999999999999999999999999999999999988774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	591
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-12
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-10
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	7e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	2e-08
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	4e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.004
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	8e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.003

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 62.7 bits (151), Expect = 3e-12
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 95  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLL 146
           +M+ +     A ++K++G   +  G++  A+ +Y         +  L    S    + LL
Sbjct: 5   EMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLL 64

Query: 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
           A  LN   CYLK ++Y + ++   + L  D+ N K LYRRG+A   +   E A  D    
Sbjct: 65  AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 124

Query: 207 HEVSPDDGTIADVLRDAKEILMKED 231
            EV+P +      +   ++   + +
Sbjct: 125 LEVNPQNKAARLQIFMCQKKAKEHN 149

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)

Query: 100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNL-------QGIHSSEGRTLLLACSLNS 152
             +A  +K++GNE + +   + A+ KY  A             I   + + + ++C+LN 
Sbjct: 14  VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +CY K K Y + I   S+VL  D  NVKALY+ G A    G LEEA  +L  A  ++P+
Sbjct: 74  ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133

Query: 213 DGTIADVLRDAKEILMK 229
           +  I +        L +
Sbjct: 134 NLDIRNSYELCVNKLKE 150

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 7e-10
 Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSM 153
             ++ LK  GN  +    +  A++KY    + ++G  +       ++ + + L+C LN  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 154 SCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
           +C LK   +   +    E L  D  N KALYRR Q ++ +   ++A++DL  A E++P+D
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 214 GTIADVLRDAKEILMKED 231
             I   L   K+ +  + 
Sbjct: 145 KAIQAELLKVKQKIKAQK 162

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 7e-09
 Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ 161
           +A+ LK+QGN L+   ++  A   Y  A       +             N   CYLK +Q
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYT-----NRALCYLKMQQ 53

Query: 162 YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            ++ +      L  D ++VKA +  GQ   ++   +EA+++L  A+ ++ + 
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 1e-08
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           A   K+ GN+ Y +  F  AL+ Y  AK+      +    T   A            +  
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
           ++ I+VG E      +  KA  R G +Y    + ++A+   + +         +    + 
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DVLKKCQQ 120

Query: 223 AKEILMKE 230
           A++IL ++
Sbjct: 121 AEKILKEQ 128

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 2e-08
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
           A+ LK Q N+ +    + NA++ Y  A +                   N    YL+T+ Y
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------IYYGNRSLAYLRTECY 60

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
              +   +  +  D K +K  YRR  +   +G+   A+ D     +V P D       ++
Sbjct: 61  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 120

Query: 223 AKEILMKED 231
             +I+ ++ 
Sbjct: 121 CNKIVKQKA 129

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 95  QMNYE--FNAAKMLKKQGNELYSEGRFSNALQKYLLA------KKNLQGIHSSEGRTLLL 146
           +MN E     + ++K++G   + EG++  AL +Y         + +     + + + L L
Sbjct: 3   EMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRL 62

Query: 147 ACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA 206
           A  LN   C+LK + +   I+  ++ L  D+ N K L RRG+A+  +   E A +D    
Sbjct: 63  ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 122

Query: 207 HEVSPDDGTIADVLRDAKEILMKED 231
            ++ P++      L   ++ + ++ 
Sbjct: 123 LQLYPNNKAAKTQLAVCQQRIRRQL 147

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 9/113 (7%)

Query: 101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTK 160
           +         N L  +G  + A   Y  A +                   N  +   +  
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNNLANIKREQG 319

Query: 161 QYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +E +++  + L    +   A        +  G+L+EA+     A  +SP  
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 6/58 (10%), Positives = 19/58 (32%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
             +   ++   +   ++   +  N   L      +    RL+ +    + A + +P  
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 9/86 (10%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDEC 165
             +  +  Y  G F  A +  +   +            LL        S + + ++ D  
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWR----QEPDNTGVLL-----LLSSIHFQCRRLDRS 52

Query: 166 IKVGSEVLAYDAKNVKALYRRGQAYK 191
               +  +  +    +A    G  YK
Sbjct: 53  AHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 9/64 (14%), Positives = 22/64 (34%)

Query: 150 LNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEV 209
           +N  +   + + +D  +      L+    +          Y + G ++ A+     A E+
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 210 SPDD 213
            P  
Sbjct: 267 QPHF 270

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 9/85 (10%)

Query: 110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVG 169
            N    +G    A++ Y  A +    +              N  S   +  +  E +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALE----VFPEFAAAHS-----NLASVLQQQGKLQEALMHY 362

Query: 170 SEVLAYDAKNVKALYRRGQAYKDIG 194
            E +        A    G   K++ 
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY 162
              LK++GN+  S G   +ALQ Y  A K     H             N  + Y K   Y
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------VLYSNRSAAYAKKGDY 53

Query: 163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD 222
            +  + G + +       K   R+  A + + R EEA        +   ++  + + L++
Sbjct: 54  QKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113

Query: 223 AKE 225
            + 
Sbjct: 114 MEA 116

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 21/146 (14%), Positives = 36/146 (24%), Gaps = 38/146 (26%)

Query: 106 LKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLL-------------------- 145
           L  +G     +  +  AL  +   +     I  + G                        
Sbjct: 8   LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 146 --LACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN----------------VKALYRRG 187
                       Y +T++YD  IK   E L     N                 + LY   
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 188 QAYKDIGRLEEAVSDLSNAHEVSPDD 213
             Y      ++A   L+ A  +  + 
Sbjct: 128 FMYAKKEEWKKAEEQLALATSMKSEP 153

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 23/68 (33%)

Query: 156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT 215
            L   Q  + +++  E +    K+        +     G  E A   L  + ++ P+   
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 216 IADVLRDA 223
            A  LR  
Sbjct: 66  GASQLRHL 73

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 158 KTKQYDECIKVGSEVLA----YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD 213
            T Q +  +    ++LA     D +  + LY RG  Y  +G    A +D S A  + PD 
Sbjct: 11  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 10/61 (16%), Positives = 20/61 (32%)

Query: 153 MSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPD 212
            +      Q +E +      L      +++ Y  G +  ++G   EAV     A  +   
Sbjct: 213 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 272

Query: 213 D 213
            
Sbjct: 273 S 273

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 16/115 (13%), Positives = 29/115 (25%), Gaps = 8/115 (6%)

Query: 119 FSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK 178
           F N +       KN    + SE +  L             +  Y + ++    V   D  
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLF------LEAASGFYTQLLQELCTVFNVDLP 118

Query: 179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTI--ADVLRDAKEILMKED 231
                 + G            V   S++         +   D+ R   +    E 
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAES 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	591
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.7
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.67
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.62
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.47
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.35
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.35
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.34
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.33
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.29
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.29
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.26
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.26
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.14
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.02
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.02
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.98
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.96
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.94
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.85
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.8
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.76
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.76
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.47
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.46
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.31
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.14
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.08
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.83
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.79
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.58
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	95.16

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4e-19  Score=155.48  Aligned_cols=115  Identities=23%  Similarity=0.275  Sum_probs=109.8

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      .+..++.+|+.++..|+|++|+.+|.++|.++|.++.         +|+++|.||+++|+|++|+.+|+++|+++|+++.
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~   72 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------LYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK   72 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---------hhhcccccccccccccccchhhhhHHHhccchhh
Confidence            3567899999999999999999999999999999876         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHH
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKE  225 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~  225 (591)
                      +|+++|.+|..+|++++|+.+|+++++++|+++.++..++.++.
T Consensus        73 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          73 GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999988764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.70  E-value=2.2e-19  Score=164.67  Aligned_cols=132  Identities=30%  Similarity=0.451  Sum_probs=118.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc-------cceeeeeeccccceeeeccccchhhhhhcce
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------GRTLLLACSLNSMSCYLKTKQYDECIKVGSE  171 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~  171 (591)
                      ..+.+..++..|+.+|+.|+|.+|+.+|.++|.+.+......       ...+...+|+|+|.||+++++|++|+++|++
T Consensus        13 ~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~   92 (153)
T d2fbna1          13 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASK   92 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhc
Confidence            445677899999999999999999999999999887655321       2223456899999999999999999999999


Q ss_pred             eeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          172 VLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       172 AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      +|+++|.++++||++|.+|..+|+|++|+.+|+++++++|++..++..+..+..++.+.
T Consensus        93 al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          93 VLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.67  E-value=1.4e-18  Score=161.50  Aligned_cols=132  Identities=25%  Similarity=0.398  Sum_probs=118.5

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhcccccccc------ccceeeeeeccccceeeeccccchhhhhhccee
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSS------EGRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~------e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A  172 (591)
                      .++.+..++..|+.+|+.|+|.+|+.+|.+||.+.+.....      ....+...+|+|+|.||+++++|.+|+.+|+++
T Consensus        11 ~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          11 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            44567889999999999999999999999999987765431      233445668999999999999999999999999


Q ss_pred             eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      |+++|++.++|+++|.+|..+|+|++|+.+|++++.++|++..++..+..+...+...
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999999999999998887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-18  Score=161.44  Aligned_cols=133  Identities=24%  Similarity=0.375  Sum_probs=119.2

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc------cceeeeeeccccceeeeccccchhhhhhccee
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE------GRTLLLACSLNSMSCYLKTKQYDECIKVGSEV  172 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e------~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~A  172 (591)
                      ....+..+++.|+.+|+.|+|++|+.+|.++|.+.+......      ...+...+|.|+|.||+++|+|++|+.+|+++
T Consensus         9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a   88 (170)
T d1p5qa1           9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh
Confidence            444578899999999999999999999999999988765421      23345668899999999999999999999999


Q ss_pred             eeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          173 LAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       173 L~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      |+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+++.+...+..+...+.+..
T Consensus        89 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          89 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988776554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5e-18  Score=155.66  Aligned_cols=120  Identities=23%  Similarity=0.342  Sum_probs=112.9

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      ++.++.++.+||.+++.|+|++|+.+|.++|+++|.++.         +|+|+|.||+.+|++++|+.+|+++|+++|++
T Consensus         7 l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~   77 (159)
T d1a17a_           7 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------YYGNRSLAYLRTECYGYALGDATRAIELDKKY   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh---------hhhhhHHHHHhccccchHHHHHHHHHHHcccc
Confidence            355778999999999999999999999999999999866         89999999999999999999999999999999


Q ss_pred             hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          180 VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       180 ~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +.+|+++|.+|..+|+|++|+.+|++++.++|++..++..+..+...++
T Consensus        78 ~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  126 (159)
T d1a17a_          78 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK  126 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888866554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=4.1e-18  Score=159.71  Aligned_cols=103  Identities=26%  Similarity=0.368  Sum_probs=98.6

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ++.++++|+.+++.|+|++|+..|.++|.++|.++.         +|+|+|.||.++|+|++|+.+|++||+++|+++.+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~---------~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a   74 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV---------YYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   74 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------HHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHH
Confidence            567999999999999999999999999999999876         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                      |+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999998643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=8.1e-18  Score=155.93  Aligned_cols=130  Identities=28%  Similarity=0.494  Sum_probs=115.1

Q ss_pred             hHHHHHHHhcccccccccchhHHHHHHHhhhccccccc-------cccceeeeeeccccceeeeccccchhhhhhcceee
Q 007725          101 NAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHS-------SEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL  173 (591)
Q Consensus       101 ~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~-------~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL  173 (591)
                      ..+..++..|+.++..|+|.+|+..|.++|.+.+....       ....+....+|.|+|.||+++|+|++|+.+|++||
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34567889999999999999999999999987654332       12334566689999999999999999999999999


Q ss_pred             eccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhc
Q 007725          174 AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKE  230 (591)
Q Consensus       174 ~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~  230 (591)
                      +++|+++++|+++|.+|..+|+|++|+.+|+++++++|++..++..|..+...+...
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.6e-16  Score=138.49  Aligned_cols=117  Identities=21%  Similarity=0.296  Sum_probs=104.3

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccch-
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNV-  180 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~-  180 (591)
                      .+..++++|+.++..|+|++|+.+|+++|+++|.++.         +|.|+|.||.++|+|++|+.+|+++|+++|.+. 
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~   73 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT---------YITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE   73 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH---------HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHH
Confidence            4678999999999999999999999999999998865         899999999999999999999999999999875 


Q ss_pred             ------HHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          181 ------KALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       181 ------~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                            .+|+++|.++..+++|++|+.+|++++.++++ +++...+..+++.+.
T Consensus        74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence                  57778888889999999999999999998875 567777777766654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-15  Score=150.51  Aligned_cols=136  Identities=13%  Similarity=0.078  Sum_probs=120.2

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      +++.+...+++.+...++.+..+..+|..+...|++.+|+..|.+++...|.++.         ++.+++.+|.+.|+|+
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~  322 (388)
T d1w3ba_         252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD---------SLNNLANIKREQGNIE  322 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTTTCHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccch---------hhhHHHHHHHHCCCHH
Confidence            4556777777777788888888888999999999999999999999888887754         6888999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +|+..|+++|+++|+++.+|+++|.+|..+|++++|+.+|++|++++|+++.++..|+.+...++
T Consensus       323 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999887764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.6e-15  Score=144.38  Aligned_cols=120  Identities=21%  Similarity=0.071  Sum_probs=110.6

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ....+..++.+|.+|++.|+|++|+..|+++|.++|+++.         +|+++|.||.++|+|++|+.+|+++|+++|+
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~---------a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  103 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE---------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT  103 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH---------HHhhhchHHHHHHHHHHhhhhhhHHHHHHhh
Confidence            4557889999999999999999999999999999999876         8999999999999999999999999999999


Q ss_pred             chHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          179 NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ++.+|+++|.+|..+|++++|+.+|+++++++|++......+..+...+
T Consensus       104 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         104 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999887766666554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.9e-15  Score=131.32  Aligned_cols=114  Identities=15%  Similarity=0.145  Sum_probs=102.7

Q ss_pred             HHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec---cccchhhhhhcceeeeccccc--hH
Q 007725          107 KKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK---TKQYDECIKVGSEVLAYDAKN--VK  181 (591)
Q Consensus       107 k~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~---lg~y~eAi~~~~~AL~ldP~~--~~  181 (591)
                      -++.|.+...++|++|++.|+++|.++|.++.         +++|+|.|+.+   .+++++|+..|+++|..+|.+  +.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~---------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~   73 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHH
Confidence            35677888999999999999999999999877         89999999986   456778999999999988755  56


Q ss_pred             HHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          182 ALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       182 a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      +||++|.+|..+|+|++|+.+|+++++++|++..+...+..+..++.+
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999887754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.7e-15  Score=148.36  Aligned_cols=204  Identities=10%  Similarity=-0.036  Sum_probs=172.0

Q ss_pred             HHHHhhhhhccCCCchhhhhhhhhcCCChhHHHHHHHHhh-cCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc
Q 007725           39 LMRIATENMKNMRPEDLKCAAEQLTHTPPEEVAEIGEKLA-NASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG  117 (591)
Q Consensus        39 l~r~A~e~m~~~~pe~~~~a~e~l~~~~pee~~a~~~k~~-~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g  117 (591)
                      .+..+...++..+.++....++++....|.....+..... ....++++.|...+.+.+...++....+..+|..++..|
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccc
Confidence            4566888888889999999898888888888877666522 223456778888889888889999999999999999999


Q ss_pred             cchhHHHHHHHhhhccccccccc------------------------------------------cceeeeeecccccee
Q 007725          118 RFSNALQKYLLAKKNLQGIHSSE------------------------------------------GRTLLLACSLNSMSC  155 (591)
Q Consensus       118 ~y~eAi~~Y~kAL~l~p~~~~~e------------------------------------------~~~l~~~~~~Nla~~  155 (591)
                      ++++|++.|.+++.+.|......                                          .......++.++|.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            99999999999998877643200                                          001122356788999


Q ss_pred             eeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCC
Q 007725          156 YLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHG  235 (591)
Q Consensus       156 y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~  235 (591)
                      +...|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+++.+++..
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888877


Q ss_pred             CccchHH
Q 007725          236 PRGLLIE  242 (591)
Q Consensus       236 ~~~~~i~  242 (591)
                      .+.+.+.
T Consensus       262 ~~~~al~  268 (323)
T d1fcha_         262 HFLEALN  268 (323)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777663

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.9e-14  Score=146.46  Aligned_cols=167  Identities=10%  Similarity=-0.027  Sum_probs=121.7

Q ss_pred             cCCCchhhhhhhhhcCCChhHHHHHHHHhhcC--ChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHH
Q 007725           49 NMRPEDLKCAAEQLTHTPPEEVAEIGEKLANA--SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKY  126 (591)
Q Consensus        49 ~~~pe~~~~a~e~l~~~~pee~~a~~~k~~~~--~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y  126 (591)
                      ....++....++.+....|++..++..+....  ...+++.+...++..+..+++...++..+|.++...|+|++|+..|
T Consensus        56 ~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~  135 (315)
T d2h6fa1          56 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI  135 (315)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             CCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHH
Confidence            34556666666666677777777766653221  1123556777777777778888888888888888888888888888


Q ss_pred             HHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhh------HHHHh
Q 007725          127 LLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGR------LEEAV  200 (591)
Q Consensus       127 ~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~------~eeAl  200 (591)
                      .++|+++|.+..         +|.|+|.||..+++|++|+++|+++|+++|.+..+|++||.++..+++      +++|+
T Consensus       136 ~kal~~dp~n~~---------a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai  206 (315)
T d2h6fa1         136 ADILNQDAKNYH---------AWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV  206 (315)
T ss_dssp             HHHHHHCTTCHH---------HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred             hhhhhhhhcchH---------HHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhH
Confidence            888888777755         778888888888888888888888888888888888888877554443      67788


Q ss_pred             hhcccccccCCCCChHHHHHhHHH
Q 007725          201 SDLSNAHEVSPDDGTIADVLRDAK  224 (591)
Q Consensus       201 ~~lekAl~l~P~~~~a~~~L~~a~  224 (591)
                      .++.++++++|++..++..++.+.
T Consensus       207 ~~~~~al~~~P~~~~~~~~l~~ll  230 (315)
T d2h6fa1         207 QYTLEMIKLVPHNESAWNYLKGIL  230 (315)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHH
Confidence            888888888888877777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-14  Score=145.11  Aligned_cols=156  Identities=6%  Similarity=-0.095  Sum_probs=134.5

Q ss_pred             CChhHHHHHHHH-hhcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccc-cchhHHHHHHHhhhccccccccccc
Q 007725           65 TPPEEVAEIGEK-LANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEG-RFSNALQKYLLAKKNLQGIHSSEGR  142 (591)
Q Consensus        65 ~~pee~~a~~~k-~~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g-~y~eAi~~Y~kAL~l~p~~~~~e~~  142 (591)
                      .+|+..+++... ..-...+..+.|...+..++..+|....++..+|.++...+ +|++|+..|.++|+++|.+..    
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~----  113 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----  113 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh----
Confidence            356655554332 11111234557888899999999999999999999998876 589999999999999999866    


Q ss_pred             eeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhH
Q 007725          143 TLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRD  222 (591)
Q Consensus       143 ~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~  222 (591)
                           +|.++|.|+.++|+|++|+.+|+++|+++|++..+|+++|.++..++++++|+.+|+++++++|.+..++..++.
T Consensus       114 -----a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~  188 (315)
T d2h6fa1         114 -----VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF  188 (315)
T ss_dssp             -----HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             -----HHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence                 899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHhhh
Q 007725          223 AKEILMK  229 (591)
Q Consensus       223 a~~~l~~  229 (591)
                      +...++.
T Consensus       189 ~l~~~~~  195 (315)
T d2h6fa1         189 VISNTTG  195 (315)
T ss_dssp             HHHHTTC
T ss_pred             HHHHccc
Confidence            8776654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-14  Score=144.01  Aligned_cols=184  Identities=14%  Similarity=-0.003  Sum_probs=146.8

Q ss_pred             cCCCchhhhhhhhhcCCChhHHHHHHHHh-hcCChHHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHH
Q 007725           49 NMRPEDLKCAAEQLTHTPPEEVAEIGEKL-ANASPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYL  127 (591)
Q Consensus        49 ~~~pe~~~~a~e~l~~~~pee~~a~~~k~-~~~~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~  127 (591)
                      ....++.....+......|+......... ......+++.+...+.......+..+..+..+|..+++.|++++|+..|+
T Consensus       182 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  261 (388)
T d1w3ba_         182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR  261 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            33344444444444444455444433321 11122344556666666666777788889999999999999999999999


Q ss_pred             HhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhccccc
Q 007725          128 LAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       128 kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      +++++.|.++.         +|.++|.+|...|++.+|++.|++++...|.+...++.+|.++..+|++++|+..|++++
T Consensus       262 ~al~~~p~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  332 (388)
T d1w3ba_         262 RAIELQPHFPD---------AYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHTCSSCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHhCCCCHH---------HHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999998865         789999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          208 EVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       208 ~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +++|++..++..++.+...+++.+++...+++.+
T Consensus       333 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI  366 (388)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999888777666655544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.2e-14  Score=135.72  Aligned_cols=118  Identities=16%  Similarity=0.104  Sum_probs=100.0

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      +..++++|..++..|+|++|++.|.++.   +.++.         +|+|+|.||+.+|+|++|+++|++||++||+++.+
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~~~---------~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a   72 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSR---------ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA   72 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCCHH---------HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhh
Confidence            4567789999999999999999999753   33333         68999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCC----------------hHHHHHhHHHHHhhhccC
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----------------TIADVLRDAKEILMKEDG  232 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~----------------~a~~~L~~a~~~l~~~~~  232 (591)
                      |+++|.+|..+|+|++|+.+|++|+...+.+.                +++..++.+...+++...
T Consensus        73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~  138 (192)
T d1hh8a_          73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK  138 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999998877653                344566666666655444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.33  E-value=3.3e-14  Score=128.70  Aligned_cols=112  Identities=18%  Similarity=0.072  Sum_probs=100.1

Q ss_pred             hcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecc----------ccchhhhhhcceeeecccc
Q 007725          109 QGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKT----------KQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus       109 ~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~l----------g~y~eAi~~~~~AL~ldP~  178 (591)
                      .+..+-+.+.|++|+..|+++++++|+++.         +|+|+|.||+.+          +.+++|+..|++||+++|+
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~~P~~~~---------~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKSNPLDAD---------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhhCCcchH---------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            456677888999999999999999999977         899999999865          4557899999999999999


Q ss_pred             chHHHHHhccchhhhhh-----------HHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          179 NVKALYRRGQAYKDIGR-----------LEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       179 ~~~a~~~rg~al~~lg~-----------~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      ++.+|+++|.+|..+|+           |++|+.+|++|++++|++..++..|+.+....+.
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~  135 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL  135 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999998764           7999999999999999999999999988766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.29  E-value=2.4e-14  Score=130.57  Aligned_cols=112  Identities=17%  Similarity=0.256  Sum_probs=94.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhcccccccccc---ceeeeeeccccceeeeccccchhhhhhcceeeecccc-
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEG---RTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK-  178 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~---~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~-  178 (591)
                      +..++..|+.++..|+|++|+..|.++|++.|..+....   ......+|.|+|.||.++|+|++|+.+|+++|++.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            344566699999999999999999999999988765221   1123458999999999999999999999999988653 


Q ss_pred             ----------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCC
Q 007725          179 ----------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG  214 (591)
Q Consensus       179 ----------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~  214 (591)
                                ...+|+++|.+|..+|++++|+.+|++|+++.|...
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      466899999999999999999999999999977543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.29  E-value=8.1e-14  Score=120.22  Aligned_cols=94  Identities=7%  Similarity=-0.045  Sum_probs=89.4

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALY  184 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~  184 (591)
                      ..+++|..+++.|+|.+|+.+|+++|.++|.++.         +|+++|.||.+.+++++|+.+|+++|+++|+++.+|+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   88 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA   88 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccch---------hhhhhhhhhhhhhhHHHhhcccccccccccccccchH
Confidence            3577899999999999999999999999999866         8999999999999999999999999999999999999


Q ss_pred             HhccchhhhhhHHHHhhhccccc
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAH  207 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl  207 (591)
                      .+|.+|..+|++++|++.|++.|
T Consensus        89 ~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          89 ALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.9e-13  Score=126.29  Aligned_cols=119  Identities=14%  Similarity=0.101  Sum_probs=103.0

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      .++..|...+....   +..+..++++|.+++..|+|++|+.+|.+||+++|.++.         +|+|+|.||.++|+|
T Consensus        19 ~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~---------a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          19 KDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV---------AYFQRGMLYYQTEKY   86 (192)
T ss_dssp             TCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh---------hHHHHHHHHHhhccH
Confidence            34556666666543   334678999999999999999999999999999999876         899999999999999


Q ss_pred             hhhhhhcceeeecccc----------------chHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          163 DECIKVGSEVLAYDAK----------------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~----------------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      ++|+.+|++||...+.                ....+|++|.++..+|++++|+..|++|+.+.|+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999876442                35789999999999999999999999999999874

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-13  Score=136.93  Aligned_cols=123  Identities=12%  Similarity=0.092  Sum_probs=105.0

Q ss_pred             HHHHhhhhcccccch--HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchh
Q 007725           87 TMRARIDAQMNYEFN--AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDE  164 (591)
Q Consensus        87 ~a~~~~~~~l~~~~~--~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~e  164 (591)
                      .+...+.+.+...+.  .+..+..+|..+...|+|++|+..|.+++.+.|.++.         +|+++|.||.++|++++
T Consensus       154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~lg~~~~~~g~~~~  224 (323)
T d1fcha_         154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL---------LWNKLGATLANGNQSEE  224 (323)
T ss_dssp             HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccccccc---------chhhhhhcccccccchh
Confidence            344444444444333  4577889999999999999999999999999998865         79999999999999999


Q ss_pred             hhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725          165 CIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (591)
Q Consensus       165 Ai~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~  218 (591)
                      |++.|+++|+++|+++.+|+++|.+|..+|++++|+.+|++|++++|++..++.
T Consensus       225 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         225 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            999999999999999999999999999999999999999999999998765433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=6.9e-13  Score=127.98  Aligned_cols=127  Identities=9%  Similarity=-0.117  Sum_probs=108.6

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      +..+....+++.|+..+.+++...+-.+     +....+|+++|.||.+.|+|++|+..|+++|+++|+++.+|+++|.+
T Consensus         6 ~~~~~~~~~~e~al~~~~e~l~~~~~~~-----~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~   80 (259)
T d1xnfa_           6 AVPLQPTLQQEVILARMEQILASRALTD-----DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY   80 (259)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchH
Confidence            4456677788899999999887543221     11345899999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      |..+|++++|+.+|+++++++|++..++..++.+...+++...+...++..+
T Consensus        81 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_          81 LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887776655555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1e-11  Score=133.77  Aligned_cols=137  Identities=7%  Similarity=-0.068  Sum_probs=95.5

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccch
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYD  163 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~  163 (591)
                      .+..+...+.+.....++....+.++|..+.+.+++.+|+..|.+++.+++..           +++++|.+++..++|+
T Consensus       101 ~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~~LG~l~~~~~~~~  169 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH-----------CLVHLGDIARYRNQTS  169 (497)
T ss_dssp             HHHHHHHHHTC-------------------------------CCHHHHHHHHH-----------HHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHH-----------HHHHHHHHHHHcccHH
Confidence            45566777777777888889999999999999999999999999999886653           7889999999999999


Q ss_pred             hhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhcc
Q 007725          164 ECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKED  231 (591)
Q Consensus       164 eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~  231 (591)
                      +|+.+|.+|++++|++..+|+++|.++...|++.+|+.+|.+|+.++|.++.++.+|..+..+..+..
T Consensus       170 ~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~~  237 (497)
T d1ya0a1         170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESR  237 (497)
T ss_dssp             HHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999877765443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8.8e-12  Score=107.90  Aligned_cols=99  Identities=8%  Similarity=0.005  Sum_probs=92.4

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      ++++.|...+...+...+..+..+..+|.+++..|+|.+|+..|.+++.++|.++.         +|+++|.||..+|+|
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK---------GYSRKAAALEFLNRF   87 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhh---------HHHHHHHHHHHccCH
Confidence            35667888899999999999999999999999999999999999999999999876         899999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccch
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      ++|+.+|+++++++|+++.++..++.+.
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            9999999999999999999998887765

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=5.5e-12  Score=117.07  Aligned_cols=93  Identities=12%  Similarity=0.040  Sum_probs=87.0

Q ss_pred             ccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +.+.|.+|++.|+|++|+..|++||+++|.++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.+...++
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCccchH
Q 007725          229 KEDGHHGPRGLLI  241 (591)
Q Consensus       229 ~~~~a~~~~~~~i  241 (591)
                      ++..+...++..+
T Consensus        87 ~~~~A~~~~~~al   99 (201)
T d2c2la1          87 SYDEAIANLQRAY   99 (201)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            8887776666555

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.2e-11  Score=103.36  Aligned_cols=89  Identities=19%  Similarity=0.132  Sum_probs=58.8

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ++.++++|+.+++.|+|.+|+..|++|+++.|.++...                                    ++.+.+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~------------------------------------~~~~~~   48 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST------------------------------------IDKVSV   48 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS------------------------------------SCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC------------------------------------ccHHHH
Confidence            44688999999999999999999999999987764310                                    123344


Q ss_pred             HHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          183 LYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      |+++|.++.++|++++|+.+|+++++++|+++.++.+++.+++.+
T Consensus        49 l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          49 LDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            555555555555555555555555555555555555555554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-11  Score=107.21  Aligned_cols=106  Identities=8%  Similarity=-0.008  Sum_probs=92.7

Q ss_pred             hHHHHHHHHhhhhcccccchHHHHHHHhcccccc---cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec
Q 007725           82 PEEIATMRARIDAQMNYEFNAAKMLKKQGNELYS---EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK  158 (591)
Q Consensus        82 ~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~---~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~  158 (591)
                      .+++..+...|++++...+..+..++++|.++++   .+++.+|+..|+++|..+|....       ..+|+|+|.||.+
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~-------~~~~~~Lg~~y~~   84 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-------RDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchH-------HHHHHHHHHHHHH
Confidence            4678899999999999999999999999999986   55677899999999998765421       2378999999999


Q ss_pred             cccchhhhhhcceeeeccccchHHHHHhccchhhhh
Q 007725          159 TKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIG  194 (591)
Q Consensus       159 lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg  194 (591)
                      +|+|++|+.+|+++|+++|++..++..++.+..+++
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~  120 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  120 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence            999999999999999999999999988887766554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.5e-11  Score=109.12  Aligned_cols=110  Identities=8%  Similarity=0.032  Sum_probs=97.7

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      .+++.|...+.+.+..++..+..+.++|.+++..|+|++|+..|.++|+++|.+..         +|.++|.||..+|+|
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~---------a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK---------GYYRRAASNMALGKF   94 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchH---------HHHHHHHHHHHcCCH
Confidence            45777888888999999999999999999999999999999999999999999865         799999999999999


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchh--hhhhHHHHhh
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYK--DIGRLEEAVS  201 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~--~lg~~eeAl~  201 (591)
                      ++|+.+|+++++++|++..++..++.+..  ..+.+++|+.
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988877654  3444666654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.92  E-value=1.5e-11  Score=105.55  Aligned_cols=88  Identities=14%  Similarity=0.070  Sum_probs=82.6

Q ss_pred             eccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      .++++|.+|.+.|+|.+|+..|+++|+++|+++.+|+.+|.++..++++++|+.+|+++++++|++..++..|+.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhccCCCC
Q 007725          228 MKEDGHHG  235 (591)
Q Consensus       228 ~~~~~a~~  235 (591)
                      ++..++..
T Consensus        98 g~~~~A~~  105 (112)
T d1hxia_          98 HNANAALA  105 (112)
T ss_dssp             HHHHHHHH
T ss_pred             CCHHHHHH
Confidence            87665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.5e-11  Score=98.72  Aligned_cols=57  Identities=12%  Similarity=-0.098  Sum_probs=24.9

Q ss_pred             HhccchhhhhhHHHHhhhcccccccCCCC-------ChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          185 RRGQAYKDIGRLEEAVSDLSNAHEVSPDD-------GTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       185 ~rg~al~~lg~~eeAl~~lekAl~l~P~~-------~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      .+|.++++.|+|++|+.+|++|+++.|.+       .+++..|+.+..++++.+++...++.++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL   73 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL   73 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH
Confidence            34444444444444444444444443322       2344445555555444444444444333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.9e-11  Score=105.41  Aligned_cols=94  Identities=14%  Similarity=0.062  Sum_probs=82.1

Q ss_pred             ccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhh
Q 007725          149 SLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILM  228 (591)
Q Consensus       149 ~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~  228 (591)
                      +.++|.+|++.|+|++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..++..++.+...++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999999999999999999999999999887777777777766


Q ss_pred             hccCCCCCccchHH
Q 007725          229 KEDGHHGPRGLLIE  242 (591)
Q Consensus       229 ~~~~a~~~~~~~i~  242 (591)
                      ....+...+...+.
T Consensus        87 ~~~~~~~~~~~A~~  100 (128)
T d1elra_          87 NSYFKEEKYKDAIH  100 (128)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHhCCHHHHHH
Confidence            65555555555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=1.1e-10  Score=105.08  Aligned_cols=108  Identities=14%  Similarity=0.018  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhccccccc----------ccchhHHHHHHHhhhccccccccccceeeeeeccccc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSE----------GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSM  153 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~----------g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla  153 (591)
                      .++.|...++.++..+|+.+..+.++|.+++..          +.+++|+.+|+++|+++|.++.         +|+|+|
T Consensus        12 ~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~---------a~~~lG   82 (145)
T d1zu2a1          12 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE---------AVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHH
T ss_pred             cHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH---------HHhhHH
Confidence            478899999999999999999999999998854          5567899999999999999876         899999


Q ss_pred             eeeecccc-----------chhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHh
Q 007725          154 SCYLKTKQ-----------YDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       154 ~~y~~lg~-----------y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl  200 (591)
                      .+|..+|+           |++|+++|++||+++|++..++..++.+....+.|.++.
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988764           799999999999999999999999999998888888764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=9.9e-11  Score=109.34  Aligned_cols=114  Identities=12%  Similarity=0.047  Sum_probs=99.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccc-------------cceeeeeeccccceeeeccccchhh
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSE-------------GRTLLLACSLNSMSCYLKTKQYDEC  165 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e-------------~~~l~~~~~~Nla~~y~~lg~y~eA  165 (591)
                      .....+.++..|+.++..|++++|+.+|.+||.+.+++....             ..+....++.+++.+|+++|+|++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            345577899999999999999999999999999987664311             1223445788999999999999999


Q ss_pred             hhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccc-------cccCCC
Q 007725          166 IKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNA-------HEVSPD  212 (591)
Q Consensus       166 i~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekA-------l~l~P~  212 (591)
                      +.+|+++|+++|.+..+|++++.+|..+|++.+|+..|+++       +.++|.
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            99999999999999999999999999999999999999998       567775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=5.9e-10  Score=112.16  Aligned_cols=130  Identities=10%  Similarity=-0.067  Sum_probs=114.7

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeecccc--chhhhhhcceeeeccccchHH
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQ--YDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~--y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      .+...+..+...+++.+|+.+|++++..+|.++.         +|++++.++...++  +.+|+..|.++++++|.+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~---------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~  145 (334)
T d1dcea1          75 HLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC  145 (334)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH---------HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhh
Confidence            3455666677888899999999999999998876         78899988777765  789999999999999999888


Q ss_pred             H-HHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHH
Q 007725          183 L-YRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEE  243 (591)
Q Consensus       183 ~-~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e  243 (591)
                      + +.+|.++...+++++|+.++++++.++|.+..++..++.+...+++...+...+...+.-
T Consensus       146 ~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~  207 (334)
T d1dcea1         146 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV  207 (334)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH
T ss_pred             hhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence            6 577899999999999999999999999999999999999999999999888887776643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.80  E-value=3.6e-10  Score=103.41  Aligned_cols=95  Identities=9%  Similarity=0.006  Sum_probs=87.4

Q ss_pred             cccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecc
Q 007725           97 NYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYD  176 (591)
Q Consensus        97 ~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ld  176 (591)
                      ...+..+..+.++|.++++.|+|++|+..|.++|+++|.++.         +|+++|.||..+|+|++|+.+|.++|+++
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~---------a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK---------ALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh---------HHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            346667888999999999999999999999999999999876         89999999999999999999999999999


Q ss_pred             ccchHHHHHhccchhhhhhHHHHh
Q 007725          177 AKNVKALYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       177 P~~~~a~~~rg~al~~lg~~eeAl  200 (591)
                      |++..++..++.++..+..+.++.
T Consensus       142 p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         142 PEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888877764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.4e-10  Score=105.22  Aligned_cols=89  Identities=12%  Similarity=-0.075  Sum_probs=81.7

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+.++|.+|++.|+|++|+..|.++|.++|.++.         +|+++|.||+.+|+|++|+.+|+++++++|++..+
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~---------a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK---------GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhccccchh---------hhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            346778999999999999999999999999998866         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhHHHHh
Q 007725          183 LYRRGQAYKDIGRLEEAV  200 (591)
Q Consensus       183 ~~~rg~al~~lg~~eeAl  200 (591)
                      +..++.++..++++.+..
T Consensus       133 ~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         133 KTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988887776654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=5.8e-10  Score=112.20  Aligned_cols=131  Identities=14%  Similarity=-0.068  Sum_probs=109.8

Q ss_pred             HHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHH------------------------------HHHHhhhcc
Q 007725           84 EIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQ------------------------------KYLLAKKNL  133 (591)
Q Consensus        84 e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~------------------------------~Y~kAL~l~  133 (591)
                      .++.+...++..+..++....++..+|.+++..|+|++|+.                              .|.+++...
T Consensus       159 ~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            34567777888888899999999999998888877765443                              344444444


Q ss_pred             ccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          134 QGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       134 p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                      |...         ..+.+++.++...+++.+|+..|.+++..+|.+..+|+.+|.+|..+|++++|+.+|++++++||.+
T Consensus       239 ~~~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         239 AEPL---------FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             CCCS---------SSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             cchh---------hHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            4443         3788999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ChHHHHHhHH
Q 007725          214 GTIADVLRDA  223 (591)
Q Consensus       214 ~~a~~~L~~a  223 (591)
                      ...+..|...
T Consensus       310 ~~y~~~L~~~  319 (334)
T d1dcea1         310 AAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877553

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.76  E-value=2.5e-10  Score=104.72  Aligned_cols=88  Identities=10%  Similarity=-0.055  Sum_probs=81.1

Q ss_pred             HHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchH
Q 007725          102 AAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVK  181 (591)
Q Consensus       102 ~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~  181 (591)
                      ....+.++|.++++.|+|.+|+..|.++|.++|.+..         +|+++|.||..+|+|++|+.+|.+++.++|++..
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~---------a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK---------GLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            3456788999999999999999999999999998865         8999999999999999999999999999999999


Q ss_pred             HHHHhccchhhhhhHHH
Q 007725          182 ALYRRGQAYKDIGRLEE  198 (591)
Q Consensus       182 a~~~rg~al~~lg~~ee  198 (591)
                      ++..++.+...++++.+
T Consensus       134 ~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         134 ARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHH
Confidence            99999999888877665

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.58  E-value=1.8e-09  Score=97.39  Aligned_cols=85  Identities=5%  Similarity=-0.098  Sum_probs=77.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHH
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKA  182 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a  182 (591)
                      ...+.++|.+|++.|+|.+|+..|.++|.++|.+..         +|+++|.||..+|+|++|+.+|+++++++|++..+
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k---------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  137 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK---------ALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  137 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhh---------hhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            356788999999999999999999999999998865         89999999999999999999999999999999999


Q ss_pred             HHHhccchhhhhhH
Q 007725          183 LYRRGQAYKDIGRL  196 (591)
Q Consensus       183 ~~~rg~al~~lg~~  196 (591)
                      ...++.+..++++.
T Consensus       138 ~~~l~~~~~kl~~~  151 (153)
T d2fbna1         138 RNSYELCVNKLKEA  151 (153)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99888887766543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=4.4e-09  Score=104.17  Aligned_cols=114  Identities=14%  Similarity=-0.024  Sum_probs=95.0

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec-cccchhhhhhcceeeeccc
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK-TKQYDECIKVGSEVLAYDA  177 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~-lg~y~eAi~~~~~AL~ldP  177 (591)
                      ....+..+.+.|++|.+.|+|++|+.+|.+++.+.+....   ......++.+++.+|.. .++|++|++.|.+|+++.+
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc---chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            4556788999999999999999999999999998766532   11123467888888754 7999999999999998854


Q ss_pred             c------chHHHHHhccchhhhhhHHHHhhhcccccccCCCCCh
Q 007725          178 K------NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGT  215 (591)
Q Consensus       178 ~------~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~  215 (591)
                      .      ...++.++|.+|..+|+|++|+..|++++.+.+.+..
T Consensus       150 ~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~  193 (290)
T d1qqea_         150 QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             hcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchh
Confidence            3      4677999999999999999999999999999988753

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.7e-09  Score=111.30  Aligned_cols=121  Identities=14%  Similarity=-0.050  Sum_probs=75.9

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      +......+.|..|+..|.+++.+.|.+..         .+.++|.++.+.+++.+|+..+.+++.++|.  .+++++|.+
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l  161 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRV---------KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDI  161 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC----------------------------------------CCHHHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHH---------HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence            44455678889999999999988877654         7899999999999999999999999987764  689999999


Q ss_pred             hhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhhccCCCCCccchH
Q 007725          190 YKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLI  241 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i  241 (591)
                      +...++|++|+.+|++|+.++|++..++..|+.+....++...+...|.+.+
T Consensus       162 ~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877766544444433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1e-09  Score=108.93  Aligned_cols=134  Identities=10%  Similarity=0.011  Sum_probs=105.4

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc---
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN---  179 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~---  179 (591)
                      ++.+...|+.+...++|++|+++|.+|+++......   ......+|.|+|.||.++++|++|++.|++++++.+..   
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~---~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~  113 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGN---EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc
Confidence            556788899999999999999999999997543221   11134589999999999999999999999999987765   


Q ss_pred             ---hHHHHHhccchh-hhhhHHHHhhhcccccccCCCC------ChHHHHHhHHHHHhhhccCCCCCccc
Q 007725          180 ---VKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDD------GTIADVLRDAKEILMKEDGHHGPRGL  239 (591)
Q Consensus       180 ---~~a~~~rg~al~-~lg~~eeAl~~lekAl~l~P~~------~~a~~~L~~a~~~l~~~~~a~~~~~~  239 (591)
                         ..+++++|.+|. .+|++++|+..|++|+++.+..      ..++..++.+...++++..+...++.
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence               778999999885 5799999999999999886532      24566677777777766555544443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.31  E-value=1.4e-08  Score=100.24  Aligned_cols=92  Identities=11%  Similarity=0.023  Sum_probs=84.6

Q ss_pred             cccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccc
Q 007725          110 GNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQA  189 (591)
Q Consensus       110 Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~a  189 (591)
                      +..+++.|++++|+..|.++|+.+|.++.         ++.+++.+|...|+|++|+..|+++++++|++..+++.++.+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~---------ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~l   73 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDAS---------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   73 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34578899999999999999999999976         899999999999999999999999999999999999999999


Q ss_pred             hhhhhhHHHHhhhcccccccC
Q 007725          190 YKDIGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       190 l~~lg~~eeAl~~lekAl~l~  210 (591)
                      +...+..+++...+.+...+.
T Consensus        74 l~a~~~~~~a~~~~~~~~~~~   94 (264)
T d1zbpa1          74 VKAAQARKDFAQGAATAKVLG   94 (264)
T ss_dssp             HHHHHHHHHHTTSCCCEECCC
T ss_pred             HHhccccHHHHHHhhhhhccc
Confidence            999999999998887766554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.28  E-value=4.3e-08  Score=96.66  Aligned_cols=127  Identities=8%  Similarity=-0.006  Sum_probs=112.3

Q ss_pred             HHHHHHHHhhhhcccccchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccc
Q 007725           83 EEIATMRARIDAQMNYEFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQY  162 (591)
Q Consensus        83 ~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y  162 (591)
                      .+++.+...+++.++.+|+.+..+..+|..|+..|+|++|+..|+++++++|.+..         .+.+++.+++..+.+
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~---------~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP---------GASQLRHLVKAAQAR   80 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH---------HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHhcccc
Confidence            45777888889999999999999999999999999999999999999999998765         677888888888999


Q ss_pred             hhhhhhcceeee-ccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHH
Q 007725          163 DECIKVGSEVLA-YDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIAD  218 (591)
Q Consensus       163 ~eAi~~~~~AL~-ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~  218 (591)
                      .++...+.+.+. .+|.....++.++.++...|++++|+..++++.++.|..+..+.
T Consensus        81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            998888776544 46888899999999999999999999999999999998776543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=7.1e-08  Score=93.79  Aligned_cols=110  Identities=15%  Similarity=-0.016  Sum_probs=94.1

Q ss_pred             cchHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceee-----
Q 007725           99 EFNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVL-----  173 (591)
Q Consensus        99 ~~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL-----  173 (591)
                      ....+..+...+..+...|++++|+..|.+++...+.++.     .....+.++|.+|...|+|++|+..+++++     
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  283 (366)
T d1hz4a_         209 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-----FLQGQWRNIARAQILLGEFEPAEIVLEELNENARS  283 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-----GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            4445667788899999999999999999999998776543     133467789999999999999999999997     


Q ss_pred             -eccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCC
Q 007725          174 -AYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD  213 (591)
Q Consensus       174 -~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~  213 (591)
                       ...|....+++.+|.+|..+|++++|+..|++|+++.+..
T Consensus       284 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~  324 (366)
T d1hz4a_         284 LRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT  324 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhc
Confidence             4567889999999999999999999999999999986643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.08  E-value=2.5e-08  Score=89.75  Aligned_cols=92  Identities=12%  Similarity=0.000  Sum_probs=76.7

Q ss_pred             ccceeeeccccchhhhhhcceeeeccccc------------hHHHHHhccchhhhhhHHHHhhhcccccccCCCC-----
Q 007725          151 NSMSCYLKTKQYDECIKVGSEVLAYDAKN------------VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDD-----  213 (591)
Q Consensus       151 Nla~~y~~lg~y~eAi~~~~~AL~ldP~~------------~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~-----  213 (591)
                      ..|..++..|+|++|+..|++||+++|..            +.+|+++|.+|..+|+|++|+.++++++.+.|..     
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            34777888999999999999999998764            4689999999999999999999999999876532     


Q ss_pred             ------ChHHHHHhHHHHHhhhccCCCCCccchHH
Q 007725          214 ------GTIADVLRDAKEILMKEDGHHGPRGLLIE  242 (591)
Q Consensus       214 ------~~a~~~L~~a~~~l~~~~~a~~~~~~~i~  242 (591)
                            ..++.+++.+...+++.+.+...+...++
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                  23577888999999888877777776663

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.9e-07  Score=90.59  Aligned_cols=105  Identities=10%  Similarity=0.003  Sum_probs=88.3

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeecccc----
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----  178 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----  178 (591)
                      ++...-.|..++..|+|++|+.+|+++|.+.|.++.    .....++.++|.||...|+|++|+..|.+++++.+.    
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence            445555688899999999999999999999887642    112347888999999999999999999999987654    


Q ss_pred             --chHHHHHhccchhhhhhHHHHhhhcccccccCC
Q 007725          179 --NVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       179 --~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P  211 (591)
                        ...++++++.++...|++..|+..+.+++.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~  122 (366)
T d1hz4a_          88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN  122 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence              356789999999999999999999999987643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=7.7e-07  Score=77.13  Aligned_cols=70  Identities=10%  Similarity=0.117  Sum_probs=63.9

Q ss_pred             ccchhhhhhcceeeeccccc-hHHHHHhccchhhhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHhhh
Q 007725          160 KQYDECIKVGSEVLAYDAKN-VKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEILMK  229 (591)
Q Consensus       160 g~y~eAi~~~~~AL~ldP~~-~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l~~  229 (591)
                      .+.+++|..++++++.+|.+ .+++|++|.+|+++|+|++|+.+++++|+++|+|..+......++.++.+
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~k  122 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQK  122 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHhc
Confidence            56789999999999999976 58999999999999999999999999999999999999998888887753

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=1.4e-06  Score=75.39  Aligned_cols=101  Identities=8%  Similarity=0.005  Sum_probs=76.7

Q ss_pred             ChHHHHHHHHhhhhcccccchHHHHHHHhccccccc---ccchhHHHHHHHhhhccccccccccceeeeeeccccceeee
Q 007725           81 SPEEIATMRARIDAQMNYEFNAAKMLKKQGNELYSE---GRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYL  157 (591)
Q Consensus        81 ~~~e~~~a~~~~~~~l~~~~~~a~~lk~~Gn~~~~~---g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~  157 (591)
                      .++++....+++...+...+. ++..++.|.++.+.   .+..++|.++++++..+|.+.        .-|++++|.+|+
T Consensus        14 ~~~el~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~--------rd~lY~Lav~yy   84 (124)
T d2pqrb1          14 YPQQLEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR--------RECLYYLTIGCY   84 (124)
T ss_dssp             CHHHHHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH--------HHHHHHHHHHHH
Confidence            445555556666666433333 56777778777644   566899999999999877653        228999999999


Q ss_pred             ccccchhhhhhcceeeeccccchHHHHHhccch
Q 007725          158 KTKQYDECIKVGSEVLAYDAKNVKALYRRGQAY  190 (591)
Q Consensus       158 ~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al  190 (591)
                      ++|+|++|..+++++|+++|+|..+...+-.+.
T Consensus        85 klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          85 KLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            999999999999999999999998876554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=5.1e-07  Score=83.45  Aligned_cols=101  Identities=12%  Similarity=0.068  Sum_probs=85.6

Q ss_pred             eccccceeeeccccchhhhhhcceeeecccc----------------------chHHHHHhccchhhhhhHHHHhhhccc
Q 007725          148 CSLNSMSCYLKTKQYDECIKVGSEVLAYDAK----------------------NVKALYRRGQAYKDIGRLEEAVSDLSN  205 (591)
Q Consensus       148 ~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~----------------------~~~a~~~rg~al~~lg~~eeAl~~lek  205 (591)
                      .++++|..+...|++++|+..|++||.+.++                      +..++.+++.++..+|+|++|+.++++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            3556777778889999999999999887553                      346889999999999999999999999


Q ss_pred             ccccCCCCChHHHHHhHHHHHhhhccCCCCCccchHHHHHHhh
Q 007725          206 AHEVSPDDGTIADVLRDAKEILMKEDGHHGPRGLLIEEITEEV  248 (591)
Q Consensus       206 Al~l~P~~~~a~~~L~~a~~~l~~~~~a~~~~~~~i~e~~e~~  248 (591)
                      ++.++|.+..++..+..+...+++..++...|+.......++-
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eL  135 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL  135 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999888888777665544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=1e-06  Score=87.25  Aligned_cols=120  Identities=6%  Similarity=-0.182  Sum_probs=60.1

Q ss_pred             chHHHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccc
Q 007725          100 FNAAKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKN  179 (591)
Q Consensus       100 ~~~a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~  179 (591)
                      +.....+...+..+...|+++.|...|.++|...|.+..        .+|..++.++.+.++++.|++.|.++++..|.+
T Consensus        96 p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~--------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~  167 (308)
T d2onda1          96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTR  167 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc
Confidence            333344444555555555555555555555555444321        134444455555555555555555555555555


Q ss_pred             hHHHHHhccchh-hhhhHHHHhhhcccccccCCCCChHHHHHhHHHHHh
Q 007725          180 VKALYRRGQAYK-DIGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEIL  227 (591)
Q Consensus       180 ~~a~~~rg~al~-~lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~l  227 (591)
                      ...|...+.... ..|+.+.|...|++++...|++..++..+...+...
T Consensus       168 ~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            555555544322 234555555555555555555555554444443333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=5.7e-06  Score=81.66  Aligned_cols=136  Identities=5%  Similarity=-0.109  Sum_probs=108.3

Q ss_pred             HHHHHHhhhhcccccchHH-HHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceee-eccccc
Q 007725           85 IATMRARIDAQMNYEFNAA-KMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCY-LKTKQY  162 (591)
Q Consensus        85 ~~~a~~~~~~~l~~~~~~a-~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y-~~lg~y  162 (591)
                      ++.+..-+++.+...+... ..+...++...+.++++.|...|.+++...|....         .|.+.+... ...+++
T Consensus       115 ~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------~~~~~a~~e~~~~~~~  185 (308)
T d2onda1         115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH---------VYVTAALMEYYCSKDK  185 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------HHHHHHHHHHHTSCCH
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------HHHHHHHHHHHhccCH
Confidence            4455666666666565543 45778888899999999999999999999888765         566666653 345889


Q ss_pred             hhhhhhcceeeeccccchHHHHHhccchhhhhhHHHHhhhcccccccCCCCC----hHHHHHhHHHHHhhh
Q 007725          163 DECIKVGSEVLAYDAKNVKALYRRGQAYKDIGRLEEAVSDLSNAHEVSPDDG----TIADVLRDAKEILMK  229 (591)
Q Consensus       163 ~eAi~~~~~AL~ldP~~~~a~~~rg~al~~lg~~eeAl~~lekAl~l~P~~~----~a~~~L~~a~~~l~~  229 (591)
                      +.|...|+++++.+|+++..|...+..+...|+++.|...|++|+...|.++    .++......+...|+
T Consensus       186 ~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~  256 (308)
T d2onda1         186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999877554    356666555555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.58  E-value=0.0001  Score=70.04  Aligned_cols=106  Identities=18%  Similarity=0.128  Sum_probs=83.5

Q ss_pred             HHHHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----cccchhhhhhcceeeecccc
Q 007725          103 AKMLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAK  178 (591)
Q Consensus       103 a~~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----lg~y~eAi~~~~~AL~ldP~  178 (591)
                      ++++.++|..++.+++|.+|+++|+++.+.  ++..         +++++|.+|..    .+++..|+..+..+.  +..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~---------A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~--~~~   68 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENS---------GCFNLGVLYYQGQGVEKNLKKAASFYAKAC--DLN   68 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHH---------HHHHHHHHHHcCCCcchhHHHHHHhhcccc--ccc
Confidence            568999999999999999999999999875  3333         78899999987    668899999998876  456


Q ss_pred             chHHHHHhccchhh----hhhHHHHhhhcccccccCCCCChHHHHHhHH
Q 007725          179 NVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSPDDGTIADVLRDA  223 (591)
Q Consensus       179 ~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a  223 (591)
                      ++.+.+++|.++..    ..+++.|+..++++....+  ..+...+...
T Consensus        69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~  115 (265)
T d1ouva_          69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGI  115 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhccc
Confidence            88888888887754    4678889999999887644  3444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.96  E-value=0.00077  Score=57.77  Aligned_cols=91  Identities=11%  Similarity=-0.052  Sum_probs=67.2

Q ss_pred             HHHHhcccccccccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----cccchhhhhhcceeeeccccch
Q 007725          105 MLKKQGNELYSEGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAYDAKNV  180 (591)
Q Consensus       105 ~lk~~Gn~~~~~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----lg~y~eAi~~~~~AL~ldP~~~  180 (591)
                      ++..+|.  ....++++|+..|.++.+.  .++.         +++++|.+|..    ..++.+|++.|+++.+  ..++
T Consensus        27 a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~---------a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~--~g~~   91 (133)
T d1klxa_          27 GCLSLVS--NSQINKQKLFQYLSKACEL--NSGN---------GCRFLGDFYENGKYVKKDLRKAAQYYSKACG--LNDQ   91 (133)
T ss_dssp             HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCH
T ss_pred             hhhhhcc--ccccCHHHHHHHHhhhhcc--cchh---------hhhhHHHhhhhccccchhhHHHHHHHhhhhc--cCcc
Confidence            3444443  3456788999999998875  3332         56778888765    4578899999999874  4678


Q ss_pred             HHHHHhccchhh----hhhHHHHhhhcccccccC
Q 007725          181 KALYRRGQAYKD----IGRLEEAVSDLSNAHEVS  210 (591)
Q Consensus       181 ~a~~~rg~al~~----lg~~eeAl~~lekAl~l~  210 (591)
                      .+.+++|.+|..    ..++++|+.+|++|.++.
T Consensus        92 ~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          92 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            889999998876    457889999999887654

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.33  E-value=0.0021  Score=54.86  Aligned_cols=94  Identities=16%  Similarity=0.052  Sum_probs=72.8

Q ss_pred             cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeeccccchhhhhhcceeeeccccchHHHHHhccchhh---
Q 007725          116 EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLKTKQYDECIKVGSEVLAYDAKNVKALYRRGQAYKD---  192 (591)
Q Consensus       116 ~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~lg~y~eAi~~~~~AL~ldP~~~~a~~~rg~al~~---  192 (591)
                      ..++++|+.+|+++.+..  ++.         ++++++.  ....++++|+..|+++.+  .+++.+++++|..|..   
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~---------a~~~l~~--~~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~   70 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMF---------GCLSLVS--NSQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKY   70 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTT---------HHHHHHT--CTTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSS
T ss_pred             ccCHHHHHHHHHHHHHCC--Chh---------hhhhhcc--ccccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccc
Confidence            458999999999998863  322         4555654  345688999999999874  5789999999999875   


Q ss_pred             -hhhHHHHhhhcccccccCCCCChHHHHHhHHHHH
Q 007725          193 -IGRLEEAVSDLSNAHEVSPDDGTIADVLRDAKEI  226 (591)
Q Consensus       193 -lg~~eeAl~~lekAl~l~P~~~~a~~~L~~a~~~  226 (591)
                       ..++++|+.+|+++.+.  .++.+...|+.+...
T Consensus        71 ~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          71 VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence             46789999999999875  466777788776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=95.16  E-value=0.00035  Score=66.23  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=65.2

Q ss_pred             HHHHHhcccccc----cccchhHHHHHHHhhhccccccccccceeeeeeccccceeeec----cccchhhhhhcceeeec
Q 007725          104 KMLKKQGNELYS----EGRFSNALQKYLLAKKNLQGIHSSEGRTLLLACSLNSMSCYLK----TKQYDECIKVGSEVLAY  175 (591)
Q Consensus       104 ~~lk~~Gn~~~~----~g~y~eAi~~Y~kAL~l~p~~~~~e~~~l~~~~~~Nla~~y~~----lg~y~eAi~~~~~AL~l  175 (591)
                      ..+..+|..+..    ..+...+...|.++.+.  .++.         +++++|.+|..    .+++++|+..|.++.+.
T Consensus       143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~~---------A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~  211 (265)
T d1ouva_         143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSP---------GCFNAGNMYHHGEGATKNFKEALARYSKACEL  211 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH---------HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred             chhhhhhhhhccCCCcccccccchhhhhccccc--cccc---------cccchhhhcccCcccccchhhhhhhHhhhhcc
Confidence            344555555543    34455666666766653  2322         67788888876    56888888888888765


Q ss_pred             cccchHHHHHhccchhh----hhhHHHHhhhcccccccCC
Q 007725          176 DAKNVKALYRRGQAYKD----IGRLEEAVSDLSNAHEVSP  211 (591)
Q Consensus       176 dP~~~~a~~~rg~al~~----lg~~eeAl~~lekAl~l~P  211 (591)
                        +++.+++++|.+|..    .+++++|+.+|++|+.+..
T Consensus       212 --g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         212 --ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             --TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             --cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence              578888888888875    3478888888888876653