Citrus Sinensis ID: 007771


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
MESRKVAFTEQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLVRVINNNSSRVVSWPFSFTTAVSNDTGVSVSGGRQADSSVDLVGKPQGANVSNEIAHLGNLTQEAEVGSILEANASAVSRNGNFSDSSADKVNFSHTVNNGSFPVEEGRSCGNCSLVVKGDVNSKEIGSQFVNNTSYVNSKVPDNNNVTNFSGDGGSLNDSNNKITNPRYDSEPTKMHGSSYDKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKTGRESWKS
cccccccccccccccccEEEEEEHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEEEEccccccccccHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcccccccccEEEcccccEEcccEEEEEEEcccEEEEEEEccccEEccccccccccccEEEccccHHHHHccccccEEEEccccccccccccccccEEEcccEEEccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccc
cccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccHHcEEEEcccccccccccHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHcccccEEEEEcccEEEccccEEEEEEEEccEEEEEEEccEEEEEccccccccccEEEEEcHHHHccHHcccccEEEEEcEEEEEcccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEHHHHHHHHcccccHcccccccHHHccccccccccccccccccccHHHHHHHHHHHccccccccc
mesrkvafteqllsprrkvvsgfGLGVAATVIVFVVLLLSnslkapavsplfqgfNLVRVInnnssrvvswpfsfttavsndtgvsvsggrqadssvdlvgkpqganvsNEIAHLGNLTQEAEVGSILEANAsavsrngnfsdssadkvnfshtvnngsfpveegrscgncslvvkgdvnskeigsqfvnntsyvnskvpdnnnvtnfsgdggslndsnnkitnprydseptkmhgssydkcnifdgrwvrddskpyyppgscpyidrdfdchlngrpddgfvkwkwqpngcdipslnaTDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEIsgrrefkkkGFYAFIFEDynctvdfvsspflvressftgrngtfETLRLDLMDRTTSMYQDADVIIFNtghwwthektsrgedyyqegnfvhprLKVLEAYKRALTTWARWVdknvdhnrtkVFFRGYsvthfkggqwnsggqchketepifnvTYLAKYPSKMRALEymlpemktpVVYLNISrltdfrkdghpsiyrmeYKNDQERIAAVnaqdcshwclpgvpdtwNELLYVSLLKTGRESWKS
mesrkvafteqllsprrkvvsGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLVRVINNNSSRVVSWPFSFTTAVSNDTGVSVSGGRQADSSVDLVGKPQGANVSNEIAHLGNLTQEAEVGSILEANASAVSRNGNFSDSSADKVNFSHTVNNGSFPVEEGRSCGNCSLVVKGDVNSKEIGSQFVNNtsyvnskvpdnnnVTNFsgdggslndsnnKITNPrydseptkmhgssydKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFvgdslnrnMWESLVCIlrnsirnkkrvyeisgrrefkkkGFYAFIFEDYNCTVDFVSSPFLvressftgrngtfetLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWArwvdknvdhnRTKVFFRGYSVTHfkggqwnsggqchKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKtgreswks
MESRKVAFTEQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFnlvrvinnnssrvvsWPFSFTTAVSNDTGVSVSGGRQADSSVDLVGKPQGANVSNEIAHLGNLTQEAEVGSILEANASAVSRNGNFSDSSADKVNFSHTVNNGSFPVEEGRSCGNCSLVVKGDVNSKEIGSQFVNNTSYVNSKVPDNNNVTNFSGDGGSLNDSNNKITNPRYDSEPTKMHGSSYDKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKTGRESWKS
***********LLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLVRVINNNSSRVVSWPFSFTTAVSN************************************************************************************RSCGNCSLVVKGDVNSKEIGSQFVNNT**********************************************YDKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKT*******
*********EQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAV************************************************************************************************************************************************************************************************KCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRME**********VNAQDCSHWCLPGVPDTWNELLYVS***********
********TEQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLVRVINNNSSRVVSWPFSFTTAVSNDTGVSVSGGRQADSSVDLVGKPQGANVSNEIAHLGNLTQEAEVGSILEANASAVSRNGNFSDSSADKVNFSHTVNNGSFPVEEGRSCGNCSLVVKGDVNSKEIGSQFVNNTSYVNSKVPDNNNVTNFSGDGGSLNDSNNKITNPRYDSEPTKMHGSSYDKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKTGRESWKS
*****VAFTEQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLV*************************************************************************************************************************************************************************************DKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQ*RIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKTG******
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESRKVAFTEQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLVRVINNNSSRVVSWPFSFTTAVSNDTGVSVSGGRQADSSVDLVGKPQGANVSNEIAHLGNLTQEAEVGSILEANASAVSRNGNFSDSSADKVNFSHTVNNGSFPVEEGRSCGNCSLVVKGDVNSKEIGSQFVNNTSYVNSKVPDNNNVTNFSGDGGSLNDSNNKITNPRYDSEPTKMHGSSYDKCNIFDGRWVRDDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLKTGRESWKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
359473242623 PREDICTED: uncharacterized protein LOC10 0.986 0.934 0.576 0.0
255568860581 conserved hypothetical protein [Ricinus 0.940 0.955 0.619 0.0
356497747525 PREDICTED: uncharacterized protein LOC10 0.881 0.990 0.574 0.0
356502030535 PREDICTED: uncharacterized protein LOC10 0.894 0.986 0.573 0.0
22330347541 uncharacterized protein [Arabidopsis tha 0.9 0.981 0.561 1e-179
297739080357 unnamed protein product [Vitis vinifera] 0.605 1.0 0.801 1e-179
357485803493 hypothetical protein MTR_5g033800 [Medic 0.666 0.797 0.717 1e-176
297837415519 hypothetical protein ARALYDRAFT_475253 [ 0.854 0.971 0.552 1e-176
356565980575 PREDICTED: uncharacterized protein LOC10 0.888 0.911 0.541 1e-173
449450630553 PREDICTED: uncharacterized protein LOC10 0.652 0.696 0.714 1e-170
>gi|359473242|ref|XP_002265658.2| PREDICTED: uncharacterized protein LOC100249925 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/631 (57%), Positives = 447/631 (70%), Gaps = 49/631 (7%)

Query: 1   MESRKVAFTEQLLSPRRKVVSGFGLGVAATVIVFVVLLLSNSLKAPAVSPLFQGFNLVRV 60
           ME +K+ F+EQ+LSP+RKVVSGF LG+ A++IV  ++  + S   P    +F+GF+    
Sbjct: 1   MEWKKLGFSEQILSPKRKVVSGFALGLGASLIVLTIVSFNTSFNVP----MFRGFSNFGA 56

Query: 61  INNNSSRVVSWPFSFTTAVSNDTGVSV------------SGGRQADSS-------VDLVG 101
            N++ +       S +++ ++ T  ++              GR  DS+       +D  G
Sbjct: 57  SNSSLASWSFSFSSTSSSTASPTNATLDFHDSADFKQGTEDGRVVDSTPQASLSGMDKDG 116

Query: 102 KPQGANVSNEIAHLGNLTQEAEVGSIL----------EANASAVSRNGNFSDSSADKV-- 149
            P G  +  E  HLGN ++  + GS             A+AS  +   + S+S+ + +  
Sbjct: 117 DPLG--IVLEKTHLGNTSEMVKNGSFTVDGGWIPETTHADASGTATKASLSNSNVEGMTS 174

Query: 150 ------NFSHTVNNGSFPVEEGRSCGNCSLVVKGDVNSKEI---GSQFVNNTSYVNSKV- 199
                 N S  VNNGS P EEG   G   L   G+ +  +I    +  V N SY      
Sbjct: 175 DMAILGNSSEMVNNGSSPGEEGTVIGKTGL--GGNTSDGKIFVAENNNVGNLSYSGEYTK 232

Query: 200 PDNNNVTNFSGDGGSLNDSNNKITNPRYDSEPTKMHGSSYDKCNIFDGRWVRDDSKPYYP 259
           P     +  +G+      +NNKIT   Y S+  KM  S Y  C+IFDGRWVRDDSKPYYP
Sbjct: 233 PPTEEESGTAGNDAGKATTNNKITATHYHSQLKKMPNSFYGGCDIFDGRWVRDDSKPYYP 292

Query: 260 PGSCPYIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLN 319
            GSCPYIDRDFDCHLNGRPDD ++KW+WQPNGCDIPSLNATDFLERLRGKKL+FVGDSLN
Sbjct: 293 AGSCPYIDRDFDCHLNGRPDDDYLKWRWQPNGCDIPSLNATDFLERLRGKKLIFVGDSLN 352

Query: 320 RNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESS 379
           RNMWES+VCILR+S+ +KKRVYEISGR+EFKKKGFYAF FEDYNC+VDFV++PFLV+ESS
Sbjct: 353 RNMWESMVCILRHSVEDKKRVYEISGRKEFKKKGFYAFRFEDYNCSVDFVNAPFLVQESS 412

Query: 380 FTGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLK 439
           F GRN TFETLRLD MD++T+ + DAD+I+FNTGHWWTHEKTSRGE YYQEGN+VHPRLK
Sbjct: 413 FNGRNRTFETLRLDEMDKSTTTFHDADIIVFNTGHWWTHEKTSRGEYYYQEGNYVHPRLK 472

Query: 440 VLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTY 499
           VL+AY +ALTTWARWVDKN++ N T+VFFRGYS+THFKGGQWNSGGQCHKE EPIFN  +
Sbjct: 473 VLKAYTKALTTWARWVDKNINSNMTQVFFRGYSITHFKGGQWNSGGQCHKEVEPIFNEAF 532

Query: 500 LAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQD 559
           + KYPSKMRALE +L  M+TPV YLN+SRLTD+RKDGHPSIYR EYK  +E IAAV++QD
Sbjct: 533 IRKYPSKMRALEPVLQMMRTPVTYLNVSRLTDYRKDGHPSIYRKEYKTVEEEIAAVHSQD 592

Query: 560 CSHWCLPGVPDTWNELLYVSLLKTGRESWKS 590
           CSHWCLPGVPDTWNELLY SLL+ GR SW S
Sbjct: 593 CSHWCLPGVPDTWNELLYASLLQIGRGSWGS 623




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568860|ref|XP_002525401.1| conserved hypothetical protein [Ricinus communis] gi|223535364|gb|EEF37039.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356497747|ref|XP_003517720.1| PREDICTED: uncharacterized protein LOC100804622 [Glycine max] Back     alignment and taxonomy information
>gi|356502030|ref|XP_003519825.1| PREDICTED: uncharacterized protein LOC100801114 [Glycine max] Back     alignment and taxonomy information
>gi|22330347|ref|NP_176278.2| uncharacterized protein [Arabidopsis thaliana] gi|17979149|gb|AAL49770.1| unknown protein [Arabidopsis thaliana] gi|22136764|gb|AAM91701.1| unknown protein [Arabidopsis thaliana] gi|332195612|gb|AEE33733.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297739080|emb|CBI28569.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357485803|ref|XP_003613189.1| hypothetical protein MTR_5g033800 [Medicago truncatula] gi|355514524|gb|AES96147.1| hypothetical protein MTR_5g033800 [Medicago truncatula] Back     alignment and taxonomy information
>gi|297837415|ref|XP_002886589.1| hypothetical protein ARALYDRAFT_475253 [Arabidopsis lyrata subsp. lyrata] gi|297332430|gb|EFH62848.1| hypothetical protein ARALYDRAFT_475253 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356565980|ref|XP_003551213.1| PREDICTED: uncharacterized protein LOC100811395 [Glycine max] Back     alignment and taxonomy information
>gi|449450630|ref|XP_004143065.1| PREDICTED: uncharacterized protein LOC101210768 [Cucumis sativus] gi|449494592|ref|XP_004159591.1| PREDICTED: uncharacterized LOC101210768 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
TAIR|locus:2036631541 TBL2 "AT1G60790" [Arabidopsis 0.788 0.859 0.634 5.1e-177
TAIR|locus:2170184608 TBR [Arabidopsis thaliana (tax 0.932 0.904 0.441 7e-125
TAIR|locus:2088659556 TBL1 "AT3G12060" [Arabidopsis 0.749 0.794 0.511 7.2e-123
TAIR|locus:2155874457 TBL4 "AT5G49340" [Arabidopsis 0.608 0.785 0.544 1.6e-111
TAIR|locus:2149947485 TBL5 "AT5G20590" [Arabidopsis 0.572 0.696 0.508 4.4e-107
TAIR|locus:2096094475 TBL6 "AT3G62390" [Arabidopsis 0.594 0.738 0.498 1.2e-99
TAIR|locus:2182157464 TBL11 "TRICHOME BIREFRINGENCE- 0.567 0.721 0.457 1.8e-85
TAIR|locus:2080389469 TBL10 "TRICHOME BIREFRINGENCE- 0.569 0.716 0.46 2.4e-83
TAIR|locus:2080767427 TBL8 "AT3G11570" [Arabidopsis 0.577 0.798 0.427 7.9e-78
TAIR|locus:2037498359 TBL42 "TRICHOME BIREFRINGENCE- 0.538 0.885 0.418 9.6e-73
TAIR|locus:2036631 TBL2 "AT1G60790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1617 (574.3 bits), Expect = 5.1e-177, Sum P(2) = 5.1e-177
 Identities = 309/487 (63%), Positives = 368/487 (75%)

Query:   107 NVSNEIAHLGNLTQEAEVGSILEANASAVSRNGNFSDSSADKVNFSHTVNNGSFPVEEGR 166
             N   E+ +L +   + +V S +  +A   S+N   S+ S  KV    + ++G      G 
Sbjct:    72 NEKPEVVNLTDKVPDVKVPSFVVPDAG--SKNTTLSEES--KVP---SFDSGQ---RSGE 121

Query:   167 SCGNCSLVVKGDVNSKEIGSQFVNNTSYVNSKVPDNNNVTNFSGDGGSLNDSNNKITNPR 226
             +  N SL  +G  N      Q   NT   N+     N+ +  S  GG      N  T+  
Sbjct:   122 TVKNSSLAEEG--NGSVADDQ---NTLEANATTSVGNSSSLVSDLGGRFVVPAN--TSKE 174

Query:   227 YDSEPTKMHGSSYDKCNIFDGRWVR--DDSKPYYPPGSCPYIDRDFDCHLNGRPDDGFVK 284
               S        SY+ C+I+DG WVR  D++ PYYPPGSCPYIDRDF+CH NGRPDD +VK
Sbjct:   175 NGSVTEDRSRGSYEDCDIYDGSWVRADDETMPYYPPGSCPYIDRDFNCHANGRPDDAYVK 234

Query:   285 WKWQPNGCDIPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEIS 344
             W+WQPNGCDIP LN TDFLE+LRGKKLVFVGDS+NRNMWESL+CILR+S+++KKRVYEIS
Sbjct:   235 WRWQPNGCDIPRLNGTDFLEKLRGKKLVFVGDSINRNMWESLICILRHSLKDKKRVYEIS 294

Query:   345 GRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGT-FETLRLDLMDRTTSMYQ 403
             GRREFKKKGFYAF FEDYNCTVDFV SPF VRESSF G NGT  ETLRLD+MD+TTSMY+
Sbjct:   295 GRREFKKKGFYAFRFEDYNCTVDFVGSPFFVRESSFKGVNGTTLETLRLDMMDKTTSMYR 354

Query:   404 DADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNR 463
             DAD++IFNTGHWWTH+KT  GE+YYQEGN V+PRLKVLEAYKRAL TWA+WVDKN+D ++
Sbjct:   355 DADILIFNTGHWWTHDKTKLGENYYQEGNVVYPRLKVLEAYKRALITWAKWVDKNIDRSQ 414

Query:   464 TKVFFRGYSVTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPE-MKTPVV 522
             T + FRGYSVTHF+GG WNSGGQCHKETEPIFN +YLAKYPSKM+ALEY+L + MKTPV+
Sbjct:   415 THIVFRGYSVTHFRGGPWNSGGQCHKETEPIFNTSYLAKYPSKMKALEYILRDTMKTPVI 474

Query:   523 YLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSLLK 582
             Y+NISRLTDFRKDGHPSIYRM Y+ ++E+  AV+ QDCSHWCLPGVPDTWN+LLYVSLLK
Sbjct:   475 YMNISRLTDFRKDGHPSIYRMVYRTEKEKREAVSHQDCSHWCLPGVPDTWNQLLYVSLLK 534

Query:   583 TGRES-W 588
              G  S W
Sbjct:   535 AGLASKW 541


GO:0008150 "biological_process" evidence=ND
TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149947 TBL5 "AT5G20590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080389 TBL10 "TRICHOME BIREFRINGENCE-LIKE 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080767 TBL8 "AT3G11570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00002752001
SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (630 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
pfam13839270 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera 1e-106
PLN02629387 PLN02629, PLN02629, powdery mildew resistance 5 1e-105
pfam1441655 pfam14416, PMR5N, PMR5 N terminal Domain 2e-26
>gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
 Score =  320 bits (823), Expect = e-106
 Identities = 133/290 (45%), Positives = 180/290 (62%), Gaps = 23/290 (7%)

Query: 294 IPSLNATDFLERLRGKKLVFVGDSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKG 353
           +P  +A  FLERLRGK++VFVGDSL+RN WESLVC+L      K +  E  GR       
Sbjct: 1   LPRFDAQQFLERLRGKRVVFVGDSLSRNQWESLVCLLSQVEPPKGKTLERDGR------- 53

Query: 354 FYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLMD-RTTSMYQDADVIIFNT 412
            + F F+DYN T++F  SPFLV   +          L+LD +D + + ++  ADV++FN+
Sbjct: 54  LFRFRFKDYNVTIEFYWSPFLVESDNAE---EGKRVLKLDSIDEKWSKLWPGADVLVFNS 110

Query: 413 GHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYS 472
           GHWW H K   G DY Q+ N+    +  L+AY++AL TWA+WVD N+  ++T+VFFR +S
Sbjct: 111 GHWWLHRKVYIGWDYCQKSNYKE--MGFLDAYRKALETWAKWVDVNLPPSKTRVFFRTFS 168

Query: 473 VTHFKGGQWNSGGQCHKETEPIFNVTYLAKYPSKMRALEYML--PEMKTPVVYLNISRLT 530
             HF+GG+WN+GG C+ ETEP+    Y    P  +  +  +L    MKTPV  L+I+ L+
Sbjct: 169 PVHFEGGEWNTGGSCY-ETEPLLGSEYKGLTPEMIDIVNEVLSRAAMKTPVKLLDITLLS 227

Query: 531 DFRKDGHPSIYRMEYKNDQERIAAVNAQDCSHWCLPGVPDTWNELLYVSL 580
            +RKDGHPS+YR      +E       QDC HWCLPGVPDTWNELL   L
Sbjct: 228 QYRKDGHPSVYRKPGPPKKE-------QDCLHWCLPGVPDTWNELLLALL 270


The PC-Esterase family is comprised of Cas1p, the Homo sapiens C7orf58, Arabidopsis thaliana PMR5 and a group of plant freezing resistance/coldacclimatization proteins typified by Arabidopsis thaliana ESKIMO1, animal FAM55D proteins, and animal FAM113 proteins. The PC-Esterase family has features that are both similar and different from the canonical GDSL/SGNH superfamily. The members of this family are predicted to have Acyl esterase activity and predicted to modify cell-surface biopolymers such as glycans and glycoproteins. The Cas1p protein has a Cas1_AcylT domain, in addition, with the opposing acyltransferase activity. The C7orf58 family has a ATP-Grasp domain fused to the PC-Esterase and is the first identified secreted tubulin-tyrosine ligase like enzyme in eukaryotes. The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich potential sugar binding domain followed by the PC-Esterase domain. Length = 270

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 Back     alignment and domain information
>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 590
PLN02629387 powdery mildew resistance 5 100.0
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 100.0
PF1441655 PMR5N: PMR5 N terminal Domain 99.89
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 97.49
cd01838199 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hyd 93.75
COG2845354 Uncharacterized protein conserved in bacteria [Fun 92.62
cd01829200 SGNH_hydrolase_peri2 SGNH_peri2; putative periplas 92.47
>PLN02629 powdery mildew resistance 5 Back     alignment and domain information
Probab=100.00  E-value=1.2e-107  Score=863.70  Aligned_cols=333  Identities=41%  Similarity=0.916  Sum_probs=298.3

Q ss_pred             CCCCCCccccCCcccCCCCCCCCCCCCC-CCCCCcCccCCCCCCCccceeeeecCCCCCCCCCHHHHHHHHcCCeEEEEe
Q 007771          237 SSYDKCNIFDGRWVRDDSKPYYPPGSCP-YIDRDFDCHLNGRPDDGFVKWKWQPNGCDIPSLNATDFLERLRGKKLVFVG  315 (590)
Q Consensus       237 ~~~~~CDlf~G~WV~D~s~PlY~~~sCP-~I~~~~nC~~NGRPD~~Yl~WRWQP~gC~LPrFDa~~FLe~LRGKrL~FVG  315 (590)
                      ...+.||||+|+||+|+++|+|++.+|| ||+++|||++|||||.+|++|||||++|+||||||.+|||+||||||||||
T Consensus        48 ~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVG  127 (387)
T PLN02629         48 ANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVG  127 (387)
T ss_pred             CCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEec
Confidence            3447899999999999999999999999 999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHhhccccccceEeecCccceeeccceEEEeeccceEEEEEeccccccccccCCCCCceeeeeeccc
Q 007771          316 DSLNRNMWESLVCILRNSIRNKKRVYEISGRREFKKKGFYAFIFEDYNCTVDFVSSPFLVRESSFTGRNGTFETLRLDLM  395 (590)
Q Consensus       316 DSL~Rnq~eSLlCLL~~~v~~~~~v~e~sg~~~~k~~g~~~~rf~dyNvTV~fywsPfLV~~~~~~~~~g~~~~l~LD~i  395 (590)
                      |||+|||||||+|||+++++...+.+.       +..+...|+|++||+||+|||+||||+.+...    ..+.++||++
T Consensus       128 DSL~RNQ~eSLvClL~~~~p~~~~~~~-------~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~----~~~~l~LD~i  196 (387)
T PLN02629        128 DSLGRNQWESLICLISSSVPSTRTQMS-------RGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ----GKRVLKLEEI  196 (387)
T ss_pred             cccchhHHHHHHHHhhccCCCCceeee-------cCCceEEEEeccCCEEEEEEecceEEeeecCC----CceeEEecCc
Confidence            999999999999999998765432221       12235689999999999999999999876432    2467999999


Q ss_pred             ccccccCCCccEEEEeccccccccccCCCccccccCcceecCccHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecccCC
Q 007771          396 DRTTSMYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTH  475 (590)
Q Consensus       396 D~~~~~~~~~DVLVfNTGhWw~~~k~~~~~~yfe~G~~v~~~m~~~~AyrkALrT~arwVd~~id~~kt~VFfRT~SP~H  475 (590)
                      |..+..|.++|||||||||||.+.+..+++.||+.|+.++++|++..||++||+||++||++++++.+|+|||||+||+|
T Consensus       197 d~~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~SP~H  276 (387)
T PLN02629        197 SGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTH  276 (387)
T ss_pred             chhhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCccc
Confidence            98888999999999999999999888888899999999999999999999999999999999999989999999999999


Q ss_pred             CCCCCCCCCC-----CCCCcccccccccccccCchHHHHHHHHhcccCCceEEeecccccCCCcCCCCccccccccchhh
Q 007771          476 FKGGQWNSGG-----QCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQE  550 (590)
Q Consensus       476 FegG~Wn~GG-----~C~~~T~Pl~~~~~~~~~~~~~r~ie~vl~~~k~~V~lLDIT~LS~~R~DgHPs~Y~~~~~~~~~  550 (590)
                      |+||+||+||     +|+++|+|+.++.+.+....+|+++|++++.++.+|++||||+||++|+|||||+|+..++.+ +
T Consensus       277 fe~g~Wn~gg~~~~~~C~~et~P~~~~~~~~~~~~~~~~ve~v~~~~~~~v~lLDIT~ls~lR~DgHPs~Y~~~~~~~-~  355 (387)
T PLN02629        277 YNPSEWSAGASTTTKNCYGETTPMSGMTYPGAYPDQMRVVDEVIRGMHNPAYLLDITLLSELRKDGHPSIYSGDLSPS-Q  355 (387)
T ss_pred             ccCCCcCCCCCCCCCCCccCCccCcCccccCcchHHHHHHHHHHHhcCCceEEEechhhhhcCCCCCcccccCCCchh-h
Confidence            9999999874     698999999877776667778889999999999999999999999999999999998654332 2


Q ss_pred             hhccCCCCCcccccCCCchhHHHHHHHHHHH
Q 007771          551 RIAAVNAQDCSHWCLPGVPDTWNELLYVSLL  581 (590)
Q Consensus       551 ~~~~~~~~DClHWCLPGvpDtWNelLya~L~  581 (590)
                      +..+..++||+||||||||||||||||++|+
T Consensus       356 ~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~  386 (387)
T PLN02629        356 RANPDRSADCSHWCLPGLPDTWNQLFYTALF  386 (387)
T ss_pred             ccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence            3334567999999999999999999999987



>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>PF14416 PMR5N: PMR5 N terminal Domain Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins Back     alignment and domain information
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 58/418 (13%), Positives = 119/418 (28%), Gaps = 112/418 (26%)

Query: 228 DSEPTKMHGSSYDKCNIF--------DGRWVRDDSKPYYPPGSCPYI----------DRD 269
           D E  +      D  ++F        D + V+D  K         +I           R 
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 270 FDCHLNGRPDDG---FV--------KWKWQP--NGCDIPSLNATDFLE---RLRGKKLVF 313
           F   L  + ++    FV        K+   P       PS+    ++E   RL     VF
Sbjct: 68  FWT-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 314 VGDSLNRNMWESLVCILRNSIRNKKR-----VYEISGRREFKKKGFYAFIFEDYNCTVDF 368
              +++R         LR ++   +      +  + G     K      +   Y      
Sbjct: 127 AKYNVSR---LQPYLKLRQALLELRPAKNVLIDGVLG---SGKTWVALDVCLSYKVQCKM 180

Query: 369 VSSPFLVRESSF---TGRNGTFETLRLDLMDRTTSMYQDADVIIFNTGHWWTHEKTSRGE 425
               F +    F        + E     +++    +    D             ++    
Sbjct: 181 ---DFKI----FWLNLKNCNSPE----TVLEMLQKLLYQIDPNW--------TSRSDHSS 221

Query: 426 DYYQEGNFVHPRLKVL---EAYKRALT----TWARWVDKNVDHN-RTKVFFRGYSVTHFK 477
           +     + +   L+ L   + Y+  L               + + +  +  R   VT F 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 478 GGQW--------NSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLP-EMKT--PVVYLNI 526
                       +S      E + +       KY    R  +  LP E+ T  P     +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL-----LKY-LDCRPQD--LPREVLTTNP---RRL 330

Query: 527 SRLTDFRKDGHPSI--YRMEYKNDQERI--AAVNAQDCSHWCLPGVPDTWNELLYVSL 580
           S + +  +DG  +   ++    +    I  +++N  +         P  + + ++  L
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---------PAEYRK-MFDRL 378


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 96.75
3dci_A232 Arylesterase; SGNH_hydrolase SUBF structural genom 93.96
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
Probab=96.75  E-value=0.0042  Score=57.80  Aligned_cols=51  Identities=20%  Similarity=0.289  Sum_probs=35.3

Q ss_pred             CCccEEEEeccccccccccCCCccccccCcceecCccHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecccCC
Q 007771          403 QDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTH  475 (590)
Q Consensus       403 ~~~DVLVfNTGhWw~~~k~~~~~~yfe~G~~v~~~m~~~~AyrkALrT~arwVd~~id~~kt~VFfRT~SP~H  475 (590)
                      ..+|+|||+.|..=..                    ...+.|++.|+.+.+.+.+.  .+.++++|-+..|..
T Consensus        73 ~~pd~Vvi~~G~ND~~--------------------~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~~~~P~~  123 (200)
T 4h08_A           73 TKFDVIHFNNGLHGFD--------------------YTEEEYDKSFPKLIKIIRKY--APKAKLIWANTTPVR  123 (200)
T ss_dssp             SCCSEEEECCCSSCTT--------------------SCHHHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCE
T ss_pred             CCCCeEEEEeeeCCCC--------------------CCHHHHHHHHHHHHHHHhhh--CCCccEEEeccCCCc
Confidence            4689999999975110                    12456888888777766543  346789999888865



>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
d2o14a2208 Hypothetical protein YxiM {Bacillus subtilis [TaxI 96.59
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 95.88
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: YxiM C-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]
Probab=96.59  E-value=0.0038  Score=56.14  Aligned_cols=141  Identities=11%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             cCCCccEEEEeccccccccccCCCccccccCcceecCccHHHHHHHHHHHHHHHHHhhcCCCCceEEEeecccCCCCCCC
Q 007771          401 MYQDADVIIFNTGHWWTHEKTSRGEDYYQEGNFVHPRLKVLEAYKRALTTWARWVDKNVDHNRTKVFFRGYSVTHFKGGQ  480 (590)
Q Consensus       401 ~~~~~DVLVfNTGhWw~~~k~~~~~~yfe~G~~v~~~m~~~~AyrkALrT~arwVd~~id~~kt~VFfRT~SP~HFegG~  480 (590)
                      ..+..|+|||..|.-          +....+.      ...+.|+..|+.+++-+.+   . ...+++-+..|. ... .
T Consensus        68 ~~~~~D~vvi~~G~N----------D~~~~~~------~~~~~~~~~l~~li~~~~~---~-~~~~vl~~~~~~-~~~-~  125 (208)
T d2o14a2          68 YIKPGDYFMLQLGIN----------DTNPKHK------ESEAEFKEVMRDMIRQVKA---K-GADVILSTPQGR-ATD-F  125 (208)
T ss_dssp             TCCTTCEEEEECCTG----------GGCGGGC------CCHHHHHHHHHHHHHHHHT---T-TCEEEEECCCCC-TTC-B
T ss_pred             hcCCCCEEEEEcCCC----------ccccccc------ccHHHHHHHHHHHHHHHHh---c-CCceeecccccc-ccc-c
Confidence            445679999998864          1111110      2356788888877665543   2 234444333332 110 0


Q ss_pred             CCCCCCCCCcccccccccccccCchHHHHHHHHhcccCCceEEeecccccCCCcCCCCccccccccchhhhhccCCCCCc
Q 007771          481 WNSGGQCHKETEPIFNVTYLAKYPSKMRALEYMLPEMKTPVVYLNISRLTDFRKDGHPSIYRMEYKNDQERIAAVNAQDC  560 (590)
Q Consensus       481 Wn~GG~C~~~T~Pl~~~~~~~~~~~~~r~ie~vl~~~k~~V~lLDIT~LS~~R~DgHPs~Y~~~~~~~~~~~~~~~~~DC  560 (590)
                           .......+     ..   .....++++++++  ..+.++|+..++....+.+-.         ..........|-
T Consensus       126 -----~~~~~~~~-----~~---~~~~~~~~~~a~~--~~v~~vD~~~~~~~~~~~~~~---------~~~~~~~~~~Dg  181 (208)
T d2o14a2         126 -----TSEGIHSS-----VN---RWYRASILALAEE--EKTYLIDLNVLSSAYFTSIGP---------ERTLGLYMDGDT  181 (208)
T ss_dssp             -----CTTSCBCC-----TT---STTHHHHHHHHHH--TTCEEECHHHHHHHHHHHHCH---------HHHHTTBCTTCS
T ss_pred             -----ccccchHH-----HH---HHHHHHHHHhhcc--CCcEEeccHHHHHHHHHHhCc---------cccccccCCCCC
Confidence                 01100001     11   1223455666654  457789987765321111000         000000112466


Q ss_pred             ccccCCCchhHHHHHHHHHHHhcCCCCC
Q 007771          561 SHWCLPGVPDTWNELLYVSLLKTGRESW  588 (590)
Q Consensus       561 lHWCLPGvpDtWNelLya~L~~~~~~~w  588 (590)
                      +|.=--| -..+-++++..|.+.+..+|
T Consensus       182 vHpn~~G-~~~~A~~i~~~lk~~g~~g~  208 (208)
T d2o14a2         182 LHPNRAG-ADALARLAVQELKRQGIAGF  208 (208)
T ss_dssp             SSBBHHH-HHHHHHHHHHHHHHTTCTTC
T ss_pred             CCCCHHH-HHHHHHHHHHHHHhcccCCC
Confidence            6653222 25667788888888877765



>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure