Citrus Sinensis ID: 007760

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
MVGFDELKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHVSSFSGSPNTFCGSPKTEKSSNIILGFLTANGGLRKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLKRADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNPNPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIKREAAAREKEAISAKLDDTRKIRSTSSSRSRVNKAP
ccccHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHcHHHHHcHHHccccccccccccccccccHHHHHcccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccc
cccHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHccccccHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHcccc
mvgfdelklggveelslahpdpVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHAnlkdddsvpiesvlAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEwkdendkvmpVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKhvssfsgspntfcgspktekssNIILGFLtangglrkrstsqprastisrnsllhqpnsenatvngnftgglkRADSFRKKCAAgenvlrksiwpsknkvvdsscgkentqvkenkdnnidefkigdtnvSVEVKnkvggyehevsqnkgnpnpvkedvvsgflYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIKREAAAREKEAISAKlddtrkirstsssrsrvnkap
mvgfdelklggveelslahpdpVVLELNRLQNQLKEKDRELADAQGEIkalratevlkdKAIEELrnefgkidgklrvtqnvlehrnleikkvtgekkDALAAQYAAEATLRRVHanlkdddsvpiESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQeenrilektnrqkvlevEKLSGTIKELEEAvlaggsaanaIRDYQRQITElneekrtlerelarvkvsanrvatvvanewkdendkvmpvRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLkhvssfsgspntfcGSPKTEKSSNIILGFLtangglrkrstSQPRASTisrnsllhqpnsenatvngnFTGGLKRADSFRKKCAAgenvlrksiwpsknkvvdsscgkentqvkenkdnnidefkigdtnvsVEVKNKVGGYEhevsqnkgnpnpvkEDVVSGFLYDRLQKEVILLRKfceskdsclnakdeEIKMLIRKVDALTKAIEAESKKIKREAAARekeaisaklddtrkirstsssrsrvnkap
MVGFDELKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDalaaqyaaeaTLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTakaeaqlkeklklrlktleeglkHVSSFSGSPNTFCGSPKTEKSSNIILGFLTANGGLRKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLKRADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNPNPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTkaieaeskkikreaaarekeaisakLDDTRKIrstsssrsrVNKAP
**********************VVL************************ALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAAL***************MALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQIT***********ELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLL***************************************************************IILGFLTA*************************************************KCAAGENVLRKSIW***************************************************************DVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTK*********************************************
**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MVGFDELKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHVSSFSGSPNTFCGSPKTEKSSNIILGFLTANGGL*************SRNSLLHQPNSENATVNGNFTGGLKRADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNPNPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIKREAAAREKEAISAKLD*******************
*VGFDELKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEG***************************************************************************************************************************************************************DVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIKREAAAREKEA*S*K*********************
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MVGFDELKLGGVEELSLAHPDPVVLExxxxxxxxxxxxxxxxxxxxxxxxxxxxEVLKDKAIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKAKEMALLEAEKILRSALERALIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVLAGGSAANAxxxxxxxxxxxxxxxxxxxxxxxxxxxxANRVATVVANEWKDENDKVMPxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKAEAQLKEKLKLRLKTLEEGLKHVSSFSGSPNTFCGSPKTEKSSNIILGFLTANGGLRKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLKRADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNPNPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCxxxxxxxxxxxxxxxxxxxxxxxxxxxxIKREAAAREKEAISAKLDDTRKIRSTSSSRSRVNKAP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query590 2.2.26 [Sep-21-2011]
Q8GYX3513 Microtubule-associated pr yes no 0.850 0.978 0.554 1e-151
Q9C9X0622 Microtubule-associated pr no no 0.9 0.853 0.497 1e-139
Q8L7S4634 Microtubule-associated pr no no 0.915 0.851 0.498 1e-138
Q9ZUA3629 Microtubule-associated pr no no 0.896 0.841 0.498 1e-136
Q9LQU7604 Microtubule-associated pr no no 0.881 0.860 0.503 1e-135
Q6Z746599 Microtubule-associated pr yes no 0.881 0.868 0.514 1e-133
Q2QLI6567 Microtubule-associated pr no no 0.869 0.904 0.506 1e-132
Q653N3608 Microtubule-associated pr no no 0.922 0.894 0.502 1e-130
Q10PZ6515 Microtubule-associated pr no no 0.762 0.873 0.536 1e-126
>sp|Q8GYX3|MP705_ARATH Microtubule-associated protein 70-5 OS=Arabidopsis thaliana GN=MAP70.5 PE=1 SV=1 Back     alignment and function desciption
 Score =  535 bits (1378), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 317/572 (55%), Positives = 401/572 (70%), Gaps = 70/572 (12%)

Query: 18  AHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGKIDGKLR 77
           A  +P V + + LQ+QLKEK++EL  A+ E++ALR  E LKD+  +ELR    K++ KL 
Sbjct: 3   AAENPFVSDTSSLQSQLKEKEKELLAAKAEVEALRTNEELKDRVFKELRENVRKLEEKLG 62

Query: 78  VTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKDDDSVPIESVLAPLEADI 137
            T+N ++ + LE KK+  EK+DALAAQ AAE  LRRV+ + +DDDS+P+ES++APLE+ I
Sbjct: 63  ATENQVDQKELERKKLEEEKEDALAAQDAAEEALRRVYTHQQDDDSLPLESIIAPLESQI 122

Query: 138 KTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFELKRQIE 197
           K +K EI+ALQEDKKAL+R TK+KE ALLEAE+ILRSALERALIVEEVQN NFEL+RQIE
Sbjct: 123 KIHKHEISALQEDKKALERLTKSKESALLEAERILRSALERALIVEEVQNHNFELRRQIE 182

Query: 198 ICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRT 257
           ICQ+EN+ LEK NRQKVLE+EKLS +I ELEEA+LAGG+AANA+RDY+RQI++LN+EKRT
Sbjct: 183 ICQDENKFLEKINRQKVLEIEKLSQSIVELEEAILAGGTAANAVRDYRRQISQLNDEKRT 242

Query: 258 LERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERT 317
           LERELARVKVSA+RVA  VANEWKDEND+VMPV+QWLEERR+L  EMQ+LKDKLA+SERT
Sbjct: 243 LERELARVKVSASRVALAVANEWKDENDRVMPVKQWLEERRILHGEMQKLKDKLAVSERT 302

Query: 318 AKAEAQLKEKLKLRLKTLEEGLKHVSSFSGSPNTFCGSP--KTEKSSNIILGFLTANGGL 375
           AKAE+QLKE+LKLRLKT+E+GLK        PNTF  SP  KTEKS  I LGFLT+ GG 
Sbjct: 303 AKAESQLKERLKLRLKTIEDGLK-------GPNTFFVSPTTKTEKSGKI-LGFLTSGGG- 353

Query: 376 RKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLKRADSFRKKCAAGENVLRKSIWP 435
                S+ R+S+                + G+ TG +   +    +    + +    I  
Sbjct: 354 -----SKKRSSS---------------QLRGSVTGRIHAMNQPIDRVGESDEMENSKI-- 391

Query: 436 SKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNPNPV 495
           + N + D    +E+++ K  +D N+                                   
Sbjct: 392 TANGLTDQH--EEDSERKTEEDGNV----------------------------------Y 415

Query: 496 KEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIK 555
            ED+VSGFLYDRLQKEVI LRK CESK+  +NAK+EEIKML++KVDALTKAIE E+KK K
Sbjct: 416 SEDMVSGFLYDRLQKEVIALRKLCESKEGTINAKNEEIKMLLKKVDALTKAIEVETKKAK 475

Query: 556 REAAAREKEAISAKLDDTRKI-RSTSSSRSRV 586
           REAAAREKE   A L++  K+ R     RSR+
Sbjct: 476 REAAAREKENALAMLNEESKLCRKAKLPRSRI 507
Plant-specific protein that interact with microtubules and regulates microtubule dynamics. May play a role in anisotropic cell expansion and organ growth. In association with MAP70.1, is essential for the normal banding pattern of secondary cell wall and for the proper development of xylem tracheary elements and wood formation.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9X0|MP701_ARATH Microtubule-associated protein 70-1 OS=Arabidopsis thaliana GN=MAP70.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L7S4|MP702_ARATH Microtubule-associated protein 70-2 OS=Arabidopsis thaliana GN=MAP70.2 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUA3|MP703_ARATH Microtubule-associated protein 70-3 OS=Arabidopsis thaliana GN=MAP70.3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQU7|MP704_ARATH Microtubule-associated protein 70-4 OS=Arabidopsis thaliana GN=MAP70.4 PE=1 SV=1 Back     alignment and function description
>sp|Q6Z746|MP702_ORYSJ Microtubule-associated protein 70-2 OS=Oryza sativa subsp. japonica GN=MAP70.2 PE=2 SV=1 Back     alignment and function description
>sp|Q2QLI6|MP701_ORYSJ Microtubule-associated protein 70-1 OS=Oryza sativa subsp. japonica GN=MAP70.1 PE=2 SV=1 Back     alignment and function description
>sp|Q653N3|MP703_ORYSJ Microtubule-associated protein 70-3 OS=Oryza sativa subsp. japonica GN=MAP70.3 PE=2 SV=1 Back     alignment and function description
>sp|Q10PZ6|MP704_ORYSJ Microtubule-associated protein 70-4 OS=Oryza sativa subsp. japonica GN=MAP70.4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
225469059584 PREDICTED: microtubule-associated protei 0.986 0.996 0.721 0.0
297736716535 unnamed protein product [Vitis vinifera] 0.903 0.996 0.680 0.0
147841964605 hypothetical protein VITISV_001458 [Viti 0.964 0.940 0.656 0.0
224139464502 predicted protein [Populus trichocarpa] 0.850 1.0 0.716 0.0
255563772531 Myosin heavy chain, clone, putative [Ric 0.883 0.981 0.648 0.0
356564454527 PREDICTED: microtubule-associated protei 0.874 0.979 0.605 1e-175
357480617565 hypothetical protein MTR_4g133890 [Medic 0.915 0.955 0.612 1e-169
224086564516 predicted protein [Populus trichocarpa] 0.864 0.988 0.632 1e-166
356520112537 PREDICTED: microtubule-associated protei 0.855 0.940 0.604 1e-166
356557979515 PREDICTED: microtubule-associated protei 0.862 0.988 0.622 1e-164
>gi|225469059|ref|XP_002267938.1| PREDICTED: microtubule-associated protein 70-5-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/589 (72%), Positives = 485/589 (82%), Gaps = 7/589 (1%)

Query: 1   MVGFDELKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDK 60
           MV + EL  GG +ELSLAH DP+VLE NRLQNQLKEKDREL  A  EIKALRAT VLKDK
Sbjct: 1   MVDYKELVGGGGDELSLAHSDPIVLEFNRLQNQLKEKDRELGVASSEIKALRATIVLKDK 60

Query: 61  AIEELRNEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKD 120
           A+E+ RNE  K+D +L V +N+L+ ++LEIKK+T EKKDALAAQ+AAEA LRRVHAN KD
Sbjct: 61  ALEQFRNEVNKLDERLGVIENLLKQKDLEIKKLTSEKKDALAAQFAAEAALRRVHANQKD 120

Query: 121 DDSVPIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERAL 180
           DD+VPIE V+APLEADIK YK EI  LQED KAL+RH K+KE ALLEAE+ILRSALERAL
Sbjct: 121 DDTVPIEDVIAPLEADIKMYKIEIGRLQEDNKALERHIKSKESALLEAERILRSALERAL 180

Query: 181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANA 240
           IVEEVQN NFELKRQIEICQEEN+IL+KTNRQKVLEVEKLS TI+ELEEA+LAGG AANA
Sbjct: 181 IVEEVQNQNFELKRQIEICQEENKILDKTNRQKVLEVEKLSQTIQELEEAILAGGVAANA 240

Query: 241 IRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLL 300
           IRDY+RQI+ELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMP++QWLEERRLL
Sbjct: 241 IRDYRRQISELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPIKQWLEERRLL 300

Query: 301 QAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHVSSFSGSPNTFCGSPKTEK 360
           QAE QRL+DKLAISERTAKAEAQLK+KLKLRLKTLEEGLK VSSFS +P   C SPK EK
Sbjct: 301 QAETQRLRDKLAISERTAKAEAQLKDKLKLRLKTLEEGLKQVSSFSENPYLSCRSPKPEK 360

Query: 361 SSNIILGFLTANGGLRKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLKRADSFRK 420
            SN ILGFL+ NGGL++RSTSQPR S I + S L  PN EN   +    G LK  +S +K
Sbjct: 361 -SNHILGFLSGNGGLKRRSTSQPRGSCIGKTSPLMPPNVENGAADA--AGELKGVNSLKK 417

Query: 421 KCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGG 480
           K A+GEN+LRKS+W S++KV D   GKENT++K N D +ID+F   DT VS + K K G 
Sbjct: 418 KYASGENMLRKSLWASRSKVADIG-GKENTEMKSNTDMHIDKFN-NDTAVSADAKIKGGA 475

Query: 481 YEHEVSQNKGNPNPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKV 540
            E   +QN G+     ED+VS FLYDRLQ+EVI LRK CE K++ L AKD+EIKML+RKV
Sbjct: 476 KEE--TQNVGSAGFDSEDMVSAFLYDRLQREVINLRKSCEVKNNTLTAKDDEIKMLMRKV 533

Query: 541 DALTKAIEAESKKIKREAAAREKEAISAKLDDTRKIRSTSSSRSRVNKA 589
           DAL+KAIE ESKKIKREAAAREKEAIS K D+ +KIR+T SS+ RV KA
Sbjct: 534 DALSKAIEVESKKIKREAAAREKEAISTKADENKKIRNTDSSKRRVAKA 582

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736716|emb|CBI25752.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147841964|emb|CAN63131.1| hypothetical protein VITISV_001458 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139464|ref|XP_002323125.1| predicted protein [Populus trichocarpa] gi|222867755|gb|EEF04886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563772|ref|XP_002522887.1| Myosin heavy chain, clone, putative [Ricinus communis] gi|223537872|gb|EEF39487.1| Myosin heavy chain, clone, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356564454|ref|XP_003550469.1| PREDICTED: microtubule-associated protein 70-5-like [Glycine max] Back     alignment and taxonomy information
>gi|357480617|ref|XP_003610594.1| hypothetical protein MTR_4g133890 [Medicago truncatula] gi|355511649|gb|AES92791.1| hypothetical protein MTR_4g133890 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224086564|ref|XP_002307909.1| predicted protein [Populus trichocarpa] gi|222853885|gb|EEE91432.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520112|ref|XP_003528709.1| PREDICTED: microtubule-associated protein 70-5-like [Glycine max] Back     alignment and taxonomy information
>gi|356557979|ref|XP_003547287.1| PREDICTED: microtubule-associated protein 70-5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
TAIR|locus:2200306622 MAP70-1 "microtubule-associate 0.674 0.639 0.507 9e-111
TAIR|locus:2130734513 MAP70-5 "microtubule-associate 0.766 0.881 0.514 5.5e-109
TAIR|locus:2826057634 MAP70-2 "microtubule-associate 0.747 0.695 0.480 1.5e-99
TAIR|locus:2006787604 MAP70-4 "AT1G14840" [Arabidops 0.679 0.663 0.516 1.7e-98
UNIPROTKB|E1BY272000 E1BY27 "Uncharacterized protei 0.501 0.148 0.232 1.3e-08
UNIPROTKB|E1BQV22001 E1BQV2 "Uncharacterized protei 0.501 0.147 0.232 1.3e-08
UNIPROTKB|F1NPC4405 LOC429272 "Uncharacterized pro 0.466 0.679 0.236 5e-08
UNIPROTKB|Q8IIG71070 PF11_0207 "Uncharacterized pro 0.462 0.255 0.217 7.3e-08
ZFIN|ZDB-GENE-030131-53361936 wu:fd14a01 "wu:fd14a01" [Danio 0.476 0.145 0.201 2.1e-07
TAIR|locus:2012423 1085 LINC3 "LITTLE NUCLEI3" [Arabid 0.467 0.254 0.244 2.3e-07
TAIR|locus:2200306 MAP70-1 "microtubule-associated proteins 70-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 977 (349.0 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
 Identities = 209/412 (50%), Positives = 284/412 (68%)

Query:    13 EELSLAH-PDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELRNEFGK 71
             E ++L H  DPV +ELNRL+N++++KDREL++A  EIKALR +E  ++KA EEL +E  K
Sbjct:    57 EFITLLHGSDPVKVELNRLENEVRDKDRELSEANAEIKALRLSERQREKACEELTDELAK 116

Query:    72 IDGKLRVTQNVLEHRNLEIKKVTGEKKDXXXXXXXXXXTLRRVHANLKDDDSVPIESVLA 131
             +DGKL++T+++L+ +NLEIKK+  EKK           TLRRVHA  KDDD  PIE++LA
Sbjct:   117 LDGKLKLTESLLQSKNLEIKKINEEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILA 176

Query:   132 PLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSALERALIVEEVQNLNFE 191
             PLEA++K  + EI  LQED +AL R TK+KE ALL+AE+ + +AL +A +V+++QN N E
Sbjct:   177 PLEAELKLARSEIGKLQEDNRALDRLTKSKEAALLDAERTVETALAKAALVDDLQNKNQE 236

Query:   192 LKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITEL 251
             L +QIEICQEEN+IL++ +RQKV EVEKL+ T++ELEEAVLAGG+AANA+RDYQR+  E+
Sbjct:   237 LMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEEAVLAGGAAANAVRDYQRKFQEM 296

Query:   252 NEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKL 311
             NEE++TL+RELAR KV+ANRVATVVANEWKD NDKVMPV+QWLEERR LQ EMQ+L+DKL
Sbjct:   297 NEERKTLDRELARAKVTANRVATVVANEWKDGNDKVMPVKQWLEERRFLQGEMQQLRDKL 356

Query:   312 AISERTXXXXXXXXXXXXXXXXXXXXXXXHVSSFS--GSPN--TFCGSPKTEKS---SNI 364
             AIS+R                          SS S   +P   +    P   +S   S+ 
Sbjct:   357 AISDRAAKSEAQLKDKFQLRLRVLEETLRGTSSISIRNTPEGRSMSNGPSRRQSIGGSDN 416

Query:   365 ILGFLTANGGLRKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLKRAD 416
             +  F  +NG L K++   P  ++ + NS     N++  + +  F GG +  D
Sbjct:   417 LQKF-ASNGFLSKKT---PMRNSFTSNSTSVLKNAKGTSKS--FDGGTRSLD 462
GO:0005737 "cytoplasm" evidence=ISM
GO:0007010 "cytoskeleton organization" evidence=TAS
GO:0008017 "microtubule binding" evidence=IDA
GO:0010005 "cortical microtubule, transverse to long axis" evidence=IDA
GO:0009832 "plant-type cell wall biogenesis" evidence=IMP
GO:0010051 "xylem and phloem pattern formation" evidence=IMP
GO:0010075 "regulation of meristem growth" evidence=RCA
TAIR|locus:2130734 MAP70-5 "microtubule-associated proteins 70-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826057 MAP70-2 "microtubule-associated proteins 70-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006787 MAP70-4 "AT1G14840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BY27 E1BY27 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQV2 E1BQV2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPC4 LOC429272 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5336 wu:fd14a01 "wu:fd14a01" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6Z746MP702_ORYSJNo assigned EC number0.51470.88130.8681yesno
Q8GYX3MP705_ARATHNo assigned EC number0.55410.85080.9785yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVI.621.1
hypothetical protein (502 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
pfam07058351 pfam07058, Myosin_HC-like, Myosin II heavy chain-l 1e-109
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-10
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-09
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-06
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 9e-06
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 5e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-04
PRK05771 646 PRK05771, PRK05771, V-type ATP synthase subunit I; 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
>gnl|CDD|203570 pfam07058, Myosin_HC-like, Myosin II heavy chain-like Back     alignment and domain information 
 Score =  330 bits (848), Expect = e-109
 Identities = 195/392 (49%), Positives = 240/392 (61%), Gaps = 49/392 (12%)

Query: 181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANA 240
           +V+++QN N EL +QIEICQEEN+IL+K +RQKV EVEKLS +++ELEEAVLAGG+AANA
Sbjct: 1   MVDDLQNKNQELMKQIEICQEENKILDKMHRQKVAEVEKLSQSVRELEEAVLAGGAAANA 60

Query: 241 IRDYQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLL 300
           +RDYQR+  E+NEE++TLERELAR KVSANRVATVVANEWKDENDKVMPV+QWLEERR L
Sbjct: 61  VRDYQRKFQEMNEERKTLERELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFL 120

Query: 301 QAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLKHVSSFSGSPNTFCGSPKTEK 360
           Q EMQ+L+DKLAIS+R AK+EAQLKEK KLRLK LEEGLK  +S    P T   S     
Sbjct: 121 QGEMQQLRDKLAISDRAAKSEAQLKEKFKLRLKVLEEGLKGPNSSFVRPTTVGRSESNGP 180

Query: 361 SSNIILG-------FLTANGGLRKRSTSQPRASTISRNSLLHQPNSENATVNGNFTGGLK 413
           +    LG       F +  G  +KR +SQ R S                 + G  +  LK
Sbjct: 181 TRRQSLGGAETSPKFTSNGGLSKKRPSSQLRGS-----------------LTGRISTVLK 223

Query: 414 RADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNID-EFKIGDTNVSV 472
            A         G   +                  + +++  N  +N     K  +     
Sbjct: 224 HAKGTSISFDGGTRSM------------------DRSKILANGPSNFPLNDKHEEGTSRG 265

Query: 473 EVKNKVGGYEHEVSQNKGNPNPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEE 532
           E  +     E E      + N   ED V G LYD LQKEVI LRK CE KD  LN KDE 
Sbjct: 266 ESPDSERKTEEE------DGNAYSEDSVPGVLYDLLQKEVIALRKACEEKDQSLNDKDEA 319

Query: 533 IKMLIRKVDALTKAIEAESKKIKREAAAREKE 564
           I+ML +KV+ LTKA+E E+KK++RE AA EKE
Sbjct: 320 IEMLAKKVETLTKAMEVEAKKMRREVAAMEKE 351

This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana. Length = 351
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 590
PF07058351 Myosin_HC-like: Myosin II heavy chain-like; InterP 100.0
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.88
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.77
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.62
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.59
PRK11637428 AmiB activator; Provisional 97.58
PRK03918 880 chromosome segregation protein; Provisional 97.32
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.13
PRK02224880 chromosome segregation protein; Provisional 96.83
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.67
PRK02224 880 chromosome segregation protein; Provisional 96.65
PHA02562562 46 endonuclease subunit; Provisional 96.33
PRK11637428 AmiB activator; Provisional 96.3
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.22
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 96.11
KOG0963629 consensus Transcription factor/CCAAT displacement 95.72
PF121281201 DUF3584: Protein of unknown function (DUF3584); In 95.14
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 95.0
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.95
PRK03918 880 chromosome segregation protein; Provisional 94.54
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 94.4
TIGR006061311 rad50 rad50. This family is based on the phylogeno 94.14
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 93.54
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.4
KOG0977546 consensus Nuclear envelope protein lamin, intermed 93.27
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 92.86
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 92.56
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 92.53
TIGR006061311 rad50 rad50. This family is based on the phylogeno 92.29
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 91.63
PF00038312 Filament: Intermediate filament protein; InterPro: 90.75
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 90.72
PF10174775 Cast: RIM-binding protein of the cytomatrix active 90.65
PF05557722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 90.61
KOG0996 1293 consensus Structural maintenance of chromosome pro 90.44
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 90.42
PRK09039343 hypothetical protein; Validated 90.12
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 89.49
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 88.47
COG4942420 Membrane-bound metallopeptidase [Cell division and 87.28
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 87.06
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 86.93
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.74
PF00038312 Filament: Intermediate filament protein; InterPro: 86.61
PRK04863 1486 mukB cell division protein MukB; Provisional 86.2
KOG0977546 consensus Nuclear envelope protein lamin, intermed 85.91
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 84.84
PRK10884206 SH3 domain-containing protein; Provisional 84.8
PHA02562562 46 endonuclease subunit; Provisional 84.11
KOG46741822 consensus Uncharacterized conserved coiled-coil pr 83.96
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 83.86
PF06818202 Fez1: Fez1; InterPro: IPR009638 This family repres 83.29
COG0419908 SbcC ATPase involved in DNA repair [DNA replicatio 83.28
TIGR026801353 conserved hypothetical protein TIGR02680. Members 83.22
PRK01156895 chromosome segregation protein; Provisional 82.13
KOG09331174 consensus Structural maintenance of chromosome pro 81.95
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 81.53
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 80.88
PF05266190 DUF724: Protein of unknown function (DUF724); Inte 80.03
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana Back     alignment and domain information 
Probab=100.00  E-value=4e-156  Score=1154.11  Aligned_cols=343  Identities=61%  Similarity=0.823  Sum_probs=312.5

Q ss_pred             hHHHHhhhhHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHHhhHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHhHHHH
Q 007760          181 IVEEVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRDYQRQITELNEEKRTLER  260 (590)
Q Consensus       181 iVedvQN~N~EL~kQiEIcqEENkiLeK~hRQKV~EVEKLsqTi~ELEEaiLAgGaaANAvrdYqrq~~elnEEkrtLeR  260 (590)
                      |||||||+||||||||||||||||||||||||||+|||||||||+||||||||||+|||||||||||++|||||||||||
T Consensus         1 iVdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeR   80 (351)
T PF07058_consen    1 IVDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLER   80 (351)
T ss_pred             CchhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhccccchhhhhcccccCCCccchhHHHHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHhhhC
Q 007760          261 ELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAEMQRLKDKLAISERTAKAEAQLKEKLKLRLKTLEEGLK  340 (590)
Q Consensus       261 ELARaKVsaNRVA~vvANEWKD~nDKvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAKaEaQLkeKlklRLK~LEE~Lk  340 (590)
                      ||||||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||+||||||||||
T Consensus        81 ELARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~Lk  160 (351)
T PF07058_consen   81 ELARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGLK  160 (351)
T ss_pred             HHHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCc--ccCCCCCccccccccccc-----ccCCccccc-CCCCCCccccccccccccCCCccccccCCcccCc
Q 007760          341 HVSSFSGSPNT--FCGSPKTEKSSNIILGFL-----TANGGLRKR-STSQPRASTISRNSLLHQPNSENATVNGNFTGGL  412 (590)
Q Consensus       341 ~~~s~s~~~t~--r~~S~~p~r~~s~~~g~~-----t~Ng~~~rR-~~sQ~R~s~~~~~~~l~~pn~~~~~~~~~~~s~~  412 (590)
                      +++|+++++|+  +|.|+||++|++ +||++     ++||++.+| |+||||+|++|+++++++        |++++|+ 
T Consensus       161 ~~~s~~~~~~~~~~s~~~gps~r~~-lgg~~~~~~~~sng~~~kr~~~sq~r~s~~~~~~~~lk--------~~~~~s~-  230 (351)
T PF07058_consen  161 GSSSNSSRPTSEGKSPSNGPSRRQS-LGGAENFSKLSSNGGLSKRRPSSQPRSSLSGSSSPVLK--------HAKGTSK-  230 (351)
T ss_pred             CCCCCCCCCCcCCCCCCCCCccCcC-CCCccccccccCCCccccCCCcccccccccccchhhhc--------ccccCcc-
Confidence            99999999988  888999999998 88877     678876655 999999999999988887        8899999 


Q ss_pred             cccCCcccccccccchhccccCCCCcccccCCCCCccccccccccCCccccccCCcccccccccccCCcccccccCCCCC
Q 007760          413 KRADSFRKKCAAGENVLRKSIWPSKNKVVDSSCGKENTQVKENKDNNIDEFKIGDTNVSVEVKNKVGGYEHEVSQNKGNP  492 (590)
Q Consensus       413 ~~~~s~~~~~~s~e~~l~~~~w~~r~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (590)
                          |||||+++    +      +++++..||+.+.               .+  .+.+++.........+....+++.+
T Consensus       231 ----sfdgg~rs----l------d~~k~~~ng~~~~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~  279 (351)
T PF07058_consen  231 ----SFDGGSRS----L------DRSKVLANGPENH---------------PV--NSKSTDASKEAEKENSEEKPNSEKP  279 (351)
T ss_pred             ----ccccCCCc----c------hhhhhhhcCcccc---------------cc--ccchhhhhhhccccCcccccccCCC
Confidence                99999998    6      8899999998432               11  0122221111111112344455778


Q ss_pred             CCCCCccchhHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHhhhhhHHHhhHHhhHHHHHhhhh
Q 007760          493 NPVKEDVVSGFLYDRLQKEVILLRKFCESKDSCLNAKDEEIKMLIRKVDALTKAIEAESKKIKREAAAREKE  564 (590)
Q Consensus       493 ~~~~~D~VsG~LYD~LQKEVi~LRKac~~Kd~sL~~KD~~IeML~KKVdtLtKAmEVE~KKmrRE~Aa~EKE  564 (590)
                      +++++|+||||||||||||||+|||+||+|||||+||||||+||+|||||||||||||||||||||||||||
T Consensus       280 ~~~~~D~VsG~LYD~LQKEVi~LRKac~eKdqsLkdKDdaIeMLaKKVdtLtKAmEVEaKKmrREvAamEKE  351 (351)
T PF07058_consen  280 NSESEDSVSGFLYDMLQKEVINLRKACHEKDQSLKDKDDAIEMLAKKVDTLTKAMEVEAKKMRREVAAMEKE  351 (351)
T ss_pred             CCCcCCcchHHHHHHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein Back     alignment and domain information
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 8e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 8e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 60/337 (17%), Positives = 124/337 (36%), Gaps = 12/337 (3%)

Query: 7    LKLGGVEELSLAHPDPVVLELNRLQNQLKEKDRELADAQGEIKALRATEVLKDKAIEELR 66
            + +     + L      +L++ R + +++ KD EL   +   +   A     ++   +L 
Sbjct: 832  MNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLC 891

Query: 67   NEFGKIDGKLRVTQNVLEHRNLEIKKVTGEKKDALAAQYAAEATLRRVHANLKD--DDSV 124
             E   +  KL+    +         ++  +K++     +  EA +       +    +  
Sbjct: 892  EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951

Query: 125  PIESVLAPLEADIKTYKKEIAALQEDKKALQRHTKAKEMALLEAEKILRSAL-ERALIVE 183
             ++  +  LE  ++  +     LQ +K       K  E  +L  E        ER L+ E
Sbjct: 952  KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 184  EVQNLNFELKRQIEICQEENRILEKTNRQKVLEVEKLSGTIKELEEAVLAGGSAANAIRD 243
             V +L   L  + E  +   ++  K          +L    K  +E             D
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 244  YQRQITELNEEKRTLERELARVKVSANRVATVVANEWKDENDKVMPVRQWLEERRLLQAE 303
               QI EL  +   L+ +LA+ +         + +E   +N         L++ R L++ 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN-------NALKKIRELESH 1124

Query: 304  MQRLKDKLAISERTAKAEAQ-LKEKLKLRLKTLEEGL 339
            +  L++ L  SE+ A+ +A+  K  L   L+ L+  L
Sbjct: 1125 ISDLQEDLE-SEKAARNKAEKQKRDLSEELEALKTEL 1160
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.42
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.12
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 97.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 96.94
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.5
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.35
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 89.18
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 83.02
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 81.94
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
Probab=97.42  E-value=0.048  Score=46.67  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=12.7

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007760           25 LELNRLQNQLKEKDRELADAQGEIKAL   51 (590)
Q Consensus        25 ~ELnRLeN~lreKdRELg~A~aEIKaL   51 (590)
                      .++..+...+.+...++..+..++..+
T Consensus        13 ~~~~~~~~~~~~l~~~l~~l~~~~~~~   39 (284)
T 1c1g_A           13 LDKENALDRADEAEADKKAAEDRSKQL   39 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444443
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00