Citrus Sinensis ID: 007733

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-

MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENLG

cccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccEEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHcccccEEEEEEEEccEEEccccEEEEccccccHHHcccccccHHHHHHHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccEEEEcccccccccccccEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccHHcccccHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHcc

cccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEcHHHccHHHHHHHHHHHHHcccEEEEEccccccccccEEEEEEcccHHHHHHHHHHHHccccccccEEEEEEEccccHHHHHHHHHHcccEEEEEEEEEEEEEccccccEEEccccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEccccccccHHHHHHccccccccccccccHHHHHcccHHHHHHHHHHHHHccccccccHHHcccccccccccccccHccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccEEEEEEcEEcccHHHHHHHHHHcc

maqipnldnaplnlkSIREQSQRDLVNILKNirgkkclvidpklsgslslivptstlKEYGIELRllsaepvqtdcAKVVYFVGPQFISMRFIsshvhddaskglqreyflyFVPRRSVACEKILEEEKvhnlmtigeyplymvpldeDVLSFELDLAHkewqvdgdasSLWHIAKAIHKLeftfglipnvrakgKASVRVAEILNRmqteepvslsdmnipeintLVLIDREVDMVTPMCSQLTYEGLVDEFLRINngsveldasimgaqqqdgkkmkvplnssDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQhlstftskpsflgqldMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVtnsglpkkqFDYLRRELLHSYGFEHMATLNNLEkaglfkkqetKSNWQLVKRALQLVedtdtanpndisyvfsgyaplSIRLVQNAIRSGWRPMEEILkllpgphyetkrggfssspsfdmsqglsssidkrsLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENLG

maqipnldnaplnlksiREQSQRDLVNILKnirgkkclvidpklsgslslivpTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRmqteepvslsdmnipEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGaqqqdgkkmkvPLNSSDKLFKEIRDLNFEVVVQVLRQkatsmkqdytevttmsqtvsELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVtnsglpkkqFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIIsgnslaetfsenlg

MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKRSlvlvvfvggvtfAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENLG

***********************DLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQT***VSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDA**********************LFKEIRDLNFEVVVQVLRQKATS***DYTEVTT***TVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPG****************************RSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGN***********

***********LNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQ**************INTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVE********************NSSDKLFKEIRDLNFEVVVQVLRQKAT*****************************PEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEK***********************************YVFSGYAPLSIRLVQNAIRSGWRPMEEILKL**********************************VLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENL*

MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGA********KVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYE********************SIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLA********

****PNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEE*****DMNIPEINTLVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPH*************************KRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE***

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		591	2.2.26 [Sep-21-2011]
Q94KJ7		592	Vacuolar protein sorting-	yes	no	0.996	0.994	0.747	0.0
Q63615		597	Vacuolar protein sorting-	yes	no	0.957	0.948	0.376	1e-106
Q9D2N9		598	Vacuolar protein sorting-	yes	no	0.957	0.946	0.379	1e-106
Q96AX1		596	Vacuolar protein sorting-	yes	no	0.961	0.953	0.376	1e-105
Q58EN8		617	Vacuolar protein sorting-	no	no	0.959	0.918	0.328	5e-81
Q2HJ18		617	Vacuolar protein sorting-	no	no	0.956	0.915	0.318	6e-79
Q9Y1I2		617	Vacuolar protein sorting-	yes	no	0.949	0.909	0.319	8e-78
Q9H267		617	Vacuolar protein sorting-	no	no	0.957	0.917	0.310	2e-77
P59016		617	Vacuolar protein sorting-	no	no	0.962	0.922	0.317	3e-76
Q63616		617	Vacuolar protein sorting-	no	no	0.961	0.920	0.318	7e-76

>sp\|Q94KJ7\|VPS33_ARATH Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1	Back alignment and function desciption

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/594 (74%), Positives = 528/594 (88%), Gaps = 5/594 (0%)

Query: 1   MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEY 60
           MAQIP+L+NAPLNLKSIR++S+R+LVN+LK++RG KCLVIDPKLSGS+SLI+PTS LKE 
Sbjct: 1   MAQIPSLENAPLNLKSIRDKSERELVNLLKDVRGTKCLVIDPKLSGSVSLIIPTSKLKEL 60

Query: 61  GIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVA 120
           G+ELR L+AEPVQT+C KVVY V  Q   M+FI+SH+ +D +K +QR+Y++YFVPRRSVA
Sbjct: 61  GLELRHLTAEPVQTECTKVVYLVRSQLSFMKFIASHIQNDIAKAIQRDYYVYFVPRRSVA 120

Query: 121 CEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHK 180
           CEKILE+EKVHNL+T+ E+PLYMVPLDEDV+SFEL+L+ K+  VDGD SSLWHIAKAIH+
Sbjct: 121 CEKILEQEKVHNLVTVKEFPLYMVPLDEDVISFELELSEKDCLVDGDVSSLWHIAKAIHE 180

Query: 181 LEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPM 240
           LEF+FG+I  +RAKGKASVRVA+ILNRMQ EEPV+ +D+  PE++TL+L+DREVDMVTPM
Sbjct: 181 LEFSFGVISKMRAKGKASVRVADILNRMQVEEPVNSNDVGRPEVDTLILLDREVDMVTPM 240

Query: 241 CSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVV 300
           CSQLTYEGL+DE L I+NG+VE+D+S+MGAQQ+ GKKMKVPLNSSDKLFKE RDLNFEVV
Sbjct: 241 CSQLTYEGLIDEILHISNGAVEVDSSVMGAQQE-GKKMKVPLNSSDKLFKETRDLNFEVV 299

Query: 301 VQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSF 360
           VQVLRQKA +MK+DYTE+ + +QTVSELKDFVKKLNSLPEMTRHI+LAQHL+TFTSK SF
Sbjct: 300 VQVLRQKAMTMKEDYTEINS-TQTVSELKDFVKKLNSLPEMTRHIHLAQHLTTFTSKQSF 358

Query: 361 LGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRR 420
             QLDME T++EA++YDIC+EYIEEMIHKQEPL  VLRLL+LFSVTNSGLPKKQFDY+R 
Sbjct: 359 NSQLDMEQTLVEAENYDICYEYIEEMIHKQEPLTNVLRLLVLFSVTNSGLPKKQFDYIRM 418

Query: 421 ELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQL-VEDTDTANPNDISYVFSG 479
           ELLHSYGFEH+ TLNNLEKAGL KKQE KSNW  VKR L+L VEDTDT+ PNDI+YV+SG
Sbjct: 419 ELLHSYGFEHVVTLNNLEKAGLLKKQEFKSNWLTVKRTLKLIVEDTDTSRPNDIAYVYSG 478

Query: 480 YAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSI--DKR 537
           YAPLSIRL+Q AI SGWRPME+ILKLLPGPH ETKR GF SSPS D   G S+ +   +R
Sbjct: 479 YAPLSIRLIQQAIHSGWRPMEDILKLLPGPHLETKRSGFPSSPSVDSLHGASNGVADGRR 538

Query: 538 SLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENLG 591
           S+VLVVF+GGVTFAEISALR+L+++EGMAYD+IV TTKI++G +L ETF E LG
Sbjct: 539 SIVLVVFIGGVTFAEISALRYLASKEGMAYDLIVATTKIVNGATLIETFMEKLG 592

Involved in the vesicle trafficking. Binds syntaxins.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q63615\|VP33A_RAT Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1	Back alignment and function description

>sp\|Q9D2N9\|VP33A_MOUSE Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=1 SV=2	Back alignment and function description

>sp\|Q96AX1\|VP33A_HUMAN Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1	Back alignment and function description

>sp\|Q58EN8\|VP33B_DANRE Vacuolar protein sorting-associated protein 33B OS=Danio rerio GN=vps33b PE=2 SV=1	Back alignment and function description

>sp\|Q2HJ18\|VP33B_BOVIN Vacuolar protein sorting-associated protein 33B OS=Bos taurus GN=VPS33B PE=2 SV=1	Back alignment and function description

>sp\|Q9Y1I2\|VP33A_DROME Vacuolar protein sorting-associated protein 33A OS=Drosophila melanogaster GN=car PE=1 SV=1	Back alignment and function description

>sp\|Q9H267\|VP33B_HUMAN Vacuolar protein sorting-associated protein 33B OS=Homo sapiens GN=VPS33B PE=1 SV=2	Back alignment and function description

>sp\|P59016\|VP33B_MOUSE Vacuolar protein sorting-associated protein 33B OS=Mus musculus GN=Vps33b PE=1 SV=1	Back alignment and function description

>sp\|Q63616\|VP33B_RAT Vacuolar protein sorting-associated protein 33B OS=Rattus norvegicus GN=Vps33b PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		591
255557210		597	vacuolar protein sorting, putative [Rici	1.0	0.989	0.804	0.0
359486573		597	PREDICTED: vacuolar protein sorting-asso	1.0	0.989	0.824	0.0
224113087		596	predicted protein [Populus trichocarpa]	0.998	0.989	0.814	0.0
449449276		596	PREDICTED: vacuolar protein sorting-asso	0.998	0.989	0.790	0.0
356535607		596	PREDICTED: vacuolar protein sorting-asso	0.998	0.989	0.814	0.0
449449274		617	PREDICTED: vacuolar protein sorting-asso	0.998	0.956	0.762	0.0
224097796		605	predicted protein [Populus trichocarpa]	0.998	0.975	0.785	0.0
356535609		613	PREDICTED: vacuolar protein sorting-asso	0.998	0.962	0.791	0.0
297820238		592	ATVPS33 [Arabidopsis lyrata subsp. lyrat	0.996	0.994	0.752	0.0
18410149		592	vacuolar protein sorting-associated prot	0.996	0.994	0.747	0.0

>gi\|255557210\|ref\|XP_002519636.1\| vacuolar protein sorting, putative [Ricinus communis] gi\|223541226\|gb\|EEF42781.1\| vacuolar protein sorting, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/597 (80%), Positives = 549/597 (91%), Gaps = 6/597 (1%)

Query: 1   MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEY 60
           MAQIPNLDN+PLNL+S+REQSQ++LVNIL+NIRG KCLVIDPKLSGSLSLI+ TS L+E+
Sbjct: 1   MAQIPNLDNSPLNLRSLREQSQKELVNILRNIRGNKCLVIDPKLSGSLSLIIQTSILREH 60

Query: 61  GIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVA 120
           G ELR LSA+P+QTDC KVVY V  +F  MRFI SHVH+D SKGL+REY++YFVPRR V 
Sbjct: 61  GAELRHLSADPIQTDCTKVVYLVRSRFNLMRFICSHVHNDTSKGLEREYYIYFVPRREVV 120

Query: 121 CEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHK 180
           CEK+LEEEK+H+LMTIGEYPLYMVPLDEDVLSFELD+  K++QVDGD SSLWHIAKAIH+
Sbjct: 121 CEKVLEEEKIHHLMTIGEYPLYMVPLDEDVLSFELDVTSKKYQVDGDTSSLWHIAKAIHR 180

Query: 181 LEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPM 240
           LE +FG+IP+VRAKGKASVRVA+ILN MQTEEP++ SDM +PEINTL+L+DREVDMVTPM
Sbjct: 181 LESSFGVIPHVRAKGKASVRVADILNHMQTEEPINSSDMGVPEINTLILLDREVDMVTPM 240

Query: 241 CSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVV 300
           CSQLTYEGL+DEFL INNG+VELDAS+MGAQQQ+GKKMKVPLNSSDKLFKEIRDLNFEVV
Sbjct: 241 CSQLTYEGLLDEFLHINNGAVELDASVMGAQQQEGKKMKVPLNSSDKLFKEIRDLNFEVV 300

Query: 301 VQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSF 360
           VQVLRQKATSMKQDYTE+TT +QTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSF
Sbjct: 301 VQVLRQKATSMKQDYTEMTTTNQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSF 360

Query: 361 LGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRR 420
           L +LDMEHTI+EA++YD CFE+IEE+IHKQEPL  VLR+LIL SVTNSGLP+K FDY+RR
Sbjct: 361 LARLDMEHTIVEAENYDACFEHIEELIHKQEPLVTVLRMLILLSVTNSGLPRKNFDYIRR 420

Query: 421 ELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQL-VEDTDTANPNDISYVFSG 479
           ELLHSYGFEHMATLNNLEKAGL KKQE++SNW  +KRALQL VEDTDTANPNDI+YVFSG
Sbjct: 421 ELLHSYGFEHMATLNNLEKAGLLKKQESRSNWVTIKRALQLVVEDTDTANPNDIAYVFSG 480

Query: 480 YAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSID---- 535
           YAPLSIRLVQ+A+RSGWRPMEEILKLLPGPH ETKR GF+SSPS +   G  +++D    
Sbjct: 481 YAPLSIRLVQHAVRSGWRPMEEILKLLPGPHSETKRAGFTSSPSSNTLNGAGATVDRVAD 540

Query: 536 -KRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENLG 591
            +RSLVLVVF+GGVTFAEISALRFLSAQEGMAYD+I+GTT++++GN+LAET+ E+LG
Sbjct: 541 GRRSLVLVVFIGGVTFAEISALRFLSAQEGMAYDLIIGTTELVNGNTLAETYLEHLG 597

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359486573\|ref\|XP_002270458.2\| PREDICTED: vacuolar protein sorting-associated protein 33 homolog [Vitis vinifera] gi\|296085984\|emb\|CBI31425.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224113087\|ref\|XP_002316387.1\| predicted protein [Populus trichocarpa] gi\|222865427\|gb\|EEF02558.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449449276\|ref\|XP_004142391.1\| PREDICTED: vacuolar protein sorting-associated protein 33 homolog isoform 2 [Cucumis sativus] gi\|449487248\|ref\|XP_004157536.1\| PREDICTED: vacuolar protein sorting-associated protein 33 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356535607\|ref\|XP_003536336.1\| PREDICTED: vacuolar protein sorting-associated protein 33 homolog isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|449449274\|ref\|XP_004142390.1\| PREDICTED: vacuolar protein sorting-associated protein 33 homolog isoform 1 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224097796\|ref\|XP_002311075.1\| predicted protein [Populus trichocarpa] gi\|222850895\|gb\|EEE88442.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356535609\|ref\|XP_003536337.1\| PREDICTED: vacuolar protein sorting-associated protein 33 homolog isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|297820238\|ref\|XP_002878002.1\| ATVPS33 [Arabidopsis lyrata subsp. lyrata] gi\|297323840\|gb\|EFH54261.1\| ATVPS33 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|18410149|ref|NP_567009.1| vacuolar protein sorting-associated protein 33-like protein [Arabidopsis thaliana] gi|28201911|sp|Q94KJ7.1|VPS33_ARATH RecName: Full=Vacuolar protein sorting-associated protein 33 homolog; Short=AtVPS33 gi|13898891|gb|AAK48903.1|AF357527_1 VPS33 [Arabidopsis thaliana] gi|332645780|gb|AEE79301.1| vacuolar protein sorting-associated protein 33-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		591
TAIR\|locus:2082692		608	ATVPS33 [Arabidopsis thaliana	0.900	0.875	0.733	1.9e-216
DICTYBASE\|DDB_G0291097		644	vps33 "Sec1-like family protei	0.461	0.423	0.427	2e-115
UNIPROTKB\|E1BVA6		601	VPS33A "Uncharacterized protei	0.969	0.953	0.365	3.7e-96
ZFIN\|ZDB-GENE-040914-82		599	vps33a "vacuolar protein sorti	0.957	0.944	0.374	1.2e-95
MGI\|MGI:1924823		598	Vps33a "vacuolar protein sorti	0.967	0.956	0.371	2.3e-94
RGD\|620643		597	Vps33a "vacuolar protein sorti	0.971	0.961	0.368	7.8e-94
UNIPROTKB\|A5A780		596	VPS33A "Vacuolar protein sorti	0.967	0.959	0.367	1.6e-93
UNIPROTKB\|F1MT37		596	VPS33A "Uncharacterized protei	0.967	0.959	0.367	4.3e-93
UNIPROTKB\|E2R7K6		597	VPS33A "Uncharacterized protei	0.969	0.959	0.364	7e-93
UNIPROTKB\|Q96AX1		596	VPS33A "Vacuolar protein sorti	0.967	0.959	0.367	9e-93

TAIR\|locus:2082692 ATVPS33 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2091 (741.1 bits), Expect = 1.9e-216, P = 1.9e-216
 Identities = 404/551 (73%), Positives = 477/551 (86%)

Query:     1 MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEY 60
             MAQIP+L+NAPLNLKSIR++S+R+LVN+LK++RG KCLVIDPKLSGS+SLI+PTS LKE 
Sbjct:     1 MAQIPSLENAPLNLKSIRDKSERELVNLLKDVRGTKCLVIDPKLSGSVSLIIPTSKLKEL 60

Query:    61 GIELRLLSAEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVA 120
             G+ELR L+AEPVQT+C KVVY V  Q   M+FI+SH+ +D +K +QR+Y++YFVPRRSVA
Sbjct:    61 GLELRHLTAEPVQTECTKVVYLVRSQLSFMKFIASHIQNDIAKAIQRDYYVYFVPRRSVA 120

Query:   121 CEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLWHIAKAIHK 180
             CEKILE+EKVHNL+T+ E+PLYMVPLDEDV+SFEL+L+ K+  VDGD SSLWHIAKAIH+
Sbjct:   121 CEKILEQEKVHNLVTVKEFPLYMVPLDEDVISFELELSEKDCLVDGDVSSLWHIAKAIHE 180

Query:   181 LEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPM 240
             LEF+FG+I  +RAKGKASVRVA+ILNRMQ EEPV+ +D+  PE++TL+L+DREVDMVTPM
Sbjct:   181 LEFSFGVISKMRAKGKASVRVADILNRMQVEEPVNSNDVGRPEVDTLILLDREVDMVTPM 240

Query:   241 CSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSS--------------- 285
             CSQLTYEGL+DE L I+NG+VE+D+S+MGAQQ+ GKKMKVPLNSS               
Sbjct:   241 CSQLTYEGLIDEILHISNGAVEVDSSVMGAQQE-GKKMKVPLNSSKYDAWNIYFDFRGLD 299

Query:   286 -DKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQTVSELKDFVKKLNSLPEMTRH 344
              DKLFKE RDLNFEVVVQVLRQKA +MK+DYTE+ + +QTVSELKDFVKKLNSLPEMTRH
Sbjct:   300 NDKLFKETRDLNFEVVVQVLRQKAMTMKEDYTEINS-TQTVSELKDFVKKLNSLPEMTRH 358

Query:   345 INLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFS 404
             I+LAQHL+TFTSK SF  QLDME T++EA++YDIC+EYIEEMIHKQEPL  VLRLL+LFS
Sbjct:   359 IHLAQHLTTFTSKQSFNSQLDMEQTLVEAENYDICYEYIEEMIHKQEPLTNVLRLLVLFS 418

Query:   405 VTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQL-VE 463
             VTNSGLPKKQFDY+R ELLHSYGFEH+ TLNNLEKAGL KKQE KSNW  VKR L+L VE
Sbjct:   419 VTNSGLPKKQFDYIRMELLHSYGFEHVVTLNNLEKAGLLKKQEFKSNWLTVKRTLKLIVE 478

Query:   464 DTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPS 523
             DTDT+ PNDI+YV+SGYAPLSIRL+Q AI SGWRPME+ILKLLPGPH ETKR GF SSPS
Sbjct:   479 DTDTSRPNDIAYVYSGYAPLSIRLIQQAIHSGWRPMEDILKLLPGPHLETKRSGFPSSPS 538

Query:   524 FDMSQGLSSSI 534
              D   G S+ +
Sbjct:   539 VDSLHGASNGV 549

GO:0006904 "vesicle docking involved in exocytosis" evidence=IEA

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0007033 "vacuole organization" evidence=RCA;TAS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE\|DDB_G0291097 vps33 "Sec1-like family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BVA6 VPS33A "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040914-82 vps33a "vacuolar protein sorting 33A" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1924823 Vps33a "vacuolar protein sorting 33A (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|620643 Vps33a "vacuolar protein sorting 33 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A5A780 VPS33A "Vacuolar protein sorting 33A homolog" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MT37 VPS33A "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R7K6 VPS33A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96AX1 VPS33A "Vacuolar protein sorting-associated protein 33A" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96AX1	VP33A_HUMAN	No assigned EC number	0.3768	0.9610	0.9530	yes	no
Q63615	VP33A_RAT	No assigned EC number	0.3766	0.9576	0.9480	yes	no
Q9Y1I2	VP33A_DROME	No assigned EC number	0.3192	0.9492	0.9092	yes	no
Q94KJ7	VPS33_ARATH	No assigned EC number	0.7474	0.9966	0.9949	yes	no
Q9D2N9	VP33A_MOUSE	No assigned EC number	0.3793	0.9576	0.9464	yes	no
Q9P7V6	VPS33_SCHPO	No assigned EC number	0.3051	0.9373	0.9358	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00080299	hypothetical protein (605 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		591
pfam00995		554	pfam00995, Sec1, Sec1 family	1e-104
COG5158		582	COG5158, SEC1, Proteins involved in synaptic trans	4e-46

>gnl\|CDD\|216231 pfam00995, Sec1, Sec1 family	Back alignment and domain information

 Score =  324 bits (833), Expect = e-104
 Identities = 154/577 (26%), Positives = 270/577 (46%), Gaps = 48/577 (8%)

Query: 35  KKCLVIDPKLSGSLSLIVPTSTLKEYGIEL--RLLSAEPVQTDCAKVVYFVGPQFISMRF 92
            K LV+D + +  LS ++  S L E+G+ L   + +      D    +YF+ P   ++  
Sbjct: 1   WKVLVLDKETTKILSSVLTVSDLLEHGVTLVENIENKREPLPDL-PAIYFIRPTEENVDR 59

Query: 93  ISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVL 151
           I     DD      + Y ++F    S +  + L E  V  L+  + E  L  +PL+ D+ 
Sbjct: 60  II----DDLKNPKYKSYHIFFTNSLSRSLLERLAEADVAELVKQVKEIYLDFIPLESDLF 115

Query: 152 SFELDLAHKE-WQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKG-KASVRVAEILNRM- 208
           S EL  + ++ +  DGD S L  IA+ +  L  T G IP +R +G  A+ R+AE L ++ 
Sbjct: 116 SLELPNSFRDLYSPDGDESDLERIAEGLFSLLLTLGEIPIIRYQGNSAAERLAEKLAQLL 175

Query: 209 -QTEEPVSLSDMNIPEINT---LVLIDREVDMVTPMCSQLTYEGLVDEFLRINNGSVELD 264
            +  +     + + P       L+++DR +D++TP+  Q TY+ +V + L I N  V LD
Sbjct: 176 QENLDLFDADNPSTPPSKPRPVLLILDRSIDLITPLLHQWTYQAMVHDLLGIKNNRVTLD 235

Query: 265 ASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVTTMSQT 324
               G    + KK +V L+ +D  + E R L+F  V + ++++    K++        ++
Sbjct: 236 TPGNG---GESKK-EVVLDENDPFWVENRHLHFPDVAEKIKKELKEYKEENKNSNKKKKS 291

Query: 325 VSELKDFVKKLNSLPEM-------TRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYD 377
           +S+LK+FV+K   LPE        + H+NLA+ L     +       ++E  +      D
Sbjct: 292 ISDLKEFVEK---LPEFQKEKGKLSLHLNLAEELMKQIKERKLDKVSELEQDLATGSDAD 348

Query: 378 ICFEYIEEMI-HKQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHS-YGFEHMATLN 435
              + I E++ + + PL   LRLL+L+S+ + G   K  + LR+ LLH+  G E +  + 
Sbjct: 349 KQKKDILELLNNPKVPLEDKLRLLLLYSLRD-GGKGKDLEDLRKLLLHAGIGPEALNLVK 407

Query: 436 NLEKAGLFKKQETKSNWQLVKRALQ-LVEDTDTANPNDISYVFSGYAPLSIRLVQNAI-- 492
           NLE+ G    + + SN+  ++  L+ LV++   + P  +  V S Y PL  R++++ I  
Sbjct: 408 NLEQLGGLLSRTSGSNFSDLRDKLKLLVKEVSKSLPKGVKNVLSRYKPLLKRILEDLIKG 467

Query: 493 ---RSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKRSLVLVVFVGGVT 549
                 +   +  L    GP    +                         ++V  VGGVT
Sbjct: 468 KLDTDSYPYFDPKLANASGPQGSLRSKR---------PTAAGQGRQPPQRIIVFVVGGVT 518

Query: 550 FAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF 586
           ++E  AL  LS +      VI+G+T I++  S  E  
Sbjct: 519 YSEARALYELSKKTN-GKRVIIGSTSILNPESFLEEL 554

Length = 554

>gnl\|CDD\|227487 COG5158, SEC1, Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		591
KOG1302		600	consensus Vacuolar sorting protein VPS33/slp1 (Sec	100.0
PF00995		564	Sec1: Sec1 family; InterPro: IPR001619 Sec1-like m	100.0
KOG1300		593	consensus Vesicle trafficking protein Sec1 [Intrac	100.0
KOG1299		549	consensus Vacuolar sorting protein VPS45/Stt10 (Se	100.0
COG5158		582	SEC1 Proteins involved in synaptic transmission an	100.0
KOG1301		621	consensus Vesicle trafficking protein Sly1 (Sec1 f	100.0

>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.5e-102  Score=806.71  Aligned_cols=576  Identities=43%  Similarity=0.694  Sum_probs=518.8

Q ss_pred             CCCCCCCCCCCCChHHHHHHHHHHHHHHhhcCCCceEEEEcCCCccccccccCchhHHhcCce-eEEccCCCCC-CCCce
Q 007733            1 MAQIPNLDNAPLNLKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLSAEPVQ-TDCAK   78 (591)
Q Consensus         1 ~~~~~~~~~~~~~l~~l~~~~~~~l~~~l~~~~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~~~~~~-~~~~~   78 (591)
                      |++++.-.+...++..+|+.++++|+++|+++||.|.||+|+.++++|+++.+++.|+++||. +..++.++.+ .++.+
T Consensus         1 m~~~~~d~~~~~~l~~lq~~a~~eL~~lLds~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~   80 (600)
T KOG1302|consen    1 MAPHLSDLGADLNLQGLQEVARRELISLLDSLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQ   80 (600)
T ss_pred             CCCCcccccccchHHHHHHHHHHHHHHHHhcCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCe
Confidence            777777667789999999999999999999999999999999999999999999999999999 8888876633 34678


Q ss_pred             EEEEECCChHHHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceeeEEEEcccceecCCCeEEeecccc
Q 007733           79 VVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIGEYPLYMVPLDEDVLSFELDLA  158 (591)
Q Consensus        79 ~Iy~i~pt~~~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~v~e~~~df~pld~~lfsl~~~~~  158 (591)
                      .|||+||+.++++.|++++++.......+.|||+|.|+.+..|...|+++|+++.+.+.|++++++|+|.|++||+.|++
T Consensus        81 ~vy~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~~P~~~~~c~~~Lee~gv~~~v~~~e~~~~~lpld~DllSlEl~~~  160 (600)
T KOG1302|consen   81 VVYFVRPRLENMQLIAEHVENVQRDGFTRDYHVIFVPRRSSLCETLLEEEGVYGLVLVEEQILDLLPLDGDLLSLELPNS  160 (600)
T ss_pred             EEEEEcCchHHHHHHHHHHhhhhhchhcceeEEEEeccHHHHHHHHHHhcccccccccchhhhhhccccccchhccchHH
Confidence            99999999999999999999865555678999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCchHHHHHHHHHHHHHHcCCCCeEEEeCCchHHHHHHHHHhhhccCCCCCCCCCCCcceEEEEecCCCCcc
Q 007733          159 HKEWQVDGDASSLWHIAKAIHKLEFTFGLIPNVRAKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVT  238 (591)
Q Consensus       159 ~~~~~~~~d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~~a~~va~~l~~l~~~~~~~~~~~~~~~~~~LiIlDR~~D~~T  238 (591)
                      |.++|+++|.+.+..+|+++.+++.++|.||.|++.|+.|+++++++.++..+.....++. .+.+++||++||++|++|
T Consensus       161 ~~d~~~~gd~s~l~~va~~l~~LQ~~~G~ip~v~g~G~~ak~~~~l~~~l~~e~~t~n~~~-~~~~~~liLlDR~~D~vt  239 (600)
T KOG1302|consen  161 FLDLYLDGDQSSLYHVADALVSLQRLYGIIPKVYGKGECAKRVWELLKKLEREEATENNGD-RPEIDHLILLDRDVDPVT  239 (600)
T ss_pred             HHHHhhccccchhHHHHHHHHHHHHhhCCCcceeeccHHHHHHHHHHHHHhhccccccCCC-ccccceEEEEeccCcccc
Confidence            9999999999999999999999999999999999999999999999998887665433322 467889999999999999


Q ss_pred             cccchhhhhHHhhhhhcccCCeEEeCcccccccc-CC-----CCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHH
Q 007733          239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQ-QD-----GKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMK  312 (591)
Q Consensus       239 Pll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~-~~-----~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~  312 (591)
                      ||+||.||+|++||+|||++|.|+++++.....+ .+     ...+.+.++..|++|+++|++||+.|++.+++++++++
T Consensus       240 pLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~lsk~ak~l~  319 (600)
T KOG1302|consen  240 PLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPLLSKKAKELQ  319 (600)
T ss_pred             hhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999886643221 00     12355666678999999999999999999999999999


Q ss_pred             HHHHhhccccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCcchHHHHHHHHHh
Q 007733          313 QDYTEVTTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSYDICFEYIEEMIH  388 (591)
Q Consensus       313 ~~~~~~~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~~~~~~~i~~li~  388 (591)
                      .+++.+++. ++++||++||++||++++    ++.|+++|+.+++.+++..|.+.+++||+++.|.|.++..++|+++|.
T Consensus       320 ~~~~~r~~~-~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~~~~IeElI~  398 (600)
T KOG1302|consen  320 AQYETRRQA-MSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKDFDYIEELIY  398 (600)
T ss_pred             HHHHhhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccchHHHHHHHh
Confidence            999988887 899999999999999976    999999999999999999999999999999999999888999999999


Q ss_pred             cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhchhHHHHHHHHHhcCCcccccCCc---------ChHHHHhhc
Q 007733          389 KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKS---------NWQLVKRAL  459 (591)
Q Consensus       389 ~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~l~~l~~~gl~~~~~~~~---------~~~~~~k~l  459 (591)
                      ...+...+|||+||.|++.+|+++++++.++++++|.||++++.+|.||+++|+++.+..+.         .|+.+++.+
T Consensus       399 ~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~ehl~tl~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl  478 (600)
T KOG1302|consen  399 QEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGYEHLLTLQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTL  478 (600)
T ss_pred             hcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998876543         799999999


Q ss_pred             Ccc-cccCCCCCCCccccccCccccHHHHHHHHHHc-CCCchHHHhhcCCCCccccccCCCCCCCCCCCCCCCCCCCCCC
Q 007733          460 QLV-EDTDTANPNDISYVFSGYAPLSIRLVQNAIRS-GWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKR  537 (591)
Q Consensus       460 ~l~-~~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  537 (591)
                      ++. ++.++.+|+|++|+||||+|+++||+|.+++. +|.+..+....+||++|+.......+..+.+.      ++...
T Consensus       479 ~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~------~~g~~  552 (600)
T KOG1302|consen  479 PLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNN------SPGAL  552 (600)
T ss_pred             CCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhccccc------CCCCc
Confidence            999 77888999999999999999999999999998 78887778889999999765543222211110      11237


Q ss_pred             cEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhh
Q 007733          538 SLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETF  586 (591)
Q Consensus       538 ~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l  586 (591)
                      +.++|||+||+||+||||+|++++..  +++|+|+||+++||.++|+.+
T Consensus       553 R~~lVff~GG~T~~EIAalr~l~~~~--~~~f~i~Tt~ling~~ll~~~  599 (600)
T KOG1302|consen  553 RVTLVFFLGGCTYAEIAALRFLAKLE--GYRFLIATTGLINGSSLLEAI  599 (600)
T ss_pred             ceEEEEEECCccHHHHHHHHHHHhhc--CceEEEEeccccchHHHHHhh
Confidence            89999999999999999999999997  799999999999999999976

>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []	Back alignment and domain information

>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		591
2xhe_A		650	Crystal Structure Of The Unc18-Syntaxin 1 Complex F		6e-06

>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From Monosiga Brevicollis Length = 650

Back alignment and structure

Iteration: 1

Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 71/337 (21%), Positives = 144/337 (42%), Gaps = 35/337 (10%) Query: 80 VYFVGPQFISMRFISSHVHD--DASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMTIG 137 VYF+ P ++ ++ + D D + + + + P K+ + V + T+ Sbjct: 71 VYFIEPTEENLDYV---IRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLK 127 Query: 138 EYPLYMVPLDEDVLSFELDLAHKEWQVDGDASSLW---HIAKAIHKLEFTFGLIPNVRAK 194 E +P + V F L+ H Q G SS + H+ + + L T + P VR Sbjct: 128 EINTLFIPKEHRV--FTLNEPHGLVQYYGSRSSSYNIDHLVRRLSTLCTTMNVAPIVRYS 185 Query: 195 GKASVRVAEILNRMQTEEPVSLSD--MNIPE---INTLVLIDREVDMVTPMCSQLTYEGL 249 ++ + ++Q E +S+S +N E + +++DR VD+ +P+ +LTY+ Sbjct: 186 STSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAA 245 Query: 250 VDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKAT 309 + L I N G ++Q + +V L D ++ ++R L+ + +V R+ Sbjct: 246 AYDLLNIENDIYSYSTVDAGGREQ---QRQVVLGEDDDIWLQMRHLH---ISEVFRK--- 296 Query: 310 SMKQDYTEVTTMSQTVSELKDFVK---KLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDM 366 +K + E ++ + L+D + +L +M + +L QH + LDM Sbjct: 297 -VKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLK--DLPQHREQMQ---KYSLHLDM 350 Query: 367 EHTIIEA--QSYDICFEYIEEMIHKQEPLNKVLRLLI 401 + I A + D C + + ++ ++E +R I Sbjct: 351 SNAINMAFSSTIDSCTKAEQNIVTEEEQDGNKVRDFI 387

PyMOL of 2xhe

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		591
1epu_A		591	S-SEC1; parallel beta-sheets, LEFT-hand turn conne	5e-90
1dn1_A		594	NSEC1, syntaxin binding protein 1; protein-protein	1e-87
3puk_A		592	Syntaxin-binding protein 3; membrane trafficking,	4e-83
2xhe_A		650	UNC18; exocytosis, exocytosis complex, snare, neur	4e-82
1mqs_A		671	SLY1 protein, SLY1P; SM-protein, snare, syntaxin,	1e-70
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10

>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A Length = 591	Back alignment and structure

 Score =  289 bits (739), Expect = 5e-90
 Identities = 89/598 (14%), Positives = 221/598 (36%), Gaps = 37/598 (6%)

Query: 14  LKSIREQSQRDLVNILKNIRGKKCLVIDPKLSGSLSLIVPTSTLKEYGIEL-RLLSAEPV 72
             ++ E+   D+V  +K     K L++D      +S       +   GI L   ++    
Sbjct: 4   KTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRRE 63

Query: 73  QTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVAC-EKILEEEKVH 131
                + VY + P   S++ + +   +       R   ++F         +++ +     
Sbjct: 64  PLPLLEAVYLITPTEESVKCLMADFQN-PDNPQYRGAHIFFTEACPEELFKELCKSTTAR 122

Query: 132 NLMTIGEYPLYMVPLDEDVLSFELDLA----HKEWQVDGDASSLWHIAKAIHKLEFTFGL 187
            + T+ E  +  +P +  + S +        +   +  G   +    A+ I  L  T G 
Sbjct: 123 FIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGE 182

Query: 188 IPNVR------AKGKASVRVAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMVTPMC 241
            P+VR           +  V + L+  + ++P ++ +    + + L+++DR  D ++P+ 
Sbjct: 183 YPSVRYRSDFDENASFAQLVQQKLDAYRADDP-TMGEGPQKDRSQLLILDRGFDPISPLL 241

Query: 242 SQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVV 301
            +LT++ +  + L I N   +     +     +  + +V L+  D L+ E+R  +  VV 
Sbjct: 242 HELTFQAMAYDLLPIENDVYKY----VNTGGNEVPEKEVLLDEKDDLWVEMRHQHIAVVS 297

Query: 302 QVLRQKATSMKQDYTEVTTM-SQTVSELKDFVKKLNSLPEM----TRHINLAQHLSTFTS 356
           Q + +K      +    T      + +L   +KK+    +     + H++LA+       
Sbjct: 298 QNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQY- 356

Query: 357 KPSFLGQLDMEHTIIEAQSYD------ICFEYIEEMIHKQEPLNKVLRLLILFSVTNSGL 410
           +        +E  +      D           +  ++ ++      +R+++L+ +   G+
Sbjct: 357 QQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGI 416

Query: 411 PKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTANP 470
            ++    L +        E    +N+++  G+   Q+                       
Sbjct: 417 SEENLAKLVQHAHIPA--EEKWIINDMQNLGVPIIQDGGRRKIPQP----YHTHNRKERQ 470

Query: 471 NDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGL 530
            D +Y  S + P    +++ A+               GP    ++        +   +G 
Sbjct: 471 ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQ 530

Query: 531 SSSIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 588
           +S       +++  VGG++++E+ +   ++      ++VI+G+T I++   L     +
Sbjct: 531 ASY-KSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLRK 587

PyMOL of 1epu

>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: e.25.1.1 PDB: 3puj_A 3c98_A Length = 594	Back alignment and structure

>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A Length = 592	Back alignment and structure

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 650	Back alignment and structure

>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1 Length = 671	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		591
2xhe_A		650	UNC18; exocytosis, exocytosis complex, snare, neur	100.0
1epu_A		591	S-SEC1; parallel beta-sheets, LEFT-hand turn conne	100.0
3puk_A		592	Syntaxin-binding protein 3; membrane trafficking,	100.0
1dn1_A		594	NSEC1, syntaxin binding protein 1; protein-protein	100.0
3c98_A		606	Syntaxin-binding protein 1; protein complex, alter	100.0
1mqs_A		671	SLY1 protein, SLY1P; SM-protein, snare, syntaxin,	100.0
1y9j_A		159	SEC1 family domain containing protein 1; membrane	99.9

>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}	Back alignment and structure

Probab=100.00  E-value=8.8e-96  Score=817.63  Aligned_cols=543  Identities=17%  Similarity=0.244  Sum_probs=445.2

Q ss_pred             HHHHHHHHHHH-HHhhcC---CCceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChH
Q 007733           16 SIREQSQRDLV-NILKNI---RGKKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI   88 (591)
Q Consensus        16 ~l~~~~~~~l~-~~l~~~---~g~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~   88 (591)
                      +||+.+|++|+ ++| ++   +|||+||+|+.++++||++|++++|+++||+ ++.|+  |+|+|.  .+|||||+|+.+
T Consensus         3 ~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~--~~aIyfv~Pt~~   79 (650)
T 2xhe_A            3 SLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ--FHGVYFIEPTEE   79 (650)
T ss_dssp             CHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTT--SEEEEEECSCHH
T ss_pred             cHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCC--CCEEEEEcCCHH
Confidence            48999999999 999 88   7999999999999999999999999999999 89997  578864  789999999999


Q ss_pred             HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeecccccccccc-cC
Q 007733           89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQV-DG  166 (591)
Q Consensus        89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~-~~  166 (591)
                      |+++|++|+++..  ++|++|||||+|.++....+.|++.++.+.|. |.|+++||+|+|+|+|||++|++|..+|. ++
T Consensus        80 ni~~i~~d~~~~~--~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~  157 (650)
T 2xhe_A           80 NLDYVIRDFADRT--PTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS  157 (650)
T ss_dssp             HHHHHHHHHHSSS--CSBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred             HHHHHHHHHhhcC--CCcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence            9999999998731  49999999999999888888888889888885 99999999999999999999999999984 67


Q ss_pred             CCchHHHHHHHHHHHHHHcCCCCeEEEeCC---chHHHHHHHH-Hhhh-ccCCCCC-CCCCCCcceEEEEecCCCCcccc
Q 007733          167 DASSLWHIAKAIHKLEFTFGLIPNVRAKGK---ASVRVAEILN-RMQT-EEPVSLS-DMNIPEINTLVLIDREVDMVTPM  240 (591)
Q Consensus       167 d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~---~a~~va~~l~-~l~~-~~~~~~~-~~~~~~~~~LiIlDR~~D~~TPl  240 (591)
                      +.+.++.+|++|+++|.++|.+|.|||+|+   .|++||++++ ++.. ... ... ..+...+++|||+||++|++|||
T Consensus       158 ~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~-~~~~~~~~~~~~~LiIlDR~~D~vTPL  236 (650)
T 2xhe_A          158 SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQ-GLINAREGKLKSQFLILDRAVDLKSPL  236 (650)
T ss_dssp             GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTT-TSCCCCCCSSCCEEEEECGGGCSSTTT
T ss_pred             chHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccC-CcccCCCCCCCCEEEEEcCCcchhhhc
Confidence            788999999999999999999999999986   5999999998 5654 111 111 11245688999999999999999


Q ss_pred             cchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhhc-
Q 007733          241 CSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEVT-  319 (591)
Q Consensus       241 l~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~~-  319 (591)
                      +||||||||+||+|||++|+|+++....++   +.+++++.||++|+||.++||+||++|++.|+++++++++++++.+ 
T Consensus       237 lhq~TYqaLi~dll~I~~n~v~~~~~~~~~---~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~  313 (650)
T 2xhe_A          237 VHELTYQAAAYDLLNIENDIYSYSTVDAGG---REQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQG  313 (650)
T ss_dssp             SCCCBHHHHHHHHSCCBTTEEEEEECCSSC---CSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccchHHHHHHHHhcCcCCEEEEEecCCCC---CccceEEeCCCCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999999999999999999998643211   1245789999999999999999999999999999999999988765 


Q ss_pred             ------cccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCc-----chHHHHHH
Q 007733          320 ------TMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSY-----DICFEYIE  384 (591)
Q Consensus       320 ------~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~-----~~~~~~i~  384 (591)
                            +. .++++|++||++||++++    +++|++||++|++.+++ +|++++++||++++|.|.     +..++.|+
T Consensus       314 ~~~~~~~~-~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~  391 (650)
T 2xhe_A          314 LRDSQQGE-GGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQDGNKVRDFIGEVA  391 (650)
T ss_dssp             CCCCCCST-TTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCSSCCBCCCHHHHHH
T ss_pred             cccccccc-ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence                  23 689999999999999986    99999999999999999 999999999999999875     45688999


Q ss_pred             HHHh-cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhch--hHHHHHHHHHhcCCcccccC--CcChHHHHhhc
Q 007733          385 EMIH-KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGF--EHMATLNNLEKAGLFKKQET--KSNWQLVKRAL  459 (591)
Q Consensus       385 ~li~-~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~--~~~~~l~~l~~~gl~~~~~~--~~~~~~~~k~l  459 (591)
                      ++|. .+.+..|||||+|||+++++|+++++++.    +++.||+  +++.++.||+++|+...+..  +..|..     
T Consensus       392 ~ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~~----ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~~~~~~~-----  462 (650)
T 2xhe_A          392 SVVVDRRVSTEDKLRCLMLCVLAKNGTSSHELNN----LLDNANIATPSRSAIYNLEMLGATVVADRRGRKPKTM-----  462 (650)
T ss_dssp             HHHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHHH----HHHHTTCCGGGGHHHHGGGGGTCCCBGGGCCCCCCCC-----
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHcCCCHHHHHHHHHHHHhCCcccccccccccccc-----
Confidence            9887 77899999999999999999999988854    6889999  89999999999999865431  111211     


Q ss_pred             CcccccCCCCCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccc---------c-ccCCCCCCCCCC--CC
Q 007733          460 QLVEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYE---------T-KRGGFSSSPSFD--MS  527 (591)
Q Consensus       460 ~l~~~~~~~~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~---------~-~~~~~~~~~s~~--~~  527 (591)
                         ..    ...+.+|+|+||+|+++|+||.++++.++. +.+ ..+.++.-.         . ......++.+.+  .|
T Consensus       463 ---~r----k~~~~~yv~s~y~Pl~~rlve~l~~~~l~~-~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w  533 (650)
T 2xhe_A          463 ---KR----IERDMPYVLSRWTPIVKDLMEYIATGQLDL-ESY-PAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNW  533 (650)
T ss_dssp             ---CC----CCCCCCSTTCCCCCHHHHHHHHHTTTCSCT-TTS-CBSSCGGGSCCCC-----------------------
T ss_pred             ---cc----cccCCcceeccchHHHHHHHHHHhcCCCCc-ccC-ceeCCCCccccccccccccccccccccccccccccc
Confidence               00    012338999999999999999999975332 111 111110000         0 000000000000  01


Q ss_pred             CCCC------------------C----CCCCCcEEEEEEEcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHh
Q 007733          528 QGLS------------------S----SIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET  585 (591)
Q Consensus       528 ~~~~------------------~----~~~~~~~viVfviGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~  585 (591)
                      .+.+                  .    ...+++++|||||||+||+|+|++|+++++.  +++||||||+|+||++||++
T Consensus       534 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~--~~~viigsT~Iln~~~fl~~  611 (650)
T 2xhe_A          534 AKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSS--GYEVYIGAHNIATPAEFVEL  611 (650)
T ss_dssp             ----------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTS--SSEEEEEEEEECCHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcC--CCEEEEeeCCcCCHHHHHHH
Confidence            1100                  0    0123688999999999999999999999774  89999999999999999999


Q ss_pred             hhhh
Q 007733          586 FSEN  589 (591)
Q Consensus       586 l~~~  589 (591)
                      +...
T Consensus       612 l~~l  615 (650)
T 2xhe_A          612 VSLL  615 (650)
T ss_dssp             HHTT
T ss_pred             HHHc
Confidence            9754

PyMOL of 2xhe

>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A	Back alignment and structure

>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A	Back alignment and structure

>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A	Back alignment and structure

>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A	Back alignment and structure

>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1	Back alignment and structure

>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		591
d1epua_		590	e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshor	2e-96
d1dn1a_		589	e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus no	1e-94
d1mqsa_		653	e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccha	2e-71

>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]} Length = 590	Back information, alignment and structure


class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Longfin inshore squid (Loligo pealei) [TaxId: 6621]

 Score =  304 bits (779), Expect = 2e-96
 Identities = 93/601 (15%), Positives = 226/601 (37%), Gaps = 43/601 (7%)

Query: 16  SIREQSQRDLVN-ILKNIRGK---KCLVIDPKLSGSLSLIVPTSTLKEYGIELRLL---S 68
           +++      ++N ++  ++     K L++D      +S       +   GI L       
Sbjct: 1   ALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRR 60

Query: 69  AEPVQTDCAKVVYFVGPQFISMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEE 128
            EP+     + VY + P   S++ + +   +       R   ++F         K L + 
Sbjct: 61  REPLPL--LEAVYLITPTEESVKCLMADFQN-PDNPQYRGAHIFFTEACPEELFKELCKS 117

Query: 129 KVHN-LMTIGEYPLYMVPLDEDVLSFELDLAHKEW----QVDGDASSLWHIAKAIHKLEF 183
                + T+ E  +  +P +  + S +     + +    +  G   +    A+ I  L  
Sbjct: 118 TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCA 177

Query: 184 TFGLIPNVRAKGKASVR------VAEILNRMQTEEPVSLSDMNIPEINTLVLIDREVDMV 237
           T G  P+VR +            V + L+  + ++P ++ +    + + L+++DR  D +
Sbjct: 178 TLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDP-TMGEGPQKDRSQLLILDRGFDPI 236

Query: 238 TPMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNF 297
           +P+  +LT++ +  + L I N   +   +       +  + +V L+  D L+ E+R  + 
Sbjct: 237 SPLLHELTFQAMAYDLLPIENDVYKYVNT----GGNEVPEKEVLLDEKDDLWVEMRHQHI 292

Query: 298 EVVVQVLRQKATSMKQDYTEVTTM-SQTVSELKDFVKKLNSLPEM----TRHINLAQHLS 352
            VV Q + +K      +    T      + +L   +KK+    +     + H++LA+   
Sbjct: 293 AVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCM 352

Query: 353 TFTSKPSF----LGQ-LDMEHTIIEAQSYDICFEYIEEMIHKQEPLNKVLRLLILFSVTN 407
               +       + Q L M       +  D     +  ++ ++      +R+++L+ +  
Sbjct: 353 KQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHK 412

Query: 408 SGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDT 467
            G+ ++    L +        E    +N+++  G+   Q+        K           
Sbjct: 413 GGISEENLAKLVQHA--HIPAEEKWIINDMQNLGVPIIQDGGRR----KIPQPYHTHNRK 466

Query: 468 ANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMS 527
               D +Y  S + P    +++ A+               GP    ++        +   
Sbjct: 467 ERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKD 526

Query: 528 QGLSSSIDKRSLVLVVFVGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFS 587
           +G  +S      +++  VGG++++E+ +   ++      ++VI+G+T I++   L     
Sbjct: 527 KG-QASYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPEGLLRDLR 585

Query: 588 E 588
           +
Sbjct: 586 K 586

PyMOL of d1epua_

>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 589	Back information, alignment and structure

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 653	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		591
d1dn1a_		589	Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [Tax	100.0
d1epua_		590	Neuronal Sec1, NSec1 {Longfin inshore squid (Lolig	100.0
d1mqsa_		653	Sly1P protein {Baker's yeast (Saccharomyces cerevi	100.0

>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Sec1/munc18-like (SM) proteins
superfamily: Sec1/munc18-like (SM) proteins
family: Sec1/munc18-like (SM) proteins
domain: Neuronal Sec1, NSec1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-90  Score=769.33  Aligned_cols=549  Identities=16%  Similarity=0.264  Sum_probs=437.9

Q ss_pred             HHHHHHHHHHHH-HhhcCCC---ceEEEEcCCCccccccccCchhHHhcCce-eEEcc--CCCCCCCCceEEEEECCChH
Q 007733           16 SIREQSQRDLVN-ILKNIRG---KKCLVIDPKLSGSLSLIVPTSTLKEYGIE-LRLLS--AEPVQTDCAKVVYFVGPQFI   88 (591)
Q Consensus        16 ~l~~~~~~~l~~-~l~~~~g---~kvLi~D~~~~~~ls~~~~~~~L~~~gV~-i~~l~--~~~~~~~~~~~Iy~i~pt~~   88 (591)
                      +||+++++++++ ++++++|   |||||+|+.++++||++|++++|+++||+ ++.|+  |+|++.  .+|||||+|+.+
T Consensus         2 ~~~~~~~~~~l~~~~~~v~~~~~wKvLI~D~~~~~ils~~~~~~~L~~~gV~l~~~l~~~r~~~~~--~~aIy~i~Pt~~   79 (589)
T d1dn1a_           2 GLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPS--LEAVYLITPSEK   79 (589)
T ss_dssp             CHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTT--SEEEEEECCCHH
T ss_pred             ChHHHHHHHHHHHHHhccCCCCccEEEEEcCCcHHHHHhhcCHHHHHHCCCeEEEeccCCCCCCCC--CCEEEEEcCCHH
Confidence            489999999995 9999964   99999999999999999999999999999 89996  678764  789999999999


Q ss_pred             HHHHHHHHhhccccCCCCceEEEEEecCCcHHHHHHHHHcCcCceee-EEEEcccceecCCCeEEeeccccccccccc--
Q 007733           89 SMRFISSHVHDDASKGLQREYFLYFVPRRSVACEKILEEEKVHNLMT-IGEYPLYMVPLDEDVLSFELDLAHKEWQVD--  165 (591)
Q Consensus        89 ~i~~i~~~~~~~~~~~~y~~~~i~f~p~~~~~~~~~L~~~~~~~~i~-v~e~~~df~pld~~lfsl~~~~~~~~~~~~--  165 (591)
                      |+++|++|++++. .+.|++|||+|+|+++..+.+.|+++++.+.|. |.|+++||+|+|+|+|||++|++|..+|.+  
T Consensus        80 ni~~i~~d~~~~~-~~~Y~~~~i~F~~~~~~~~le~La~~~~~~~i~~v~e~~~df~~le~d~fsl~~~~~~~~~~~~~~  158 (589)
T d1dn1a_          80 SVHSLISDFKDPP-TAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHK  158 (589)
T ss_dssp             HHHHHHHTTSSGG-GCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCGGG
T ss_pred             HHHHHHHHhcchh-hcccCeEEEEECCCCCHHHHHHHHhcCccccCCeEEEEecceeeCCCCEEEecCCchHHHhcCCcc
Confidence            9999999998753 458999999999999999999999999999885 999999999999999999999999999863  


Q ss_pred             --CCCchHHHHHHHHHHHHHHcCCCCeEEEeCCc--hHHHHHHHHHhhhc-cCC--CCCCCCCCCcceEEEEecCCCCcc
Q 007733          166 --GDASSLWHIAKAIHKLEFTFGLIPNVRAKGKA--SVRVAEILNRMQTE-EPV--SLSDMNIPEINTLVLIDREVDMVT  238 (591)
Q Consensus       166 --~d~~~l~~ia~~L~~l~~~~g~~P~I~~~g~~--a~~va~~l~~l~~~-~~~--~~~~~~~~~~~~LiIlDR~~D~~T  238 (591)
                        .+.+.++++|++|+++|.++|.+|.|||+|+.  |+.+|++++++..+ ...  +......+++++|||+||++|++|
T Consensus       159 ~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~~~la~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~DliT  238 (589)
T d1dn1a_         159 AQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSS  238 (589)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCSST
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCCCCeEEEcCCchHHHHHHHHHHHHHHHHHhcCcccCCCcccCCceEEEeccCccccc
Confidence              34567899999999999999999999999864  67888888743222 111  112222456789999999999999


Q ss_pred             cccchhhhhHHhhhhhcccCCeEEeCccccccccCCCCceEeecCCCchhHHHhhccCHHHHHHHHHHHHHHHHHHHHhh
Q 007733          239 PMCSQLTYEGLVDEFLRINNGSVELDASIMGAQQQDGKKMKVPLNSSDKLFKEIRDLNFEVVVQVLRQKATSMKQDYTEV  318 (591)
Q Consensus       239 Pll~~~TYqall~d~~~I~~~~v~~~~~~~~~~~~~~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~~~~  318 (591)
                      ||+||||||||+||+|||++|.|+++....+.    ..++++.++++|++|.++||+||++|++.|.+++++++++++..
T Consensus       239 PLlh~~TYq~li~e~~gI~~n~v~i~~~~~~~----~~~k~~~l~~~D~~~~~~r~~~f~~v~~~i~~~~~~~~~~~~~~  314 (589)
T d1dn1a_         239 PVLHELTFQAMSYDLLPIENDVYKYETSGIGE----ARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMN  314 (589)
T ss_dssp             TTSCCCBHHHHHHHHSCCBTTEEEEEECSSSS----CEEEEEECSTTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             cccccccHHHHHHHHhcccCCeEEecCCCCCc----ccceEeecCCCcHHHHHhhcccHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999998654221    23577889889999999999999999999999999999987765


Q ss_pred             ccccccHHHHHHHHHhcCCcch----HHHHHHHHHHHHHhcCchhhhchHHHHHHHHhcCCc-----chHHHHHHHHHh-
Q 007733          319 TTMSQTVSELKDFVKKLNSLPE----MTRHINLAQHLSTFTSKPSFLGQLDMEHTIIEAQSY-----DICFEYIEEMIH-  388 (591)
Q Consensus       319 ~~~~~~~~e~~~~v~~lp~~~~----l~~H~~l~~~i~~~~~~~~l~~~~~lEq~i~~~~~~-----~~~~~~i~~li~-  388 (591)
                      +..+.++++|+++|+++|++++    ++.|++|+++|++.++ ++|.+++++||++++|.+.     +++++.+.+++. 
T Consensus       315 ~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~l~~~~~-~~l~~~~~~Eq~i~~~~~~~~~~~~~~~~~i~~~l~~  393 (589)
T d1dn1a_         315 TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLD  393 (589)
T ss_dssp             ------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHSBCSSCCBCCCTHHHHHHHHHC
T ss_pred             ccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhc
Confidence            5433588899999999999986    9999999999999996 7899999999999998654     346777777776 


Q ss_pred             cCCChHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHhchhHHHHHHHHHhcCCcccccCCcChHHHHhhcCcccccCCC
Q 007733          389 KQEPLNKVLRLLILFSVTNSGLPKKQFDYLRRELLHSYGFEHMATLNNLEKAGLFKKQETKSNWQLVKRALQLVEDTDTA  468 (591)
Q Consensus       389 ~~~~~~d~lRLl~L~~l~~~g~~~~~~~~l~~~~~~~~g~~~~~~l~~l~~~gl~~~~~~~~~~~~~~k~l~l~~~~~~~  468 (591)
                      .+.+.+++|||+|||+++++|+++++++.+++.+  .++.+.+..+.+|+++|....+...  .   .+...   .....
T Consensus       394 ~~~~~~d~LRL~~l~~l~~~g~~~~~~~~l~~~~--~~~~~~~~~~~~l~~lg~~~~~~~~--~---~~~~~---~~~~~  463 (589)
T d1dn1a_         394 ANVSTYDKIRIILLYIFLKNGITEENLNKLIQHA--QIPPEDSEIITNMAHLGVPIVTDST--L---RRRSK---PERKE  463 (589)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTCBCHHHHHHHHHHH--TCCHHHHHHHHHGGGGTCCCBCCCG--G---GCCCC---CCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHc--CCChHHHHHHHHHHHhCCccccCch--h---hcccc---ccccc
Confidence            6689999999999999999999999999887653  3556678899999999987554321  0   11111   11223


Q ss_pred             CCCCccccccCccccHHHHHHHHHHcCCCchHHHhhcCCCCccccccCCCCCCCCCC--CCCCCC--CCCCCCcEEEEEE
Q 007733          469 NPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFD--MSQGLS--SSIDKRSLVLVVF  544 (591)
Q Consensus       469 ~~~~~~~~~s~y~Pl~~rive~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~--~~~~~~--~~~~~~~~viVfv  544 (591)
                      .+.+.+|+|+||+|+++|+++.++++.++. +.+ ..+.+........   ...+.+  .+...+  .....+++|||||
T Consensus       464 ~~~~~~~~~s~y~Pl~~~l~~~~~~~~l~~-~~~-p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~viVF~  538 (589)
T d1dn1a_         464 RISEQTYQLSRWTPIIKDIMEDTIEDKLDT-KHY-PYISTRSSASFST---TAVSARYGHWHKNKAPGEYRSGPRLIIFI  538 (589)
T ss_dssp             CCCSCCCTTCCCCCHHHHHHHHHHTTCSCT-TTS-CCSSCC-----------------------------CCCCEEEEEE
T ss_pred             CCcccccccccchHHHHHHHHHHHhCCCCc-ccC-cccCCCccccccc---cccccccccccccCCCCcCCCCCEEEEEE
Confidence            456788999999999999999999876653 111 1111111000000   000000  010010  1112378999999


Q ss_pred             EcCcCHHHHHHHHHHHHhcCCCceEEEEecCCcCchhHHHhhhh
Q 007733          545 VGGVTFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE  588 (591)
Q Consensus       545 iGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~l~~  588 (591)
                      |||+||+|++++|+++++. ++++|+||||+|+||++|+++|..
T Consensus       539 vGGvTy~E~~~l~~l~~~~-~~~~iiiGsT~iln~~~fl~~l~~  581 (589)
T d1dn1a_         539 LGGVSLNEMRCAYEVTQAN-GKWEVLIGSTHILTPQKLLDTLKK  581 (589)
T ss_dssp             ETCEEHHHHHHHHHHHHHH-SSCEEEEEESSEECHHHHHHHHTT
T ss_pred             ECCcCHHHHHHHHHHHHHc-CCceEEEEeCCEecHHHHHHHHHH
Confidence            9999999999999999885 357999999999999999999875

PyMOL of d1dn1a_

>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid (Loligo pealei) [TaxId: 6621]}	Back information, alignment and structure

>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure