Citrus Sinensis ID: 007773

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
Protein Sequence
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Secondary Structure (PSIPRED)
cccccEEEcccccccccccccccccccccccccEEEEEEccccEEEEEccccccHHHHHHHHHHHccccccccEEEEccEEEccccccccccccccccEEEEEEEEcccccEEEEcccccEEEEEEcccccHHHHHHHHHHHccccccccccEEEEccEEccccccHHccccccccEEEEEEEEcccccccccccccccHHHHHHcccccccccccccEEEEEccccccccccccccccccccHHccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccccccccccccccccEEHcccccccccccccccccccccHHHEEEEcEEEEccccccccEEEEEcccccEEEEccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccEEEcccccccccccccccEEEEEEccccEEEEEEcccccHHHHHHHHHccccccccccEEEEEccHcccccccccHcccccccEEEEEEEEcccEEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHccccccccEEEEcccEcccccEHHHccccccccEEEEEEcccccEEEEccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHcccccEEcccccccEEEEEcccccEEEEEEEccccccccccccccccccEcccccccccEcccHHHHHHHHHHHccccccccHHcccHcccccccccEEEEEEccccccccccccccccccEEEHHHEccccccHHHcccccccHHHEEEEEEEEEEEEEcccccccEEEEEccccEEEEEEccccccccccccccccEEEEcccccccccHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
msmacvalspvleeslnfpgnfthrpeklsndSILIFLSVggsvipmrvmesdsIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQelicdgeeleDQRLITDICKRNEAVIHLLVRKSAkvrakpvqkdFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQndllleplivesnfkLPLMIKRLISSTvdglergnepipssegsggayfmqdssgqkyisvfkpmdeepmsvnnprglpisvdgeglkkgtragEGALREVAAYILDhprdatyslhdeergfagvpptvMVRClhkgfnhpngykhdlenvkigSLQMFVENVgsceemgprafpvdevhkISVLDIRlantdrhagnilvskdeggqiklvpidhgyclpysfedctfdwlywpqarqpyspetINYINALDAEKDIELLkfhgwdippeCARVLRISTMLLKkgvdrgltpfdigcimcrktlkdESVIEQIVREAQdavlpgtsedgfLESVASIMDRhlddltpqggqve
Flexible Loop (DISEMBL)
MSMACVALSPVLEESLNFPGNFTHrpeklsndSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFhvergrnvgyvKQQIakkgrefvdlknqelicdgeeleDQRLITDICKRNEAVIHLlvrksakvrakpvqkdfeVSIEatelnekgadvvGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLantdrhagnilvskdeggqiKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLlkkgvdrgltpfdIGCIMCRKTLKDESVIEQIVREaqdavlpgtsEDGFLESVASIMDRHLddltpqggqve
Low Complexity Region (SEG)
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Disordered region (IsUnstruct)
*****VALSPVL***LNFPGNFT****KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTV********************************************************************ALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVL*******************************
Disordered Region (DISOPRED)
******A*SPVLE**********HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQD*****TSE*GFLESVASIMDRHL***********
Disordered Region (DISEMBL)
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Disordered Region (DISPRO)
**MACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATEL************FETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTPQGGQVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	590	2.2.26 [Sep-21-2011]
Q9C671	630	Probable phosphatidylinos	no	no	0.494	0.463	0.383	1e-54
P0CG54	311	Polyubiquitin-B OS=Cavia	yes	no	0.262	0.498	0.345	3e-15
P22589	229	Polyubiquitin OS=Phytopht	N/A	no	0.335	0.864	0.312	7e-15
P0CG70	305	Polyubiquitin OS=Neurospo	N/A	no	0.245	0.475	0.355	1e-14
P0CH28	690	Polyubiquitin-C OS=Bos ta	yes	no	0.261	0.223	0.341	2e-14
P42740	457	Polyubiquitin OS=Aglaotha	N/A	no	0.245	0.317	0.348	2e-14
P0CG69	763	Polyubiquitin OS=Drosophi	yes	no	0.257	0.199	0.339	3e-14
P69315	305	Polyubiquitin (Fragment)	N/A	no	0.245	0.475	0.355	3e-14
P0CG76	381	Polyubiquitin-A OS=Dictyo	no	no	0.245	0.380	0.355	4e-14
P0CG81	381	Polyubiquitin-H OS=Dictyo	no	no	0.245	0.380	0.355	4e-14

>sp|Q9C671|P4K2B_ARATH Probable phosphatidylinositol 4-kinase type 2-beta At1g26270 OS=Arabidopsis thaliana GN=At1g26270 PE=1 SV=1

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/318 (38%), Positives = 180/318 (56%), Gaps = 26/318 (8%)

Query: 254 MIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGL 313
            ++++       +++G +P+  + G GGAY+ ++S G+  +++ KP DEEP + NNP+G 
Sbjct: 147 FVRQMAKDITKAVKKGIDPVAVNSGLGGAYYFKNSRGES-VAIVKPTDEEPYAPNNPKGF 205

Query: 314 PISVDGE-GLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHK 372
                G+ GLK+  R GE   REVAAY+LD            +  FA VPPT +V+  H 
Sbjct: 206 VGKALGQPGLKRSVRVGETGYREVAAYLLD------------KEHFANVPPTALVKITHS 253

Query: 373 GFNHPNGYKHD--LENV---KIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLAN 427
            FN  +G K    +E +   KI SLQ F+ +     E G   FPV  VH+I +LDIR+ N
Sbjct: 254 IFNVNDGVKASKPMEKMLVSKIASLQQFIPHDYDASEHGTSNFPVSAVHRIGILDIRILN 313

Query: 428 TDRHAGNILVSKDEG----GQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETIN 483
           TDRH+GN+LV K +G    GQ++LVPIDHG CLP + ED  F+W++WPQA  P+S + + 
Sbjct: 314 TDRHSGNLLVKKLDGDGMFGQVELVPIDHGLCLPETLEDPYFEWIHWPQASIPFSEDELK 373

Query: 484 YINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTL-- 541
           YI  LD   D E+L+     +     RVL + T+ LK+    GL   +IG +M R+    
Sbjct: 374 YIANLDPLGDCEMLRRELPMVREASLRVLVLCTIFLKEAAANGLCLAEIGEMMTREVRPG 433

Query: 542 -KDESVIEQIVREAQDAV 558
            ++ S IE +  EA   +
Sbjct: 434 DEEPSEIEVVCLEAMSLI 451

The phosphorylation of phosphatidylinositol (PI) to PI4P is the first committed step in the generation of phosphatidylinositol 4,5-bisphosphate (PIP2), a precursor of the second messenger inositol 1,4,5-trisphosphate (InsP3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 6EC: 7

>sp|P0CG54|UBB_CAVPO Polyubiquitin-B OS=Cavia porcellus GN=UBB PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 4/159 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 155 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 213

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 271

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKPV 193
           I  G++LED R ++D   + E+ +HL++R    V A P+
Sbjct: 272 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVYASPI 310

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Cavia porcellus (taxid: 10141)

>sp|P22589|UBIQP_PHYIN Polyubiquitin OS=Phytophthora infestans PE=1 SV=2

 Score = 82.8 bits (203), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 13/211 (6%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SDSI +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE   ++  VKQ+I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR-------AKPVQKDFEVSIEATELN 207
           I  G++LED R ++D   + E+ +HL++R    ++        K +  D E S     + 
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVK 179

Query: 208 EKGADVVG--EHQFETLFMGYQIRERKLLQN 236
           +K  D  G    Q   +F G Q+ + + L +
Sbjct: 180 QKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 210

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Phytophthora infestans (taxid: 4787)

>sp|P0CG70|UBI4P_NEUCR Polyubiquitin OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ubi-4 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VKQ+I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKQKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 535 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 593

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 594 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 651

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRAKP 192
           I  G++LED R ++D   + E+ +HL++R    V + P
Sbjct: 652 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVLSSP 689

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Bos taurus (taxid: 9913)

>sp|P42740|UBIQP_AGLNE Polyubiquitin OS=Aglaothamnion neglectum PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 155 IFVKTITGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 213

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVKTKIQDK--EGIPPDQQRL 271

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 272 IFAGKQLEDGRTLSDYNLQKESTLHLVLR 300

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Aglaothamnion neglectum (taxid: 2765)

>sp|P0CG69|UBIQP_DROME Polyubiquitin OS=Drosophila melanogaster GN=Ubi-p63E PE=3 SV=1

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 4/156 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 611 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 669

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 670 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 727

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVRA 190
           I  G++LED R ++D   + E+ +HL++R    ++A
Sbjct: 728 IFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIQA 763

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Drosophila melanogaster (taxid: 7227)

>sp|P69315|UBIQP_LINUS Polyubiquitin (Fragment) OS=Linum usitatissimum PE=3 SV=2

 Score = 80.5 bits (197), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IFL ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 44  IFLKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LADYNI 102

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 103 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQQRL 160

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R + D   + E+ +HL++R
Sbjct: 161 IFAGKQLEDGRTLADYNIQKESTLHLVLR 189

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Linum usitatissimum (taxid: 4006)

>sp|P0CG76|UBIQA_DICDI Polyubiquitin-A OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE   N+  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Dictyostelium discoideum (taxid: 44689)

>sp|P0CG81|UBIQH_DICDI Polyubiquitin-H OS=Dictyostelium discoideum GN=ubqH PE=1 SV=1

 Score = 80.5 bits (197), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/149 (35%), Positives = 82/149 (55%), Gaps = 4/149 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE   N+  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDK--EGIPPDQQRL 119

Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	590
255551301	583	ubiquitin, putative [Ricinus communis] g	0.981	0.993	0.741	0.0
225455384	585	PREDICTED: probable phosphatidylinositol	0.988	0.996	0.716	0.0
356509263	583	PREDICTED: uncharacterized protein LOC10	0.983	0.994	0.685	0.0
255564699	585	protein with unknown function [Ricinus c	0.972	0.981	0.662	0.0
15237921	574	phosphatidylinositol 3- and 4-kinase fam	0.962	0.989	0.657	0.0
225426304	583	PREDICTED: uncharacterized protein LOC10	0.979	0.991	0.654	0.0
297812587	574	phosphatidylinositol 3-and 4-kinase fami	0.952	0.979	0.649	0.0
357463917	593	Phosphatidylinositol 4-kinase type 2-bet	0.969	0.964	0.647	0.0
224053771	583	predicted protein [Populus trichocarpa]	0.981	0.993	0.622	0.0
297828377	566	phosphatidylinositol 3-and 4-kinase fami	0.949	0.989	0.631	0.0

>gi|255551301|ref|XP_002516697.1| ubiquitin, putative [Ricinus communis] gi|223544192|gb|EEF45716.1| ubiquitin, putative [Ricinus communis]

 Score =  880 bits (2273), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/584 (74%), Positives = 494/584 (84%), Gaps = 5/584 (0%)

Query: 3   MACVALSPVLEESLNFPGNFT--HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MA VALS V EESLN   N    H P + SNDSILIFLSV GS+IPM VMESDSIASVKL
Sbjct: 1   MASVALSTVNEESLNLHCNLARWHGPPR-SNDSILIFLSVAGSLIPMHVMESDSIASVKL 59

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQ+  GFFVKKQKLVFEGRELARSNS VRDYG+ADG VLHLVLRLSDLQAITV TVCGK
Sbjct: 60  RIQASKGFFVKKQKLVFEGRELARSNSHVRDYGVADGKVLHLVLRLSDLQAITVRTVCGK 119

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            F+FHV+RGRNVGYVKQQI+KKG+ F +L +QELICDGEELEDQR+I DICK N++VIHL
Sbjct: 120 EFKFHVQRGRNVGYVKQQISKKGKGF-NLIDQELICDGEELEDQRIIDDICKSNDSVIHL 178

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
           LVRKSAKVR K + +DFE+SIEA +L++    VVGEHQ + L + Y+  +RK L  D +L
Sbjct: 179 LVRKSAKVRTKTIDRDFELSIEALDLSDSADCVVGEHQKQALALEYRALDRKPLLQDFIL 238

Query: 241 EPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPM 300
           EPLIV    +LPL++K+LI+ST  GLERGNEPI SSEGSGGAYFMQDSSG KY+SVFKP+
Sbjct: 239 EPLIVNFKVELPLVLKKLINSTSLGLERGNEPIRSSEGSGGAYFMQDSSGHKYVSVFKPV 298

Query: 301 DEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAG 360
           DEEPM+VNNPRGLP+SV+GEGLKKGTR G GALREVAAYILD+P++      D+E+GFAG
Sbjct: 299 DEEPMAVNNPRGLPVSVNGEGLKKGTRVGGGALREVAAYILDYPKNGPRLSWDDEKGFAG 358

Query: 361 VPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISV 420
           VPPTVM++CLHK FNHP+GYK  L+N+KIGSLQMFVEN GSCE+MGPRAFPVDEVHKISV
Sbjct: 359 VPPTVMIKCLHKAFNHPDGYKRSLKNIKIGSLQMFVENSGSCEDMGPRAFPVDEVHKISV 418

Query: 421 LDIRLANTDRHAGNILVSKDEG-GQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSP 479
           LDIRLAN DRHAGNILV+KD   G+I L+PIDHGYCLP +FEDCTFDWLYWPQA+QPY  
Sbjct: 419 LDIRLANADRHAGNILVTKDGNEGKIALIPIDHGYCLPENFEDCTFDWLYWPQAQQPYPK 478

Query: 480 ETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK 539
           E ++YI  LDAE+DI LLKFHGWDIPP CAR LRISTMLLKKG  RGLTPF IG IMCR+
Sbjct: 479 EILDYIKDLDAEQDIALLKFHGWDIPPSCARTLRISTMLLKKGAKRGLTPFAIGSIMCRE 538

Query: 540 TLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLT 583
           T+K ES IE+I++EAQDAVLP +SE  FLE VASIMD  LD+L+
Sbjct: 539 TMKKESAIERIIQEAQDAVLPESSEAAFLECVASIMDHRLDELS 582

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455384|ref|XP_002277933.1| PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Vitis vinifera]

 Score =  864 bits (2232), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/586 (71%), Positives = 500/586 (85%), Gaps = 3/586 (0%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A V++SPV E+S NFP  FT R     ++SILI+L+VGGSVIPM V+ESDSIASVK 
Sbjct: 1   MSIASVSVSPVCEDSPNFPCYFTDRCGPCLSNSILIYLTVGGSVIPMHVLESDSIASVKR 60

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           +IQ++ G FVK QKLVFEGRELAR+NSRV+DYG+ DGNVLHLVLRLSDLQAITV +VCGK
Sbjct: 61  KIQTFKGSFVKMQKLVFEGRELARNNSRVQDYGVTDGNVLHLVLRLSDLQAITVRSVCGK 120

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
             EF VER RNVGYVKQQIAK G+ F DLK+QEL CDGEELEDQRLI DICK+N+ VIHL
Sbjct: 121 ELEFQVERSRNVGYVKQQIAKTGKGFFDLKDQELTCDGEELEDQRLIHDICKKNDVVIHL 180

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVG--EHQFETLFMGYQIRERKLLQNDL 238
           L+ +SAKVR KP++KDF+VSI A++L++K  DVV   E+Q+ T     ++ +RK L +D+
Sbjct: 181 LICRSAKVRTKPIKKDFKVSIVASDLSDKRDDVVDKEEYQWRTQSKEPEVVDRKSLLSDV 240

Query: 239 LLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFK 298
           LLEPLIV  N +L  ++K LI+ST+DGL RGN+PI SSEGSGG YFMQDSSG K+ISVFK
Sbjct: 241 LLEPLIVNPNIELSSVVKELITSTIDGLNRGNQPIRSSEGSGGVYFMQDSSGLKHISVFK 300

Query: 299 PMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGF 358
           P+DEEPM+VNNP GLP+S+DGEGLKKGTR GEGALREVAAYILDHPR   +S  ++ +GF
Sbjct: 301 PIDEEPMAVNNPHGLPLSMDGEGLKKGTRVGEGALREVAAYILDHPRSGPHSFCNK-KGF 359

Query: 359 AGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKI 418
           AGVPPTVMV+CLH GFNHP GY++  +N+KIGSLQMF++N GSCE+MGPRAFPVDEVHKI
Sbjct: 360 AGVPPTVMVKCLHGGFNHPEGYEYSPKNIKIGSLQMFMKNQGSCEDMGPRAFPVDEVHKI 419

Query: 419 SVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYS 478
           +VLDIRLAN DRHAGNILVSK+  GQ+ L+PIDHGYCLP +FEDCTFDWLYWPQA+ PYS
Sbjct: 420 TVLDIRLANADRHAGNILVSKEGEGQLVLIPIDHGYCLPENFEDCTFDWLYWPQAKIPYS 479

Query: 479 PETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCR 538
           P+TI+YI +LDAEKDIELLKFHGW++P ECAR LRISTMLLKKG +RGLTPF IG IMCR
Sbjct: 480 PDTIDYIRSLDAEKDIELLKFHGWNLPLECARTLRISTMLLKKGAERGLTPFIIGSIMCR 539

Query: 539 KTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTP 584
           +TLK ESV+EQIV+EAQ++VLPGTSE  FLE+V+ IMD  LD+L+P
Sbjct: 540 ETLKKESVMEQIVQEAQESVLPGTSEAAFLEAVSMIMDCRLDELSP 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509263|ref|XP_003523370.1| PREDICTED: uncharacterized protein LOC100812724 [Glycine max]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/585 (68%), Positives = 486/585 (83%), Gaps = 5/585 (0%)

Query: 3   MACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRI 62
           MACVAL PV EESLN  G FT        +SILI+L+VGGSVIPM +M++DSIASVKLRI
Sbjct: 1   MACVALHPVCEESLN-RGEFTSCFSPHLRESILIYLTVGGSVIPMHIMKTDSIASVKLRI 59

Query: 63  QSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVF 122
           Q++ GFFVKKQKLVFEG+ELAR+ S +RDYG+ DGNVLHLVLRLSDL+AITV T+CGK F
Sbjct: 60  QTFKGFFVKKQKLVFEGKELARNRSCIRDYGVGDGNVLHLVLRLSDLKAITVRTMCGKEF 119

Query: 123 EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182
             +VE+ R+VGYVKQQIAKKG+ F+D K+QELIC+GEELEDQRLI DICK N+AVIH LV
Sbjct: 120 GLYVEKSRSVGYVKQQIAKKGQGFLDHKDQELICEGEELEDQRLIEDICKDNDAVIHFLV 179

Query: 183 RKS-AKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLE 241
           RKS AKVR KPV KDFE+SIEA+ ++    ++  + Q  ++ +  ++ ER  L  D +LE
Sbjct: 180 RKSDAKVRTKPVDKDFELSIEASYVHNLVPNLHAD-QLGSVSVTNEVLERSQLTRDFVLE 238

Query: 242 PLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMD 301
           P+I+ SN K+PL+I+ LI ST +GLE+G +PI SSEGSGGAY MQDSSG KY+SVFKP+D
Sbjct: 239 PIIMNSNIKIPLVIQELIKSTSEGLEKGCKPIQSSEGSGGAYLMQDSSGLKYVSVFKPID 298

Query: 302 EEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLH-DEERGFAG 360
           EEPM++NNPRGLP+S DGEGLKKGTR G+GALREVAAYILDHPR    S + +EE GFAG
Sbjct: 299 EEPMAINNPRGLPVSEDGEGLKKGTRVGQGALREVAAYILDHPRKGPRSYYNNEEGGFAG 358

Query: 361 VPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISV 420
           VPPTVMV+CL KGF++   Y++D  NVKIGSLQMF+ N+GSCE+MGP AFPV+EVHKISV
Sbjct: 359 VPPTVMVKCLDKGFHNIEDYQNDSANVKIGSLQMFMRNIGSCEDMGPSAFPVEEVHKISV 418

Query: 421 LDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSP 479
           LDIRL N DRHAGNIL+++D E GQ  L+PIDHGYCLP SFEDCTFDWLYWPQA++PYSP
Sbjct: 419 LDIRLVNADRHAGNILIARDGEDGQTILIPIDHGYCLPESFEDCTFDWLYWPQAKEPYSP 478

Query: 480 ETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK 539
           +TI+YI +LDAE+DI+LLKFHGWD+PP+CA++LRISTMLL KG +RGLTPF +G IMCR+
Sbjct: 479 DTIDYIKSLDAEEDIKLLKFHGWDLPPKCAQILRISTMLLLKGAERGLTPFALGSIMCRE 538

Query: 540 TLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLTP 584
           TLK +SVIEQIV EA++A  PG SE  FL+ V+ +MD HLD+L P
Sbjct: 539 TLKKKSVIEQIVEEAEEAAFPGASEAAFLDLVSVVMDSHLDELFP 583

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564699|ref|XP_002523344.1| protein with unknown function [Ricinus communis] gi|223537432|gb|EEF39060.1| protein with unknown function [Ricinus communis]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/590 (66%), Positives = 459/590 (77%), Gaps = 16/590 (2%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS A VALSP+    +     F+ +P   S++ ILI+LSVG SVIPMRV+ SDSI SVKL
Sbjct: 1   MSSAGVALSPIQNGVVLPVDYFSAQPS--SDEYILIYLSVGRSVIPMRVLGSDSIESVKL 58

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQS  GF VK QKLV  GREL+RSNS +RDYG+ DGNVLHLVLRLSDLQ I V T  GK
Sbjct: 59  RIQSCKGFVVKNQKLVCGGRELSRSNSLIRDYGVTDGNVLHLVLRLSDLQVIKVKTTSGK 118

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIH 179
            + F VERGR+VGYVKQQ+AKK REF    + E++CDGEEL+DQRLI DICK  N+AVIH
Sbjct: 119 EYTFCVERGRDVGYVKQQVAKKEREFD--SDHEVVCDGEELDDQRLIDDICKYNNDAVIH 176

Query: 180 LLVRKSAKVRAKPVQKDFEVSIEATELNE----KGADVVGEHQFETLF-MGYQIRERKLL 234
            LVRKS KVR KPV K+FE+SI A  LNE    +  D+VGE    T + +  QI  RK  
Sbjct: 177 FLVRKSVKVRTKPVDKNFELSIVAPRLNEENGTRNCDIVGEENNGTKYDVDKQILFRKPP 236

Query: 235 QNDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYI 294
             D L+EP+IV    +LP +IK ++++T DGLE  N PI S EG+GGAYFMQD SGQK++
Sbjct: 237 DRDFLIEPIIVNPKIELPYVIKDMVNATFDGLECRNNPIRSMEGTGGAYFMQDYSGQKFV 296

Query: 295 SVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDE 354
           SVFKP+DEEPM+VNNPRGLP+S DGEGLK+GTR GEGA REVAAYILDHP    +SL  +
Sbjct: 297 SVFKPVDEEPMAVNNPRGLPLSTDGEGLKRGTRVGEGAFREVAAYILDHPESGRWSLFGD 356

Query: 355 ERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDE 414
           E+GFAGVPPTVMV+C HKGFNH +  K     VK+GSLQMF+EN GSCE+MGP AFPV E
Sbjct: 357 EKGFAGVPPTVMVKCFHKGFNHVDDIK-----VKVGSLQMFMENNGSCEDMGPGAFPVKE 411

Query: 415 VHKISVLDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQA 473
           VHKI+VLDIR+AN DRHAGNIL+S+D E GQ  L+PIDHGYCLP SFEDCTFDWLYWPQA
Sbjct: 412 VHKIAVLDIRMANADRHAGNILLSRDAENGQTLLIPIDHGYCLPDSFEDCTFDWLYWPQA 471

Query: 474 RQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIG 533
            QP+   T++YI +LDAE+DI LLKFHGWD+P ECAR LRISTMLLKKGV+R LTPF IG
Sbjct: 472 HQPFDSSTVDYIKSLDAEEDIALLKFHGWDMPVECARTLRISTMLLKKGVERRLTPFAIG 531

Query: 534 CIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLT 583
            IMCR+TLK  S+IE+IV+EAQD VLPGTSE  FLE+V+ IMDR LD++ 
Sbjct: 532 SIMCRETLKKASLIEEIVQEAQDCVLPGTSEVAFLETVSHIMDRRLDEIA 581

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237921|ref|NP_197812.1| phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana] gi|10177083|dbj|BAB10389.1| ubiquitin [Arabidopsis thaliana] gi|110741569|dbj|BAE98733.1| ubiquitin [Arabidopsis thaliana] gi|332005891|gb|AED93274.1| phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana]

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/581 (65%), Positives = 453/581 (77%), Gaps = 13/581 (2%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A VALSP LEE +NFPG        L +D IL+FL++ GSVIP RVMESDSIASVKL
Sbjct: 1   MSVASVALSPALEELVNFPGIIGRFGFNL-DDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQS  GFFVKKQKL+++GRE++R++S++RDYGLADG +LHLV+RLSDLQAI+V TV GK
Sbjct: 60  RIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            FE  VER RNVGYVKQQIA K +E    ++ EL  DGEEL+DQRLITD+C+  + VIHL
Sbjct: 120 EFELVVERSRNVGYVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCQNGDNVIHL 179

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
           L+ KSAKVRAKPV KDFEV IE         DV  +H  +         E K    +  +
Sbjct: 180 LISKSAKVRAKPVGKDFEVFIE---------DVNHKHNVDGRRGKNISSEAK--PKEFFV 228

Query: 241 EPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPM 300
           EP IV    KLP+++K LISST++GLE+GN PI SS+GSGGAYFMQD SG KY+SVFKP+
Sbjct: 229 EPFIVNPEIKLPILLKELISSTLEGLEKGNGPIRSSDGSGGAYFMQDPSGHKYVSVFKPI 288

Query: 301 DEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAG 360
           DEEPM+VNNP G P+SVDGEGLKKGT+ GEGA+REVAAYILD+P     +   ++ GFAG
Sbjct: 289 DEEPMAVNNPHGQPVSVDGEGLKKGTQVGEGAIREVAAYILDYPMTGPRTFPHDQTGFAG 348

Query: 361 VPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISV 420
           VPPT MV+CLHK FNHPNGY    EN KIGSLQMFV NVGSCE+MG R FPVD+VHKISV
Sbjct: 349 VPPTTMVKCLHKDFNHPNGYSFSPENTKIGSLQMFVSNVGSCEDMGYRVFPVDQVHKISV 408

Query: 421 LDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSP 479
           LDIRLAN DRHAGNILVS+D + GQ+ L PIDHGYC P  FEDCTF+WLYWPQA++PYS 
Sbjct: 409 LDIRLANADRHAGNILVSRDGKDGQMVLTPIDHGYCFPNKFEDCTFEWLYWPQAKEPYSS 468

Query: 480 ETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK 539
           ET+ YI +LD EKDIELL+FHGW+IPP C RVLRISTMLLKKG  +GLTPF IG IMCR+
Sbjct: 469 ETLEYIKSLDPEKDIELLRFHGWEIPPSCTRVLRISTMLLKKGSAKGLTPFTIGSIMCRE 528

Query: 540 TLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLD 580
           TLK+ESVIEQI+ +A+  V   T+ED F+ +V++IMD  LD
Sbjct: 529 TLKEESVIEQIIHDAEAIVPTETTEDEFISTVSAIMDNRLD 569

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426304|ref|XP_002268042.1| PREDICTED: uncharacterized protein LOC100249570 [Vitis vinifera]

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/585 (65%), Positives = 459/585 (78%), Gaps = 7/585 (1%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A VA SP+  ES++ PG F  +PE  S++SIL++L+V GSVIP+RV+ESDSIASVK 
Sbjct: 1   MSVAAVASSPIRGESVHSPGFFHGQPEPCSSESILVYLTVAGSVIPLRVLESDSIASVKF 60

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQ   GF VKKQKLVF GRELAR++S VRDYG+  GNVLHLVL+LSDL AITV T CGK
Sbjct: 61  RIQICQGFVVKKQKLVFGGRELARNDSLVRDYGVTSGNVLHLVLKLSDLLAITVRTACGK 120

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            FEFHV+R  NVGY+KQ+I K  + FVDL++ E  C+G +L+DQ LI DIC  ++ +IHL
Sbjct: 121 EFEFHVDRYSNVGYLKQRIVKTRKCFVDLEDHEFFCNGNKLDDQVLIDDICT-SDPIIHL 179

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVV--GEHQFETLFMGYQIRERKLLQNDL 238
           LV+KSAKVRAKPV KDFE+S+ A + NE   D    GE++ E      Q+ E++    D 
Sbjct: 180 LVQKSAKVRAKPVDKDFELSVVAEDRNEGTRDGANEGENRSEEQL---QVVEKEPPDRDF 236

Query: 239 LLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFK 298
            LEP+IV    K P  I  LI+ST DGL+ GN PI SSEG+GG YFMQDS G KY+SVFK
Sbjct: 237 WLEPIIVNPKLKFPSFIWDLINSTFDGLDSGNHPILSSEGTGGTYFMQDSLGLKYVSVFK 296

Query: 299 PMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGF 358
           PMDEEPM+VNNPRGLP S +GEGLK+GTR GEGA+REVAAY+LDHP+       DEE GF
Sbjct: 297 PMDEEPMAVNNPRGLPASSNGEGLKRGTRVGEGAVREVAAYVLDHPKSGPRLFSDEEIGF 356

Query: 359 AGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKI 418
           AGVPPTVMV+CLHKG NHP GY+   E VKIGSLQ F+ + GSCE+MGP AFPV+EVHKI
Sbjct: 357 AGVPPTVMVQCLHKGLNHPEGYECSEEKVKIGSLQKFMNSHGSCEDMGPGAFPVEEVHKI 416

Query: 419 SVLDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY 477
           SV DIR+ANTDRHAGNILV+K+ + GQI L+PIDHGYCLP +FEDCTFDWLYWPQARQP+
Sbjct: 417 SVFDIRMANTDRHAGNILVNKEGKDGQIVLIPIDHGYCLPENFEDCTFDWLYWPQARQPF 476

Query: 478 SPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMC 537
           S +TI+YIN+LDAE+DI LLKF GW++  ECAR LRISTMLLKKG  RGLTPF IG IMC
Sbjct: 477 SLDTIDYINSLDAEQDIALLKFCGWELSLECARTLRISTMLLKKGAQRGLTPFVIGSIMC 536

Query: 538 RKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDL 582
           R TL  ESVIE+IV+EAQD++LPG SE  FLE+++ ++D  LD L
Sbjct: 537 RVTLNKESVIEEIVQEAQDSLLPGMSEAAFLETISQLIDTRLDKL 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812587|ref|XP_002874177.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297320014|gb|EFH50436.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/587 (64%), Positives = 456/587 (77%), Gaps = 25/587 (4%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
           MS+A VALSP LEE +NFPG        L +D IL+FL++ GSVIP RVMESDSIASVKL
Sbjct: 1   MSVASVALSPALEELVNFPGTIGRFGLNL-DDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query: 61  RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
           RIQS  GFFVKKQKL+++GRE  R++S++RDYGLADG +LHLV+RLSDLQAI+V TV GK
Sbjct: 60  RIQSIKGFFVKKQKLLYDGREPTRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query: 121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
            FE  VER RNVG+VKQQIA K +E    ++ EL  DGEEL+DQRLITD+CK  E VIHL
Sbjct: 120 EFELVVERSRNVGFVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCKNGENVIHL 179

Query: 181 LVRKSAKVRAKPVQKDFEVSIEATELNE-----KGADVVGEHQFETLFMGYQIRERKLLQ 235
           L+RKS KVRAKPV KDFEV IE           +G +++ + + +  F            
Sbjct: 180 LIRKSVKVRAKPVGKDFEVFIENVNHKHNVDGRRGKNILSQAKPKEFF------------ 227

Query: 236 NDLLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYIS 295
               +EP+IV    KLPL++K LISST++GLE+GN PI SS+GSGGAYFMQD SG KY+S
Sbjct: 228 ----VEPVIVNPEIKLPLLLKELISSTLEGLEKGNGPIQSSDGSGGAYFMQDPSGHKYVS 283

Query: 296 VFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEE 355
           VFKP+DEEPM+VNNPRG  +SVDGEGLKKGT+ GEGA+REVAAYILD+P     +   ++
Sbjct: 284 VFKPIDEEPMAVNNPRGQAVSVDGEGLKKGTQVGEGAMREVAAYILDYPMSGPLTFPHDQ 343

Query: 356 RGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEV 415
            GFAGVPPT MV+CLHK FNHPNGY    EN KIGSLQMFV NVGSCE+MG R FPVD+V
Sbjct: 344 TGFAGVPPTTMVKCLHKDFNHPNGYSFAPENTKIGSLQMFVSNVGSCEDMGYRVFPVDQV 403

Query: 416 HKISVLDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQAR 474
           HKISVLDIRLAN DRHAGNILVS+D + GQ+ L PIDHGYC P  FEDCTF+WLYWPQA+
Sbjct: 404 HKISVLDIRLANADRHAGNILVSRDGKDGQMVLTPIDHGYCFPNKFEDCTFEWLYWPQAK 463

Query: 475 QPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGC 534
           +PYS ET+ YI +LD E+DIELL+FHGW+IPP CARVLRISTMLLKKG  +GLT F IG 
Sbjct: 464 EPYSSETVEYIKSLDPEQDIELLRFHGWEIPPSCARVLRISTMLLKKGSAKGLTLFTIGS 523

Query: 535 IMCRKTLKDESVIEQIVREAQDAVLPG-TSEDGFLESVASIMDRHLD 580
           IMCR+TLK+ESVIEQI+ +A+ A++P  T+ED F+ +V++IMD  LD
Sbjct: 524 IMCRETLKEESVIEQIIHDAE-AIMPTETTEDEFISTVSAIMDNRLD 569

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463917|ref|XP_003602240.1| Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula] gi|355491288|gb|AES72491.1| Phosphatidylinositol 4-kinase type 2-beta [Medicago truncatula]

 Score =  761 bits (1965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/590 (64%), Positives = 464/590 (78%), Gaps = 18/590 (3%)

Query: 3   MACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRI 62
           MAC+ L P+ E      G FT        +SILI+L+VGGSVIPM ++E+DSIASVKLRI
Sbjct: 1   MACLVLHPMHEN-----GEFTSSFSPHMRESILIYLTVGGSVIPMHILETDSIASVKLRI 55

Query: 63  QSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVF 122
           Q+  GFFVKK KLVFEG+ELA + S V DYG+ADGNVLHLVLRLSDL+AITV T+ GK F
Sbjct: 56  QTLEGFFVKKLKLVFEGKELAHNKSCVGDYGVADGNVLHLVLRLSDLKAITVRTLSGKEF 115

Query: 123 EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV 182
            F+VE+ RNVGYVKQQIAKKGR   +L +QEL+ +GE LEDQRLI DICK N+AVIHLLV
Sbjct: 116 GFYVEKTRNVGYVKQQIAKKGRGVFNLADQELVWEGEALEDQRLIEDICKDNDAVIHLLV 175

Query: 183 RKS-AKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLE 241
           R S +KVR KPV+KD E+SIEA   ++   +   + Q   + +  ++ +R  L  + LLE
Sbjct: 176 RISDSKVRTKPVEKDLELSIEALFAHDTVPNSAVD-QLGPVSITNKVLKRNQLTREFLLE 234

Query: 242 PLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMD 301
           P+   SN K+P ++  LI  T++GLE+G +PI SSEGSGGAY MQDSSG KY+S+FKP D
Sbjct: 235 PIFNNSNIKIPPVVHELIKVTLEGLEKGRKPIRSSEGSGGAYLMQDSSGLKYVSIFKPTD 294

Query: 302 EEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLH-DEERGFAG 360
           EEPM+ NNPRGLPISVDGEGLKKGT+ G+GALREVAAYILDHPR    S H +EE+GFAG
Sbjct: 295 EEPMAFNNPRGLPISVDGEGLKKGTQVGQGALREVAAYILDHPRKGPRSYHNNEEKGFAG 354

Query: 361 VPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISV 420
           VPPTVMVRC+H+GF+HP GYK+   NVKIGSLQMF+ N+GSCE+MGPR FPV+EVHKISV
Sbjct: 355 VPPTVMVRCMHEGFHHPEGYKNVSSNVKIGSLQMFMRNIGSCEDMGPRTFPVEEVHKISV 414

Query: 421 LDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYS---------FEDCTFDWLYW 470
           LD+RL N DRHAGNILV+K+ E G I L+PIDHGYCLP S         FEDCTFDWLYW
Sbjct: 415 LDMRLVNADRHAGNILVAKNGEDGPIVLIPIDHGYCLPKSVSPLRFNEPFEDCTFDWLYW 474

Query: 471 PQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPF 530
           PQA++PYS +T  YI +LDAE+DI+LLK HGW++P ECAR+LRISTMLL+KG ++GLTPF
Sbjct: 475 PQAQEPYSLDTTEYIKSLDAEEDIKLLKSHGWELPLECARILRISTMLLQKGAEKGLTPF 534

Query: 531 DIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLD 580
            IG IMCR+TLK +SVIEQI+ +A++A LPGTSE  FL+ V+ IMD HL+
Sbjct: 535 TIGSIMCRETLKKKSVIEQIIHKAEEAALPGTSEAKFLDLVSVIMDNHLE 584

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053771|ref|XP_002297971.1| predicted protein [Populus trichocarpa] gi|222845229|gb|EEE82776.1| predicted protein [Populus trichocarpa]

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/586 (62%), Positives = 467/586 (79%), Gaps = 7/586 (1%)

Query: 1   MSMACVALSPVLEESLNF-PGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
           MS+  V LSP+ +ES +F PG    +   + + SILI++SVGGS IPMRV ESDSIA+VK
Sbjct: 1   MSVVDVGLSPIFKESGHFLPGYCGQKGPVIEDSSILIYISVGGSSIPMRVFESDSIAAVK 60

Query: 60  LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
           LRIQ+  GF V KQKLVF GRELAR++S V+DYG+  GNVLHLVL+LSDL  + V T  G
Sbjct: 61  LRIQTRKGFVVNKQKLVFGGRELARNDSLVKDYGVTRGNVLHLVLKLSDLLFVIVRTNSG 120

Query: 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
           + FEFHV+R RNVGY+KQ+I K+G+ FVD+++QE+  +G++L+DQ+++ DIC  N+A IH
Sbjct: 121 EEFEFHVDRFRNVGYIKQRIFKEGKGFVDVEDQEIFFNGKKLDDQKIVDDICNDNDAAIH 180

Query: 180 LLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVV--GEHQFETLFMGYQIRERKLLQND 237
           LLV KSAKVRAKP++KDFE+ + A+   EK    +  GE++ E + +  + R  +    +
Sbjct: 181 LLVEKSAKVRAKPLEKDFEILVVASNSTEKRDRSIDGGENRSEEVLVLSKERSGR----N 236

Query: 238 LLLEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVF 297
            +LEP+IV    KL  +   +I+S + GLE+GN PI SSEG+GG YF+QD SGQ+++SVF
Sbjct: 237 FMLEPVIVNPKVKLNSVFWNMINSALGGLEKGNAPIRSSEGTGGTYFLQDPSGQEFVSVF 296

Query: 298 KPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERG 357
           KP+DEEPM+VNNP+GLP+S +GEGLK+GTR GEGALREVAAYILDHPR    +++ E  G
Sbjct: 297 KPVDEEPMAVNNPQGLPVSSNGEGLKRGTRVGEGALREVAAYILDHPRSGPRAVNGETIG 356

Query: 358 FAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHK 417
           FAGVPPTV+V+CLHKGFNHP G+++ +E  KIGSLQMF++N G+CE++GP AFPV+EVHK
Sbjct: 357 FAGVPPTVIVQCLHKGFNHPEGFENAMEYAKIGSLQMFMKNEGNCEDIGPGAFPVEEVHK 416

Query: 418 ISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY 477
           ISV DIR+ANTDRHAGNIL+S  E GQ  L+PIDHGYCLP  FEDCTFDWLYWPQARQPY
Sbjct: 417 ISVFDIRMANTDRHAGNILISTGEDGQTILIPIDHGYCLPEKFEDCTFDWLYWPQARQPY 476

Query: 478 SPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMC 537
           SPE ++YIN+LDAE DI L++F+GW+IP ECARVLRISTMLLKKGV+RGLTPF IG IMC
Sbjct: 477 SPEVVDYINSLDAEHDIALVQFYGWNIPLECARVLRISTMLLKKGVERGLTPFAIGSIMC 536

Query: 538 RKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLT 583
           R+ L  ESVIE+I+REA+D++LPG SE  FLE+V++IMD  LD+ T
Sbjct: 537 RENLNKESVIEEIIREAEDSLLPGMSEAAFLEAVSNIMDYRLDEFT 582

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828377|ref|XP_002882071.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297327910|gb|EFH58330.1| phosphatidylinositol 3-and 4-kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/581 (63%), Positives = 452/581 (77%), Gaps = 21/581 (3%)

Query: 1   MSMACVALSPVLEESLNFPGNFTHR-PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
           MS A VALSPV  E L  P    +   +   +D+I+I+L++ G+VIPMRV+ESDSI SVK
Sbjct: 1   MSSAGVALSPVRSEPLIMPLVRANSCADSYPDDTIMIYLTLPGTVIPMRVLESDSIESVK 60

Query: 60  LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
           LRIQSY GF V+ QKLVF GRELARSNS +RDYG+++GN+LHLVL+LSDLQ + V T CG
Sbjct: 61  LRIQSYRGFVVRNQKLVFGGRELARSNSNMRDYGVSEGNILHLVLKLSDLQVLDVKTTCG 120

Query: 120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
           K   FHVERGRN+GYVK+QI+KK  +FVD   QEL+ +GE+LEDQ LI DIC+ +++V+H
Sbjct: 121 KHCRFHVERGRNIGYVKKQISKKRGDFVDPDEQELLYEGEKLEDQSLINDICRNDDSVLH 180

Query: 180 LLVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLL 239
           LLVR+SAKVRAKPV+K+FE+SI A +  +K                 +  +R +    L 
Sbjct: 181 LLVRRSAKVRAKPVEKNFELSIVAPQAKDKKG---------------READRIVPPKKLS 225

Query: 240 LEPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKP 299
           LEP+IV S  K+PL++K +I S  DGL+ GN P+ S EG+GGAYFMQ  SG K++ VFKP
Sbjct: 226 LEPVIVNSKAKVPLVVKDMIKSASDGLKSGNSPVRSREGTGGAYFMQGPSGNKFVGVFKP 285

Query: 300 MDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFA 359
           +DEEPM+ NNP+GLP+S +GEGLKKGT+ GEGALREVAAYILDHP+    S+  EE GFA
Sbjct: 286 IDEEPMAENNPQGLPLSPNGEGLKKGTKVGEGALREVAAYILDHPKIGNRSMSGEEIGFA 345

Query: 360 GVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKIS 419
           GVPPT M+ CLH GFNHP G K      KIGSLQMF EN GSCE+MGP +FPV+EVHKIS
Sbjct: 346 GVPPTAMIECLHPGFNHPKGIK-----TKIGSLQMFTENDGSCEDMGPLSFPVEEVHKIS 400

Query: 420 VLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSP 479
           VLDIRLAN DRH GNIL++KDE G++ LVPIDHGYCLP SFEDCTF+WLYWPQAR+PYS 
Sbjct: 401 VLDIRLANADRHGGNILMTKDENGKLVLVPIDHGYCLPESFEDCTFEWLYWPQARKPYSA 460

Query: 480 ETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK 539
           ET +YI +LDAE+DI+LLKFHGW +P E AR LRISTMLLKKGV+RGLT F+IG IMCR+
Sbjct: 461 ETRDYIRSLDAEEDIDLLKFHGWKMPAETARTLRISTMLLKKGVERGLTAFEIGTIMCRE 520

Query: 540 TLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLD 580
           TL  +S++E++V EAQ+AVLPGTSE  FLE+++ +MD HLD
Sbjct: 521 TLSKKSLVEEMVEEAQEAVLPGTSEAAFLEALSDVMDYHLD 561

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	590
TAIR|locus:2169774	574	AT5G24240 [Arabidopsis thalian	0.962	0.989	0.659	5.8e-201
TAIR|locus:2039064	566	PI4K GAMMA 4 "phosphoinositide	0.727	0.757	0.570	1.3e-130
TAIR|locus:2019419	301	AT1G64460 [Arabidopsis thalian	0.506	0.993	0.646	3e-108
TAIR|locus:2023865	622	AT1G13640 "AT1G13640" [Arabido	0.566	0.536	0.389	1.3e-59
TAIR|locus:2056799	650	PI4K GAMMA 7 "AT2G03890" [Arab	0.505	0.458	0.400	2e-59
TAIR|locus:2028798	630	AT1G26270 "AT1G26270" [Arabido	0.493	0.461	0.394	1.8e-54
TAIR|locus:2102604	536	AT3G56600 [Arabidopsis thalian	0.5	0.550	0.390	3.1e-51
TAIR|locus:2058485	561	PI4K GAMMA 1 "AT2G40850" [Arab	0.505	0.531	0.385	2.8e-50
TAIR|locus:2019459	213	AT1G64470 "AT1G64470" [Arabido	0.323	0.896	0.552	1.5e-49
DICTYBASE|DDB_G0291370	401	DDB_G0291370 "phosphatidylinos	0.450	0.663	0.359	5.7e-37

TAIR|locus:2169774 AT5G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1945 (689.7 bits), Expect = 5.8e-201, P = 5.8e-201
 Identities = 383/581 (65%), Positives = 456/581 (78%)

Query:     1 MSMACVALSPVLEESLNFPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKL 60
             MS+A VALSP LEE +NFPG        L +D IL+FL++ GSVIP RVMESDSIASVKL
Sbjct:     1 MSVASVALSPALEELVNFPGIIGRFGFNL-DDPILVFLTIAGSVIPKRVMESDSIASVKL 59

Query:    61 RIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGK 120
             RIQS  GFFVKKQKL+++GRE++R++S++RDYGLADG +LHLV+RLSDLQAI+V TV GK
Sbjct:    60 RIQSIKGFFVKKQKLLYDGREVSRNDSQIRDYGLADGKLLHLVIRLSDLQAISVRTVDGK 119

Query:   121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL 180
              FE  VER RNVGYVKQQIA K +E    ++ EL  DGEEL+DQRLITD+C+  + VIHL
Sbjct:   120 EFELVVERSRNVGYVKQQIASKEKELGIPRDHELTLDGEELDDQRLITDLCQNGDNVIHL 179

Query:   181 LVRKSAKVRAKPVQKDFEVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLL 240
             L+ KSAKVRAKPV KDFEV IE  ++N K  +V G         G  I   +    +  +
Sbjct:   180 LISKSAKVRAKPVGKDFEVFIE--DVNHKH-NVDGRR-------GKNISS-EAKPKEFFV 228

Query:   241 EPLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPM 300
             EP IV    KLP+++K LISST++GLE+GN PI SS+GSGGAYFMQD SG KY+SVFKP+
Sbjct:   229 EPFIVNPEIKLPILLKELISSTLEGLEKGNGPIRSSDGSGGAYFMQDPSGHKYVSVFKPI 288

Query:   301 DEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAG 360
             DEEPM+VNNP G P+SVDGEGLKKGT+ GEGA+REVAAYILD+P     +   ++ GFAG
Sbjct:   289 DEEPMAVNNPHGQPVSVDGEGLKKGTQVGEGAIREVAAYILDYPMTGPRTFPHDQTGFAG 348

Query:   361 VPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISV 420
             VPPT MV+CLHK FNHPNGY    EN KIGSLQMFV NVGSCE+MG R FPVD+VHKISV
Sbjct:   349 VPPTTMVKCLHKDFNHPNGYSFSPENTKIGSLQMFVSNVGSCEDMGYRVFPVDQVHKISV 408

Query:   421 LDIRLANTDRHAGNILVSKD-EGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSP 479
             LDIRLAN DRHAGNILVS+D + GQ+ L PIDHGYC P  FEDCTF+WLYWPQA++PYS 
Sbjct:   409 LDIRLANADRHAGNILVSRDGKDGQMVLTPIDHGYCFPNKFEDCTFEWLYWPQAKEPYSS 468

Query:   480 ETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK 539
             ET+ YI +LD EKDIELL+FHGW+IPP C RVLRISTMLLKKG  +GLTPF IG IMCR+
Sbjct:   469 ETLEYIKSLDPEKDIELLRFHGWEIPPSCTRVLRISTMLLKKGSAKGLTPFTIGSIMCRE 528

Query:   540 TLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLD 580
             TLK+ESVIEQI+ +A+  V   T+ED F+ +V++IMD  LD
Sbjct:   529 TLKEESVIEQIIHDAEAIVPTETTEDEFISTVSAIMDNRLD 569

GO:0009507 "chloroplast" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2039064 PI4K GAMMA 4 "phosphoinositide 4-kinase gamma 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1281 (456.0 bits), Expect = 1.3e-130, P = 1.3e-130
 Identities = 254/445 (57%), Positives = 328/445 (73%)

Query:   141 KKGREFVDLKNQELICDGE--ELEDQRLITDICK-RNEAVIHLLVRKSAKVRAKPVQKDF 197
             ++GR    +K Q     G+  + ++Q ++ +  K  ++++I+ + R    V    V++  
Sbjct:   128 ERGRNIGYVKKQISKKRGDFVDPDEQEILYEGEKLEDQSLINDICRNDDSVLHLLVRRSA 187

Query:   198 EVSIEATELNEKGADVVGEHQFETLFMGYQIRERKLL--QNDLLLEPLIVESNFKLPLMI 255
             +V ++  E N + + V  + + +    G   RE K +     L LEP++V S  K+PL++
Sbjct:   188 KVRVKPVEKNFELSIVAPQAKDKK---G---REAKSIVPPKKLSLEPVVVNSKAKVPLVV 241

Query:   256 KRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPI 315
             K +I S  DGL+ GN P+ SSEG+GGAYFMQ  SG K++ VFKP+DEEPM+ NNP+GLP+
Sbjct:   242 KDMIQSASDGLKSGNSPVRSSEGTGGAYFMQGPSGNKFVGVFKPIDEEPMAENNPQGLPL 301

Query:   316 SVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFN 375
             S +GEGLKKGT+ GEGALREVAAYILDHP+    S+  EE GFAGVPPT M+ CLH GFN
Sbjct:   302 SPNGEGLKKGTKVGEGALREVAAYILDHPKSGNKSMFGEEIGFAGVPPTAMIECLHPGFN 361

Query:   376 HPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNI 435
             HP G K      KIGSLQMF EN GSCE+MGP +FPV+EVHKISVLDIRLAN DRH GNI
Sbjct:   362 HPKGIK-----TKIGSLQMFTENDGSCEDMGPLSFPVEEVHKISVLDIRLANADRHGGNI 416

Query:   436 LVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIE 495
             L++KDE G++ LVPIDHGYCLP SFEDCTF+WLYWPQAR+PYS ET  YI +LDAE+DI+
Sbjct:   417 LMTKDESGKLVLVPIDHGYCLPESFEDCTFEWLYWPQARKPYSAETQEYIRSLDAEEDID 476

Query:   496 LLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQ 555
             LLKFHGW +P E A+ LRISTMLLKKGV+RGLT F+IG IMCR+TL  +S++E++V EAQ
Sbjct:   477 LLKFHGWKMPAETAQTLRISTMLLKKGVERGLTAFEIGTIMCRETLSKKSLVEEMVEEAQ 536

Query:   556 DAVLPGTSEDGFLESVASIMDRHLD 580
             +AVLPGTSE  FLE+++ +MD HLD
Sbjct:   537 EAVLPGTSEAAFLEALSDVMDYHLD 561

GO:0009507 "chloroplast" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004430 "1-phosphatidylinositol 4-kinase activity" evidence=IDA

GO:0046854 "phosphatidylinositol phosphorylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2019419 AT1G64460 [Arabidopsis thaliana (taxid:3702)]

 Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
 Identities = 194/300 (64%), Positives = 243/300 (81%)

Query:   285 MQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHP 344
             MQDSSG  Y+SVFKPMDEEPM+VNNP+ LP+S DG+GLK+GTR GEGA REVAAY+LDHP
Sbjct:     1 MQDSSGLNYVSVFKPMDEEPMAVNNPQQLPVSSDGQGLKRGTRVGEGATREVAAYLLDHP 60

Query:   345 RDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKH-DLENVKIGSLQMFVENVGSCE 403
             +    S+  E  GFAGVPPT MVR  HK +N+PNG+     ++ K+GSLQMF++N GSCE
Sbjct:    61 KSGLRSVSKEVMGFAGVPPTAMVRSSHKVYNYPNGFSSCATKDAKVGSLQMFMKNNGSCE 120

Query:   404 EMGPRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDC 463
             ++GP AFPV+EVHKI V DIR+AN DRHAGNIL  K E G+  L+PIDHGYCLP +FEDC
Sbjct:   121 DIGPGAFPVEEVHKICVFDIRMANADRHAGNILTGKSEEGKTLLIPIDHGYCLPENFEDC 180

Query:   464 TFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGV 523
             TF+WLYWPQA+ P+S +TI+YIN+LD+E+DI LL+ HGW++P   +R LRISTMLLKKGV
Sbjct:   181 TFEWLYWPQAKLPFSADTIDYINSLDSEQDIALLQLHGWNVPEAVSRTLRISTMLLKKGV 240

Query:   524 DRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASIMDRHLDDLT 583
             +R LTP+ IG +MCR+T+  +S IE+IVREA ++VLP +SE  FLE+V+  MDR LD+LT
Sbjct:   241 ERNLTPYQIGSVMCRETVNKDSAIEEIVREAHNSVLPASSEATFLEAVSVAMDRRLDELT 300

GO:0005634 "nucleus" evidence=ISM

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2023865 AT1G13640 "AT1G13640" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
 Identities = 145/372 (38%), Positives = 202/372 (54%)

Query:   242 PLIVESNFKLPLMIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMD 301
             P+ + S+    L +K+  +  V  ++ G EPIP + G GGAY+ +D  GQ  +++ KP D
Sbjct:   131 PIEILSHSPCFLSLKQTANDIVKAMKMGVEPIPVNGGLGGAYYFRDEKGQS-VAIVKPTD 189

Query:   302 EEPMSVNNPRGLPISVDGE-GLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAG 360
             EEP + NNP+G      G+ GLK   R GE   REVAAY+LD+        H     FA 
Sbjct:   190 EEPFAPNNPKGFVGKALGQPGLKPSVRVGETGFREVAAYLLDYD-------H-----FAN 237

Query:   361 VPPTVMVRCLHKGFNHPNGY-------KHDLENVKIGSLQMFVENVGSCEEMGPRAFPVD 413
             VPPT +V+  H  FN  +G        K  L + KI S Q FV +     + G  +FPV 
Sbjct:   238 VPPTALVKITHSVFNVNDGMDGNKSREKKKLVSSKIASFQKFVPHDFDASDHGTSSFPVA 297

Query:   414 EVHKISVLDIRLANTDRHAGNILVSK-DEGG-----QIKLVPIDHGYCLPYSFEDCTFDW 467
              VH+I +LDIR+ NTDRH GN+LV K D+GG     Q++L+PIDHG CLP + ED  F+W
Sbjct:   298 SVHRIGILDIRILNTDRHGGNLLVKKLDDGGVGRFGQVELIPIDHGLCLPETLEDPYFEW 357

Query:   468 LYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGL 527
             ++WPQA  P+S E ++YI +LD  KD E+L+     I   C RVL + T+ LK+    GL
Sbjct:   358 IHWPQASIPFSEEELDYIQSLDPVKDCEMLRRELPMIREACLRVLVLCTVFLKEAAVFGL 417

Query:   528 TPFDIGCIMCRKTLKDE---SVIEQIVREA------QDAVLPGTSEDGFLESVASIMDRH 578
                +IG +M R+    E   S +E +  EA      QD + P +  +G  E    I    
Sbjct:   418 CLAEIGEMMTREFRAGEEEPSELEMLCIEAKRLTTEQDVLSPKSDGEGETEFQFDIDYNE 477

Query:   579 LDDLTPQGGQVE 590
             LD +   G + E
Sbjct:   478 LDSV--YGSETE 487

GO:0005575 "cellular_component" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2056799 PI4K GAMMA 7 "AT2G03890" [Arabidopsis thaliana (taxid:3702)]

 Score = 564 (203.6 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
 Identities = 131/327 (40%), Positives = 187/327 (57%)

Query:   254 MIKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGL 313
             ++K ++   V  ++ G EP+P   G GGAY+ ++  G+  +++ KP DEEP + NNP+G 
Sbjct:   151 IVKHMVKDIVKAMKMGVEPLPVHSGLGGAYYFRNKRGES-VAIVKPTDEEPFAPNNPKGF 209

Query:   314 PISVDGE-GLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHK 372
                  G+ GLK   R GE   REVAAY+LD+ R            FA VPPT +V+  H 
Sbjct:   210 VGKALGQPGLKSSVRVGETGFREVAAYLLDYGR------------FANVPPTALVKITHS 257

Query:   373 GFNHPNGYK----HDLENV-KIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLAN 427
              FN  +G K     + + V KI S Q FV +     + G  +FPV  VH+I +LDIR+ N
Sbjct:   258 VFNVNDGVKGNKPREKKLVSKIASFQKFVAHDFDASDHGTSSFPVTSVHRIGILDIRIFN 317

Query:   428 TDRHAGNILVSKDEG----GQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETIN 483
             TDRH GN+LV K +G    GQ++L+PIDHG CLP + ED  F+W++WPQA  P+S E ++
Sbjct:   318 TDRHGGNLLVKKLDGVGMFGQVELIPIDHGLCLPETLEDPYFEWIHWPQASLPFSDEEVD 377

Query:   484 YINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKD 543
             YI +LD  KD ++L+     I   C RVL + T+ LK+    GL   +IG +M R+    
Sbjct:   378 YIQSLDPVKDCDMLRRELPMIREACLRVLVLCTIFLKEASAYGLCLAEIGEMMTREFRPG 437

Query:   544 E---SVIEQIVREAQDAVLPGTSEDGF 567
             E   S +E +  EA+ +V   T  D F
Sbjct:   438 EEEPSELEVVCIEAKRSV---TERDVF 461

GO:0005575 "cellular_component" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0004430 "1-phosphatidylinositol 4-kinase activity" evidence=IDA

GO:0046854 "phosphatidylinositol phosphorylation" evidence=IDA

TAIR|locus:2028798 AT1G26270 "AT1G26270" [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 125/317 (39%), Positives = 180/317 (56%)

Query:   255 IKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLP 314
             ++++       +++G +P+  + G GGAY+ ++S G+  +++ KP DEEP + NNP+G  
Sbjct:   148 VRQMAKDITKAVKKGIDPVAVNSGLGGAYYFKNSRGES-VAIVKPTDEEPYAPNNPKGFV 206

Query:   315 ISVDGE-GLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKG 373
                 G+ GLK+  R GE   REVAAY+LD         H     FA VPPT +V+  H  
Sbjct:   207 GKALGQPGLKRSVRVGETGYREVAAYLLDKE-------H-----FANVPPTALVKITHSI 254

Query:   374 FNHPNGYKHD--LENV---KIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANT 428
             FN  +G K    +E +   KI SLQ F+ +     E G   FPV  VH+I +LDIR+ NT
Sbjct:   255 FNVNDGVKASKPMEKMLVSKIASLQQFIPHDYDASEHGTSNFPVSAVHRIGILDIRILNT 314

Query:   429 DRHAGNILVSKDEG----GQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINY 484
             DRH+GN+LV K +G    GQ++LVPIDHG CLP + ED  F+W++WPQA  P+S + + Y
Sbjct:   315 DRHSGNLLVKKLDGDGMFGQVELVPIDHGLCLPETLEDPYFEWIHWPQASIPFSEDELKY 374

Query:   485 INALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLK-D 543
             I  LD   D E+L+     +     RVL + T+ LK+    GL   +IG +M R+    D
Sbjct:   375 IANLDPLGDCEMLRRELPMVREASLRVLVLCTIFLKEAAANGLCLAEIGEMMTREVRPGD 434

Query:   544 E--SVIEQIVREAQDAV 558
             E  S IE +  EA   +
Sbjct:   435 EEPSEIEVVCLEAMSLI 451

GO:0005575 "cellular_component" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0043424 "protein histidine kinase binding" evidence=IPI

TAIR|locus:2102604 AT3G56600 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 127/325 (39%), Positives = 182/325 (56%)

Query:   255 IKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLP 314
             ++ L++     +  G +P+    G GGAY +Q   G   I+V KP+DEEP++ NNP+G  
Sbjct:    90 VRSLVAEVTIAIVSGAQPLLLPSGLGGAYLLQTEKGNN-IAVAKPVDEEPLAFNNPKGSG 148

Query:   315 -ISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKG 373
              +++   G+K+  R GE  +RE+AAY+LDH            +GF+ VPPT +VR  H  
Sbjct:   149 GLTLGQPGMKRSIRVGESGIRELAAYLLDH------------QGFSSVPPTALVRISHVP 196

Query:   374 FNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAG 433
             F H  G  H     K+ SLQ FV +     E+GP +F V  VH+I +LD+R+ N DRHAG
Sbjct:   197 F-HDRGSDHAA--YKVASLQRFVGHDFDAGELGPGSFTVVSVHRIGILDVRVLNLDRHAG 253

Query:   434 NILVSK----DE-----G-GQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETIN 483
             N+LV K    DE     G G  +LVPIDHG CLP   +D  F+WL WPQA  P++   + 
Sbjct:   254 NMLVKKIHDQDETTCSNGVGAAELVPIDHGLCLPECLDDPYFEWLNWPQASVPFTDIELQ 313

Query:   484 YINALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKD 543
             YI+ LD  KD ELL+     I     RVL + T+ LK+    GL+  +IG  M R   + 
Sbjct:   314 YISNLDPFKDAELLRTELDSIQESSLRVLIVCTIFLKEAAAAGLSLAEIGEKMTRDICRG 373

Query:   544 E---SVIEQIVREAQDAVLPGTSED 565
             E   SV+E +  +A+ + + G+ +D
Sbjct:   374 EESSSVLEILCNKAKASAVSGSDDD 398

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2058485 PI4K GAMMA 1 "AT2G40850" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 124/322 (38%), Positives = 177/322 (54%)

Query:   255 IKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLP 314
             ++ L++     +  G +P+    G GGAY +Q   G   I+V KP+DEEP++ NNP+   
Sbjct:   107 VRALVAEVTMAMVSGAQPLLLPSGMGGAYLLQTGKGHN-IAVAKPVDEEPLAFNNPKKSG 165

Query:   315 ISVDGE-GLKKGTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKG 373
               + G+ G+K     GE  +RE+AAY+LD+            +GF+GVPPT +V   H  
Sbjct:   166 NLMLGQPGMKHSIPVGETGIRELAAYLLDY------------QGFSGVPPTALVSISHVP 213

Query:   374 FNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAG 433
             F+  + +       K+ SLQ FV +     E+GP +F    VH+I +LD+RL N DRHAG
Sbjct:   214 FHVSDAFSFSSMPYKVASLQRFVGHDFDAGELGPGSFTATSVHRIGILDVRLLNLDRHAG 273

Query:   434 NILVS---KDEG----GQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYIN 486
             N+LV    K E     G  +LVPIDHG CLP   +D  F+WL WPQA  P+S   ++YI+
Sbjct:   274 NMLVKRCDKKEAYNRLGTAELVPIDHGLCLPECLDDPYFEWLNWPQALVPFSDTELDYIS 333

Query:   487 ALDAEKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDE-- 544
              LD  KD ELL+     +P    RVL + T+ LK+    GL   +IG  M R   K E  
Sbjct:   334 NLDPFKDAELLRTELHSLPESAIRVLVVCTVFLKQAAAAGLCLAEIGEKMTRDFSKGEES 393

Query:   545 -SVIEQIVREAQDAVLPGTSED 565
              S++E +  +A+ +V   TSED
Sbjct:   394 FSLLETLCTKAKASVFGKTSED 415

GO:0005575 "cellular_component" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

TAIR|locus:2019459 AT1G64470 "AT1G64470" [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 106/192 (55%), Positives = 141/192 (73%)

Query:     1 MSMACVALSPVLEESLNFPGNFTHRPEK-LSNDSILIFLSVGGSVIPMRVMESDSIASVK 59
             MS+A VALSP+   S    G F        S  S+L+FLSV GS +PM ++ESDSIA VK
Sbjct:     1 MSVADVALSPIHRGSAFAVGGFGQSTTTHYSVKSVLVFLSVSGSTMPMLILESDSIAEVK 60

Query:    60 LRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCG 119
             LRIQ+ NGF V++QKLVF GRELAR+ SRV+DYG+  G+VLHLVL+L D   +TV T CG
Sbjct:    61 LRIQTCNGFRVRRQKLVFSGRELARNASRVKDYGVTGGSVLHLVLKLYDPLLVTVITTCG 120

Query:   120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIH 179
             KVF+FHV+R RNVGY+K++I+K+G+ F ++ +QE++  GE+L+D R+I  ICK   +VIH
Sbjct:   121 KVFQFHVDRRRNVGYLKKRISKEGKGFPEVDDQEILFKGEKLDDNRIIDGICKDGNSVIH 180

Query:   180 LLVRKSAKVRAK 191
             LLV+KS +   K
Sbjct:   181 LLVKKSVEDTVK 192

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0291370 DDB_G0291370 "phosphatidylinositol 3-kinase-related protein kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 399 (145.5 bits), Expect = 5.7e-37, P = 5.7e-37
 Identities = 107/298 (35%), Positives = 161/298 (54%)

Query:   270 NEPIPSSEG-SGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRA 328
             + P   SEG  GG YF+Q       ISVFKP DEE    N   G   S+   G+K GT  
Sbjct:    88 SSPKLCSEGVGGGVYFIQGEKDTHPISVFKPRDEE----NGIIGPNHSM--MGMKAGTLP 141

Query:   329 GEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFN---HPNGYK---- 381
             GEG  +EVA Y+ D        LH   +G+ GVP T +V   H  +N     +G      
Sbjct:   142 GEGVFKEVAIYLFDQ-------LH---KGYFGVPVTTLVEVQHPIWNKQQQADGAATEND 191

Query:   382 ---HDLENVK-IGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGNILV 437
                ++L  VK IGSLQ ++    + +E+G   F VD++H+I +LD  + N DRH+GN+LV
Sbjct:   192 SNFNELLGVKKIGSLQEYIVYEDTADEVGCSKFSVDDIHRIGLLDSLVLNCDRHSGNLLV 251

Query:   438 -SKDEGGQIKLVPIDHGYCLPYS--FEDCTFDWLYWPQARQPYSPETINYINALDAEKDI 494
              +K++  +++LVPIDH  CLP S    D  FDW+ +PQ++ P+S +    + ++D +K I
Sbjct:   252 VAKEDSDRLELVPIDHSLCLPSSDQLSDAWFDWINFPQSKVPFSEKEKQLVESIDIDKVI 311

Query:   495 ELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCR-KTLKDESVIEQIV 551
               L      +   C   L+++T+ +KK V+ GL    IG  + R ++L + S +E I+
Sbjct:   312 RQLHSKLPKLRLGCLETLKLTTLFVKKAVEAGLNLCQIGMAISRYQSLDEPSPLESII 369

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.67	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037263001 SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (529 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	590
pfam00454	233	pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3-	7e-45
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	4e-12
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	1e-07
cd01803	76	cd01803, Ubiquitin, Ubiquitin	4e-07
smart00213	72	smart00213, UBQ, Ubiquitin homologues	1e-06
cd01800	76	cd01800, SF3a120_C, Ubiquitin-like domain of Mamma	4e-06
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-05
cd01803	76	cd01803, Ubiquitin, Ubiquitin	3e-05
cd01806	76	cd01806, Nedd8, Nebb8-like ubiquitin protein	8e-05
cd01802	103	cd01802, AN1_N, ubiquitin-like domain of AN1	2e-04
TIGR03843	253	TIGR03843, TIGR03843, conserved hypothetical prote	3e-04
smart00213	72	smart00213, UBQ, Ubiquitin homologues	8e-04
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	0.001
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	0.002
PTZ00044	76	PTZ00044, PTZ00044, ubiquitin; Provisional	0.002

>gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase

 Score =  158 bits (402), Expect = 7e-45
 Identities = 70/272 (25%), Positives = 86/272 (31%), Gaps = 58/272 (21%)

Query: 280 GGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAY 339
           GG    QD    + I                          GL     +GEG  R +AAY
Sbjct: 8   GGDDLRQDERVLQLI--------------------------GLMNKLLSGEGLDRRLAAY 41

Query: 340 ILDH--PRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENV----KIGSLQ 393
           ++    P              A +P T MV+     FN+               K+G LQ
Sbjct: 42  LVIPLGPGSGLIEWVPNSTTLAEIPRTYMVKKGIPLFNYSRKVLVFESRTALFPKVGLLQ 101

Query: 394 MFVENVGSCEEMG-PRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDH 452
            FV++    EE G  R   V     +SVLD  L N DRH  NILV K  G   KL  ID 
Sbjct: 102 WFVKHFPDAEEWGEARKNFVRSCAGMSVLDYILGNGDRHLDNILVDKTTG---KLFHIDF 158

Query: 453 GYCLP-----YSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIELLKFHGWDIPPE 507
           G C P        E   F          P+      Y    D   D  L +         
Sbjct: 159 GLCFPKAKRGPKPERVPFRLTR------PFVEAMGGY----DPSGDEGLFRELCETAYEA 208

Query: 508 CARVLRISTMLLKKGVDRGLTPFDIGCIMCRK 539
             R L + T LL       L   + G    R 
Sbjct: 209 LRRNLNLLTNLL-------LLMVEDGLPDWRS 233

Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 25/67 (37%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G  I + V  SD+++ +K +I+   G  V +Q+L+F G+ L   ++ + +YG+ DG+ L
Sbjct: 4   DGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVL-EDDTTLSEYGIQDGSTL 62

Query: 101 HLVLRLS 107
           HLVLRL 
Sbjct: 63  HLVLRLR 69

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G    + V   D++A +K +I +  G   ++Q+L++ G+ L + +  + DYG+ DG+ L
Sbjct: 6   TGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKIL-KDDKTLSDYGIQDGSTL 64

Query: 101 HLVLR 105
           HLVLR
Sbjct: 65  HLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L      + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNI 61

Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G  I + V  SD+++ +K +I    G   ++Q+L+++G+ L   +  + DYG+ DG+ +
Sbjct: 9   DGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVL-EDDRTLADYGIQDGSTI 67

Query: 101 HLVLR 105
           HLVLR
Sbjct: 68  HLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176395 cd01800, SF3a120_C, Ubiquitin-like domain of Mammalian splicing factor SF3a_120

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
            G ++   +  SD ++ +K++I    G    KQKL +EG  +  SNS    Y LA+G ++
Sbjct: 6   NGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAY-YNLANGTII 64

Query: 101 HLVLR 105
           HL L+
Sbjct: 65  HLQLK 69

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus. Length = 76

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNE 175
           T+ GK     V+    V  +K++I  K    + +  Q LI  G+ LED   +++   ++ 
Sbjct: 2   TLDGKTITLEVDPSDTVSELKEKIEDKEG--IPVDQQRLIFSGKVLEDDTTLSEYGIQDG 59

Query: 176 AVIHLLVR 183
           + +HL++R
Sbjct: 60  STLHLVLR 67

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|176398 cd01803, Ubiquitin, Ubiquitin

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains). Length = 76

>gnl|CDD|176401 cd01806, Nedd8, Nebb8-like ubiquitin protein

 Score = 40.9 bits (96), Expect = 8e-05
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D +  +K R++   G   ++Q+L++ G+++   +    DY L  G+VLH
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis. Length = 76

>gnl|CDD|176397 cd01802, AN1_N, ubiquitin-like domain of AN1

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 32  DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVR 90
           D++ +F+ ++ G+   +RV   +++ SVK +IQ   G  V +Q L++   EL      + 
Sbjct: 26  DTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYC-LN 84

Query: 91  DYGLADGNVLHLVLRL 106
           DY +++G  L LVL +
Sbjct: 85  DYNISEGCTLKLVLAM 100

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown. Length = 103

>gnl|CDD|234372 TIGR03843, TIGR03843, conserved hypothetical protein

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 40/158 (25%), Positives = 58/158 (36%), Gaps = 61/158 (38%)

Query: 325 GTRAGEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDL 384
           GT AG    REVAAY++            E  G+  VPPTV    L  G   P G     
Sbjct: 50  GTLAG----REVAAYLVS-----------EALGWGLVPPTV----LRDG---PFG----- 82

Query: 385 ENVKIGSLQMFVENVGSCE----------------------EMGPRAFPVDEVH----KI 418
                G +Q++++     +                      E G     V   H    ++
Sbjct: 83  ----PGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHADHPQLRRM 138

Query: 419 SVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCL 456
           +V D  + N DR  G++L   D  G++    +DHG C 
Sbjct: 139 AVFDALVNNADRKGGHVLPGPD--GRV--WGVDHGVCF 172

This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454. Length = 253

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T+ GK     V+    V  +K++IA+     +  + Q LI  G+ LED R + D  
Sbjct: 3   LTVKTLDGKTITLEVKPSDTVSELKEKIAE--LTGIPPEQQRLIYKGKVLEDDRTLADYG 60

Query: 172 KRNEAVIHLLVR 183
            ++ + IHL++R
Sbjct: 61  IQDGSTIHLVLR 72

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 59  KLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105
           K +I    G  V++Q+L++ GR L + +  + +Y + DG+ +HLV R
Sbjct: 27  KEKIAEEVGIPVEQQRLIYSGRVL-KDDETLSEYKVEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)

Query: 113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK 172
           TV T+ GK FE  V     V  +K +IA K  E V  + Q LI  G+ L+D + ++D   
Sbjct: 1   TVKTLTGKTFELEVSPDDTVAELKAKIAAK--EGVPPEQQRLIYAGKILKDDKTLSDYGI 58

Query: 173 RNEAVIHLLVR 183
           ++ + +HL++R
Sbjct: 59  QDGSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|185411 PTZ00044, PTZ00044, ubiquitin; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 52  SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
            +++  VK+ +Q   G  VK+ +L++ G++++    ++ DY +  G+ +H+VL+L
Sbjct: 20  DNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDL-KLSDYKVVPGSTIHMVLQL 73

Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	590
KOG2381	286	consensus Phosphatidylinositol 4-kinase [Signal tr	100.0
TIGR03843	253	conserved hypothetical protein. This model represe	100.0
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.66
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.6
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.57
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.56
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.56
PTZ00044	76	ubiquitin; Provisional	99.56
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.52
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.51
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.5
PTZ00044	76	ubiquitin; Provisional	99.5
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.5
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.49
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.49
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.49
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.48
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.48
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.47
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.45
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.44
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.44
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.44
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.43
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.43
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.43
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.42
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.41
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.4
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.4
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.4
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.39
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.39
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.38
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.38
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.37
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.36
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.35
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.34
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.33
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.33
KOG0003	128	consensus Ubiquitin/60s ribosomal protein L40 fusi	99.32
KOG0005	70	consensus Ubiquitin-like protein [Cell cycle contr	99.31
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.31
KOG0004	156	consensus Ubiquitin/40S ribosomal protein S27a fus	99.28
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.26
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.25
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.24
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.23
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.22
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.22
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.19
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.16
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.15
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.14
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.07
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.07
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.04
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.03
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.01
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.01
PF00454	235	PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina	98.98
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	98.93
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.91
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.89
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.8
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	98.79
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	98.79
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.75
KOG0010	493	consensus Ubiquitin-like protein [Posttranslationa	98.73
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.73
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	98.71
KOG0011	340	consensus Nucleotide excision repair factor NEF2,	98.71
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.71
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.69
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.67
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.59
KOG0001	75	consensus Ubiquitin and ubiquitin-like proteins [P	98.56
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.37
KOG3829	486	consensus Uncharacterized conserved protein [Funct	98.3
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.2
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.13
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.12
PLN02560	308	enoyl-CoA reductase	98.03
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	98.03
PLN02560	308	enoyl-CoA reductase	98.02
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.0
KOG4248	1143	consensus Ubiquitin-like protein, regulator of apo	97.99
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	97.88
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	97.85
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.72
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.63
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	97.6
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	97.54
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.5
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	97.46
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.45
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	97.03
KOG0006	446	consensus E3 ubiquitin-protein ligase (Parkin prot	96.99
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	96.95
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	96.65
cd05167	311	PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K),	96.26
KOG4495	110	consensus RNA polymerase II transcription elongati	96.15
PF07804	79	HipA_C: HipA-like C-terminal domain; InterPro: IPR	96.03
KOG3493	73	consensus Ubiquitin-like protein [Posttranslationa	95.96
cd00893	289	PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I	95.76
KOG0906	843	consensus Phosphatidylinositol 3-kinase VPS34, inv	95.71
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	95.56
PF06702	221	DUF1193: Protein of unknown function (DUF1193); In	95.51
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	95.27
cd05168	293	PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T	95.02
cd00891	352	PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic	94.98
KOG4495	110	consensus RNA polymerase II transcription elongati	94.9
cd00895	354	PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl	94.57
KOG1872	473	consensus Ubiquitin-specific protease [Posttransla	94.39
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	94.34
cd00896	350	PI3Kc_III Phosphoinositide 3-kinase (PI3K), class	94.24
PF13019	162	Telomere_Sde2: Telomere stability and silencing	94.12
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	93.95
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	93.66
KOG1769	99	consensus Ubiquitin-like proteins [Posttranslation	93.57
KOG0013	231	consensus Uncharacterized conserved protein [Funct	93.41
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	93.32
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	93.3
cd05174	361	PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c	93.26
KOG3206	234	consensus Alpha-tubulin folding cofactor B [Posttr	92.93
cd05166	353	PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I	92.71
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	92.71
cd05177	354	PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c	92.58
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	91.96
cd05173	362	PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl	91.95
cd05176	353	PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c	91.76
PF13019	162	Telomere_Sde2: Telomere stability and silencing	90.93
cd00894	365	PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c	90.83
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	90.59
cd05165	366	PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I,	90.47
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	90.32
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	89.9
PF09192	275	Act-Frag_cataly: Actin-fragmin kinase, catalytic;	89.68
KOG0013	231	consensus Uncharacterized conserved protein [Funct	89.55
COG5417	81	Uncharacterized small protein [Function unknown]	89.43
PF14533	213	USP7_C2: Ubiquitin-specific protease C-terminal; P	88.25
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	88.21
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	87.77
cd05124	238	AFK Actin-Fragmin Kinase (AFK); catalytic domain.	87.69
cd05175	366	PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c	87.42
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	87.09
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	86.85
KOG0903	847	consensus Phosphatidylinositol 4-kinase, involved	86.16
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	85.68
KOG1639	297	consensus Steroid reductase required for elongatio	84.34
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	83.88
KOG1639	297	consensus Steroid reductase required for elongatio	83.88
COG5417	81	Uncharacterized small protein [Function unknown]	83.77
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	82.93
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	82.61
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	82.09
PTZ00303	1374	phosphatidylinositol kinase; Provisional	82.03
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	81.03
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	80.54
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	80.27
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	80.04

>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-65  Score=520.78  Aligned_cols=280  Identities=45%  Similarity=0.749  Sum_probs=257.6

Q ss_pred             HHHHHHHHcCCCCcccCCCCCcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC-CcCCCccCCCchhh-hhh
Q 007773          260 SSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGE-GLKKGTRAGEGALR-EVA  337 (590)
Q Consensus       260 ~~~~~~~~~g~~p~~~~~Gs~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~-g~~~g~~~g~g~~r-EvA  337 (590)
                      .++..|++.|+.|++++.|++|+|||++..|. .+|||||+|||||+.+||+|+++...++ |+++|+++|+++.| |+|
T Consensus         2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~-~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~a   80 (286)
T KOG2381|consen    2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGW-IVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAA   80 (286)
T ss_pred             chHHHHhhcCCCcccccCCCchhHHHhccccc-eeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhh
Confidence            56788999999999999999999999999996 5999999999999999999999988655 89999999877777 999


Q ss_pred             hhhhccCCCCcccccccccCCCCCCceEEEEecccCccCCCCCCC--CCCCccceEEeecccccCCcccCCCCCCChhhh
Q 007773          338 AYILDHPRDATYSLHDEERGFAGVPPTVMVRCLHKGFNHPNGYKH--DLENVKIGSLQMFVENVGSCEEMGPRAFPVDEV  415 (590)
Q Consensus       338 AylLD~~~~~~~~~~~~~~gf~~VP~T~lv~~~~~~f~~~~~~~~--~~~~~k~GSlQ~fv~~~~~~~~~~~~~f~~~ev  415 (590)
                      ||||||+            +|+.||+|.+++++|+.|||++++..  .....|+||+|+||++ .++.|++++.|+++|+
T Consensus        81 ayLlD~~------------~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~  147 (286)
T KOG2381|consen   81 AYLLDHP------------EFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEV  147 (286)
T ss_pred             hhccCcc------------ccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEecccccc
Confidence            9999985            89999999999999999999987532  2333799999999999 7888999999999999


Q ss_pred             hheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHHhHH
Q 007773          416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDIE  495 (590)
Q Consensus       416 ~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~~  495 (590)
                      |||+||||||+|||||+|||||++..........+|||||||..+.+++|+|+|||||+.|||+++++||  |++..|.+
T Consensus       148 hkivvlD~ri~NtDRh~~N~lvk~~~~~~~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~  225 (286)
T KOG2381|consen  148 HKIVVLDIRIRNTDRHAGNWLVKKEPTLEQAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCN  225 (286)
T ss_pred             ceeEEEEEEeeccCCCCCceeEEeccCcccccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHH
Confidence            9999999999999999999999997444444666699999999999999999999999999999999999  99999999


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCC
Q 007773          496 LLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLP  560 (590)
Q Consensus       496 ~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~  560 (590)
                      ++|    +++++++++++++|+|+|+++++|||+.+||.+|+|+.+.. |.+|.+|.+|...+.+
T Consensus       226 ~~r----~l~~~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~-~~~~~~~~~~~~~~~~  285 (286)
T KOG2381|consen  226 LLR----ELPEDLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD-SKLEQLCVEAKASVVE  285 (286)
T ss_pred             HHH----HhHHHHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh-CccHHHHHhhhhcccC
Confidence            999    68899999999999999999999999999999999998877 9999999999876654

>TIGR03843 conserved hypothetical protein

Probab=100.00  E-value=1.3e-45  Score=364.63  Aligned_cols=198  Identities=28%  Similarity=0.414  Sum_probs=161.7

Q ss_pred             cccCCCCCcEEEEEeC-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCcccc
Q 007773          273 IPSSEGSGGAYFMQDS-SGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSL  351 (590)
Q Consensus       273 ~~~~~Gs~Gsyf~~~~-~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~~  351 (590)
                      -++.++||+||+|.-. +|....|||||..+|.++|+||+             ||+    |.||+|||+||         
T Consensus        10 gri~~aSN~t~~~~~~~~~~~~~~VYKPv~gErPLWDFpd-------------GtL----a~REvAAYlvs---------   63 (253)
T TIGR03843        10 GRLVDASNATLLCEVTLGGVSARAVYKPVRGERPLWDFPD-------------GTL----AGREVAAYLVS---------   63 (253)
T ss_pred             EEEccccceeEEEEEecCCeeEEEEECCcCCccccccCCC-------------Cch----HHHHHHHHHHH---------
Confidence            4688999999999943 45567899999999999999998             788    99999999999         


Q ss_pred             cccccCCCCCCceEEEEecccCccCCCCCCCCCCCccceEEeecccccCC--------cccCCCCCCCh-----------
Q 007773          352 HDEERGFAGVPPTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGS--------CEEMGPRAFPV-----------  412 (590)
Q Consensus       352 ~~~~~gf~~VP~T~lv~~~~~~f~~~~~~~~~~~~~k~GSlQ~fv~~~~~--------~~~~~~~~f~~-----------  412 (590)
                        +++||++||+|+++          +|      |.|+||+|.||+++.+        ++++++++|++           
T Consensus        64 --~~lGw~~VPpTvlr----------DG------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v  125 (253)
T TIGR03843        64 --EALGWGLVPPTVLR----------DG------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPV  125 (253)
T ss_pred             --HHhCCCcCCCeeee----------cC------CCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcce
Confidence              47899999999998          34      6899999999999754        56677888863           


Q ss_pred             -------hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHH
Q 007773          413 -------DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYI  485 (590)
Q Consensus       413 -------~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i  485 (590)
                             .++|||+|||++|+|+|||+||||+.++  |+  ++|||||||||++.+.+|   ++|+|+++|||+++++||
T Consensus       126 ~l~h~d~~~l~riaVfDi~inNaDRk~GhiL~~~d--g~--l~~IDHGl~f~~~~klrt---vlW~wag~Pls~e~l~~i  198 (253)
T TIGR03843       126 VLVHADHPQLRRMAVFDALVNNADRKGGHVLPGPD--GR--VWGVDHGVCFHVEPKLRT---VLWGWAGEPLPAELLADL  198 (253)
T ss_pred             eecccccHHHhhhhhheeeeecCCCCCCcEeEcCC--Cc--EEEecCceecCCCCcccc---cccccccCCCCHHHHHHH
Confidence                   3599999999999999999999999986  65  999999999999866555   899999999999999999


Q ss_pred             HccChHHhHHHHHhcCCCCC-HHHHHHHHHHHHHHHH
Q 007773          486 NALDAEKDIELLKFHGWDIP-PECARVLRISTMLLKK  521 (590)
Q Consensus       486 ~~Ld~~~d~~~l~~~~~~~~-~~~~~~l~~~t~~Lk~  521 (590)
                      ++|+.+.+-.+=++..-.|. +|...+.+.+..+|..
T Consensus       199 ~~L~~~l~~~l~~~L~~llt~~Ei~Al~~R~~~Ll~~  235 (253)
T TIGR03843       199 ARLRDDLDGDLGRELAELLTPEEVAALRRRVDRLLET  235 (253)
T ss_pred             HHHHHhhcChHHHHHHHhCCHHHHHHHHHHHHHHHhC
Confidence            99998885332222111133 4444555556666543

This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.66  E-value=3e-16  Score=139.30  Aligned_cols=92  Identities=23%  Similarity=0.269  Sum_probs=87.4

Q ss_pred             ccCcccccceeEEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCccccc
Q 007773           91 DYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI  170 (590)
Q Consensus        91 dygI~~gstL~LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy  170 (590)
                      -|.+.+-+++|+.+++++.|+|+||+..|+++.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+++|++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy   86 (103)
T cd01802           9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIP--VAQQHLIWNNMELEDEYCLNDY   86 (103)
T ss_pred             ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHc
Confidence            45677788999999999999999999999999999999999999999999999988  9999999999999999999999


Q ss_pred             CCCCCCEEEEEeec
Q 007773          171 CKRNEAVIHLLVRK  184 (590)
Q Consensus       171 ~I~~gsvI~L~vrk  184 (590)
                      +|+++++|||+++.
T Consensus        87 ~I~~~stL~l~~~l  100 (103)
T cd01802          87 NISEGCTLKLVLAM  100 (103)
T ss_pred             CCCCCCEEEEEEec
Confidence            99999999999874

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.60  E-value=2.4e-15  Score=125.22  Aligned_cols=73  Identities=22%  Similarity=0.324  Sum_probs=70.7

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+||+.+|+++.++|++++||++||++|+++.|++  +++|+|+|+|++|+|+++|++|+|+++++|+|++|.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVP--EEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence            7899999999999999999999999999999999998  999999999999999999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.57  E-value=6.8e-15  Score=122.65  Aligned_cols=74  Identities=18%  Similarity=0.332  Sum_probs=69.2

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+|+. +++++++|++++||++||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|++++++|+++++.++
T Consensus         1 mqi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~-D~~tL~~~~i~~~~tl~l~~~l~GG   74 (74)
T cd01793           1 MQLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLE-DDATLGQCGVEELCTLEVAGRLLGG   74 (74)
T ss_pred             CEEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            7899943 478999999999999999999999999999999999999998 8999999999999999999998764

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.56  E-value=8.6e-15  Score=130.03  Aligned_cols=78  Identities=29%  Similarity=0.536  Sum_probs=74.7

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .++|+|+| ++.|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++||++++++|+
T Consensus        25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~stL~l~~~l~GG  103 (103)
T cd01802          25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELE-DEYCLNDYNISEGCTLKLVLAMRGG  103 (103)
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence            57899999 899999999999999999999999999999999999999999998 8999999999999999999998764

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.56  E-value=7.5e-15  Score=122.29  Aligned_cols=72  Identities=25%  Similarity=0.470  Sum_probs=69.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      |+|+| +.+|++++++|++++||++||.+|+++.|+|+++|+|+|+|++|. |+.+|++|||+++++|||+++.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~l~l~~~~   73 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALA-DDKRLSDYSIGPNAKLNLVVRP   73 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCCHHHCCCCCCCEEEEEEcC
Confidence            79999 889999999999999999999999999999999999999999997 8999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>PTZ00044 ubiquitin; Provisional

Probab=99.56  E-value=8.9e-15  Score=122.00  Aligned_cols=75  Identities=23%  Similarity=0.533  Sum_probs=72.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +++|+++++++++++||++||.+|++..|+|+.+|+|+|+|+.|. |+.+|++|++++++++|+++++.|+
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~l~~~~i~~~~~i~l~~~~~gg   76 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMS-DDLKLSDYKVVPGSTIHMVLQLRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEcc-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence            79999 899999999999999999999999999999999999999999998 8999999999999999999998764

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.52  E-value=3.2e-14  Score=118.59  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+||+  +++++++|++++||++||++|+++.|+|  +++|+|+|+|++|+|+++|++|+++++++||+++|.
T Consensus         1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l   71 (74)
T cd01793           1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGID--VEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRL   71 (74)
T ss_pred             CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCC--HHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence            6899998  4789999999999999999999999988  999999999999999999999999999999999874

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.51  E-value=3.3e-14  Score=120.09  Aligned_cols=74  Identities=26%  Similarity=0.266  Sum_probs=69.9

Q ss_pred             ccceeeecccee-eEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKV-FEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~-~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+||+.+|++ +.++ +++++||++||++|++..|++  +++|+|+|+|+.|+|+++|++|+++++++|+|++|..
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~--~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE--PECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC--HHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            789999999997 6895 899999999999999999988  9999999999999999999999999999999998854

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.50  E-value=4.1e-14  Score=119.50  Aligned_cols=73  Identities=15%  Similarity=0.346  Sum_probs=69.0

Q ss_pred             EEEEE-EeCCeE-EEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           34 ILIFL-SVGGSV-IPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        34 M~I~V-tl~G~t-~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      |+|+| +++|++ +.++ +.+++||++||.+|++.+|+|+.+|+|+|+|+.|. |+.+|++|||+++++|+|++++.
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~-D~~tL~~y~i~~~~~i~l~~~~~   76 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQME-DGHTLFDYNVGLNDIIQLLVRQD   76 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence            89999 889986 6895 89999999999999999999999999999999998 89999999999999999999874

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>PTZ00044 ubiquitin; Provisional

Probab=99.50  E-value=6.4e-14  Score=116.82  Aligned_cols=73  Identities=25%  Similarity=0.336  Sum_probs=70.7

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+||+.+|+++.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|..+|++|+++++++||+.++.
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~   73 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGID--VKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQL   73 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEc
Confidence            7899999999999999999999999999999999988  999999999999999999999999999999999874

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.50  E-value=5.2e-14  Score=115.90  Aligned_cols=70  Identities=21%  Similarity=0.343  Sum_probs=67.3

Q ss_pred             ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |+||+.+|+++.++|++++||+++|++|+++.|++  +++|+|+|+|++|+|+.+|++|+++++++|||+.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVP--PDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            68999999999999999999999999999999988  99999999999999999999999999999999765

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.49  E-value=7.5e-14  Score=115.82  Aligned_cols=75  Identities=29%  Similarity=0.572  Sum_probs=71.6

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +++|+++.+++.+++||++||.+|++..|+|+..|+|+|+|+.|. |+.+|++|++++|++||++++++++
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~-d~~tl~~~~i~~g~~i~l~~~~~gg   76 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DDKTAADYKLEGGSVLHLVLALRGG   76 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEcc-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence            78999 889999999999999999999999999999999999999999997 8899999999999999999998764

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.49  E-value=5.5e-14  Score=117.17  Aligned_cols=73  Identities=23%  Similarity=0.367  Sum_probs=69.3

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+| ++.|++++++|++++||++||.+|++..|+|+++|+|+|+|+.|. |+.+|.+|||+++++++|++++.++
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~-D~~tL~~~~i~~~~tl~l~~~l~gg   74 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPME-DEHPLGEYGLKPGCTVFMNLRLRGG   74 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCCHHHcCCCCCCEEEEEEEccCC
Confidence            578 889999999999999999999999999999999999999999998 8899999999999999999988764

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01803 Ubiquitin Ubiquitin

Probab=99.49  E-value=7.5e-14  Score=115.85  Aligned_cols=75  Identities=36%  Similarity=0.625  Sum_probs=71.8

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +++|+++.+++++++||++||.+|++..|+|+..|+|+|+|+.|. |+.+|++|+++++++||+++++.|+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg   76 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEccCC
Confidence            78999 889999999999999999999999999999999999999999998 8899999999999999999998764

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.48  E-value=1.1e-13  Score=115.39  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=68.5

Q ss_pred             ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|||..|++++++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+++|++|+|+++++|+|.++.
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l   71 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRL   71 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEc
Confidence            68999999999999999999999999999999988  999999999999999999999999999999998874

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.48  E-value=1.3e-13  Score=115.10  Aligned_cols=76  Identities=21%  Similarity=0.286  Sum_probs=71.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+++.++|++++||.+||++|++..|+..|+++|+|+|+|+.|+|+.+|++|+++++++|++.++++
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~   76 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP   76 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence            7899999999999999999999999999999999981129999999999999999999999999999999998865

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=6.2e-15  Score=128.57  Aligned_cols=75  Identities=36%  Similarity=0.622  Sum_probs=72.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| ++.|+|++++++|++||.+||.+|+.++|+|+++|+|+|+|++|+ |..|+++|||+..+|+|++++|.++
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LE-D~~Tla~Y~i~~~~Tl~~~~rL~GG   76 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQKESTLHLVLRLRGG   76 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccc-cCCcccccCccchhhhhhhHHHhcC
Confidence            56777 999999999999999999999999999999999999999999998 9999999999999999999999887

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.45  E-value=2.5e-13  Score=114.63  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=70.9

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .|+|+| ++.|+.++++|++++||++||.+|+++.|+++++|+|+|.|+.|. |+ +|++|||++|++|+|+..+.++
T Consensus         1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~-d~-~L~~~gi~~~~~i~l~~~~~~~   76 (78)
T cd01804           1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLS-SG-KLQDLGLGDGSKLTLVPTVEAG   76 (78)
T ss_pred             CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCC-CC-cHHHcCCCCCCEEEEEeecccc
Confidence            489999 888999999999999999999999999999999999999999998 77 9999999999999999988765

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.44  E-value=3e-13  Score=112.21  Aligned_cols=74  Identities=26%  Similarity=0.388  Sum_probs=70.7

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+++.++|+++.||.+||++|++..|++  +++|+|+|+|+.|+|.++|++|+++++++||++++..
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~--~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~   74 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALR   74 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCC--hhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEcc
Confidence            6899999999999999999999999999999999988  9999999999999999999999999999999998743

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.44  E-value=2.2e-13  Score=113.66  Aligned_cols=71  Identities=21%  Similarity=0.183  Sum_probs=67.3

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      .|.|+| ++.|+.+.++|++++||++||.+|+++.|+++++|+|+|.|+.|. |+.+|++|||++|++|||..
T Consensus         1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~-D~~tL~~ygi~~~stv~l~~   72 (73)
T cd01791           1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHISLGDYEIHDGMNLELYY   72 (73)
T ss_pred             CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCC-CCCCHHHcCCCCCCEEEEEe
Confidence            388999 889999999999999999999999999999999999999999998 88999999999999999863

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.44  E-value=2.3e-13  Score=112.64  Aligned_cols=69  Identities=20%  Similarity=0.264  Sum_probs=65.9

Q ss_pred             ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      +.||+.+|+++.++|++++||+++|++|++.+|++  +++|+|+|+|+.|+|+.+|.+|+++++++||+.+
T Consensus         1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~--~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVD--PCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence            35788999999999999999999999999999988  9999999999999999999999999999999976

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.43  E-value=2.2e-13  Score=113.74  Aligned_cols=70  Identities=14%  Similarity=0.079  Sum_probs=67.6

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      |+|+|++..|+.+.++|++++||++||++|+++.|++  +++|+|+|+|+.|+|..+|++|+++++++|||.
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~--~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--hHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence            7899999999999999999999999999999999987  999999999999999999999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01803 Ubiquitin Ubiquitin

Probab=99.43  E-value=3.7e-13  Score=111.66  Aligned_cols=74  Identities=32%  Similarity=0.447  Sum_probs=70.8

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|..+|++|+++++++|+++++..
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~   74 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--HHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcc
Confidence            6899999999999999999999999999999999988  9999999999999999999999999999999998743

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.43  E-value=2.4e-13  Score=112.00  Aligned_cols=69  Identities=22%  Similarity=0.470  Sum_probs=65.6

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      |+| ++.|++++++|++++||++||.+|+++.|+|+.+|+|+|+|++|. |+.+|++|||++++++|++.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~-d~~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELR-NTTTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEeC
Confidence            577 789999999999999999999999999999999999999999997 899999999999999999864

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.42  E-value=4.2e-13  Score=110.17  Aligned_cols=72  Identities=28%  Similarity=0.343  Sum_probs=69.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |+|+||+.+|+++.+++++++||.+||++|++..|++  ++.|+|+|+|+.|+|+++|++|+++++++||++.|
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIP--VEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence            6899999999999999999999999999999999987  99999999999999999999999999999999764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.41  E-value=3.6e-13  Score=111.47  Aligned_cols=67  Identities=18%  Similarity=0.342  Sum_probs=63.8

Q ss_pred             EE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           37 FL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        37 ~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      .| .++|++++++|++++||++||.+|++.+|+|+.+|+|+|+|+.|. |+.+|.+|+|+++++|||++
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~-D~~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLT-DKTRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCCCCCCEEEEEe
Confidence            46 578999999999999999999999999999999999999999998 89999999999999999986

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.6e-13  Score=107.91  Aligned_cols=69  Identities=28%  Similarity=0.587  Sum_probs=66.7

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      |.|.| +++|+.+.++++|+|+|+.+|++|++++|||+.+|+|+|.|+++. |+.+-++|++.-|+++|++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~-DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMN-DDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccc-ccccHHHhhhccceeEeeC
Confidence            68999 999999999999999999999999999999999999999999998 8999999999999999985

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.40  E-value=7.4e-13  Score=110.60  Aligned_cols=72  Identities=19%  Similarity=0.438  Sum_probs=68.5

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCC--CccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGF--FVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      |+|+| +.+|+++.+++++++||.+||.+|++..|+  ++++|+|+|+|+.|. |+.+|++|||++|++|+++++-
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~-d~~~L~~~~i~~~~~i~~~~~~   75 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILK-DDTTLEEYKIDEKDFVVVMVSK   75 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEcc-CCCCHHHcCCCCCCEEEEEEec
Confidence            79999 899999999999999999999999999999  999999999999997 8899999999999999988753

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.40  E-value=7.1e-13  Score=108.84  Aligned_cols=71  Identities=28%  Similarity=0.488  Sum_probs=67.8

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      |+|+| ++.|+++++++++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++||+++|+++|++.+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~-d~~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLK-DDETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence            78999 889999999999999999999999999999999999999999997 889999999999999999764

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.39  E-value=5.7e-13  Score=112.82  Aligned_cols=74  Identities=23%  Similarity=0.193  Sum_probs=70.7

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEE--EECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL--ICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~L--if~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++..|+++.++|+++.||.+||++|++..+++  +++|+|  +|+|+.|+|+.+|++||++++++|+|++++-
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~--~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~~   78 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVP--AFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQNC   78 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCC--HHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEcc
Confidence            7899999999999999999999999999999999987  999999  8999999999999999999999999998854

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.39  E-value=9.3e-13  Score=111.15  Aligned_cols=72  Identities=14%  Similarity=0.225  Sum_probs=68.8

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+|++..|+.+.++|+++.||++||++|+++.+++  +++|+|+|+|+.|+|+ +|++||++++++|+|+...
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~--~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~   73 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVP--KERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTV   73 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCC--hHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeec
Confidence            8899999999999999999999999999999999987  9999999999999999 9999999999999998764

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.9e-13  Score=127.29  Aligned_cols=76  Identities=34%  Similarity=0.611  Sum_probs=73.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      |+|+| ++.++++++++.+++||..+|.+||..+|||+++|+|+|.|++|+ |+.+|+||+|+..+++||+++++++.
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe-dgrtlSDY~Iqkestl~l~l~l~Gg~   77 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGA   77 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc-cCCccccccccccceEEEEEEecCCc
Confidence            78999 999999999999999999999999999999999999999999998 89999999999999999999998873

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.38  E-value=1.1e-12  Score=108.51  Aligned_cols=71  Identities=24%  Similarity=0.298  Sum_probs=66.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      +.|+|++.+|+ ..++++++.||++||++|++..|++  +++|+|+|+|+.|+|+.+|++|+++++++|||++|
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKAN--QEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence            46899999997 5899999999999999999999987  99999999999999999999999999999999875

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.37  E-value=2.2e-12  Score=105.39  Aligned_cols=68  Identities=31%  Similarity=0.528  Sum_probs=65.1

Q ss_pred             eeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       115 kt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ||.+|+.+.++|+++.||.+||++|+...+++  +++|+|+|+|+.|+|..+|.+|+++++++|+|++++
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~--~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIP--PEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTST--GGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccc--cccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence            57899999999999999999999999999988  999999999999999999999999999999998874

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.36  E-value=1.3e-12  Score=109.52  Aligned_cols=70  Identities=27%  Similarity=0.476  Sum_probs=66.5

Q ss_pred             EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .++|++++++|++++||++||.+|+...|+|+.+|+|+|+|+.|. |+.+|++|+|+++++||++++++++
T Consensus         4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~~~i~~g~~l~v~~~~~gg   73 (76)
T cd01800           4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIK-DSNSLAYYNLANGTIIHLQLKERGG   73 (76)
T ss_pred             ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcC-CCCcHHHcCCCCCCEEEEEEecCCC
Confidence            468999999999999999999999999999999999999999997 8899999999999999999998764

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.35  E-value=2.2e-12  Score=109.20  Aligned_cols=71  Identities=20%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEE--EEcCcccccCCccccccCcccccceeEEee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKL--VFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrL--vf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      |+|+| ++.|+++.+++++++||++||.+|++..|+++++|+|  +|+|+.|. |+.+|++|||++|++|+++++
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~-D~~tL~~~gi~~gs~l~l~~~   76 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQ-DGVPLVSQGLGPGSTVLLVVQ   76 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCC-CCCCHHHcCCCCCCEEEEEEE
Confidence            89999 8899999999999999999999999999999999999  89999998 889999999999999999987

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.34  E-value=2.2e-12  Score=106.65  Aligned_cols=70  Identities=19%  Similarity=0.296  Sum_probs=65.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      |+|+| +..|+ ..+++++++||.+||.+|++..|+++.+|+|+|+|+.|. |+.+|++|||+++++||++++
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~-d~~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILK-DTDTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEEC
Confidence            56888 78887 489999999999999999999999999999999999998 889999999999999999874

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.33  E-value=2.9e-12  Score=106.23  Aligned_cols=68  Identities=25%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             ceeeec-cceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEE
Q 007773          112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLL  181 (590)
Q Consensus       112 I~Vkt~-~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~  181 (590)
                      |+|++. +|+++.++|++++||++||++|++..|+|  +++|+|+|+|+.|+|+ .+|++|+++++++|+|.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIP--ASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCC--HHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            578999 99999999999999999999999999988  9999999999999987 68999999999999974

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.33  E-value=2.6e-12  Score=106.50  Aligned_cols=67  Identities=24%  Similarity=0.420  Sum_probs=61.8

Q ss_pred             EEE-Ee-CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCC-ccccccCcccccceeEE
Q 007773           36 IFL-SV-GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLV  103 (590)
Q Consensus        36 I~V-tl-~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstL~Lv  103 (590)
                      |+| +. +|+++.++|++++||++||.+|++++|+|+++|+|+|+|++|. |+ .+|++|||++|++|+|.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~-D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELV-DNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEcc-CCcccHHHcCCCCCCEEEEe
Confidence            466 56 8899999999999999999999999999999999999999998 55 78999999999999874

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=1.8e-13  Score=119.47  Aligned_cols=72  Identities=33%  Similarity=0.470  Sum_probs=69.9

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |+|+|++++|+++.++|++++||.+||++|+.+.|++  +++|+|+|+|++|+|++|+++|+++..++||++.|
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~r   72 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR   72 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCC--HHHHHHHhcccccccCCcccccCccchhhhhhhHH
Confidence            5789999999999999999999999999999999998  99999999999999999999999999999999987

>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=1.1e-12  Score=103.09  Aligned_cols=70  Identities=26%  Similarity=0.384  Sum_probs=67.5

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      |.|.|+|++|+++.++++++++|..+|++|.++.|+|  |.+|+|+|.|+++.|+.+-.+|++..|++||++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCC--chhhhhhhccccccccccHHHhhhccceeEeeC
Confidence            5689999999999999999999999999999999999  999999999999999999999999999999984

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.31  E-value=5.6e-12  Score=102.96  Aligned_cols=67  Identities=30%  Similarity=0.659  Sum_probs=63.7

Q ss_pred             EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      +++|++++++|.+++||.+||.+|+.+.|+|++.|+|+|+|+.|. |+.+|.+|||+++++|+|+++.
T Consensus         2 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~-d~~tL~~~~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    2 TLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELD-DDKTLSDYGIKDGSTIHLVIKP   68 (69)
T ss_dssp             ETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEES-TTSBTGGGTTSTTEEEEEEESS
T ss_pred             CCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeeccc-CcCcHHHcCCCCCCEEEEEEec
Confidence            468999999999999999999999999999999999999999996 9999999999999999998864

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.2e-12  Score=120.23  Aligned_cols=72  Identities=33%  Similarity=0.475  Sum_probs=70.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |.|+|++++++++.++|++++||..+|++|+.++|||  +++|+|+|.|++|+|+++++||+|+..++|||+++
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp--~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~   72 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCC--chhhhhhhhhcccccCCccccccccccceEEEEEE
Confidence            6899999999999999999999999999999999999  99999999999999999999999999999999987

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.26  E-value=1.6e-11  Score=100.70  Aligned_cols=70  Identities=21%  Similarity=0.369  Sum_probs=65.5

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      |+|+|+..|+++.+++++++||++||.+|++.+|+|+..|+|+|+|+.|. |+.+|++|||++|++|+++.
T Consensus         1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~-d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERD-DAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccC-ccCcHHHcCCCCCCEEEEec
Confidence            57888667999999999999999999999999999999999999999997 88999999999999998863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.25  E-value=1.2e-11  Score=104.71  Aligned_cols=72  Identities=18%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             ccceeeecccee--eEEEeecCCcHHHHHHHHHHhcC-CCCCCCcEEEEECCEEcCCCCcccccC--CCCCCEEEEEe
Q 007773          110 QAITVTTVCGKV--FEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDIC--KRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~--~~i~Vd~s~TV~~LK~kI~~~~g-i~~~~~~Q~Lif~Gk~LeD~~tL~dy~--I~~gsvI~L~v  182 (590)
                      +.|+||+.+|++  |.++++++.||.+||++|++..+ .+ ++++|+|+|+|+.|+|..+|++|+  +.++.+|||+.
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCC-ChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence            578999999998  44555899999999999999875 33 379999999999999999999996  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.24  E-value=3e-11  Score=104.03  Aligned_cols=79  Identities=15%  Similarity=0.341  Sum_probs=74.8

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      ....|+|+| +.+|+++.++|.+++|+..||.+++++.|+++++|+|+|+|+.|. ++.|+.+|+++++++|++++++.+
T Consensus         8 ~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~-~~~T~~~l~m~d~d~I~v~l~l~G   86 (87)
T cd01763           8 ISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIR-DNQTPDDLGMEDGDEIEVMLEQTG   86 (87)
T ss_pred             CCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECC-CCCCHHHcCCCCCCEEEEEEeccc
Confidence            467899999 889999999999999999999999999999999999999999998 899999999999999999999876


Q ss_pred             c
Q 007773          109 L  109 (590)
Q Consensus       109 ~  109 (590)
                      +
T Consensus        87 G   87 (87)
T cd01763          87 G   87 (87)
T ss_pred             C
Confidence            4

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.23  E-value=2.7e-11  Score=101.40  Aligned_cols=69  Identities=16%  Similarity=0.370  Sum_probs=65.2

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE---cCcccccCCccccccCcccccceeEE
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      |.|.|+..|++++++|++++||++||++|++.+|+|+++|+|+|   .|+.|. |+.+|++|+|++|+.|+|+
T Consensus         1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~-D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAE-DDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCC-CCcCHHHcCCCCCCEEEEE
Confidence            56888899999999999999999999999999999999999996   899997 8999999999999999886

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.22  E-value=2.5e-11  Score=99.52  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=65.8

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      ++|+||+. |+.+.++|+++.||.+||++|++..|++  +++|+|+|+|+.|+|.++|++|++++|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~--~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVE--PRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCC--hHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence            46889986 9999999999999999999999999988  9999999999999999999999999999999863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.22  E-value=3.3e-11  Score=101.08  Aligned_cols=67  Identities=19%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ++|++++++|++++||.+||++|+...|++  +++|+|+|+|+.|+|+++|++|+++++++|+++++..
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~   71 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMP--AGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKER   71 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecC
Confidence            478999999999999999999999999988  9999999999999999999999999999999998853

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.19  E-value=3.4e-11  Score=101.87  Aligned_cols=71  Identities=15%  Similarity=0.280  Sum_probs=62.4

Q ss_pred             CEEEEE-EeCCeE--EEEEecCCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCccccccC--cccccceeEEe
Q 007773           33 SILIFL-SVGGSV--IPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYG--LADGNVLHLVL  104 (590)
Q Consensus        33 sM~I~V-tl~G~t--~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dyg--I~~gstL~Lvl  104 (590)
                      .|.|+| +.++++  +.+++++++||.+||++|++..+  .++++|+|+|.|+.|. |+.+|++|+  +.++.++||+.
T Consensus         1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLk-D~~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLP-DHLKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeecc-chhhHHHHhhcccCCceEEEEe
Confidence            378899 788888  55556899999999999999874  5589999999999997 899999996  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.16  E-value=7.4e-11  Score=99.03  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             EEEE--E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcc-cccceeEEe
Q 007773           35 LIFL--S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-DGNVLHLVL  104 (590)
Q Consensus        35 ~I~V--t-l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-~gstL~Lvl  104 (590)
                      .++|  + ..|.+++++|.+++||++||.+|+.++|+|+++|+| |+|+.|.+|+.+|++||++ +|+++||.+
T Consensus         2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            4555  2 457899999999999999999999999999999999 9999997677999999998 789999865

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.15  E-value=1.5e-10  Score=99.73  Aligned_cols=76  Identities=13%  Similarity=0.262  Sum_probs=72.0

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      +..|.|+|++.+|+.+.++|.+++++..||++++++.|++  +++|+|+|+|+.|+++.|+.+|+++++++|+++++.
T Consensus         9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~--~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l   84 (87)
T cd01763           9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLS--MNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQ   84 (87)
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCC--ccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEec
Confidence            4458899999999999999999999999999999999998  999999999999999999999999999999999874

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.14  E-value=9.5e-11  Score=125.86  Aligned_cols=76  Identities=20%  Similarity=0.317  Sum_probs=71.6

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcC---CCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g---i~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      |+|+|||.+|+++.|+|++++||.+||++|+...|   ++  +++|+|+|+|+.|+|+++|.+|+|+++++|++++.++.
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~k   78 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKPK   78 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccCC
Confidence            78999999999999999999999999999999988   76  99999999999999999999999999999999988654


Q ss_pred             C
Q 007773          187 K  187 (590)
Q Consensus       187 k  187 (590)
                      .
T Consensus        79 ~   79 (378)
T TIGR00601        79 T   79 (378)
T ss_pred             C
Confidence            4

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.07  E-value=1.5e-10  Score=96.92  Aligned_cols=55  Identities=20%  Similarity=0.346  Sum_probs=49.8

Q ss_pred             ecC-CCCHHHHHHHHHHhh--CCC-ccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           49 VME-SDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        49 V~~-sdTV~~LK~kIq~~~--Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      |+| ++||.+||.+|+++.  |++ +++|+|+|+|++|. |+.+|++|||++|++|||+.
T Consensus        16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~-D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLK-DDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCC-CCCcHHHcCCCCCCEEEEEe
Confidence            444 899999999999995  575 99999999999997 89999999999999999975

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.07  E-value=3.3e-10  Score=94.81  Aligned_cols=69  Identities=19%  Similarity=0.202  Sum_probs=63.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE---CCEEcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      |.|.|+ ..|+++.++|++++||++||++|++..|+|  +++|+|+|   +|+.|+|..+|++|++++++.|+|+
T Consensus         1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp--~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813           1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVL--PERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCC--HHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            356666 578999999999999999999999999988  99999996   9999999999999999999999986

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>smart00213 UBQ Ubiquitin homologues

Probab=99.04  E-value=4.6e-10  Score=89.36  Aligned_cols=63  Identities=27%  Similarity=0.581  Sum_probs=58.5

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN   98 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs   98 (590)
                      |+|+| +.+ .++.++|++++||++||.+|+...|+|+..|+|+|+|+.|. |+.+|.+|||++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~-d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLE-DDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECC-CCCCHHHcCCcCCC
Confidence            68999 555 79999999999999999999999999999999999999998 88999999999874

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>smart00213 UBQ Ubiquitin homologues

Probab=99.03  E-value=4.7e-10  Score=89.31  Aligned_cols=64  Identities=27%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA  176 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs  176 (590)
                      |+|+||+.+ +.+.++|+++.||++||++|+...+++  ++.|+|+|+|+.|.|+.+|++|++++++
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~--~~~~~L~~~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIP--VEQQRLIYKGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence            678999988 789999999999999999999999987  8999999999999999999999998875

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.01  E-value=4.6e-10  Score=120.65  Aligned_cols=72  Identities=17%  Similarity=0.437  Sum_probs=68.2

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~G---ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      |+|+| ++.|+++.|+|++++||.+||.+|+...|   +++.+|+|+|+|+.|. |+.+|++|+|+++++|+++++-
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~-Dd~tL~dy~I~e~~~Ivvmv~k   76 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILS-DDKTVREYKIKEKDFVVVMVSK   76 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECC-CCCcHHHcCCCCCCEEEEEecc
Confidence            89999 89999999999999999999999999998   9999999999999998 8899999999999999887653

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.01  E-value=4.1e-10  Score=94.27  Aligned_cols=54  Identities=28%  Similarity=0.273  Sum_probs=48.8

Q ss_pred             cCCcHHHHHHHHHHhc--CCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          128 RGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       128 ~s~TV~~LK~kI~~~~--gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      .++||.+||++|+++.  +++ ++++|+|+|+|+.|+|+++|++|+|+++++|||+.
T Consensus        19 ~~~TV~~LK~kI~~~~~egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~   74 (75)
T cd01815          19 GGYQVSTLKQLIAAQLPDSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR   74 (75)
T ss_pred             ccCcHHHHHHHHHHhhccCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence            3679999999999996  453 38999999999999999999999999999999974

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.98  E-value=2.5e-12  Score=129.01  Aligned_cols=159  Identities=27%  Similarity=0.277  Sum_probs=82.1

Q ss_pred             ccCCCchhhhhhhhhhccCCCCccc--ccccccCCCCCCceEEEEecccCccCCCCC------CCCCCCccceEEeeccc
Q 007773          326 TRAGEGALREVAAYILDHPRDATYS--LHDEERGFAGVPPTVMVRCLHKGFNHPNGY------KHDLENVKIGSLQMFVE  397 (590)
Q Consensus       326 ~~~g~g~~rEvAAylLD~~~~~~~~--~~~~~~gf~~VP~T~lv~~~~~~f~~~~~~------~~~~~~~k~GSlQ~fv~  397 (590)
                      ++.++++.+++++|.+...-+..+.  .-+....+..|+.|...+..+..+++....      .......+.++.|.|+.
T Consensus        28 ~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  107 (235)
T PF00454_consen   28 ILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFLK  107 (235)
T ss_dssp             HHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHHH
T ss_pred             HHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHHh
Confidence            3456778888999999842100000  000111233333333333333333322110      11234567899999999


Q ss_pred             ccCCcccCC-CCCCChhhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCC----CCCCCCcccccccCc
Q 007773          398 NVGSCEEMG-PRAFPVDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLP----YSFEDCTFDWLYWPQ  472 (590)
Q Consensus       398 ~~~~~~~~~-~~~f~~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp----~~~~~~~f~W~~wpq  472 (590)
                      ...+++++. ....-..+++.++|+||+++|.|||.+|||+... +|+  +++||||+||+    ..++..+|.|--   
T Consensus       108 ~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~-~g~--~~hIDfg~~f~~~~~~~~e~vPFrLT~---  181 (235)
T PF00454_consen  108 SFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK-TGE--LIHIDFGFIFGGKHLPVPETVPFRLTR---  181 (235)
T ss_dssp             HSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET-TSE--EEE--HSSCTTHHHGSSSS--SSTTHH---
T ss_pred             cCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc-cce--eeeEEeHHhhhccccCCCCCCCeEeCH---
Confidence            988876654 3333477899999999999999999999999542 366  99999999999    557777877733   


Q ss_pred             CCCCCCHHHHHHHHcc----ChHHhHHHHHhc
Q 007773          473 ARQPYSPETINYINAL----DAEKDIELLKFH  500 (590)
Q Consensus       473 a~~Pfs~~~~~~i~~L----d~~~d~~~l~~~  500 (590)
                                +.+..+    ++..+...++..
T Consensus       182 ----------~~~~~~~~~l~~~~~~g~f~~~  203 (235)
T PF00454_consen  182 ----------NMVNAMGGYLGPSGVEGLFRSS  203 (235)
T ss_dssp             ----------HHHHHTTTSSSTSHHHHHHHHH
T ss_pred             ----------HHHHHHhccCCCchhHhHHHHH
Confidence                      344444    777777777753

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=98.93  E-value=2.1e-09  Score=90.28  Aligned_cols=64  Identities=17%  Similarity=0.064  Sum_probs=58.4

Q ss_pred             eccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCC-CCCEEEEEe
Q 007773          116 TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKR-NEAVIHLLV  182 (590)
Q Consensus       116 t~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~-~gsvI~L~v  182 (590)
                      ...|.++.++|++++||++||++|+++.|++  +++|+| |+|+.|. |.++|++|+++ +|++++|.+
T Consensus         9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~   74 (75)
T cd01799           9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI   74 (75)
T ss_pred             ccCCCeEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence            3568899999999999999999999999998  999999 9999985 77999999998 889999864

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.91  E-value=2e-09  Score=93.70  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=59.2

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      ..++.|++++||.+||.+|++++++++.+|+|.|+|+.|.+|.+||++|||..+++|+|.+..
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide   78 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE   78 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence            467789999999999999999999999999999999999988999999999999999998754

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.89  E-value=1.7e-09  Score=96.60  Aligned_cols=76  Identities=14%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             ccceeeeccceee-EEEeecCCcHHHHHHHHHHhc-----CCCCCCCcEEEEECCEEcCCCCcccccC------CCCCCE
Q 007773          110 QAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKG-----REFVDLKNQELICDGEELEDQRLITDIC------KRNEAV  177 (590)
Q Consensus       110 m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~~~~-----gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~------I~~gsv  177 (590)
                      +.|.+|..+|..+ ++.+++++||.+||++|++..     ++|.++++|+|+|.|+.|+|++||++|+      +....|
T Consensus         5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T   84 (113)
T cd01814           5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT   84 (113)
T ss_pred             EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence            3444555555333 367789999999999999555     4444589999999999999999999999      777899


Q ss_pred             EEEEeecC
Q 007773          178 IHLLVRKS  185 (590)
Q Consensus       178 I~L~vrks  185 (590)
                      +|+++|.+
T Consensus        85 mHvvlr~~   92 (113)
T cd01814          85 MHVVVQPP   92 (113)
T ss_pred             EEEEecCC
Confidence            99999965

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.80  E-value=1.5e-08  Score=81.64  Aligned_cols=67  Identities=31%  Similarity=0.469  Sum_probs=62.8

Q ss_pred             eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      |+..+|+.+.+.+.++.||++||++|+...+++  ++.|+|+|+|+.|+|..+|.+|++.++++|++..
T Consensus         2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVP--PEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             eEccCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence            667789999999999999999999999999987  9999999999999999999999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=98.79  E-value=5.3e-09  Score=93.46  Aligned_cols=75  Identities=20%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             CCEEEEE-EeCC-eEEEEEecCCCCHHHHHHHHH-----HhhCCC--ccceEEEEcCcccccCCccccccC------ccc
Q 007773           32 DSILIFL-SVGG-SVIPMRVMESDSIASVKLRIQ-----SYNGFF--VKKQKLVFEGRELARSNSRVRDYG------LAD   96 (590)
Q Consensus        32 ~sM~I~V-tl~G-~t~~l~V~~sdTV~~LK~kIq-----~~~Gip--~~~QrLvf~Gk~L~~D~~tL~dyg------I~~   96 (590)
                      +.+.|.+ ..+| ..=+..+.+++||++||++|+     .++|+|  +++|+|+|+|+.|. |+.||++|+      +..
T Consensus         3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLe-D~~TL~d~~~p~g~~~~~   81 (113)
T cd01814           3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILE-NSKTVGECRSPVGDIAGG   81 (113)
T ss_pred             ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecC-CCCcHHHhCCcccccCCC
Confidence            5567777 4456 466778899999999999999     445566  99999999999998 999999999      777


Q ss_pred             ccceeEEeeec
Q 007773           97 GNVLHLVLRLS  107 (590)
Q Consensus        97 gstL~LvlrLs  107 (590)
                      ..|+|++++.+
T Consensus        82 ~~TmHvvlr~~   92 (113)
T cd01814          82 VITMHVVVQPP   92 (113)
T ss_pred             ceEEEEEecCC
Confidence            89999999875

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.79  E-value=6.6e-09  Score=112.60  Aligned_cols=74  Identities=23%  Similarity=0.281  Sum_probs=69.6

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .++|+|||.++ ++.+.|..+.||.++|+.|++.++++  +++++|+|.||+|+|+.+|..|+|++|.|||||++..
T Consensus        15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~--~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAP--PDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCC--hhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence            47899999888 89999999999999999999999988  9999999999999999999999999999999987744

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.75  E-value=2.8e-08  Score=81.95  Aligned_cols=71  Identities=21%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC-CcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL-KNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~-~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      |+|+|++.+|+.+.+.|.++.++..|+++.+++.+++  . ++.+|+|+|+.|.++.|+.+|+++++++|++.+
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~--~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIP--PEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTT--T-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCC--ccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence            5789999999999999999999999999999999988  7 999999999999999999999999999999863

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.73  E-value=1.3e-08  Score=110.33  Aligned_cols=75  Identities=23%  Similarity=0.382  Sum_probs=69.0

Q ss_pred             CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      ..++|+|+..+..+.+.|..+.||.+||++|...+++++++|+|+|.||+|+ |+.+|..|||++|.|||||++..
T Consensus        14 ~~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILK-D~dTL~~~gI~Dg~TvHLVik~~   88 (493)
T KOG0010|consen   14 SLIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILK-DDDTLKQYGIQDGHTVHLVIKSQ   88 (493)
T ss_pred             ceeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCcccc-ChhhHHHcCCCCCcEEEEEeccC
Confidence            5689999444449999999999999999999999999999999999999998 99999999999999999998864

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.73  E-value=2.2e-08  Score=103.76  Aligned_cols=77  Identities=22%  Similarity=0.294  Sum_probs=71.5

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      |.|+|||+.|.+|+++|.+++||..+|++|+...|-.-|...|+|+|+|+.|.|..++..|++.++..|.+++.|+.
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~k   77 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKDK   77 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecCc
Confidence            68999999999999999999999999999999999333499999999999999999999999999999999988775

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=98.71  E-value=3.4e-08  Score=79.61  Aligned_cols=65  Identities=32%  Similarity=0.656  Sum_probs=60.3

Q ss_pred             EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ..+|+.+.+++.++.||.+||.+|+...|+|+..|+|+|+|+.|. |+.+|.+|++.++++|++..
T Consensus         4 ~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~-d~~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           4 TLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILK-DDKTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             ccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCC-CcCCHHHCCCCCCCEEEEEE
Confidence            346889999999999999999999999999999999999999997 89999999999999998764

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]

Probab=98.71  E-value=1.8e-08  Score=104.51  Aligned_cols=73  Identities=19%  Similarity=0.439  Sum_probs=68.6

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      |+|+| ++.++++++++.|++||.++|.+|+...|  +|+.+|+|+|+|+.|. |+.++.+|+|.+++.|.+++.-+
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~-D~~tv~Eykv~E~~fiVvMlsK~   76 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILK-DETTVGEYKVKEKKFIVVMLSKD   76 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceecc-CCcchhhhccccCceEEEEEecC
Confidence            78999 99999999999999999999999999999  9999999999999998 99999999999999888776543

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.71  E-value=6.8e-08  Score=82.79  Aligned_cols=70  Identities=17%  Similarity=0.328  Sum_probs=60.0

Q ss_pred             EEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE-EcCc-----ccccCCccccccCcccccceeEE
Q 007773           34 ILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEGR-----ELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~Vtl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f~Gk-----~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      +.|+|+.+  ......++.++.||.+||.+++..+|+++..|+|. |.|+     .|.+|+.+|.+||+++|.+||++
T Consensus         2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv   79 (84)
T cd01789           2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI   79 (84)
T ss_pred             EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence            45666443  55667779999999999999999999999999995 7888     57668899999999999999986

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.69  E-value=3.5e-08  Score=86.10  Aligned_cols=62  Identities=23%  Similarity=0.120  Sum_probs=57.3

Q ss_pred             eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCCCCCEEEEEee
Q 007773          120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~~gsvI~L~vr  183 (590)
                      +...++|++++||++||.+|+++++++  |++|+|.|+|+.|. |.+||++|++..+++|.|.+.
T Consensus        15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~--P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          15 GEKALLVSANQTLKELKIQIMHAFSVA--PFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CCceEEeCccccHHHHHHHHHHHhcCC--cccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            356788999999999999999999988  99999999999995 589999999999999999875

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.67  E-value=7e-08  Score=79.53  Aligned_cols=70  Identities=23%  Similarity=0.470  Sum_probs=64.0

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCc-cceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~-~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      |+|+| ..+|+.+.+.|.+++++..|+.+..++.|++. +..+|+|.|+.|. ++.|+++||+++|++|++++
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~-~~~T~~~~~ied~d~Idv~I   72 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLD-PNDTPEDLGIEDGDTIDVII   72 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE--TTSCHHHHT-STTEEEEEE-
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcC-CCCCHHHCCCCCCCEEEEEC
Confidence            78899 78899999999999999999999999999999 9999999999997 88999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.59  E-value=1.8e-07  Score=74.89  Aligned_cols=71  Identities=38%  Similarity=0.700  Sum_probs=66.7

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      +++ ++.|+++.+++.++++|..+|.+|+...|++.++|++.+.|+.|+ |+.++.+|+|..+++++++.++.
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~-d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLE-DGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECc-CCCcHHHhCCCCCCEEEEEEecC
Confidence            456 789999999999999999999999999999999999999999998 88999999999999999988765

>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]

Probab=98.56  E-value=3.8e-07  Score=73.04  Aligned_cols=72  Identities=29%  Similarity=0.400  Sum_probs=67.3

Q ss_pred             ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +++++..|+.+.+.+.++++|..+|.+|+...+++  .++|++.+.|+.|+|..++.+|+|..++++++..+..
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~   73 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIP--VDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR   73 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCC--CeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence            56788899999999999999999999999999988  8999999999999999999999999999999987643

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.37  E-value=1.5e-06  Score=74.73  Aligned_cols=70  Identities=20%  Similarity=0.451  Sum_probs=57.3

Q ss_pred             EEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC-------cccccCCccccccCcccccceeEE
Q 007773           34 ILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~Vtl~G---~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G-------k~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      +.|+|+.+.   .....++.++.||++||.+|+..+|+|+..|+|.+..       ..+.+|..+|.+||+++|.+||+.
T Consensus         2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            567775443   4899999999999999999999999999999999861       125668899999999999999874

>KOG3829 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2e-06  Score=91.40  Aligned_cols=169  Identities=23%  Similarity=0.285  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHcCCCCc-ccCCCCCcE---EEEEeCCCCeEEEEEecCC----CCCCCCCCCCCCCCCCCCCCcCCCccC
Q 007773          257 RLISSTVDGLERGNEPI-PSSEGSGGA---YFMQDSSGQKYISVFKPMD----EEPMSVNNPRGLPISVDGEGLKKGTRA  328 (590)
Q Consensus       257 ~~~~~~~~~~~~g~~p~-~~~~Gs~Gs---yf~~~~~g~~~~aVFKP~d----eEp~~~~nP~~~~~~~~~~g~~~g~~~  328 (590)
                      .++..+..++..  .|+ .+..+-+||   ..++=++++  -|||||..    ||-...  +  |      .||-|    
T Consensus       151 ~~~~alL~~l~~--~pI~~v~v~~~GtqLKlll~~~~~~--KavfKPmR~~Rd~~~~~~--y--f------s~~dR----  212 (486)
T KOG3829|consen  151 QSMGALLHALRT--EPITRVSVLGRGTQLKLLLRLSHQQ--KVVFKPMRYPRDEVIDGM--Y--Y------SGFDR----  212 (486)
T ss_pred             hhHHHHHHHhhc--CcceEEeecCCceEEEEEEEecCCc--eeeeccccCCccccCCCc--c--c------ccccc----
Confidence            556666666654  344 234444454   445555554  59999953    332211  1  1      12322    


Q ss_pred             CCchhhhhhhhhhccCCCCcccccccccCCCCCCceEEEEe--cc-----------cCccCCCCC---------------
Q 007773          329 GEGALREVAAYILDHPRDATYSLHDEERGFAGVPPTVMVRC--LH-----------KGFNHPNGY---------------  380 (590)
Q Consensus       329 g~g~~rEvAAylLD~~~~~~~~~~~~~~gf~~VP~T~lv~~--~~-----------~~f~~~~~~---------------  380 (590)
                         ---||||+=||+           .|||..+|||+=+-+  .-           .+|+.+.+.               
T Consensus       213 ---HnAEiAAFHLDR-----------iL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~  278 (486)
T KOG3829|consen  213 ---HNAEVAAFHLDR-----------VLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTE  278 (486)
T ss_pred             ---cchhhhhhhhhh-----------hhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCc
Confidence               356999999996           799999999964322  11           234443221               


Q ss_pred             --CCCCCCccceEEeecccccCCccc-CCCC------------CCC--------------------hhhhhheeeeeeee
Q 007773          381 --KHDLENVKIGSLQMFVENVGSCEE-MGPR------------AFP--------------------VDEVHKISVLDIRL  425 (590)
Q Consensus       381 --~~~~~~~k~GSlQ~fv~~~~~~~~-~~~~------------~f~--------------------~~ev~ki~ilD~~i  425 (590)
                        .+..+..+.||+|.|+++....-. ..++            .|.                    .-++=.|+||||+|
T Consensus       279 ~avCg~pdmlEGS~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLi  358 (486)
T KOG3829|consen  279 EAVCGDPDMLEGSLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLI  358 (486)
T ss_pred             ccccCCcccccceEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHh
Confidence              122558899999999998432211 0111            011                    12467899999999


Q ss_pred             ecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773          426 ANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS  459 (590)
Q Consensus       426 ~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~  459 (590)
                      .|.|||.=--.-..  ++.--++-+|||-+|-..
T Consensus       359 GN~DRHHYEtF~~f--~d~s~~ihLDngr~FGrp  390 (486)
T KOG3829|consen  359 GNMDRHHYETFEVF--GDLSFLIHLDNGRAFGRP  390 (486)
T ss_pred             cccchhhhhhhhcc--CCcceEEEeccccccCCC
Confidence            99999964322111  233569999999999743

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.20  E-value=5.9e-06  Score=70.82  Aligned_cols=64  Identities=20%  Similarity=0.262  Sum_probs=55.1

Q ss_pred             ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE-ECCE-----Ec-CCCCcccccCCCCCCEEEEEeec
Q 007773          119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI-CDGE-----EL-EDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li-f~Gk-----~L-eD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      .......+.++.||.+||+++...+|++  +..|+|. |.|+     .| +|.++|+.|++++|..||++-..
T Consensus        12 ~~~~ekr~~~~~Tv~~lK~kl~~~~G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~   82 (84)
T cd01789          12 SFSFEKKYSRGLTIAELKKKLELVVGTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVS   82 (84)
T ss_pred             ceeeeEecCCCCcHHHHHHHHHHHHCCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCC
Confidence            4455566999999999999999999998  9999995 8888     45 78899999999999999997543

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.13  E-value=6e-06  Score=73.96  Aligned_cols=74  Identities=18%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCc-------ccccceeEEeee
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-------ADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-------~~gstL~LvlrL  106 (590)
                      |-|.|.....++.+++.++.||.+||++|+.....|+..|+|+-.+..|+ |+.||+|||+       +...+|-|.+|-
T Consensus         3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLe-D~kTL~d~g~t~~~akaq~pA~vgLa~r~   81 (119)
T cd01788           3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLD-DGKTLGDCGFTSQTARPQAPATVGLAFRS   81 (119)
T ss_pred             eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeec-ccccHHHcCccccccccCCCCeEEEEEec
Confidence            34445667789999999999999999999999999999999996666776 9999999999       667788887775


Q ss_pred             cc
Q 007773          107 SD  108 (590)
Q Consensus       107 sd  108 (590)
                      .+
T Consensus        82 ~d   83 (119)
T cd01788          82 SD   83 (119)
T ss_pred             CC
Confidence            43

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.12  E-value=1.9e-05  Score=71.32  Aligned_cols=78  Identities=24%  Similarity=0.302  Sum_probs=57.0

Q ss_pred             ccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcC-----CCCCCCcEEEEECCEEcCCCCcccccCCCCCC------E
Q 007773          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGR-----EFVDLKNQELICDGEELEDQRLITDICKRNEA------V  177 (590)
Q Consensus       110 m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~g-----i~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs------v  177 (590)
                      +.|.++-.+|. ...+..+++.||++||++|....-     .+..+.+.+|+|.|+.|+|..+|+++.+..+.      +
T Consensus         3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v   82 (111)
T PF13881_consen    3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV   82 (111)
T ss_dssp             EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred             EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence            34445556788 778899999999999999998752     23346799999999999999999999876554      7


Q ss_pred             EEEEeecCCC
Q 007773          178 IHLLVRKSAK  187 (590)
Q Consensus       178 I~L~vrks~k  187 (590)
                      +||+++...-
T Consensus        83 mHlvvrp~~~   92 (111)
T PF13881_consen   83 MHLVVRPNAP   92 (111)
T ss_dssp             EEEEE-SSSS
T ss_pred             EEEEecCCCC
Confidence            9999986643

>PLN02560 enoyl-CoA reductase

Probab=98.03  E-value=9.1e-06  Score=85.66  Aligned_cols=68  Identities=26%  Similarity=0.492  Sum_probs=58.7

Q ss_pred             EEEEE-EeCCeEE---EEEecCCCCHHHHHHHHHHhhCC-CccceEEEEc---Cc----ccccCCccccccCccccccee
Q 007773           34 ILIFL-SVGGSVI---PMRVMESDSIASVKLRIQSYNGF-FVKKQKLVFE---GR----ELARSNSRVRDYGLADGNVLH  101 (590)
Q Consensus        34 M~I~V-tl~G~t~---~l~V~~sdTV~~LK~kIq~~~Gi-p~~~QrLvf~---Gk----~L~~D~~tL~dygI~~gstL~  101 (590)
                      |+|.| ..+|+.+   +++++++.||++||.+|+++.++ ++++|+|.+.   |+    .|. |+.+|++||++++++|+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~-d~ktL~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLD-DSKSLKDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccC-CCCCHHhcCCCCCceEE
Confidence            67888 6678876   89999999999999999999986 8999999983   43    676 88899999999999865


Q ss_pred             E
Q 007773          102 L  102 (590)
Q Consensus       102 L  102 (590)
                      +
T Consensus        80 ~   80 (308)
T PLN02560         80 F   80 (308)
T ss_pred             E
Confidence            4

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=5e-06  Score=96.73  Aligned_cols=70  Identities=26%  Similarity=0.478  Sum_probs=67.0

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      +.| |++.++.++.|...+||.++|..|.++.+|+..+|||+|+|+.|. |++++++|+| +|.+|||+-|.+
T Consensus         5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~-~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQ-DDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeec-cchhhhhccC-CCeEEEeeccCC
Confidence            778 899999999999999999999999999999999999999999998 9999999999 999999998853

>PLN02560 enoyl-CoA reductase

Probab=98.02  E-value=9.5e-06  Score=85.53  Aligned_cols=70  Identities=19%  Similarity=0.285  Sum_probs=61.1

Q ss_pred             ccceeeeccceee---EEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC-------CEEcCCCCcccccCCCCCCEEE
Q 007773          110 QAITVTTVCGKVF---EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD-------GEELEDQRLITDICKRNEAVIH  179 (590)
Q Consensus       110 m~I~Vkt~~Gk~~---~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~-------Gk~LeD~~tL~dy~I~~gsvI~  179 (590)
                      |.|+|++.+|+.+   +++++++.||++||++|+++.+.. ++++|+|.+.       |+.|+|+.+|.|++++++++|+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~-~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKY-YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCC-ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE
Confidence            6788888888887   799999999999999999998862 2899999983       3488999999999999999988


Q ss_pred             E
Q 007773          180 L  180 (590)
Q Consensus       180 L  180 (590)
                      +
T Consensus        80 ~   80 (308)
T PLN02560         80 F   80 (308)
T ss_pred             E
Confidence            6

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.00  E-value=1.6e-05  Score=71.23  Aligned_cols=63  Identities=19%  Similarity=0.154  Sum_probs=57.2

Q ss_pred             eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-------CCCCEEEEEeecC
Q 007773          121 VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-------RNEAVIHLLVRKS  185 (590)
Q Consensus       121 ~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-------~~gsvI~L~vrks  185 (590)
                      ++-++++.+.||.+||++|+.....+  +++|+|+-.+..|+|.+||+|||+       ++.+++-|.+|+.
T Consensus        13 TiF~dakes~tVlelK~~iegI~k~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~   82 (119)
T cd01788          13 TIFTDAKESTTVYELKRIVEGILKRP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSS   82 (119)
T ss_pred             EEEeecCCcccHHHHHHHHHHHhcCC--hhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecC
Confidence            45578999999999999999999987  999999988889999999999999       7799999998864

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=7.7e-06  Score=95.19  Aligned_cols=72  Identities=22%  Similarity=0.285  Sum_probs=68.4

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .|.|||++.++.+|.|...+||.++|..|+.+.+|+  .+.|+|+|.|++|.|++++..|+| +|-||||+-|.+
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~--s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp   75 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIP--SEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP   75 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccc--cccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence            488999999999999999999999999999999998  999999999999999999999999 999999997743

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=97.88  E-value=3.9e-05  Score=65.88  Aligned_cols=71  Identities=18%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             ceeeeccc--eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC----C---EEc-CCCCcccccCCCCCCEEEEE
Q 007773          112 ITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD----G---EEL-EDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       112 I~Vkt~~G--k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~----G---k~L-eD~~tL~dy~I~~gsvI~L~  181 (590)
                      |+|.....  +.....++.+.||.+||++|...+|++  ++.|+|.+.    +   ..+ +|.++|..|++++|.+||+.
T Consensus         4 l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~   81 (87)
T PF14560_consen    4 LFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV   81 (87)
T ss_dssp             EEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred             EEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC--cccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence            44444333  478889999999999999999999998  999999986    1   223 67999999999999999986


Q ss_pred             eec
Q 007773          182 VRK  184 (590)
Q Consensus       182 vrk  184 (590)
                      -..
T Consensus        82 D~~   84 (87)
T PF14560_consen   82 DTN   84 (87)
T ss_dssp             E-T
T ss_pred             eCC
Confidence            543

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=97.85  E-value=6.6e-05  Score=67.86  Aligned_cols=74  Identities=30%  Similarity=0.417  Sum_probs=55.3

Q ss_pred             CEEEEE-EeCCe-EEEEEecCCCCHHHHHHHHHHhh-------CCCccceEEEEcCcccccCCccccccCccccc-----
Q 007773           33 SILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYN-------GFFVKKQKLVFEGRELARSNSRVRDYGLADGN-----   98 (590)
Q Consensus        33 sM~I~V-tl~G~-t~~l~V~~sdTV~~LK~kIq~~~-------Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gs-----   98 (590)
                      .+.|.+ ..+|. +.++.+++++||++||++|...-       -..+...||+|.|+.|+ |+.+|+++.+..+.     
T Consensus         2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~-d~~tL~~~~~~~~~~~~~~   80 (111)
T PF13881_consen    2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILE-DNKTLSDCRLPSGETPGGP   80 (111)
T ss_dssp             SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE--SSSBTGGGT--TTSETT--
T ss_pred             eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecC-CcCcHHHhCCCCCCCCCCC
Confidence            466777 56888 99999999999999999998751       12456789999999998 99999999887654     


Q ss_pred             -ceeEEeeec
Q 007773           99 -VLHLVLRLS  107 (590)
Q Consensus        99 -tL~LvlrLs  107 (590)
                       ++||+++..
T Consensus        81 ~vmHlvvrp~   90 (111)
T PF13881_consen   81 TVMHLVVRPN   90 (111)
T ss_dssp             EEEEEEE-SS
T ss_pred             EEEEEEecCC
Confidence             688888754

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.72  E-value=0.00015  Score=54.68  Aligned_cols=64  Identities=27%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      .+|....+.+.+..|++++|++|+.+.+.+  ++.+.|+++|..+++...+.++++.++++|++..
T Consensus         5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           5 NDGKTVELLVPSGTTVADLKEKLAKKLGLP--PEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHHHHCcC--hHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            367888899999999999999999999966  9999999999999999988899999999999853

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.63  E-value=8.9e-05  Score=63.18  Aligned_cols=73  Identities=19%  Similarity=0.275  Sum_probs=44.8

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc---Cccc-ccCCccccccCcccccceeEE
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---GREL-ARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~---Gk~L-~~D~~tL~dygI~~gstL~Lv  103 (590)
                      .++|.|.|.....+..+++++++|+.+||++|++..+++...|.|+.+   ...| ..++.+|+++||+.|+.|.|.
T Consensus         2 ~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    2 ASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             CccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            367999996566788899999999999999999999999999988643   2234 347899999999999998764

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=97.60  E-value=0.00021  Score=53.77  Aligned_cols=63  Identities=29%  Similarity=0.494  Sum_probs=57.3

Q ss_pred             CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           41 GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        41 ~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ++....+.+.++.|+.+||.+|..+.|+++..|.|+++|..+. +...+.+|++.+++++++..
T Consensus         6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILP-DSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEe
Confidence            5788889999999999999999999999999999999999997 67777899999999998764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=97.54  E-value=0.0002  Score=60.15  Aligned_cols=53  Identities=21%  Similarity=0.310  Sum_probs=46.4

Q ss_pred             ecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCCCCcccccCCCCCCEEEE
Q 007773          127 ERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       127 d~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      .++.||.+||+.|++..+.. +++.|+|.  +.|+.|.|..+|.+|++.++++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~-~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQL-TVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCC-CcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence            47789999999999987642 38999986  8999999999999999999999886

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.50  E-value=0.00013  Score=62.25  Aligned_cols=71  Identities=18%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC---CEEc--CCCCcccccCCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD---GEEL--EDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~---Gk~L--eD~~tL~dy~I~~gsvI~L~  181 (590)
                      +.|-|-||+.+| .+.+++++++|+.+||++|++..+++  .+.|.|+.+   ..+|  .+.++|++++++.|+.|+|.
T Consensus         3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS-----TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCC--CcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            456677887776 57889999999999999999999987  778888642   2345  57899999999999999873

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=97.46  E-value=0.00025  Score=59.57  Aligned_cols=52  Identities=25%  Similarity=0.363  Sum_probs=45.6

Q ss_pred             cCCCCHHHHHHHHHHhhC-CCccceEEE--EcCcccccCCccccccCcccccceeE
Q 007773           50 MESDSIASVKLRIQSYNG-FFVKKQKLV--FEGRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        50 ~~sdTV~~LK~kIq~~~G-ip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      .++.||.+||..|+...+ +++++|+|.  +.|+.|. |+.+|.+||+.+|++|++
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~-d~~tL~~~gv~~g~~lyv   74 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLK-DDDTLVDLGVGAGATLYV   74 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccC-CcccHhhcCCCCCCEEEE
Confidence            478999999999998875 579999986  7899997 888999999999998764

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.45  E-value=0.00043  Score=57.68  Aligned_cols=70  Identities=27%  Similarity=0.348  Sum_probs=57.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc---C-cccccCCccccccCcccccceeEEe
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE---G-RELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~---G-k~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ++++| .......++.|+|..+|..+|.+|....|++- .|+|.|.   | ++|.++..+|++|||-.+..|-|.-
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence            47888 55667899999999999999999999999985 9999996   2 3344489999999998776665543

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.001  Score=69.02  Aligned_cols=69  Identities=20%  Similarity=0.474  Sum_probs=59.9

Q ss_pred             EEEEEEeC--C--eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           34 ILIFLSVG--G--SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~Vtl~--G--~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      |.++|.++  |  ..++++|+.+.+|.+||+-++.+.|+|+++.+++|.|++|+ |+.+++.+.+..-+.+|++
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs-~~ttv~~cDL~qqs~~hi~   73 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELS-NDTTVQNCDLSQQSATHIM   73 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccc-cCceeecccccccchhhhh
Confidence            45566333  2  46888999999999999999999999999999999999998 8999999998888888876

>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.001  Score=69.08  Aligned_cols=66  Identities=14%  Similarity=0.227  Sum_probs=58.8

Q ss_pred             ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ...++++|+.+.+|.+||+.+++..|++  +++.+++|.|++|.|..++..+.+...+++|+++-+++
T Consensus        13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp--~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP~   78 (446)
T KOG0006|consen   13 SHGLPVEVDSDTSIFQLKEVVAKRQGVP--ADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRPW   78 (446)
T ss_pred             cCceeEEEecCCCHHHHHHHHHHhhCCC--hhheEEEEeccccccCceeecccccccchhhhhccCcc
Confidence            3568899999999999999999999998  99999999999999999999888888899998854443

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=96.95  E-value=0.0027  Score=53.05  Aligned_cols=70  Identities=19%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE---CC--EEcCCCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC---DG--EELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif---~G--k~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      ++|+|+...+..+.+.|++..+|..+|++|....++.   ..|+|.|   +|  ..|.++.+|++|||=.+..|.|+-
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~---g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCS---GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCcc---cceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence            3678888888889999999999999999999999975   6999999   23  347899999999987777776653

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.00084  Score=54.40  Aligned_cols=68  Identities=22%  Similarity=0.211  Sum_probs=58.3

Q ss_pred             EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        35 ~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      ++.+ ..=|+...+.+.++|||+++|..|+++.|..+++..|--.+..+. |.-+|++|.|++|..+.|.
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~k-d~I~L~dyeihdg~~lely   71 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFK-DHITLSDYEIHDGMNLELY   71 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhh-cccceeeEEeccCccEEEe
Confidence            3444 455789999999999999999999999999999888876677786 8999999999999887764

>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=96.26  E-value=0.024  Score=60.11  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=78.8

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHHhH
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEKDI  494 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d~  494 (590)
                      +---+|.=|++.=.|||.||||+..+  |+  ++-||=|++|-....    .++.+..+-.-++++.++.+-....+...
T Consensus       152 ~Agysv~tYiLgigDRHn~NILid~~--G~--l~HIDFG~il~~~p~----~~~~~E~~PFkLT~emv~~mGg~~~s~~f  223 (311)
T cd05167         152 MAAYSLISYLLQIKDRHNGNIMIDDD--GH--IIHIDFGFIFEISPG----GNLKFESAPFKLTKEMVQIMGGSMEATPF  223 (311)
T ss_pred             HHHHHHHHHHhhccccCccceEEcCC--CC--EEEEeeHHhhccCCC----CCCCcCCCCEeecHHHHHHhCCCCcchhH
Confidence            44566778888899999999999975  87  999999999965321    11111222223566666655444333333


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 007773          495 ELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVASI  574 (590)
Q Consensus       495 ~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~~  574 (590)
                      +.+++.    ..++..+||--.-++          --+-++|--..+..-+  +..+..-++.+.++.+|..-.+.+.++
T Consensus       224 ~~F~~~----~~~~~~~lR~~~~~i----------l~l~~lm~~s~lp~~~--~~~i~~l~~rf~l~~se~~a~~~~~~l  287 (311)
T cd05167         224 KWFVEL----CVRAFLAVRPYMDEI----------VSLVELMLDSGLPCFR--GDTIKNLRQRFAPEKSEREAAEFMLSL  287 (311)
T ss_pred             HHHHHH----HHHHHHHHHcCHHHH----------HHHHHHHHcCCchhhh--HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            333321    112222233221111          1122233221111111  333444555677888888888888888


Q ss_pred             HHHHhhhc
Q 007773          575 MDRHLDDL  582 (590)
Q Consensus       575 ~~~~~~~~  582 (590)
                      ++.-++..
T Consensus       288 I~~s~~~~  295 (311)
T cd05167         288 IAESYEKF  295 (311)
T ss_pred             HHHHHhch
Confidence            77776653

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=96.15  E-value=0.012  Score=51.52  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE-cCcccccCCccccccCcc
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-EGRELARSNSRVRDYGLA   95 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-~Gk~L~~D~~tL~dygI~   95 (590)
                      |-|.|.....++.++..++.||-+||.+++....-|++.|+|+. ...+|.+|..+|.|+|..
T Consensus         3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen    3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence            44555677789999999999999999999999999999999997 443444599999999753

>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT)

Probab=96.03  E-value=0.0018  Score=54.62  Aligned_cols=38  Identities=37%  Similarity=0.538  Sum_probs=28.5

Q ss_pred             hhhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEee
Q 007773          412 VDEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPI  450 (590)
Q Consensus       412 ~~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pI  450 (590)
                      +.++-++.+|+++|.|+|||.+||=+-.+ ++.++|.|+
T Consensus        40 ~~~l~~~~~fn~ligN~D~H~kN~s~l~~-~~~~~LaP~   77 (79)
T PF07804_consen   40 VRELFRRLVFNYLIGNTDRHLKNFSFLYD-GGGWRLAPA   77 (79)
T ss_dssp             HHHHHHHHHHHHHCTBS---CCCSEEEEE-CCEEEE--B
T ss_pred             HHHHHHHHHHHHHHcCCcCCcCCEEEEEc-CCeEEecCC
Confidence            56888999999999999999999877665 577899987

This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.

>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.96  E-value=0.0028  Score=51.44  Aligned_cols=68  Identities=15%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      .+.++..-|++..+.+.+++||+++|..|+...|-.  ++...|---+..++|+-+|+||.+++|-.+.|
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~--~~kivl~k~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--PEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCC--hhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence            455666679999999999999999999999999976  77777776677889999999999999887765

>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=95.76  E-value=0.087  Score=55.39  Aligned_cols=142  Identities=20%  Similarity=0.309  Sum_probs=77.6

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCC-CcccccccCcCCCCCCHHHHHHHHccChHHh
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFED-CTFDWLYWPQARQPYSPETINYINALDAEKD  493 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~-~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~d  493 (590)
                      +.-.+|.=|++.=.|||.||||+..+  |+  ++.||-|++|-..... ..|     ..+---++++.++.+-....+ .
T Consensus       131 lA~ySvv~YiLgigDRH~~NILid~~--G~--liHIDFG~ilg~~p~~~~~~-----E~~PFrLT~emv~~mGg~~s~-~  200 (289)
T cd00893         131 MAGYSLLCYLLQIKDRHNGNILLDSD--GH--IIHIDFGFILDSSPGNNLGF-----EPAAFKFTKEMVDFMGGKKSD-D  200 (289)
T ss_pred             HHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhhCcCCcCCCCC-----CCCCeeecHHHHHHhCCCCCh-h
Confidence            45567788899999999999999864  77  9999999999864322 111     112223366666555443322 1


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 007773          494 IELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVAS  573 (590)
Q Consensus       494 ~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~~  573 (590)
                      ...+++.    -.+.+.+||-..-.          .-.+-++|.-..+..-+  +..+..-++.+.++.+|+...+.+.+
T Consensus       201 f~~F~~~----c~~~~~~lR~~~~~----------il~ll~~m~~~~lp~~~--~~~i~~l~~r~~l~~s~~~a~~~~~~  264 (289)
T cd00893         201 FKKFRYL----CLRGFIAVRKHMDL----------VISLVYLLIFSGLPCFR--GSTIKKLKERLCLNMSEKEAINTVMK  264 (289)
T ss_pred             HHHHHHH----HHHHHHHHhhCHHH----------HHHHHHHHccCCCcccC--HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            2223221    12222222221111          11112222222211111  23445556667778888888888877


Q ss_pred             HHHHHhhhc
Q 007773          574 IMDRHLDDL  582 (590)
Q Consensus       574 ~~~~~~~~~  582 (590)
                      +++.-++..
T Consensus       265 lI~~s~~~~  273 (289)
T cd00893         265 KIDSSYNSI  273 (289)
T ss_pred             HHHHHHhhh
Confidence            777766643

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.

>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.71  E-value=0.085  Score=59.98  Aligned_cols=143  Identities=21%  Similarity=0.294  Sum_probs=98.0

Q ss_pred             hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChHH
Q 007773          413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAEK  492 (590)
Q Consensus       413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~~  492 (590)
                      ....--+|.=|+|+=.|||.||+|++++  |+  +..||-||.|--..+..+        ...-++.+.++++-.-....
T Consensus       684 kScaGYsVitYILGvGDRhldNLllT~d--Gk--~FHiDFgyIlGRDPKP~p--------p~MkL~kemve~mgg~es~~  751 (843)
T KOG0906|consen  684 KSCAGYSVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYILGRDPKPFP--------PPMKLAKEMVEGMGGAESKQ  751 (843)
T ss_pred             HhhccceeeeeeecccCCCcCceEEccC--Cc--EEEEeeeeeccCCCCCCC--------CccccCHHHHHHhcccchHH
Confidence            3455678999999999999999999998  87  999999999986655433        23445677777776554444


Q ss_pred             hHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCC-CCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773          493 DIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKT-LKDESVIEQIVREAQDAVLPGTSEDGFLESV  571 (590)
Q Consensus       493 d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~-~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~  571 (590)
                      -.+....+     -+....||.+..++       |+++.   +|.-.+ .+...+.+++|-++++-.--.+||++=...+
T Consensus       752 Yq~F~s~c-----~~Af~~LRRssnlI-------lnLf~---LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~f  816 (843)
T KOG0906|consen  752 YQEFRSYC-----YEAFLILRRSSNLI-------LNLFS---LMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHF  816 (843)
T ss_pred             HHHHHHHH-----HHHHHHHHHhccHH-------HHHHH---HHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHH
Confidence            44444332     23333444443332       23433   444443 3567888999999999888889999888777


Q ss_pred             HHHHHHHhhhc
Q 007773          572 ASIMDRHLDDL  582 (590)
Q Consensus       572 ~~~~~~~~~~~  582 (590)
                      ...++.-+..+
T Consensus       817 q~lI~~SV~AL  827 (843)
T KOG0906|consen  817 QKLINESVNAL  827 (843)
T ss_pred             HHHHHHHHHHH
Confidence            77777666544

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=95.56  E-value=0.024  Score=62.23  Aligned_cols=71  Identities=13%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             EEEEEeCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           35 LIFLSVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        35 ~I~Vtl~G~t~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      .|.|.-.|+.+.++ ++.++|+..+|.++...+|++|+.|++...|..+. |+..+...+|++|.+++++-..
T Consensus         5 ~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~-dd~~~~al~iKpn~~lmMmGt~   76 (473)
T KOG1872|consen    5 TVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAK-DDVDWGALQIKPNETLMMMGTA   76 (473)
T ss_pred             eEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccc-ccccccccccCCCCEEEeeccc
Confidence            45567788999998 99999999999999999999999999999999998 7778888999999999987643

>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function

Probab=95.51  E-value=0.031  Score=56.20  Aligned_cols=72  Identities=15%  Similarity=0.164  Sum_probs=45.0

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCC-CCcccccccCcCCCCCCHHHHHHHHccC
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFE-DCTFDWLYWPQARQPYSPETINYINALD  489 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~-~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld  489 (590)
                      ++-.++|||++|+|+|||.-|..=+. .+ ..-++-+|||-.|-.... .... -+..-|+ --|...|.+.++.|.
T Consensus        91 dliDm~IFDFLigN~DRhhye~f~~f-gn-~~~l~~LDNgrgFG~~~~de~sI-laPL~Qc-C~iRrST~~rL~~l~  163 (221)
T PF06702_consen   91 DLIDMAIFDFLIGNMDRHHYETFNKF-GN-EGFLLHLDNGRGFGRPSHDELSI-LAPLYQC-CRIRRSTWERLQLLS  163 (221)
T ss_pred             HHHHHHHHHHHhcCCcchhhhhhhcc-CC-CceEEEEeCCcccCCCCCCccch-hccHHHh-hhccccHHHHHHHhc
Confidence            56789999999999999999966332 22 234899999999953222 1220 0122222 335556666666555

Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.12  Score=45.61  Aligned_cols=75  Identities=12%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      +++.|+-.++.+..+.|.++.+...|+..-++..|+.  .+..+..|+|+.+...+|-.++..+++++|.++.....
T Consensus        21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~--~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~g   95 (99)
T KOG1769|consen   21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLS--MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTG   95 (99)
T ss_pred             EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCc--cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeeccc
Confidence            4555565677888999999999999999999999988  89999999999999999999999999999998765443

>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=95.02  E-value=0.18  Score=53.10  Aligned_cols=141  Identities=23%  Similarity=0.326  Sum_probs=76.2

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChHH
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAEK  492 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~~  492 (590)
                      +--.+|.=|++.=.|||.+|||+..+  |+  ++.||=|++|-.......|       -..||  +++.++.+-....+ 
T Consensus       133 ~A~ySvv~YvLGigDRH~~NILi~~~--G~--liHIDFG~~fg~~~~~~~~-------E~vPFrLT~~mv~~mGg~~s~-  200 (293)
T cd05168         133 LAGYSLICYLLQIKDRHNGNILIDND--GH--IIHIDFGFMLSNSPGNVGF-------ETAPFKLTQEYIEVMGGVNSD-  200 (293)
T ss_pred             HHHHHHHHHHhhccccCCCceEEcCC--CC--EEEEehHHhhcccccCCCC-------CCCCEEecHHHHHHhCCCCCc-
Confidence            45567788899999999999999874  77  9999999999754332222       22343  55555544433321 


Q ss_pred             hHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccC-CCCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773          493 DIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRK-TLKDESVIEQIVREAQDAVLPGTSEDGFLESV  571 (590)
Q Consensus       493 d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~-~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~  571 (590)
                      ....++.    +-.+.+.+||-..-.|          .-+-++|.-. .+..-+.-+..+..-++.+.+..+|..--+.+
T Consensus       201 ~~~~F~~----~c~~~~~~LR~~~~~i----------l~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~  266 (293)
T cd05168         201 LFNYFKK----LFLKGFMALRKHVDRI----------ILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFV  266 (293)
T ss_pred             hhHHHHH----HHHHHHHHHHhchHHH----------HHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHH
Confidence            1122222    1122233333322222          1222222221 11110101233444555567778888777777


Q ss_pred             HHHHHHHhhh
Q 007773          572 ASIMDRHLDD  581 (590)
Q Consensus       572 ~~~~~~~~~~  581 (590)
                      ..+++..++.
T Consensus       267 ~~lI~~s~~~  276 (293)
T cd05168         267 DELINQSLDN  276 (293)
T ss_pred             HHHHHHHHhc
Confidence            7777776654

PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII

>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=94.98  E-value=0.14  Score=55.40  Aligned_cols=144  Identities=20%  Similarity=0.248  Sum_probs=78.1

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE  491 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~  491 (590)
                      .+.-.+|+=|++.=.|||.||||+..+  |+  ++-||-|++|-..-+-..+    -| -..||  +++.++.+-..+.+
T Consensus       194 S~A~ysv~~YiLgigDRH~~NILi~~~--G~--~~HIDFG~ilg~~~~~~~~----~~-E~~PFrLT~~mv~~mGg~~s~  264 (352)
T cd00891         194 SCAGYCVATYVLGIGDRHNDNIMLTKT--GH--LFHIDFGHFLGNFKKKFGI----KR-ERAPFVLTPDMAYVMGGGDSE  264 (352)
T ss_pred             hHHHHHHHHHHccccccCCCceEECCC--CC--EEEEehHHhhccCCccCCC----CC-CCCCeeecHHHHHHhCCCCCc
Confidence            355577888999999999999999864  87  9999999999533211110    01 23455  67666665544422


Q ss_pred             HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773          492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESV  571 (590)
Q Consensus       492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~  571 (590)
                      .. ..++.    +-.+.+.+||-..-+|          ..+-++|.-..+..-+. +.-+...++...++.+|..-.+.+
T Consensus       265 ~~-~~F~~----~c~~~~~~LR~~~~~i----------l~l~~lm~~~~lp~~~~-~~~i~~l~~r~~l~~s~~~a~~~~  328 (352)
T cd00891         265 KF-QRFED----LCCKAYNILRKHGNLF----------INLFSLMLSAGIPELQS-IEDIEYLRDALALDKSDEEATEYF  328 (352)
T ss_pred             cc-chHHH----HHHHHHHHHhcCHHHH----------HHHHHhhccCCCCccCc-HHHHHHHHHHhCCCCCHHHHHHHH
Confidence            11 11111    0022222222222211          12222222221111111 123445556677888888888888


Q ss_pred             HHHHHHHhhhc
Q 007773          572 ASIMDRHLDDL  582 (590)
Q Consensus       572 ~~~~~~~~~~~  582 (590)
                      .++++.-++..
T Consensus       329 ~~lI~~s~~~~  339 (352)
T cd00891         329 RKLIHESLNSK  339 (352)
T ss_pred             HHHHHHHHhcc
Confidence            88887777654

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c

>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]

Probab=94.90  E-value=0.038  Score=48.38  Aligned_cols=51  Identities=16%  Similarity=0.115  Sum_probs=44.1

Q ss_pred             eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE-CC-EEcCCCCcccccCC
Q 007773          120 KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-DG-EELEDQRLITDICK  172 (590)
Q Consensus       120 k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif-~G-k~LeD~~tL~dy~I  172 (590)
                      .++.++.+.+.||.+||++++....-|  ++.|+|+. .. +.|+|.++|+|+|.
T Consensus        12 ttif~da~es~tV~elK~~l~gi~~~P--vn~qrL~kmd~eqlL~D~ktL~d~gf   64 (110)
T KOG4495|consen   12 TTIFTDAKESSTVFELKRKLEGILKRP--VNEQRLYKMDTEQLLDDGKTLGDCGF   64 (110)
T ss_pred             eeEEeecCccccHHHHHHHHHHHHhCC--CcchheeecCHHHHhhccchhhhccc
Confidence            356678999999999999999998877  99999997 44 67899999999964

>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=94.57  E-value=0.32  Score=52.50  Aligned_cols=146  Identities=17%  Similarity=0.166  Sum_probs=79.2

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccCh-HH
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDA-EK  492 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~-~~  492 (590)
                      ..---+|.=|++.=.|||.||||+.++  |+  ++-||=|+.|-..   .+|+++.+..+--+|++|.++.+..-+. ..
T Consensus       194 S~AgYsV~tYiLgIgDRHndNImi~~~--Gh--lfHIDFG~iLg~~---~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~  266 (354)
T cd00895         194 SCAGCCVATYVLGICDRHNDNIMLKTT--GH--MFHIDFGRFLGHA---QMFGNIKRDRAPFVFTSDMAYVINGGDKPSS  266 (354)
T ss_pred             HHHHHHHHHHHccccccCCCceeEcCC--CC--EEEEeeHHhcCCC---cccCCCCcCCCCccccHHHHHHhcCCCCCCh
Confidence            344567888999999999999999876  88  9999999999864   2344443333334457776655532221 22


Q ss_pred             hHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHHH
Q 007773          493 DIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESVA  572 (590)
Q Consensus       493 d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~~  572 (590)
                      ..+.+++.    --+....||-.       +..   .-.+-++|.-.++..-+. ++-+...++...++.||+.=.+.+.
T Consensus       267 ~f~~F~~l----c~~ay~~lRk~-------~~~---il~L~~lM~~sgiP~l~~-~~~i~~l~~rf~l~~se~eA~~~f~  331 (354)
T cd00895         267 RFHDFVDL----CCQAYNLIRKH-------THL---FLNLLGLMLSCGIPELSD-LEDLKYVYDALRPQDTEADATTYFT  331 (354)
T ss_pred             hHHHHHHH----HHHHHHHHHHh-------HHH---HHHHHHHHHcCCCcccCc-chHHHHHHHHhCCCCCHHHHHHHHH
Confidence            23333321    01111222222       111   112222332211111111 1234455666778888887666677


Q ss_pred             HHHHHHhhh
Q 007773          573 SIMDRHLDD  581 (590)
Q Consensus       573 ~~~~~~~~~  581 (590)
                      ++++.-++.
T Consensus       332 ~lI~~s~~s  340 (354)
T cd00895         332 RLIESSLGS  340 (354)
T ss_pred             HHHHHHHhh
Confidence            777666553

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not

>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.071  Score=58.62  Aligned_cols=72  Identities=13%  Similarity=0.126  Sum_probs=63.5

Q ss_pred             ceeeeccceeeEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          112 ITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      |.|| ..|+.+.++ ++.++|+..+|+++....|++  |+.|++.+.|..+.|+-.+....|+++.+|+|+-...+
T Consensus         6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~   78 (473)
T KOG1872|consen    6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVP--PERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA   78 (473)
T ss_pred             Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCC--ccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence            4455 467889888 999999999999999999988  99999999999999998888889999999999865443

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=94.34  E-value=0.14  Score=42.06  Aligned_cols=62  Identities=16%  Similarity=0.041  Sum_probs=46.2

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      .+++.+++.|.++.++.++-+..++++++.  +++..|.|+++.|+-...+.-.|+.+|+.+.|
T Consensus         4 ~~~rr~~vkvtp~~~l~~VL~eac~k~~l~--~~~~~L~h~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    4 YNFRRFKVKVTPNTTLNQVLEEACKKFGLD--PSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             TTS-EEEE---TTSBHHHHHHHHHHHTT----GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred             cCCcEEEEEECCCCCHHHHHHHHHHHcCCC--ccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence            568899999999999999999999999988  88999999999999999999889999998875

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=94.24  E-value=0.34  Score=52.33  Aligned_cols=140  Identities=23%  Similarity=0.335  Sum_probs=78.6

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE  491 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~  491 (590)
                      .+.-.+|.=|++.=.|||.||||+..+  |+  ++.||=|++|-....  +|     |   .||  +++.++.+-....+
T Consensus       193 S~A~ysvv~YiLGigDRH~~NILi~~~--G~--~~HIDFG~ilg~~p~--~~-----~---~PFrLT~~mv~~mGg~~s~  258 (350)
T cd00896         193 SCAGYCVITYILGVGDRHLDNLLLTKD--GK--LFHIDFGYILGRDPK--PF-----P---PPMKLCKEMVEAMGGAQSE  258 (350)
T ss_pred             HHHHHHHHHHHhcccccCCCcEEEcCC--CC--EEEEEhHHhhCCCCC--CC-----C---CCeeccHHHHHHhCCCCCc
Confidence            355567888999999999999999854  87  999999999964322  11     1   443  55555444322211


Q ss_pred             HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCC-CCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773          492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLK-DESVIEQIVREAQDAVLPGTSEDGFLES  570 (590)
Q Consensus       492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~-~~s~le~~~~~a~~~~~~~~~~~~f~~~  570 (590)
                       ..+.++.    +-...+.+||-..-++       +++   -++|.-..+. ..+.-+..+..-++...++.+|..-.+.
T Consensus       259 -~~~~F~~----~c~~~~~~lR~~~~~i-------l~l---~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~  323 (350)
T cd00896         259 -GYQEFKS----YCCEAYNILRKSANLI-------LNL---FSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAIKH  323 (350)
T ss_pred             -chHHHHH----HHHHHHHHHHhCHHHH-------HHH---HHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence             1122222    1122233333222221       112   2222222111 1122355666777777888888887888


Q ss_pred             HHHHHHHHhhhc
Q 007773          571 VASIMDRHLDDL  582 (590)
Q Consensus       571 ~~~~~~~~~~~~  582 (590)
                      +.++++.-++.+
T Consensus       324 ~~~lI~~s~~~~  335 (350)
T cd00896         324 FQNLINDSVNAL  335 (350)
T ss_pred             HHHHHHHHHhhh
Confidence            888877776654

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=94.12  E-value=0.16  Score=48.95  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=56.3

Q ss_pred             EEEEE-EeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCccce-EEEEc-Ccccc-cCCccccccCcccc----ccee
Q 007773           34 ILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQ-KLVFE-GRELA-RSNSRVRDYGLADG----NVLH  101 (590)
Q Consensus        34 M~I~V-tl~G----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~Q-rLvf~-Gk~L~-~D~~tL~dygI~~g----stL~  101 (590)
                      |+|+| +++|    .++.+.+.++.||.+|+..|....+++...| .|++. ++.|. .++..+..+.-.+.    -+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~   80 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR   80 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence            68899 8899    6899999999999999999999999998875 45553 55552 24555665554333    3677


Q ss_pred             EEeeeccc
Q 007773          102 LVLRLSDL  109 (590)
Q Consensus       102 LvlrLsd~  109 (590)
                      |.+++.|+
T Consensus        81 l~~rl~GG   88 (162)
T PF13019_consen   81 LSLRLRGG   88 (162)
T ss_pred             EEEeccCC
Confidence            77777654

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=93.95  E-value=0.12  Score=43.51  Aligned_cols=72  Identities=17%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCC-CCC---cEEEE-ECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFV-DLK---NQELI-CDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~-~~~---~Q~Li-f~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      .+|+|...+|+.+-+.+..+.+|..+...|.+..+.+. +..   .-+|. -+|..|.++++|++++|.+|+++.|.
T Consensus         3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen    3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred             EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence            35666655568899999999999999999999888531 122   24566 68999999999999999999999873

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=93.66  E-value=0.19  Score=41.31  Aligned_cols=63  Identities=14%  Similarity=0.075  Sum_probs=45.9

Q ss_pred             EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeE
Q 007773           39 SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        39 tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      ..+++...+.|.|+.++.+|-+..-+++|+.+++-.|.++++.|. -+.+++-.|+.+|+.+.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ld-lslp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLD-LSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEES-SS-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEec-cccceeecCCCCCCEEeC
Confidence            567899999999999999999999999999999889999999996 889999999999988764

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]

Probab=93.57  E-value=0.47  Score=42.03  Aligned_cols=77  Identities=14%  Similarity=0.316  Sum_probs=67.7

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .-+.+.| -.++.+..+.|..+.....|+..-.+..|++....+++|+|+.+. ...|-.+.+..+|+.|.++....++
T Consensus        19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~-~~~TP~~L~mEd~D~Iev~~~q~gG   96 (99)
T KOG1769|consen   19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIR-ETHTPADLEMEDGDEIEVVQEQTGG   96 (99)
T ss_pred             ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcC-CCCChhhhCCcCCcEEEEEeecccC
Confidence            4566666 466788899999999999999999999999999999999999997 8899999999999999988765544

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.41  E-value=0.098  Score=52.03  Aligned_cols=66  Identities=14%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             EEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccccccee
Q 007773           35 LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH  101 (590)
Q Consensus        35 ~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~  101 (590)
                      +..++.+++.+.+.+...||+.++|.+++++.|+.+..|+++|+|..|- |...|..++|+.|....
T Consensus       149 k~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~-dkt~LeEc~iekg~rYv  214 (231)
T KOG0013|consen  149 KLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLV-DKTDLEECKIEKGQRYV  214 (231)
T ss_pred             HHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCcee-ccccceeeeecCCCEEE
Confidence            3333556778889999999999999999999999999999999999998 89999999999995443

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=93.32  E-value=0.15  Score=45.08  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=39.3

Q ss_pred             eeEEEee--cCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCccccc
Q 007773          121 VFEFHVE--RGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI  170 (590)
Q Consensus       121 ~~~i~Vd--~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy  170 (590)
                      .+.+++.  .+.||..||++|.+...-...-..++|+|+|+.|.|...++..
T Consensus        13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~   64 (97)
T PF10302_consen   13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE   64 (97)
T ss_pred             CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence            3666666  7889999999999998423235688999999999998777653

They contain a characteristic GFDRL sequence motif.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=93.30  E-value=0.22  Score=42.03  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=47.3

Q ss_pred             EEEEEEeC-CeEEEEEecCCCCHHHHHHHHHHhhCCCccc------eEEE-EcCcccccCCccccccCcccccceeE
Q 007773           34 ILIFLSVG-GSVIPMRVMESDSIASVKLRIQSYNGFFVKK------QKLV-FEGRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        34 M~I~Vtl~-G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~------QrLv-f~Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      ++|+|... |+.+.+.+..+.+|+.|...|-+..+.+...      -.|. -+|..|. ++.+|+++||.+|+++.|
T Consensus         3 ~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-~~~tL~~~gV~dGd~L~L   78 (79)
T PF08817_consen    3 CRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-PDQTLADAGVRDGDVLVL   78 (79)
T ss_dssp             EEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-TTSBCGGGT--TT-EEEE
T ss_pred             EEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-CcCcHhHcCCCCCCEEEe
Confidence            45666444 5899999999999999999999987764322      2344 4588897 899999999999999976

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=93.26  E-value=0.49  Score=51.26  Aligned_cols=143  Identities=22%  Similarity=0.295  Sum_probs=75.8

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCC--CCHHHHHHHHc--cCh
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQP--YSPETINYINA--LDA  490 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~P--fs~~~~~~i~~--Ld~  490 (590)
                      .--.+|.=|++.=.|||.||||+..+  |+  ++-||-|++|-..-.  .|.  ..| ...|  ++++.++.+..  ...
T Consensus       200 ~AgysVvtYiLGIGDRHn~NILi~~~--G~--l~HIDFG~ilg~~~~--~~~--~~~-E~vPFkLT~e~v~vmg~G~~~~  270 (361)
T cd05174         200 CAGYCVATYVLGIGDRHSDNIMIRES--GQ--LFHIDFGHFLGNFKT--KFG--INR-ERVPFILTYDFVHVIQQGKTNN  270 (361)
T ss_pred             HHHHHHHHHHhcccCcCccceeEcCC--CC--EEEEehHHhhcCCcc--cCC--CCC-CCCCeeccHHHHHHHccCCCCC
Confidence            44567788889999999999999764  87  999999999964211  010  001 1234  45555444421  111


Q ss_pred             HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773          491 EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLES  570 (590)
Q Consensus       491 ~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~  570 (590)
                      +.....++.    +-..+..+||-..-++       +++.+   ||.-..+..-.. +.-++.-++...++.||+.-.+.
T Consensus       271 s~~f~~F~~----~c~~a~~~LRk~~~~i-------l~l~~---lM~~sgip~~~~-~~~i~~l~~~~~l~~se~ea~~~  335 (361)
T cd05174         271 SEKFERFRG----YCEQAYKILRRHGTLF-------LHLFA---LMKAAGLPELNC-SKDIQYLKDSLALGKTEEEALKH  335 (361)
T ss_pred             CchhhHHHH----HHHHHHHHHHhhHHHH-------HHHHH---HHhcCCCCccCc-hhHHHHHHHHhCCCCCHHHHHHH
Confidence            222223332    1123333333322221       22222   232111111000 23455666677888898887777


Q ss_pred             HHHHHHHHhhh
Q 007773          571 VASIMDRHLDD  581 (590)
Q Consensus       571 ~~~~~~~~~~~  581 (590)
                      +...+++-+.+
T Consensus       336 f~~~i~~s~~~  346 (361)
T cd05174         336 FRVKFNEALRE  346 (361)
T ss_pred             HHHHHHHHHhh
Confidence            77777776654

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]

Probab=92.93  E-value=0.2  Score=49.83  Aligned_cols=71  Identities=18%  Similarity=0.307  Sum_probs=55.8

Q ss_pred             EEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE-EcC-----cccccCCccccccCcccccceeEEe
Q 007773           34 ILIFLSV--GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-FEG-----RELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        34 M~I~Vtl--~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f~G-----k~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ++++|+.  +.-...-+..++.||+++|.|++...|.++..+.|. |.|     ..|++++..|..|+..+|-.||++=
T Consensus         2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD   80 (234)
T KOG3206|consen    2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID   80 (234)
T ss_pred             eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence            4566633  322345567789999999999999999999999987 444     3488788999999999999888754

>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=92.71  E-value=0.72  Score=49.91  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=35.0

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY  458 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~  458 (590)
                      ...-.+|.=|++.=-|||.||||+.++  |+  ++-||-|++|-.
T Consensus       193 S~A~ysvv~YiLgigDRH~~NILl~~~--G~--l~HIDFG~~lg~  233 (353)
T cd05166         193 SCAGCCVATYVLGICDRHNDNIMLTKS--GH--MFHIDFGKFLGH  233 (353)
T ss_pred             HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEeeHHhccc
Confidence            345577888999999999999999864  87  999999999974

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=92.71  E-value=0.48  Score=39.79  Aligned_cols=72  Identities=22%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccc-eEEE--EcCcccccCC-ccccccCcccccceeE
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKK-QKLV--FEGRELARSN-SRVRDYGLADGNVLHL  102 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~-QrLv--f~Gk~L~~D~-~tL~dygI~~gstL~L  102 (590)
                      .+...|.| ..+|+.+.-...+++||.+|..-|......+... -.|+  |-.+.+..++ .+|++.|+..+.+|++
T Consensus         4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            45678888 6688999999999999999999999887776654 5565  5577787555 7999999999998876

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=92.58  E-value=0.93  Score=49.09  Aligned_cols=42  Identities=29%  Similarity=0.442  Sum_probs=35.5

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS  459 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~  459 (590)
                      .+--.+|.=|++.=.|||.||||+..+  |+  ++-||-|++|-..
T Consensus       194 S~AgysvvtYiLGigDRHn~NILi~~~--G~--~~HIDFG~ilg~~  235 (354)
T cd05177         194 SCAGWCVVTFILGVCDRHNDNIMLTHS--GH--MFHIDFGKFLGHA  235 (354)
T ss_pred             HHHHHHHHHHHhcccCcCCCceeEcCC--CC--EEEEehHHhcCCC
Confidence            345567888999999999999999864  87  9999999999754

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=91.96  E-value=0.8  Score=38.45  Aligned_cols=69  Identities=14%  Similarity=0.103  Sum_probs=54.7

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCc-EEEE--ECCEEcCCC--CcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELI--CDGEELEDQ--RLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~-Q~Li--f~Gk~LeD~--~tL~dy~I~~gsvI~L  180 (590)
                      .+|.||..+|+.+.-....++||.+|.+-|......+  ... ..|+  |-.+.+.+.  .+|.+.++...++|++
T Consensus         7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~--~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v   80 (82)
T PF00789_consen    7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSP--EESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV   80 (82)
T ss_dssp             EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCT--TTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCC--CCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence            4566677778888888889999999999998887655  333 6675  677888654  5999999999999886

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=91.95  E-value=0.77  Score=49.83  Aligned_cols=41  Identities=39%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCC
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPY  458 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~  458 (590)
                      ..--.+|.=|++.=.|||.||||+..+  |+  ++-||=|++|-.
T Consensus       199 S~AgYsvvtYILGIGDRHn~NILi~~~--G~--l~HIDFG~ilg~  239 (362)
T cd05173         199 SCAGYCVATYVLGIGDRHSDNIMVRKN--GQ--LFHIDFGHILGN  239 (362)
T ss_pred             HHHHHHHHHHHhhccccCCCceEECCC--CC--EEEEehHHhhcc
Confidence            344566788889999999999999764  87  999999999964

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de

>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=91.76  E-value=1.2  Score=48.23  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=35.7

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS  459 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~  459 (590)
                      .+---+|.=|++.=.|||.||||+..+  |+  ++-||=|++|-..
T Consensus       193 S~AgYsv~tYiLGIgDRHn~NILi~~~--Gh--l~HIDFG~ilg~~  234 (353)
T cd05176         193 SCAGCCVATYVLGICDRHNDNIMLRST--GH--MFHIDFGKFLGHA  234 (353)
T ss_pred             HHHHHHHHhhhccccCcCCcceEEcCC--CC--EEEEeeHHhcCCC
Confidence            355577888999999999999999765  87  9999999999753

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=90.93  E-value=0.92  Score=43.79  Aligned_cols=72  Identities=11%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             ccceeeeccc----eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCc-EEEEE-CCEEc--CCCCcccccCCCCC----CE
Q 007773          110 QAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKN-QELIC-DGEEL--EDQRLITDICKRNE----AV  177 (590)
Q Consensus       110 m~I~Vkt~~G----k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~-Q~Lif-~Gk~L--eD~~tL~dy~I~~g----sv  177 (590)
                      |+|+|++++|    .++.+.+..+.||.+|+.+|....+++  ... +.|++ .++.|  .+...++.+.-.++    .+
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~   78 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFIT   78 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCC--ccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceE
Confidence            5789999999    588899999999999999999999977  555 45665 35555  45555666553333    34


Q ss_pred             EEEEee
Q 007773          178 IHLLVR  183 (590)
Q Consensus       178 I~L~vr  183 (590)
                      ++|.++
T Consensus        79 l~l~~r   84 (162)
T PF13019_consen   79 LRLSLR   84 (162)
T ss_pred             EEEEEe
Confidence            555555

>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=90.83  E-value=1.3  Score=48.05  Aligned_cols=140  Identities=21%  Similarity=0.254  Sum_probs=77.9

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccCh--
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDA--  490 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~--  490 (590)
                      .---+|.=|++.=.|||.||||+..+  |+  ++.||-|++|-..   .+|  .-+-.-..||  +++.++.+-....  
T Consensus       204 ~AgYsV~tYiLGIgDRHndNImi~~~--G~--lfHIDFG~ilg~~---~~~--~gi~~E~~PFkLT~e~v~vmg~~gg~~  274 (365)
T cd00894         204 CAGYCVATFVLGIGDRHNDNIMITET--GN--LFHIDFGHILGNY---KSF--LGINKERVPFVLTPDFLFVMGTSGKKT  274 (365)
T ss_pred             hHHHHHHHHhccccCccccceeEcCC--CC--EEEEeeHHhhCCC---Ccc--CCCCCCCCCeeecHHHHHHhCccCCcC
Confidence            44456777899999999999999865  87  9999999999642   111  1111234454  5555544432211  


Q ss_pred             HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCC---CCCCchHHHHHHHHHHhcCCCCChhhH
Q 007773          491 EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKT---LKDESVIEQIVREAQDAVLPGTSEDGF  567 (590)
Q Consensus       491 ~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~---~~~~s~le~~~~~a~~~~~~~~~~~~f  567 (590)
                      ......+++    +-.++...||-..-+          .--+-+||.-.+   +.....    +..-++...++.||+.=
T Consensus       275 s~~f~~F~~----~c~~a~~~LRk~~~l----------il~L~~lM~~sgip~l~~~~~----i~~l~~~~~l~~se~eA  336 (365)
T cd00894         275 SLHFQKFQD----VCVKAYLALRHHTNL----------LIILFSMMLMTGMPQLTSKED----IEYIRDALTVGKSEEDA  336 (365)
T ss_pred             ChhHHHHHH----HHHHHHHHHHhhHHH----------HHHHHHHHhcCCCcccCcchH----HHHHHHHhCCCCCHHHH
Confidence            122233332    112333333333222          122233443322   222233    44556667788888877


Q ss_pred             HHHHHHHHHHHhhh
Q 007773          568 LESVASIMDRHLDD  581 (590)
Q Consensus       568 ~~~~~~~~~~~~~~  581 (590)
                      .+.+.+++..-++.
T Consensus       337 ~~~f~~~I~~s~~~  350 (365)
T cd00894         337 KKHFLDQIEVCRDK  350 (365)
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777776654

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=90.59  E-value=0.56  Score=41.56  Aligned_cols=47  Identities=17%  Similarity=0.319  Sum_probs=37.0

Q ss_pred             EEEEec--CCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCcccccc
Q 007773           45 IPMRVM--ESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDY   92 (590)
Q Consensus        45 ~~l~V~--~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dy   92 (590)
                      .+++|.  .+.||..||..|.+..+  ..-..++|+|+|+.|. |+..|..-
T Consensus        14 l~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~-d~t~l~~~   64 (97)
T PF10302_consen   14 LPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLN-DHTDLSSE   64 (97)
T ss_pred             ceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccC-ccchhhhh
Confidence            556666  78999999999999973  4556679999999998 66665543

They contain a characteristic GFDRL sequence motif.

>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=90.47  E-value=1.3  Score=48.13  Aligned_cols=144  Identities=23%  Similarity=0.286  Sum_probs=76.2

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccCh-
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDA-  490 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~-  490 (590)
                      ..--.+|.=|++.=.|||.||||+..+  |+  ++.||-|++|-..-+  +|.   +---..||  +++.++.+..... 
T Consensus       203 S~AgysvvtYiLGigDRH~~NILi~~~--G~--l~HIDFG~ilg~~~~--~~~---i~~E~~PFkLT~emv~~mg~~~~~  273 (366)
T cd05165         203 SCAGYCVATFVLGIGDRHNDNIMVKET--GQ--LFHIDFGHILGNYKS--KFG---INRERVPFVLTPDFVHVIGRGKKD  273 (366)
T ss_pred             HHHHHHHHHHHhhccccCCcceEEcCC--CC--EEEEehHHhhccCCc--cCC---CCCCCCCeeecHHHHHHhcccCCc
Confidence            345567888999999999999999864  87  999999999943211  110   00123444  4444443332111 


Q ss_pred             --HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHH
Q 007773          491 --EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFL  568 (590)
Q Consensus       491 --~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~  568 (590)
                        ......++.    +-...+.+||-..-++       +++   -+||.-.++..-+. +.-+..-++....+.||+.-.
T Consensus       274 ~~s~~f~~F~~----~c~~a~~~LR~~~~~i-------l~l---~~lM~~s~ip~~~~-~~~i~~lr~rf~l~~se~eA~  338 (366)
T cd05165         274 NTSEHFQRFQD----LCEKAYLALRRHGNLL-------IIL---FSMMLMSGLPELTS-KEDIEYLRDTLALGKSEEEAL  338 (366)
T ss_pred             CCChhhhHHHH----HHHHHHHHHHhCHHHH-------HHH---HHHHhcCCCcccCc-hhHHHHHHHHhCCCCCHHHHH
Confidence              112223332    1133333343332222       112   22332221111010 233555566677788888777


Q ss_pred             HHHHHHHHHHhhh
Q 007773          569 ESVASIMDRHLDD  581 (590)
Q Consensus       569 ~~~~~~~~~~~~~  581 (590)
                      +.+..++..-++.
T Consensus       339 ~~f~~~I~~s~~~  351 (366)
T cd05165         339 KYFLDKFNEALDG  351 (366)
T ss_pred             HHHHHHHHHHHhc
Confidence            7777777777663

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=90.32  E-value=1.4  Score=37.14  Aligned_cols=71  Identities=18%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccccC--CccccccCcccccceeE
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL  102 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstL~L  102 (590)
                      ...+|.| ..+|+.+.-....++||.+|..-|....+.....-.|+  |-.+.+.++  +.+|.+.|+..+.++.+
T Consensus         3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            4567888 56889999999999999999999976666655556665  557777643  47999999988877754

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=89.90  E-value=1.5  Score=37.20  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=53.0

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCC-ccceEEE--EcCcccccCCccccccCcccccce
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF-VKKQKLV--FEGRELARSNSRVRDYGLADGNVL  100 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip-~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL  100 (590)
                      ..+|.| ..+|+.+.-++..++||.+|..-|....+-+ .....|.  |-.+.|.+++.||++.|+.+..++
T Consensus         4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~   75 (79)
T cd01770           4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV   75 (79)
T ss_pred             eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence            457788 5688999999999999999999999875432 2334565  668889877899999999865443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes

Probab=89.68  E-value=0.3  Score=50.96  Aligned_cols=139  Identities=23%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             ccCCC--CCcEEEEEeCCC-CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCccc
Q 007773          274 PSSEG--SGGAYFMQDSSG-QKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYS  350 (590)
Q Consensus       274 ~~~~G--s~Gsyf~~~~~g-~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~  350 (590)
                      ++..|  |||+||+...+| ....+|.|+..-                             -..|+=||+|-.       
T Consensus        32 ~s~~g~ns~gv~fv~~f~~~~~~avViK~s~t-----------------------------~~~E~~~s~La~-------   75 (275)
T PF09192_consen   32 HSEHGVNSGGVFFVATFSGSKEEAVVIKFSST-----------------------------IQQEVFASELAR-------   75 (275)
T ss_dssp             EEEE-STTS-EEEEEETTE----EEEEE--TT-----------------------------HHHHHHHHHHHH-------
T ss_pred             hhccccCCCCEEEEEEcCCCceEEEEEecCCc-----------------------------hHHHHHHHHHHH-------
Confidence            34455  999999996654 235889997633                             478999999974       


Q ss_pred             ccccccCCCCCCceEEEEecccCccCC-----------CCCC---CCCCCccceEEeecccccCCcccCCCC-CCC----
Q 007773          351 LHDEERGFAGVPPTVMVRCLHKGFNHP-----------NGYK---HDLENVKIGSLQMFVENVGSCEEMGPR-AFP----  411 (590)
Q Consensus       351 ~~~~~~gf~~VP~T~lv~~~~~~f~~~-----------~~~~---~~~~~~k~GSlQ~fv~~~~~~~~~~~~-~f~----  411 (590)
                          .||. -+|--.+++.+.+-|.--           +.-.   ...+..-.=-+++||++. ...++... .|.    
T Consensus        76 ----~Lgv-~~P~~Rii~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~-~L~e~~~~~~f~~~~~  149 (275)
T PF09192_consen   76 ----WLGV-PTPQMRIIESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGK-PLNELNHKEYFSPEKS  149 (275)
T ss_dssp             ----HCT------EEEEESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EE-ESTT--SS--SHHHHS
T ss_pred             ----HhCC-CCCceeeeecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCC-CccccCcccccCCcch
Confidence                5674 566667776544322100           0000   000111112456777752 23333322 232    


Q ss_pred             ----hhhhhheeeeeeeeecCCCCC------------CcEEEeccCCCceEEEeeccCCc
Q 007773          412 ----VDEVHKISVLDIRLANTDRHA------------GNILVSKDEGGQIKLVPIDHGYC  455 (590)
Q Consensus       412 ----~~ev~ki~ilD~~i~N~DR~~------------gNiLv~~~~~g~~~l~pIDhGl~  455 (590)
                          ..++-||.+||+.++|.||-.            .|||+....+| ..+..||..++
T Consensus       150 ~~~~~~~LG~ii~fDi~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~~-~~~~~i~~~i~  208 (275)
T PF09192_consen  150 GEKRLEQLGRIIAFDIFINNFDRLPCRILNWRNEGNPSNILFYEKPNG-WYFSLIDSNIT  208 (275)
T ss_dssp             -HHHHHHHHHHHHHHHHHT--SSS----SSS-S---GGGEEEESB--T-T-EEE-S----
T ss_pred             HHHHHHHHHhHHhhhhhhcCcccCcccccccCCCCChhheEEeccccc-ceeeecccccc
Confidence                246889999999999999966            56888765333 35788888775

It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.

>KOG0013 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.55  E-value=0.73  Score=46.03  Aligned_cols=62  Identities=15%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      .+++.+.+.+...+||.++|.++..+.++.  +-.|+++|+|..|-|...|..+.+++|+--.+
T Consensus       154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D--~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl  215 (231)
T KOG0013|consen  154 TTREDFWLTAPHYDTVGEIKRALRAAEGVD--PLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL  215 (231)
T ss_pred             hhhhheeecccCcCcHHHHHHHHHHhhccc--hhhheeeccCCceeccccceeeeecCCCEEEE
Confidence            367889999999999999999999999977  88999999999999999999999999954443

>COG5417 Uncharacterized small protein [Function unknown]

Probab=89.43  E-value=1.7  Score=36.70  Aligned_cols=69  Identities=17%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             CEEEEE---EeCCeEEEEEecCCCCHHHHHHHHHHhhCCC-----ccceEEEEcCcccccCCccccccCcccccceeE
Q 007773           33 SILIFL---SVGGSVIPMRVMESDSIASVKLRIQSYNGFF-----VKKQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        33 sM~I~V---tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip-----~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      .|.|+|   .-+|.++.++++...+|..+-..+-+...+.     -.+.+..-.++.|. ++..|.+|+|.+|+.+.+
T Consensus         4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~lls-gd~kL~d~~IadGD~Lei   80 (81)
T COG5417           4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLS-GDDKLIDYQIADGDILEI   80 (81)
T ss_pred             eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEec-CCceEEeccccCCCEEEe
Confidence            356666   2478999999999999999988777665543     23446777899998 888999999999998754

>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A

Probab=88.25  E-value=3.8  Score=41.15  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=59.4

Q ss_pred             CCEEEEEEeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCcc---ceEEE--EcCcc---cccCCccccccCcccccc
Q 007773           32 DSILIFLSVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVK---KQKLV--FEGRE---LARSNSRVRDYGLADGNV   99 (590)
Q Consensus        32 ~sM~I~Vtl~G----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~---~QrLv--f~Gk~---L~~D~~tL~dygI~~gst   99 (590)
                      ..|+++...++    +.+.+.|..+.||.+|..+++.+.+++..   +.+|+  ++++.   +. .+..|...  .+...
T Consensus        19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~-~d~~i~~l--~~~~~   95 (213)
T PF14533_consen   19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILS-EDEPISSL--NDYIT   95 (213)
T ss_dssp             --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE--TTSBGGGS----TTE
T ss_pred             eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecC-CCCchhhc--cCcce
Confidence            34666663222    35888899999999999999999998765   33443  45554   54 55666655  22222


Q ss_pred             eeEEeeec----------ccccceeee-------ccceeeEEEeecCCcHHHHHHHHHHhcCCC
Q 007773          100 LHLVLRLS----------DLQAITVTT-------VCGKVFEFHVERGRNVGYVKQQIAKKGREF  146 (590)
Q Consensus       100 L~LvlrLs----------d~m~I~Vkt-------~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~  146 (590)
                      +.+-.-..          +.+.|.|-.       .-|-.|.+.|.++.|..++|+||+++.|++
T Consensus        96 ~r~E~ip~ee~~~~~~~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~  159 (213)
T PF14533_consen   96 LRIEEIPEEELNLDDESEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVS  159 (213)
T ss_dssp             EEEEE--GGGSS--TT--TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---
T ss_pred             eeeecCChHHhhcccccccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCC
Confidence            22211111          112233321       347788899999999999999999999976

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=88.21  E-value=1.9  Score=36.29  Aligned_cols=69  Identities=6%  Similarity=0.000  Sum_probs=51.6

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD---~~tL~dy~I~~gsvI~L  180 (590)
                      -+|.||..+|+.+.-....++|+.+|.+-|....+..  .....|+  |-.+.+.+   +.+|.+.++...++|.+
T Consensus         5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~--~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v   78 (80)
T smart00166        5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDG--NDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL   78 (80)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCC--CCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence            4566777778878878889999999999996655543  4456665  66777754   47899999888888775

Present in FAF1 and Shp1p.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=87.77  E-value=2.1  Score=36.37  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH  179 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD-~~tL~dy~I~~gsvI~  179 (590)
                      -+|.||..+|+.+.-....++||++|.+-|....+.. ......|.  |-.+.|.| +.||.|.++.+..++.
T Consensus         5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~-~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~q   76 (79)
T cd01770           5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF-AARPFTLMTAFPVKELSDESLTLKEANLLNAVIVQ   76 (79)
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC-CCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEEE
Confidence            3577788888888888889999999999998875432 13455665  66787754 8899999988655443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain

Probab=87.69  E-value=0.53  Score=48.03  Aligned_cols=61  Identities=26%  Similarity=0.291  Sum_probs=38.8

Q ss_pred             EEeecccccCCcccCCCCC---CC---hhhhhheeeeeeeeecCCC----------CCCcEEEecc--CCCceEEEeecc
Q 007773          391 SLQMFVENVGSCEEMGPRA---FP---VDEVHKISVLDIRLANTDR----------HAGNILVSKD--EGGQIKLVPIDH  452 (590)
Q Consensus       391 SlQ~fv~~~~~~~~~~~~~---f~---~~ev~ki~ilD~~i~N~DR----------~~gNiLv~~~--~~g~~~l~pIDh  452 (590)
                      -+++||++..-.+......   ..   ..++-||-+||+.++|.||          |.+|||++..  .+|. .+-+||-
T Consensus        94 limeYv~G~~l~~~~~~~~s~~~~~~~~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~~~~~~-~~~~~d~  172 (238)
T cd05124          94 LIMEYVPGITLFKMTTHRASEYKGEERLIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIPNKNGA-TEDLIDS  172 (238)
T ss_pred             eeeeecCCccchhhccccccchhhHHHHHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcccCcCCC-ceeeccc
Confidence            4678888755433322211   11   2468899999999999998          6678998764  1222 3555654

The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac

>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases

Probab=87.42  E-value=4.4  Score=44.08  Aligned_cols=42  Identities=38%  Similarity=0.474  Sum_probs=35.1

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS  459 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~  459 (590)
                      .+---+|.=|++.=.|||.||||+..+  |+  ++.||=|++|-..
T Consensus       202 S~AgYsV~tYiLGIgDRHndNImi~~~--G~--l~HIDFG~iLg~~  243 (366)
T cd05175         202 SCAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFLDHK  243 (366)
T ss_pred             HHHHHHHHHHHhcccccCccceeEcCC--CC--EEEEehHHhhcCC
Confidence            345567788899999999999999875  87  9999999999643

PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=87.09  E-value=3.4  Score=34.18  Aligned_cols=63  Identities=17%  Similarity=0.107  Sum_probs=49.6

Q ss_pred             eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE----C--CEEcCCCCcccccCCCCCCE
Q 007773          114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----D--GEELEDQRLITDICKRNEAV  177 (590)
Q Consensus       114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif----~--Gk~LeD~~tL~dy~I~~gsv  177 (590)
                      |+..+|....++|+++.|+.++=++|+...++. ..+---|.|    +  ...|+..++|.++.......
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~-e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~   69 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLK-EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPP   69 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTS-SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSS
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCC-CccEEEEEEeecCCCcceeccCcccHHHHcCCCCCC
Confidence            566889999999999999999999999999986 367778888    2  24477888888887653333

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=86.85  E-value=3.2  Score=36.23  Aligned_cols=66  Identities=26%  Similarity=0.296  Sum_probs=45.7

Q ss_pred             eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE-c---Ccc-cccCCccccccCcccccceeEEeeeccc
Q 007773           43 SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-E---GRE-LARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        43 ~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-~---Gk~-L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ..++..++..|||..|+..+.+.+.| ...-||-- +   +.+ |.+.+.||.+.||.+|.+|.+-.+-.||
T Consensus        14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG   84 (88)
T PF14836_consen   14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG   84 (88)
T ss_dssp             EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred             cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence            46778899999999999999999999 55567763 2   233 6556789999999999998887776654

>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.16  E-value=0.7  Score=53.69  Aligned_cols=68  Identities=29%  Similarity=0.517  Sum_probs=45.2

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCCCHHHHHHHHccChH
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETINYINALDAE  491 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pfs~~~~~~i~~Ld~~  491 (590)
                      +---.+.=|++-=-|||.||||+..+  |+  ++-||-|+-|-.+..-.-|+     -|-.-|+.|.++.+--||.+
T Consensus       687 lagYSLvcYlLQvKDRHNGNILiD~E--GH--IIHIDFGFmLsnsPgnvgFE-----sAPFKLT~EylEvmgG~~~d  754 (847)
T KOG0903|consen  687 LAGYSLVCYLLQVKDRHNGNILIDEE--GH--IIHIDFGFMLSNSPGNVGFE-----SAPFKLTTEYLEVMGGLDSD  754 (847)
T ss_pred             HHHHHHHHHhhhcccccCCceEecCC--CC--EEEEeeeeEecCCCCCcccc-----cCchhhHHHHHHHhcCCcHH
Confidence            34445667888889999999999775  77  99999999998775544441     12223355545444444443

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=85.68  E-value=3.9  Score=34.08  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCccccc--CCccccccCccccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELAR--SNSRVRDYGLADGN   98 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~--D~~tL~dygI~~gs   98 (590)
                      .+|.| ..+|+.+.-+...++||.+|..-|.....- ...-.|+  |-.+.+.+  .+.+|.+.|+.+..
T Consensus         3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~   71 (77)
T cd01767           3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV   71 (77)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence            46777 568899999999999999999999877543 3344555  55777764  58899999998443

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=84.34  E-value=1.6  Score=44.80  Aligned_cols=69  Identities=14%  Similarity=0.114  Sum_probs=48.3

Q ss_pred             ccceeeeccc-eeeE-EEeecCCcHHHHHHHHHHh-cCCCCCCCcEEEE----ECCEEcCCCCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCG-KVFE-FHVERGRNVGYVKQQIAKK-GREFVDLKNQELI----CDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~G-k~~~-i~Vd~s~TV~~LK~kI~~~-~gi~~~~~~Q~Li----f~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      |.|++...++ ...+ .+...+.|+.+++++|..+ .++.  +..+++.    -+|+.|-|+.+|.+||..++++|.+
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~--~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v   76 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKIT--PYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV   76 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccC--ccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence            4455555443 2233 5677788999999776555 4554  4444443    4899999999999999999988875

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=83.88  E-value=4.2  Score=34.87  Aligned_cols=48  Identities=15%  Similarity=0.090  Sum_probs=39.9

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCc-cceEEEEcCcc
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-KKQKLVFEGRE   81 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~-~~QrLvf~Gk~   81 (590)
                      |+|.++.+|.++.+.+.++.+..+|+.+|+++.++.. ....|.|-..+
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde   49 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD   49 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence            5677888999999999999999999999999999864 45566675443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]

Probab=83.88  E-value=1.6  Score=44.80  Aligned_cols=66  Identities=21%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             EEEEE-EeCC-eEEE-EEecCCCCHHHHHHHHHHh-hCCCccceEEE----EcCcccccCCccccccCcccccce
Q 007773           34 ILIFL-SVGG-SVIP-MRVMESDSIASVKLRIQSY-NGFFVKKQKLV----FEGRELARSNSRVRDYGLADGNVL  100 (590)
Q Consensus        34 M~I~V-tl~G-~t~~-l~V~~sdTV~~LK~kIq~~-~Gip~~~QrLv----f~Gk~L~~D~~tL~dygI~~gstL  100 (590)
                      |.|++ +.++ -..+ ...+...||.+++.++.++ ..+.+..+++.    -.|+.|. |+++|++|+...+.++
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~-~~s~l~e~~~~s~~~i   74 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLI-DNSKLQEYGDGSGATI   74 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCcccc-chhHHHHhccCCCCEE
Confidence            56777 4443 2344 5677899999999766555 55666555444    3599998 8899999998777544

>COG5417 Uncharacterized small protein [Function unknown]

Probab=83.77  E-value=4.6  Score=34.16  Aligned_cols=67  Identities=6%  Similarity=0.069  Sum_probs=55.2

Q ss_pred             eeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC---CcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          114 VTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---KNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       114 Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~---~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      ++.-.|.++-+.+....+|..+-.-+.+...+..+.   .+.++.-.++.|.++..|.||+|.+|+.+.+
T Consensus        11 ~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei   80 (81)
T COG5417          11 FTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI   80 (81)
T ss_pred             eEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence            344578999999999999999998888877643212   4678889999999999999999999999875

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=82.93  E-value=5.7  Score=33.53  Aligned_cols=67  Identities=9%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcCC---CCcccccCCCCCCEEEE
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELED---QRLITDICKRNEAVIHL  180 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~LeD---~~tL~dy~I~~gsvI~L  180 (590)
                      +|.||..+|+.+.-....++|+.+|.+-|....+.   .....|+  |--+.+.+   ..+|.+.++.+.++|.+
T Consensus         6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~---~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGN---GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCC---CCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            46677777877777778899999999999876542   2445565  67788853   58999999998888875

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=82.61  E-value=2.2  Score=36.03  Aligned_cols=57  Identities=25%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccC-CCCCCEEEEEee
Q 007773          126 VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC-KRNEAVIHLLVR  183 (590)
Q Consensus       126 Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~-I~~gsvI~L~vr  183 (590)
                      |.+.++|.++++-+....... ......|.++|+.|+|...|+++. ++++++|.|+..
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~-~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETC-YLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHhCcccc-ceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence            567899999999999886522 157788999999999999998885 888999998743

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=82.09  E-value=5.7  Score=33.51  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=53.0

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccccC--CccccccCcccccceeE
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELARS--NSRVRDYGLADGNVLHL  102 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~~D--~~tL~dygI~~gstL~L  102 (590)
                      ..+|.| ..+|+.+.-....++|+.+|..-|+...+-. ..-.|+  |-.+.+..+  +.+|.+.|+....+|.|
T Consensus         4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v   77 (79)
T cd01772           4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV   77 (79)
T ss_pred             EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence            457788 5789999999999999999999999765533 334555  557777522  58999999998888765

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=82.03  E-value=0.55  Score=54.52  Aligned_cols=43  Identities=26%  Similarity=0.484  Sum_probs=36.3

Q ss_pred             hhhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCC
Q 007773          413 DEVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYS  459 (590)
Q Consensus       413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~  459 (590)
                      ...---.|+-|++.=.|||.||||+..+  |+  |+-||-|+.|-+.
T Consensus      1135 ~S~AGYsViTYILgIgDRHngNILId~d--Gh--LfHIDFGFILg~r 1177 (1374)
T PTZ00303       1135 ASAKLFLLLNYIFSIGDRHKGNVLIGTN--GA--LLHIDFRFIFSEK 1177 (1374)
T ss_pred             HHHHHHHHHHHHhccCcccCCceeEcCC--CC--EEEEecceeecCc
Confidence            3445567888999999999999999987  87  9999999999853

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=81.03  E-value=4.2  Score=35.25  Aligned_cols=60  Identities=12%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           44 VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      .+...++=..++..||..++.+.|+.-+.-.+++.+..|. ++.+|.+.+++-..++.+.+
T Consensus         4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~-~~k~L~dQcVqgeGlVQlnv   63 (88)
T PF11620_consen    4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLE-PHKSLVDQCVQGEGLVQLNV   63 (88)
T ss_dssp             EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE---TTSBTTTSS----SEEEEEE
T ss_pred             eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceec-CCccHHHhhccccCEEEEEE
Confidence            4556677788999999999999999999999999998887 89999999999888887644

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=80.54  E-value=8.1  Score=32.13  Aligned_cols=65  Identities=17%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEE
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVI  178 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le---D~~tL~dy~I~~gsvI  178 (590)
                      +|.||..+|+.+.-....++||++|.+-|......   .....|+  |-.+.+.   .+.+|.+.|+.+.+++
T Consensus         4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~---~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~   73 (77)
T cd01767           4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP---AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVF   73 (77)
T ss_pred             EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC---CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEE
Confidence            46677777888887888999999999999876542   3445565  5667774   4889999998844433

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=80.27  E-value=5.9  Score=34.69  Aligned_cols=69  Identities=10%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      +.+.|-..+|.++.+.|..+.+-..|-...+...|-.  .+..++.|+|+.++-++|-.|++.++++.|..
T Consensus        25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~--m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa   93 (103)
T COG5227          25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKN--MSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA   93 (103)
T ss_pred             cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcC--cceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence            3444444678889999999999999998888888876  78999999999999999999999998887654

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=80.04  E-value=8.8  Score=33.05  Aligned_cols=69  Identities=10%  Similarity=0.064  Sum_probs=51.5

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC--EEcC--------CCCcccccCCCCCCEE
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG--EELE--------DQRLITDICKRNEAVI  178 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G--k~Le--------D~~tL~dy~I~~gsvI  178 (590)
                      ..+|.||..+|+.+.-....++||++|.+-|... +..  ++...|+.+=  +.+.        ...||.+.|+.+.++|
T Consensus         4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~--~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L   80 (85)
T cd01774           4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KET--PEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVL   80 (85)
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCC--CCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEE
Confidence            3456677777777777777889999999999643 333  6778887533  6775        3679999999988887


Q ss_pred             EE
Q 007773          179 HL  180 (590)
Q Consensus       179 ~L  180 (590)
                      .+
T Consensus        81 ~V   82 (85)
T cd01774          81 FV   82 (85)
T ss_pred             EE
Confidence            75

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	590
2zvn_A	154	Nemo Cozi Domain Incomplex With Diubiquitin In P212		2e-15
2y5b_B	152	Structure Of Usp21 In Complex With Linear Diubiquit		3e-15
3u30_A	172	Crystal Structure Of A Linear-Specific Ubiquitin Fa		3e-15
3b08_A	152	Crystal Structure Of The Mouse Hoil1-L-Nzf In Compl		5e-15
2w9n_A	152	Crystal Structure Of Linear Di-Ubiquitin Length = 1		5e-15
2gbk_A	83	Crystal Structure Of The 9-10 Moad Insertion Mutant		3e-06
3jvz_X	81	E2~ubiquitin-Hect Length = 81		6e-06
1zgu_B	76	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-06
3ai5_A	307	Crystal Structure Of Yeast Enhanced Green Fluoresce		1e-05
3k9o_B	96	The Crystal Structure Of E2-25k And Ubb+1 Complex L		1e-05
2xk5_B	76	Crystal Structure Of K6-Linked Diubiquitin Length =		1e-05
2o6v_D	76	Crystal Structure And Solution Nmr Studies Of Lys48		1e-05
2zcb_A	76	Crystal Structure Of Ubiquitin P37aP38A Length = 76		1e-05
3zf7_s	128	High-resolution Cryo-electron Microscopy Structure		1e-05
3ldz_F	73	Crystal Structure Of Human Stam1 Vhs Domain In Comp		1e-05
2k6d_B	76	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		2e-05
3q3f_A	189	Engineering Domain-Swapped Binding Interfaces By Mu		2e-05
1yx5_B	98	Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Le		2e-05
3rul_A	79	New Strategy To Analyze Structures Of Glycopeptide-		2e-05
2znv_C	77	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		2e-05
2k25_A	103	Automated Nmr Structure Of The Ubb By Fapsy Length		2e-05
3dvg_X	80	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		2e-05
3v6c_B	91	Crystal Structure Of Usp2 In Complex With Mutated U		2e-05
3nob_A	78	Structure Of K11-Linked Di-Ubiquitin Length = 78		2e-05
1xd3_B	75	Crystal Structure Of Uchl3-Ubvme Complex Length = 7		2e-05
1cmx_B	76	Structural Basis For The Specificity Of Ubiquitin C		2e-05
1s1q_B	76	Tsg101(Uev) Domain In Complex With Ubiquitin Length		2e-05
1aar_A	76	Structure Of A Diubiquitin Conjugate And A Model Fo		2e-05
3olm_D	79	Structure And Function Of A Ubiquitin Binding Site		2e-05
1yiw_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		2e-05
2ld9_A	77	Backbone Structure Of Ubiquitin Determined Using Ba		2e-05
2khw_B	79	Solution Structure Of The Human Polymerase Iota Ubm		2e-05
4ii2_B	83	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-05
3v6e_B	91	Crystal Structure Of Usp2 And A Mutant Form Of Ubiq		2e-05
4ap4_C	80	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-05
2znv_B	76	Crystal Structure Of Human Amsh-Lp Dub Domain In Co		3e-05
3dvg_Y	79	Crystal Structure Of K63-Specific Fab Apu.3a8 Bound		3e-05
1otr_B	76	Solution Structure Of A Cue-Ubiquitin Complex Lengt		3e-05
4gsw_A	80	Crystal Structure Of Ubiquitin From Entamoeba Histo		3e-05
2ojr_A	111	Structure Of Ubiquitin Solved By Sad Using The Lant		3e-05
3u5e_m	128	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-05
4a18_K	129	T.Thermophila 60s Ribosomal Subunit In Complex With		4e-05
3ons_A	72	Crystal Structure Of Human Ubiquitin In A New Cryst		4e-05
2jvc_A	82	Nmr Solution Structure Of Ubiquitin Like Protein Le		4e-05
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		4e-05
4ii3_B	96	Crystal Structure Of S. Pombe Ubiquitin Activating		4e-04
4hcn_B	98	Crystal Structure Of Burkholderia Pseudomallei Effe		5e-05
3u5g_f	152	The Structure Of The Eukaryotic Ribosome At 3.0 A R		5e-05
1zw7_A	82	Elimination Of The C-Cap In Ubiquitin Structure, Dy		5e-05
3vdz_A	111	Tailoring Encodable Lanthanide-Binding Tags As Mri		6e-05
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		6e-05
3l0w_B	169	Structure Of Split Monoubiquitinated Pcna With Ubiq		7e-04
2o6v_B	76	Crystal Structure And Solution Nmr Studies Of Lys48		7e-05
2kdi_A	114	Solution Structure Of A UbiquitinUIM FUSION PROTEIN		9e-05
2fcs_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-04
1yj1_A	76	X-Ray Crystal Structure Of A Chemically Synthesized		1e-04
2gbj_A	84	Crystal Structure Of The 9-10 8 Glycine Insertion M		2e-04
2jwz_A	76	Mutations In The Hydrophobic Core Of Ubiquitin Diff		2e-04
1bt0_A	76	Structure Of Ubiquitin-Like Protein, Rub1 Length =		2e-04
1ogw_A	76	Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Le		3e-04
1ud7_A	76	Solution Structure Of The Designed Hydrophobic Core		3e-04
1c3t_A	76	Rotamer Strain As A Determinant Of Protein Structur		5e-04
3h7s_B	76	Crystal Structures Of K63-Linked Di- And Tri-Ubiqui		5e-04
3dbh_I	88	Structural Dissection Of A Gating Mechanism Prevent		6e-04
4i6l_B	76	Crystal Structure Of Otub1 In Complex With Ubiquiti		7e-04
2gbr_A	81	Crystal Structure Of The 35-36 Moad Insertion Mutan		8e-04
1sif_A	88	Crystal Structure Of A Multiple Hydrophobic Core Mu		9e-04

>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121 Space Group Length = 154

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 2   SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 60
Query: 92  YGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN 151
           Y +   + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    
Sbjct: 61  YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQ 118
Query: 152 QELICDGEELEDQRLITDICKRNEAVIHLLVR 183
           Q LI  G++LED R ++D   + E+ +HL++R
Sbjct: 119 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 150

>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 152

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound To Linear Ubiquitin Length = 172

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 23  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 81
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 82  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 139
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 140 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 168

>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With Linear Di- Ubiquitin Length = 152

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin Length = 152

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 4/149 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
              + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q L
Sbjct: 62  QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRL 119
Query: 155 ICDGEELEDQRLITDICKRNEAVIHLLVR 183
           I  G++LED R ++D   + E+ +HL++R
Sbjct: 120 IFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of Ubiquitin Length = 83

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 40  VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNV 99
           VGG  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + 
Sbjct: 15  VGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKEST 73
Query: 100 LHLVLRL 106
           LHLVLRL
Sbjct: 74  LHLVLRL 80

>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect Length = 81

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
           S  S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + 
Sbjct: 2   SGGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT- 60
Query: 89  VRDYGLADGNVLHLVLRL 106
           + DY +   + LHLVLRL
Sbjct: 61  LSDYNIQKESTLHLVLRL 78

>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F GR+L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent Protein- Ubiquitin Fusion Protein Length = 307

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 233 SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 291
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 292 YNIQKESTLHLVLRL 306

>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 96

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 62
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 63  QKESTLHLVLRL 74

>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin Length = 76

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G   ++Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F GR+L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QRESTLHLVLRL 73

>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A Length = 76

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 128

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRT-LADYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex With Ubiquitin Length = 73

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually Exclusive Folding: Insertion Of Ubiquitin Into Position 103 Of Barnase Length = 189

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 112 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 170
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 171 TLHLVLRL 178

>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX Length = 98

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of Glycopeptide-Target Complexes Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 77

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy Length = 103

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + +
Sbjct: 8   SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSE 66
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 67  YNIQKESTLHLVLRL 81

>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 80

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 64
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 65  QKESTLHLVLRL 76

>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 91

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G+ I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 17  SMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 75
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 76  YNIQKESTLHLVLRL 90

>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin Length = 78

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 5   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 63
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 64  QKESTLHLVLRL 75

>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex Length = 75

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C- Terminal Hydrolases Length = 76

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin Length = 76

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For Interaction With Ubiquitin Conjugating Enzyme (E2) Length = 76

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 79

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++++ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + +
Sbjct: 1   SNAMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-L 59
Query: 90  RDYGLADGNVLHLVLRL 106
            DY +   + LHLVLRL
Sbjct: 60  SDYNIQKESTLHLVLRL 76

>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized Ubiquitin Length = 76

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using Backbone Amide Noes And Backbone N-H And N-C Rdcs Length = 77

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 62
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 63  QKESTLHLVLRL 74

>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2- Ubiquitin Complex Length = 79

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 64
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 65  QKESTLHLVLRL 76

>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 83

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +V+ RIQ   G    +Q+L+F GR+L    + + DY +   +
Sbjct: 14  TLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRT-LADYNIQRES 72
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 73  TLHLVLRL 80

>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin Length = 91

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 17  SMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 75
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 76  YNIQKESTLHLVLRL 90

>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 80

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 7   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 65
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 66  QKESTLHLVLRL 77

>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex With Lys63-Linked Ubiquitin Dimer Length = 76

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QRESTLHLVLRL 73

>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To K63-Linked Di- Ubiquitin Length = 79

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 64
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 65  QRESTLHLVLRL 76

>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex Length = 76

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba Histolytica To 2.15 Angstrom Length = 80

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           SN   +   ++ G  I + V  +DSI ++K +IQ   G    +Q+L+F G++L    + +
Sbjct: 1   SNAMQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKT-L 59
Query: 90  RDYGLADGNVLHLVLRL 106
            DY +   + LHLVLRL
Sbjct: 60  SDYNIQKESTLHLVLRL 76

>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide- Binding Tag Length = 111

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 42  TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 100
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 101 TLHLVLRL 108

>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 128

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 129

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal Form Length = 72

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLR 105
              + LHLVLR
Sbjct: 62  QKESTLHLVLR 72

>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein Length = 82

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  +D++ +VK +I    G    +Q+L+F G++L  SN+ + D
Sbjct: 5   SMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNA-MSD 63
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + LHLVLRL
Sbjct: 64  YNVQKESTLHLVLRL 78

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 23  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 81
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 82  QKESTLHLVLRL 93

>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg Length = 96

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL 161
           LV R S +Q I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++L
Sbjct: 14  LVPRGSHMQ-IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQL 70
Query: 162 EDQRLITDICKRNEAVIHLLVR 183
           ED R ++D   + E+ +HL++R
Sbjct: 71  EDGRTLSDYNIQKESTLHLVLR 92

>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector Protein Chbp In Complex With Ubiquitin Length = 98

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 25  IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 83
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 84  QKESTLHLVLRL 95

>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome B Length = 152

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure, Dynamics And Thermodynamic Consequences Length = 82

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G+ I + V  SD+I +VK +IQ+  G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms Length = 111

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 42  TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 100
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 101 TLHLVLRL 108

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   +
Sbjct: 7   TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKES 65
Query: 99  VLHLVLRL 106
            LHLVLRL
Sbjct: 66  TLHLVLRL 73

>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin In Position Two Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of Lys48-Linked Tetraubiquitin At Neutral Ph Length = 76

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G +L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QRESTLHLVLRL 73

>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN Length = 114

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + V  SD+I +VK +IQ   G    +Q+L++ G++L    + + DY +   +
Sbjct: 16  TLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRT-LSDYNIQRES 74
Query: 99  VLHLVLRL---SDLQAITVTTVCGKVFEFHVERGRNVG 133
            LHLVLRL   S   A     +  K  E  ++  RN G
Sbjct: 75  TLHLVLRLRGGSMGGAADEEELIRKAIELSLKESRNSG 112

>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [l-Gln35]ubiquitin With A Cubic Space Group Length = 76

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ        +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized [d-Gln35]ubiquitin Length = 76

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ        +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 62  QKESTLHLVLRL 73

>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant Of Ubiquitin. Length = 84

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 44  VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103
            I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LHLV
Sbjct: 20  TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLHLV 78
Query: 104 LRL 106
           LRL
Sbjct: 79  LRL 81

>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin Differentially Affect Its Recognition By Receptor Proteins Length = 76

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + LH VLRL
Sbjct: 62  QKESTLHSVLRL 73

>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1 Length = 76

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
           ++ G  I + +  +D+I  +K R++   G    +Q+L++ G++LA  +   +DY +  G+
Sbjct: 7   TLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTAKDYNIEGGS 65
Query: 99  VLHLVLRL 106
           VLHLVL L
Sbjct: 66  VLHLVLAL 73

>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67 Length = 76

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++     + + DY +
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              +  HLVLRL
Sbjct: 62  QKESTXHLVLRL 73

>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core Mutant Of Ubiquitin, 1d7 Length = 76

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           +FL ++ G  + + V  SD++ + K +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 3   VFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 61
Query: 95  ADGNVLHLVLRL 106
              + +HLVLRL
Sbjct: 62  QKESTIHLVLRL 73

>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural Specificity Length = 76

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 35  LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           L   ++ G  + + +  SD++ ++K +IQ   G    +Q+L+F G++L    + + DY L
Sbjct: 3   LFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNL 61
Query: 95  ADGNVLHLVLRL 106
              + +HLVLRL
Sbjct: 62  QKESTIHLVLRL 73

>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 88

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
           S  S+LI + ++ G  I + +  +D +  +K R++   G   ++Q+L++ G+++    + 
Sbjct: 9   SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA 68
Query: 89  VRDYGLADGNVLHLVLRL 106
             DY +  G+VLHLVLRL
Sbjct: 69  A-DYKILGGSVLHLVLRL 85

>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin Variant Length = 76

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
           S+ IF+ ++ G  I + V  SD+I +VK +IQ   G    +QKL+F  ++L    + + D
Sbjct: 2   SMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRT-LSD 60
Query: 92  YGLADGNVLHLVLRL 106
           Y +   + L+LVLRL
Sbjct: 61  YNIHKESFLYLVLRL 75

>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of Ubiquitin Length = 81

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 39  SVGGSVIPMRVMESDSIASVKLRIQSYNGFFV-----KKQKLVFEGRELARSNSRVRDYG 93
           ++ G  I + V  SD+I +VK +IQ   G +       +Q+L+F G++L    + + DY 
Sbjct: 7   TLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT-LSDYN 65
Query: 94  LADGNVLHLVLRL 106
           +   + LHLVLRL
Sbjct: 66  IQKESTLHLVLRL 78

>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant Of Ubiquitin Length = 88

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 35  LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           L   ++ G    + +  SD+I ++K +IQ   G    +Q+L+F G++L    + + DY +
Sbjct: 12  LFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNI 70
Query: 95  ADGNVLHLVLRL 106
              + LHLVLRL
Sbjct: 71  QKESTLHLVLRL 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	590
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	1e-24
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	2e-08
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	1e-24
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	3e-08
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	3e-24
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-09
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	1e-04
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	2e-14
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	9e-06
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-13
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	2e-09
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	2e-13
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	1e-07
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	5e-13
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	2e-09
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	7e-13
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	7e-07
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-12
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	1e-07
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	1e-12
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	5e-08
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-12
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	2e-08
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-12
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	2e-07
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	2e-12
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-09
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-12
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	5e-09
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	4e-12
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	2e-07
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	4e-12
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	3e-06
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	5e-12
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	1e-06
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	9e-12
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	1e-08
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	1e-11
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	5e-07
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	2e-11
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	8e-07
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	2e-11
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	6e-08
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	2e-11
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	1e-05
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	3e-11
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	6e-07
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	3e-11
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	9e-06
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-11
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-08
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	4e-11
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	9e-08
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	5e-11
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	7e-07
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	6e-11
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	7e-08
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	8e-11
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	4e-05
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-10
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	7e-08
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	1e-10
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	9e-08
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	2e-10
1we6_A	111	Splicing factor, putative; structural genomics, ub	2e-10
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	5e-10
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	3e-08
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	5e-10
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	3e-08
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	9e-10
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-06
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-09
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	1e-07
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-09
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	2e-07
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	4e-09
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	2e-06
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	5e-09
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	7e-09
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	2e-07
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	8e-09
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-07
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	2e-08
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	9e-07
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	5e-08
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	7e-08
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	6e-08
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	3e-04
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-07
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	3e-06
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	2e-07
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	1e-06
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-04
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	2e-06
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	5e-06
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	9e-05
3akj_A	325	CTKA; protein kinase, transferase; 2.00A {Helicoba	5e-04
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	8e-04

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 99.3 bits (247), Expect = 1e-24
 Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 59

Query: 93  GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQ 152
            +   + LHLVLRL     I V T+ GK     VE    +  VK +I  K  E +    Q
Sbjct: 60  NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQ 117

Query: 153 ELICDGEELEDQRLITDICKRNEAVIHLLVR 183
            LI  G++LED R ++D   + E+ +HL++R
Sbjct: 118 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LH
Sbjct: 86  GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLH 144

Query: 102 LVLRL 106
           LVLRL
Sbjct: 145 LVLRL 149

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 99.7 bits (248), Expect = 1e-24
 Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 9/170 (5%)

Query: 20  GNFTHRPEKLS-----NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQ 73
           G+  H     S        + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQ 61

Query: 74  KLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVG 133
           +L+F G++L    + + DY +   + LHLVLRL     I V T+ GK     VE    + 
Sbjct: 62  RLIFAGKQLEDGRT-LSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE 120

Query: 134 YVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR 183
            VK +I  K  E +    Q LI  G++LED R ++D   + E+ +HL++R
Sbjct: 121 NVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 52.7 bits (126), Expect = 3e-08
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LH
Sbjct: 106 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLH 164

Query: 102 LVLRL 106
           LVLRL
Sbjct: 165 LVLRL 169

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 98.5 bits (245), Expect = 3e-24
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR-VRDYGLADGNV 99
            G+   + +  S S++ +K +I    G    +Q+L      +A  +   +   GL  G+ 
Sbjct: 11  AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST 70

Query: 100 LHLV-LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG 158
           + LV  +  +  +I V    G+   + V   + V ++KQQ++    E V      L  +G
Sbjct: 71  VLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEG 128

Query: 159 EELEDQRLITDICKRNEAVIHLLVR 183
           + LEDQ  + +   +  + + + +R
Sbjct: 129 KPLEDQLPLGEYGLKPLSTVFMNLR 153

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 18  FPGNFTHRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV 76
            PG+        S++ + I + +  G      V  + ++A +K ++    G       L 
Sbjct: 66  GPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 125

Query: 77  FEGRELARSNSRVRDYGLADGNVLHLVLRL 106
           FEG+ L      + +YGL   + + + LRL
Sbjct: 126 FEGKPLEDQLP-LGEYGLKPLSTVFMNLRL 154

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITD 169
           +TV  + G  F+  +    +V  +K QI +K    V    Q L     G  L+D+  +  
Sbjct: 5   LTVKMLAGNEFQVSLSSSMSVSELKAQITQK--IGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 170 ICKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIE 202
                 + + L+V KS +  +  V+ +   S  
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSST 95

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 15/82 (18%), Positives = 38/82 (46%)

Query: 24  HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA 83
           H     +   I + +        + V  +++++S+K +I       +K+ +L + G ELA
Sbjct: 6   HHHSHAAVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA 65

Query: 84  RSNSRVRDYGLADGNVLHLVLR 105
                + +YG+ + + + + L+
Sbjct: 66  DDYRNLNEYGITEFSEIVVFLK 87

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 98  NVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157
           +  H          +TV     K F   V+R   V  +K +I     E   +K  +L   
Sbjct: 4   HHHHHSHAAVRKIHVTVKF-PSKQFTVEVDRTETVSSLKDKIHIV--ENTPIKRMQLYYS 60

Query: 158 GEELEDQRLITDICK-RNEAVIHLLVRKSAKVR 189
           G EL D     +       + I + ++   + +
Sbjct: 61  GIELADDYRNLNEYGITEFSEIVVFLKSINRAK 93

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 16/78 (20%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  + + + ++ G    ++V E + ++++K  +       V++Q+L+F+G+ LA     
Sbjct: 4   GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKR- 62

Query: 89  VRDYGLADGNVLHLVLRL 106
           + DY +   + L+LV++ 
Sbjct: 63  LSDYSIGPNSKLNLVVKP 80

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV  + G+     V     V  +KQ +++K    V    Q L+  G+ L D + ++D  
Sbjct: 10  LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVR--QQRLLFKGKALADGKRLSDYS 67

Query: 172 KRNEAVIHLLVR 183
               + ++L+V+
Sbjct: 68  IGPNSKLNLVVK 79

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%)

Query: 23  THRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81
           + R    S  S+LI + ++ G  I + +  +D +  +K R++   G   ++Q+L++ G++
Sbjct: 2   SRRASVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ 61

Query: 82  LARSNSRVRDYGLADGNVLHLVLRL 106
           +    +   DY +  G+VLHLVLRL
Sbjct: 62  MNDEKT-AADYKILGGSVLHLVLRL 85

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    V  +K+++ +K  E +  + Q LI  G+++ D++   D  
Sbjct: 15  IKVKTLTGKEIEIDIEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYK 72

Query: 172 KRNEAVIHLLVR 183
               +V+HL++R
Sbjct: 73  ILGGSVLHLVLR 84

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 63.4 bits (155), Expect = 5e-13
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D +  +K R++   G   ++Q+L++ G+++    +   DY +  G+VLH
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKT-AADYKILGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 53.0 bits (128), Expect = 2e-09
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    V  +K+++ +K  E +  + Q LI  G+++ D++   D  
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 172 KRNEAVIHLLVR 183
               +V+HL++ 
Sbjct: 61  ILGGSVLHLVLA 72

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 64.5 bits (157), Expect = 7e-13
 Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           +    IF  ++ G  I + V  SD+I +VK +IQ   G    +Q+L++ G++L    + +
Sbjct: 7   HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRT-L 65

Query: 90  RDYGLADGNVLHLVLRL---SDLQAITVTTVCGKVFEFHVERGRNVG 133
            DY +   + LHLVLRL   S   A     +  K  E  ++  RN G
Sbjct: 66  SDYNIQRESTLHLVLRLRGGSMGGAADEEELIRKAIELSLKESRNSG 112

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 100 LHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159
           +H      + Q I   T+ GK     VE    +  VK +I  K     D   Q LI  G+
Sbjct: 1   MHHHHHHGEFQ-IFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD--QQRLIWAGK 57

Query: 160 ELEDQRLITDICKRNEAVIHLLVR 183
           +LED R ++D   + E+ +HL++R
Sbjct: 58  QLEDGRTLSDYNIQRESTLHLVLR 81

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            + I + ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 3   HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 61

Query: 92  YGLADGNVLHLVLRL 106
           Y + + + L+L+L+L
Sbjct: 62  YNIHNHSALYLLLKL 76

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ G+     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 6   IVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 63

Query: 172 KRNEAVIHLLVR 183
             N + ++LL++
Sbjct: 64  IHNHSALYLLLK 75

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 8/142 (5%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
             V P + +  D  ++ + ++   +G   ++  + +             D  L   + L 
Sbjct: 44  ADVAPGKSIGGDIFSNREGKLPGKSGRTWREADINYTSGFRN------SDRILYSSDWLI 97

Query: 102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL 161
                     I V T+ GK     VE    +  VK +I  K     D   Q LI  G++L
Sbjct: 98  YKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ--QRLIFAGKQL 155

Query: 162 EDQRLITDICKRNEAVIHLLVR 183
           ED R ++D   + E+ +HL++R
Sbjct: 156 EDGRTLSDYNIQKESTLHLVLR 177

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} Length = 189

 Score = 52.3 bits (125), Expect = 5e-08
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 18  FPGNFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF 77
           +  ++            +   ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F
Sbjct: 91  YSSDWLIYKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 150

Query: 78  EGRELARSNSRVRDYGLADGNVLHLVLRL 106
            G++L    + + DY +   + LHLVLRL
Sbjct: 151 AGKQLEDGRT-LSDYNIQKESTLHLVLRL 178

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 5/74 (6%), Positives = 10/74 (13%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           +      V        V E   +       +       + +       E           
Sbjct: 1   MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEVKD-ASLV 59

Query: 93  GLADGNVLHLVLRL 106
                     V   
Sbjct: 60  DYVQVRQPIFVAHT 73

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 6/72 (8%), Positives = 16/72 (22%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
            T   V  +     VE    V        +  +   +   +       E  + +  + + 
Sbjct: 3   DTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTE--IKLFNKWSFEEVEVKDASLVD 60

Query: 172 KRNEAVIHLLVR 183
                    +  
Sbjct: 61  YVQVRQPIFVAH 72

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + D
Sbjct: 3   HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSD 61

Query: 92  YGLADGNVLHLVLRL 106
           Y +   + L L+LRL
Sbjct: 62  YNIQKWSTLFLLLRL 76

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 6   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 63

Query: 172 KRNEAVIHLLVR 183
            +  + + LL+R
Sbjct: 64  IQKWSTLFLLLR 75

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 2/97 (2%)

Query: 11  VLEESLNFPGNFTHRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF 69
           ++EE  +        P   S     + L    G  + + V  +D++  +K R+ +  G  
Sbjct: 1   MIEEKSDIETLDIPEPPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE 60

Query: 70  VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
              Q+  F GR L     +  +  +    V+ +++  
Sbjct: 61  PGSQRWFFSGRPLTDKM-KFEELKIPKDYVVQVIVSQ 96

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + +    GK  +  V     V ++K+++     E V+  +Q     G  L D+    ++ 
Sbjct: 26  LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA--EGVEPGSQRWFFSGRPLTDKMKFEELK 83

Query: 172 KRNEAVIHLLVRK 184
              + V+ ++V +
Sbjct: 84  IPKDYVVQVIVSQ 96

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D +  +K R++   G   ++Q+L++ G+++    +   DY +  G+VLH
Sbjct: 10  GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKT-AADYKILGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    V  +K+++ +K  E +  + Q LI  G+++ D++   D  
Sbjct: 3   IKVKTLTGKEIEIDIEPTDKVERIKERVEEK--EGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 172 KRNEAVIHLLVR 183
               +V+HL++ 
Sbjct: 61  ILGGSVLHLVLA 72

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 2/76 (2%)

Query: 32  DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVR 90
             + +F+ ++ G    + +  SD+I ++K +IQ   G    +Q+L+F G++L    + + 
Sbjct: 8   QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LS 66

Query: 91  DYGLADGNVLHLVLRL 106
           DY +   + LHLVLRL
Sbjct: 67  DYNIQKESTLHLVLRL 82

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 101 HLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE 160
           H          + + T+ GK F   +E    +  +K +I  K     D   Q LI  G++
Sbjct: 1   HHHHHHLQGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPD--QQRLIFAGKQ 58

Query: 161 LEDQRLITDICKRNEAVIHLLVR 183
           LED R ++D   + E+ +HL++R
Sbjct: 59  LEDGRTLSDYNIQKESTLHLVLR 81

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 63.8 bits (155), Expect = 4e-12
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 17/152 (11%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR-VRDYGLADGNVL 100
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L   + R + DY +   + L
Sbjct: 10  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL--EDGRTLSDYNIQKESTL 67

Query: 101 HLVLRLSDLQAITVTTVCGKV---FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD 157
           HLVLRL      T+  V           ++   ++ + +  I  +  + VD     L   
Sbjct: 68  HLVLRLRGGGGETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVD-----LTFG 122

Query: 158 GEELEDQRLITDICKR------NEAVIHLLVR 183
            + L D    + +  R      +EA       
Sbjct: 123 AKYLLDIIKGSSLSDRVGIRLSSEAPALFQFD 154

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 61.8 bits (150), Expect = 5e-12
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 2/95 (2%)

Query: 13  EESLNFPGNFTHRPEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK 71
            + L    N     E     ++ IF+ ++ G  I + V  SD+I +VK +IQ   G    
Sbjct: 15  GDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD 74

Query: 72  KQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL 106
           +Q+L+F G++L    + + DY +   + LHLVLRL
Sbjct: 75  QQRLIFAGKQLEDGRT-LSDYNIQKESTLHLVLRL 108

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I    +E +    Q LI  G++LED R ++D  
Sbjct: 38  IFVKTLTGKTITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYN 95

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 96  IQKESTLHLVLR 107

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 60.0 bits (146), Expect = 9e-12
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
               P+ V    SI  +K  +    G    + +++F G+EL    + V++  L   +++H
Sbjct: 10  SYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLT-VQNCDLEQQSIVH 68

Query: 102 LVLRL 106
           +V R 
Sbjct: 69  IVQRP 73

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V       F   V+   ++  +K+ +AK+  + V      +I  G+EL +   + +  
Sbjct: 3   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKQ--QGVPADQLRVIFAGKELPNHLTVQNCD 60

Query: 172 KRNEAVIHLLVR 183
              ++++H++ R
Sbjct: 61  LEQQSIVHIVQR 72

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 2   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 60

Query: 93  GLADGNVLHLVLRL 106
            +   + LHLVLRL
Sbjct: 61  NIQKESTLHLVLRL 74

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 4   IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 61

Query: 172 KRNEAVIHLLVRK--SAKVRAKPVQKD 196
            + E+ +HL++R    A +R  P ++D
Sbjct: 62  IQKESTLHLVLRLRGYADLREDPDRQD 88

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 59

Query: 93  GLADGNVLHLVLRL 106
            +   + LHLVLRL
Sbjct: 60  NIQKESTLHLVLRL 73

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 46.7 bits (111), Expect = 8e-07
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I    +E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQD--KEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++ + I + +  G      V  + ++A +K ++    G       L FEG+ L      +
Sbjct: 2   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLP-L 60

Query: 90  RDYGLADGNVLHLVLRL 106
            +YGL   + + + LRL
Sbjct: 61  GEYGLKPLSTVFMNLRL 77

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V    G+   + V   + V ++KQQ++    E V      L  +G+ LEDQ  + +  
Sbjct: 7   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGL--EGVQDDLFWLTFEGKPLEDQLPLGEYG 64

Query: 172 KRNEAVIHLLVR 183
            +  + + + +R
Sbjct: 65  LKPLSTVFMNLR 76

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  +   +  +D ++ +K++I    G    KQKL +EG  +  SNS +  Y +A G V+H
Sbjct: 45  GQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNS-LAYYNMASGAVIH 103

Query: 102 LVLRL 106
           L L+ 
Sbjct: 104 LALKE 108

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 100 LHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE 159
           + + +++ ++Q  T   + G+   F +     V  +K +I +     +    Q+L  +G 
Sbjct: 26  VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEA--TGMPAGKQKLQYEGI 83

Query: 160 ELEDQRLITDICKRNEAVIHLLVR 183
            ++D   +      + AVIHL ++
Sbjct: 84  FIKDSNSLAYYNMASGAVIHLALK 107

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 44  VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV 103
                +     +  ++ +IQ         Q+L + G+++      + DY +   + + L+
Sbjct: 16  HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQM-EDGHTLFDYEVRLNDTIQLL 74

Query: 104 LRLS 107
           +R S
Sbjct: 75  VRQS 78

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           I V T+ G+       + R   V  ++++I +          Q L   G+++ED   + D
Sbjct: 5   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPG--LQRLFYRGKQMEDGHTLFD 62

Query: 170 ICKRNEAVIHLLVRKS 185
              R    I LLVR+S
Sbjct: 63  YEVRLNDTIQLLVRQS 78

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 58.8 bits (143), Expect = 3e-11
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 26  PEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR 84
                +  +   + ++ GS   + V   D++  VK +I+      V KQ L+ +G  + R
Sbjct: 3   HHHHHHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR 62

Query: 85  SNSRVRDYGLADGNVLHLVL 104
            +  V    +   + + L +
Sbjct: 63  EDLTVEQCQIVPTSDIQLEV 82

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-EELEDQRLITDI 170
             V  + G  FE  V+    +  VKQ+I +   + + +  Q LI DG   L +   +   
Sbjct: 13  FLVENLNGSSFELEVDYRDTLLVVKQKIERS--QHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 171 CKRNEAVIHLLV 182
                + I L V
Sbjct: 71  QIVPTSDIQLEV 82

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 58.1 bits (141), Expect = 4e-11
 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + IF+ ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDY 59

Query: 93  GLADGNVLHLVLRL 106
            +   + LHLVLRL
Sbjct: 60  NIQRESTLHLVLRL 73

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQRESTLHLVLR 72

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++ + I + +  G      V  + ++A +K ++    G       L FEG+ L      +
Sbjct: 2   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQL-PL 60

Query: 90  RDYGLADGNVLHLVLRL 106
            +YGL   + + + LRL
Sbjct: 61  GEYGLKPLSTVFMNLRL 77

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V    G+   + V   + V ++KQQ++       D     L  +G+ LEDQ  + +  
Sbjct: 7   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDD--LFWLTFEGKPLEDQLPLGEYG 64

Query: 172 KRNEAVIHLLVR 183
            +  + + + +R
Sbjct: 65  LKPLSTVFMNLR 76

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 58.2 bits (141), Expect = 5e-11
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 2/84 (2%)

Query: 23  THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82
            H    +   S+ +F+     +    V   +++A +K  + S  G   + Q ++  G  L
Sbjct: 9   HHSSGLVPRGSMQLFVR-AQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPL 67

Query: 83  ARSNSRVRDYGLADGNVLHLVLRL 106
               + +   G+     L +  R+
Sbjct: 68  -EDEATLGQCGVEALTTLEVAGRM 90

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 93

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V     ++  F V     V  +K  +A       +  +Q ++  G  LED+  +    
Sbjct: 22  LFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPE--DQVVLLAGAPLEDEATLGQCG 77

Query: 172 KRNEAVIHLLVR 183
                 + +  R
Sbjct: 78  VEALTTLEVAGR 89

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 58.2 bits (141), Expect = 6e-11
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  I +F+ +  G      +  +  I  +K +I+   G   K+Q+L F+G+ L      
Sbjct: 4   GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLG- 62

Query: 89  VRDYGLADGNVLHLVLRL 106
           +  YG+ D + L L  + 
Sbjct: 63  LGIYGIQDSDTLILSKKK 80

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V    G  + + +     +  +KQQI  +         Q+L   G+ L+D   +    
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKK--QQQLEFQGQVLQDWLGLGIYG 67

Query: 172 KRNEAVIHLLVR 183
            ++   + L  +
Sbjct: 68  IQDSDTLILSKK 79

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 57.8 bits (140), Expect = 8e-11
 Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 30  SNDSILIF---LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN 86
            +  + I    +    +     V    +I  ++ R+ +      + Q+L + G++L    
Sbjct: 4   GSSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGY 63

Query: 87  SRVRDYGLADGNVLHLVLRL 106
           + + DY +   +++ L++R 
Sbjct: 64  T-LFDYDVGLNDIIQLLVRP 82

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 112 ITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           I V T+ G        V R   +  +++++       V  + Q L   G++LE+   + D
Sbjct: 10  IQVRTIDGSKTCTIEDVSRKATIEELRERVWAL--FDVRPECQRLFYRGKQLENGYTLFD 67

Query: 170 ICKRNEAVIHLLVR 183
                  +I LLVR
Sbjct: 68  YDVGLNDIIQLLVR 81

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG 93
           + I +  G     + V    ++   K  I   NG  V  Q+L++ G+ L + +  V  Y 
Sbjct: 29  LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESYH 87

Query: 94  LADGNVLHLVLR 105
           + DG+ +HLV  
Sbjct: 88  IQDGHSVHLVKS 99

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 91  DYGLADGNVLHLVLRLSDLQAITVTTVCGKV-FEFHVERGRNVGYVKQQIAKKGREFVDL 149
           DY +     L+    +S    + +    G+  +E +V     V   K+ I K     + +
Sbjct: 12  DYDIPTTENLYFQGAMS----LNIHIKSGQDKWEVNVAPESTVLQFKEAINKA--NGIPV 65

Query: 150 KNQELICDGEELEDQRLITDICKRNEAVIHLLVRK 184
            NQ LI  G+ L+D + +     ++   +HL+  +
Sbjct: 66  ANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 56.4 bits (137), Expect = 1e-10
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 33  SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           S+ I +  G     + V    ++   K  I   NG  V  Q+L++ G+ L + +  V  Y
Sbjct: 4   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKIL-KDDQTVESY 62

Query: 93  GLADGNVLHLVLR 105
            + DG+ +HLV  
Sbjct: 63  HIQDGHSVHLVKS 75

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 48.7 bits (117), Expect = 9e-08
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 3/74 (4%)

Query: 112 ITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170
           + +    G+  +E +V     V   K+ I K     + + NQ LI  G+ L+D + +   
Sbjct: 5   LNIHIKSGQDKWEVNVAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESY 62

Query: 171 CKRNEAVIHLLVRK 184
             ++   +HL+  +
Sbjct: 63  HIQDGHSVHLVKSQ 76

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 24  HRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELA 83
           H     S+ +I + +  GG  IP+ V    ++  +K ++Q       + QKL+F+G+ L 
Sbjct: 3   HHHHHHSHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV 62

Query: 84  RSNSRVRDYGLADGNVLHLV 103
              S ++   +  G  L L+
Sbjct: 63  -ETSTLKQSDVGSGAKLMLM 81

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 33  SILIFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            +       G  + + V   S+++ S+K +I         KQKL  +   L  + S +  
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS-LAH 89

Query: 92  YGLADGNVLHLVLRL 106
           Y +  G +L L LR 
Sbjct: 90  YNVGAGEILTLSLRE 104

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 26  PEKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR 84
                 DS+ + + ++        V    ++   K  I +      +KQ+L+++GR L  
Sbjct: 10  TAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD 69

Query: 85  SNSRVRDYGLADGNVLHLVLR 105
               +++Y +  G V+HLV R
Sbjct: 70  DKK-LQEYNV-GGKVIHLVER 88

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+  +   F V    NV   K+ IA      +  + Q LI  G  L+D + + +  
Sbjct: 20  VLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQE-Y 76

Query: 172 KRNEAVIHLLVR 183
                VIHL+ R
Sbjct: 77  NVGGKVIHLVER 88

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 55.4 bits (134), Expect = 5e-10
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
             DS+ + + ++        V    ++   K  I +      +KQ+L+++GR L      
Sbjct: 2   EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKK- 60

Query: 89  VRDYGLADGNVLHLVLRL 106
           +++Y +  G V+HLV R 
Sbjct: 61  LQEYNV-GGKVIHLVERA 77

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 50.3 bits (121), Expect = 3e-08
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+  +   F V    NV   K+ IA      +  + Q LI  G  L+D + + +  
Sbjct: 8   VLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQE-Y 64

Query: 172 KRNEAVIHLLVRK 184
                VIHL+ R 
Sbjct: 65  NVGGKVIHLVERA 77

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 55.0 bits (133), Expect = 9e-10
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 23  THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82
           +    + S   I + +          V ++ +I  +K  I         +  L+F G+ L
Sbjct: 12  SGLVPRGSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL 71

Query: 83  ARSNSRVRDYGLADGNVLHLVLR 105
              +S +   G+ DG  +HLV++
Sbjct: 72  KDPDS-LAQCGVRDGLTVHLVIK 93

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  +F V     +  +K++I+++           LI  G+ L+D   +    
Sbjct: 25  VTVKTPKDK-EDFSVTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCG 81

Query: 172 KRNEAVIHLLVRKSAK 187
            R+   +HL++++  +
Sbjct: 82  VRDGLTVHLVIKRQHR 97

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 27  EKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN 86
            + S+  I + +          + E+ ++   K +I  Y      +  L+F G+ L R  
Sbjct: 11  REPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQ 69

Query: 87  SRVRDYGLADGNVLHLVLRL 106
             +   G+ DG+ +H+V+R 
Sbjct: 70  DILSQRGILDGSTVHVVVRS 89

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           ++V T      EF +    NV   K+QI+K      +     LI  G+ L DQ +++   
Sbjct: 20  VSVKTPQDC-HEFFLAENSNVRRFKKQISKY--LHCNADRLVLIFTGKILRDQDILSQRG 76

Query: 172 KRNEAVIHLLVRKSAKVRA 190
             + + +H++VR  +   +
Sbjct: 77  ILDGSTVHVVVRSHSGPSS 95

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 23  THRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGREL 82
            +   +     + + +          V E+ S+   K  I         +  L+F G+ L
Sbjct: 15  ENLYFQGHPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL 74

Query: 83  ARSNSRVRDYGLADGNVLHLVLR 105
              ++ +  +G+ DG  +HLV++
Sbjct: 75  KDQDT-LSQHGIHDGLTVHLVIK 96

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  EF V    +V   K++I+K+           LI  G+ L+DQ  ++   
Sbjct: 28  VTVKTPKEK-EEFAVPENSSVQQFKEEISKR--FKSHTDQLVLIFAGKILKDQDTLSQHG 84

Query: 172 KRNEAVIHLLVRKSAK 187
             +   +HL+++   +
Sbjct: 85  IHDGLTVHLVIKTQNR 100

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 54.1 bits (130), Expect = 4e-09
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
               I + +          V E+ S+   K  I         +  L+F G+ L +    +
Sbjct: 29  EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKIL-KDQDTL 87

Query: 90  RDYGLADGNVLHLVLR 105
             +G+ DG  +HLV++
Sbjct: 88  IQHGIHDGLTVHLVIK 103

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  EF V    +V   K+ I+K+           LI  G+ L+DQ  +    
Sbjct: 35  VTVKTPKEK-EEFAVPENSSVQQFKEAISKR--FKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 172 KRNEAVIHLLVRKSAKVRAKP 192
             +   +HL++++     +  
Sbjct: 92  IHDGLTVHLVIKRDPNSSSVD 112

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           +T+ T+  + F+  ++    V  +K++I  +KG++   +  Q+LI  G+ L D   + + 
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 171 CKRNEAVIHLLVRKSAKV 188
               +  + ++V K   V
Sbjct: 63  KIDEKNFVVVMVTKPKAV 80

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 13/68 (19%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGN 98
                + +   +++ ++K +I+S  G   F V  QKL++ G+ L    + +++Y + + N
Sbjct: 10  QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA-LKEYKIDEKN 68

Query: 99  VLHLVLRL 106
            + +++  
Sbjct: 69  FVVVMVTK 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 6e-09
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 34/207 (16%)

Query: 406 GPRAFPVDEVHKIS-VLDIRLA-NTDRHAGNILVSKDEG-GQIKLVPIDHGYCLPYSFED 462
             + F    V ++   L +R A    R A N+L+    G G+  +  +D   CL Y  + 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LD--VCLSYKVQC 178

Query: 463 CTFDWLYWPQARQPYSPETI-NYINAL--DAEKDIELLKFHGWDIPPECARV-LRISTML 518
                ++W   +   SPET+   +  L    + +      H  +I      +   +  +L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 519 LKKGVDRGL------------TPFDIGCIMCRKTL---KDESVIEQI-----VREAQDAV 558
             K  +  L              F++ C    K L   + + V + +        + D  
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSC----KILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 559 LPGTSEDGFLESVASIMDRHLDDLTPQ 585
               + D     +   +D    DL  +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPRE 321

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 80/557 (14%), Positives = 169/557 (30%), Gaps = 156/557 (28%)

Query: 63  QSYNGFFVKKQKLVFEGREL---ARSNSRVRDYGLADG---NVLHL-VLRLSDLQA---- 111
           Q +  + V + +   + R+     R    V   G+  G     + L V     +Q     
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWVALDVCLSYKVQCKMDF 182

Query: 112 ----ITVTTVC----------------GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKN 151
               + +                       +    +   N+      I  + R  +  K 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 152 QE---LICDGEELEDQRLIT--DI-CK-----RNEAVIHLLVRKSAKVRAKPVQKDFEVS 200
            E   L+     +++ +     ++ CK     R + V   L   SA            ++
Sbjct: 243 YENCLLVLL--NVQNAKAWNAFNLSCKILLTTRFKQVTDFL---SAATTTHISLDHHSMT 297

Query: 201 IEATELNEKGADVVGEHQFETLFMGYQIRERKLLQNDLLLEPLIVES---------NFKL 251
           +   E+       +   + + L          L  N   L  +I ES         N+K 
Sbjct: 298 LTPDEVKSLLLKYLD-CRPQDL------PREVLTTNPRRLS-IIAESIRDGLATWDNWKH 349

Query: 252 PLM--IKRLISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNN 309
                +  +I S+++ LE        +E      F         +SVF      P S + 
Sbjct: 350 VNCDKLTTIIESSLNVLE-------PAEYR--KMF-------DRLSVF------PPSAH- 386

Query: 310 PRGLPISVDGEGL-----KKGTRAGEGALREVAAYIL--DHPRDATYSLHDEERGFAGVP 362
              +P  +    L               + ++  Y L    P+++T S+           
Sbjct: 387 ---IPTIL----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--------- 430

Query: 363 PTVMVRCLHKGFNHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLD 422
                  ++         ++ L    +    +            P+ F  D++     LD
Sbjct: 431 -------IYLELKVKLENEYALHRSIVDHYNI------------PKTFDSDDLIPPY-LD 470

Query: 423 IRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPYSPETI 482
               +   H G+ L + +   ++ L            F D  F +L   + +  +     
Sbjct: 471 QYFYS---HIGHHLKNIEHPERMTL--------FRMVFLD--FRFL---EQKIRHDSTAW 514

Query: 483 NYINA-LDAEKDIELLKFHGWDIPPECARVLR-ISTMLLKKGVDRGLTPFDIGCIMCRKT 540
           N   + L+  + ++  K +  D  P+  R++  I   L K   +   + +    ++ R  
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT--DLL-RIA 571

Query: 541 L--KDESVIEQIVREAQ 555
           L  +DE++ E+  ++ Q
Sbjct: 572 LMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 7e-06
 Identities = 66/486 (13%), Positives = 134/486 (27%), Gaps = 179/486 (36%)

Query: 147 VDLKNQELICDGEE--LEDQ--RLITDICKR---NEAVIHLLVRKSAKVRAKPVQKDFEV 199
              + ++++   E+  +++   + + D+ K     E + H+++ K A      +   F  
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWT 70

Query: 200 SIEATELNEKGADVVGEHQFETLFMGYQIRERKLLQND--LLLEPLIVESNFKLPLMIKR 257
                 L  K  ++V +      F+       ++L+ +   L+ P+  E   + P M+ R
Sbjct: 71  ------LLSKQEEMVQK------FVE------EVLRINYKFLMSPIKTEQ--RQPSMMTR 110

Query: 258 LISSTVDGLERGNEPIPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISV 317
           +     D L   N+                                  +V   R  P   
Sbjct: 111 MYIEQRDRLYNDNQVFA-----------------------------KYNV--SRLQPYLK 139

Query: 318 DGEGLKKGTRAGEGALREVAAYILDHPRDATY-SLHDEERGFAGVPPTVMVR--CLHKGF 374
               L++       AL E+        R A    +     G  G   T +    CL    
Sbjct: 140 ----LRQ-------ALLEL--------RPAKNVLID----GVLGSGKTWVALDVCLSYKV 176

Query: 375 NHPNGYKHDLENVKIGSLQMFVENVGSCEEMGPRAFPVDEVHKISVLDIRLANTDRHAGN 434
                +K            +F  N+ +C    P           +VL++ L         
Sbjct: 177 QCKMDFK------------IFWLNLKNCNS--PE----------TVLEM-LQKLLYQIDP 211

Query: 435 ILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY-----------SPETIN 483
              S+           DH   +           L      +PY           + +  N
Sbjct: 212 NWTSR----------SDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 484 Y----------------INALDAEKDIEL-LKFHGWDIPPE-----CARVLRISTMLLKK 521
                             + L A     + L  H   + P+       + L      L +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 522 GVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSE---DGFLESVASIMDRH 578
            V     P  +   +  ++++D                  T +       + + +I++  
Sbjct: 321 EVLTTN-PRRLS--IIAESIRDG---------------LATWDNWKHVNCDKLTTIIESS 362

Query: 579 LDDLTP 584
           L+ L P
Sbjct: 363 LNVLEP 368

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           IT+ T+  + F+  +E    V  +K++I  +KGR+   +  Q+LI  G+ L D   I D 
Sbjct: 8   ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67

Query: 171 CKRNEAVIHLLVRK 184
               +  + ++V K
Sbjct: 68  RIDEKNFVVVMVTK 81

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 16/77 (20%), Positives = 40/77 (51%), Gaps = 5/77 (6%)

Query: 33  SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLVFEGRELARSNSR 88
           ++ I L ++      +R+   +++  +K +I++  G     V  QKL++ G+ L+     
Sbjct: 5   AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP- 63

Query: 89  VRDYGLADGNVLHLVLR 105
           +RDY + + N + +++ 
Sbjct: 64  IRDYRIDEKNFVVVMVT 80

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 26  PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS 85
                   I + +          V ++ +I  +K  I         +  L+F G+ L + 
Sbjct: 10  APVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKIL-KD 68

Query: 86  NSRVRDYGLADGNVLHLVLRL 106
              +   G+ DG  +HLV++ 
Sbjct: 69  PDSLAQCGVRDGLTVHLVIKR 89

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  +F V     +  +K++I+++           LI  G+ L+D   +    
Sbjct: 20  VTVKTPKDK-EDFSVTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCG 76

Query: 172 KRNEAVIHLLVRKSAKVRAKPVQ 194
            R+   +HL++++  +       
Sbjct: 77  VRDGLTVHLVIKRQHRAMGNECP 99

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
              +P+ +  S++I   K ++         + KL++ G+ L  S + V + GL DG+ + 
Sbjct: 11  KEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKT-VSECGLKDGDQVV 69

Query: 102 LVLR 105
            ++ 
Sbjct: 70  FMVS 73

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 11/81 (13%), Positives = 32/81 (39%), Gaps = 2/81 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +T      +     +E    +   K ++A+      +    +LI  G+ L+D + +++  
Sbjct: 4   LTFKNFKKEKVPLDLEPSNTILETKTKLAQS--ISCEESQIKLIYSGKVLQDSKTVSECG 61

Query: 172 KRNEAVIHLLVRKSAKVRAKP 192
            ++   +  +V +    + K 
Sbjct: 62  LKDGDQVVFMVSQKKSTKTKV 82

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+ G+   + +E+G +V  +K QI++      ++    L+ +G    +  L+TD  
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQD--MGFEIDMMTLVNNGFIAPNTELVTD-- 58

Query: 172 KRNEAVIHLLVR 183
              +   +L ++
Sbjct: 59  ---DVTYYLSLK 67

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9 Length = 189

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 7/120 (5%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           + + ++ G      + +  S+  +K +I    GF +    LV  G              +
Sbjct: 3   VQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP------NTELV 56

Query: 95  ADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQEL 154
            D    +L L+L   +            +                  +    V L+ +  
Sbjct: 57  TDDVTYYLSLKLLGGKKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGC 116

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 53.7 bits (128), Expect = 6e-08
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 21  NFTHRPEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR 80
                   ++    +   ++ G  I + V  SD+I +VK +IQ   G    +Q+L+F G+
Sbjct: 222 LEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 281

Query: 81  ELARSNSR-VRDYGLADGNVLHLVLRL 106
           +L   + R + DY +   + LHLVLRL
Sbjct: 282 QL--EDGRTLSDYNIQKESTLHLVLRL 306

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-----RELARSNSRVRDYGLA 95
            G  +  ++  +    SV+L         +    ++         + A S          
Sbjct: 160 NGIKVNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHM 219

Query: 96  DGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI 155
                     ++    I V T+ GK     VE    +  VK +I  K  E +    Q LI
Sbjct: 220 VLLEFVTAAGITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLI 277

Query: 156 CDGEELEDQRLITDICKRNEAVIHLLVR 183
             G++LED R ++D   + E+ +HL++R
Sbjct: 278 FAGKQLEDGRTLSDYNIQKESTLHLVLR 305

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L      + DY +   + LH
Sbjct: 10  GKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDYNIQKESTLH 68

Query: 102 LVLR 105
           LVLR
Sbjct: 69  LVLR 72

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K     D   Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPD--QQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIH 179
            + E+ +H
Sbjct: 61  IQKESTLH 68

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 48.4 bits (115), Expect = 2e-07
 Identities = 10/66 (15%), Positives = 32/66 (48%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
                 ++V     +++ ++  +  +G   ++ ++V+  + L   +  +  YGL DG+++
Sbjct: 20  TEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMV 79

Query: 101 HLVLRL 106
            L+ + 
Sbjct: 80  VLLQKD 85

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 50.0 bits (118), Expect = 1e-06
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 1/94 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           IT+ T+  + F+  +E    V  +K++I  +KGR+   +  Q+LI  G+ L D   I D 
Sbjct: 10  ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 69

Query: 171 CKRNEAVIHLLVRKSAKVRAKPVQKDFEVSIEAT 204
               +  + ++V K+   +      +   +    
Sbjct: 70  RIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPE 103

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 18/89 (20%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 29  LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLVFEGRELAR 84
           L + ++ I L ++      +R+   +++  +K +I++  G     V  QKL++ G+ L+ 
Sbjct: 3   LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 62

Query: 85  SNSRVRDYGLADGNVLHLVLRLSDLQAIT 113
               +RDY + + N + +++  +     T
Sbjct: 63  DVP-IRDYRIDEKNFVVVMVTKTKAGQGT 90

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 26  PEKLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARS 85
              +  + + + +    +   ++V    + + +K +I S  G     QK++++G  L   
Sbjct: 10  GGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKG--LVPE 67

Query: 86  NSRVRDYGLADGNVLHLV 103
           +  +R+  +  G  + +V
Sbjct: 68  DKTLREIKVTSGAKIMVV 85

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 15/89 (16%)

Query: 35  LIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK---------------LVFEG 79
           +    + G V+P+ V+++ ++  +K  IQ Y     +++                L   G
Sbjct: 10  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69

Query: 80  RELARSNSRVRDYGLADGNVLHLVLRLSD 108
            +L     ++RDYG+ + + +  + +L  
Sbjct: 70  EKLTEDRKKLRDYGIRNRDEVSFIKKLGQ 98

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 93

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VIH 179
            E   +RG +VG++K  +++   E    ++Q LI  G+ L D + + D+  + E   V+H
Sbjct: 22  LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLH 81

Query: 180 LLVRKSA 186
           L+    +
Sbjct: 82  LVCNVKS 88

>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A* Length = 325

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 420 VLDIRLANTDRHAGNI-LVSKDEGGQIKLVPI-DHGYCLPYSFED 462
           V D  L N DRH GN   +      + ++ PI D G CL    +D
Sbjct: 146 VADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLYPQADD 190

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 48  RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105
                D++ ++K +          + KL+++GR L      +    + +  V+H    
Sbjct: 23  VARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	590
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.97
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.97
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.96
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.67
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.63
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.62
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.6
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.6
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.6
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.58
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.58
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.58
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.58
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.56
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.55
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.54
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.53
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.53
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.53
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.53
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.53
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.53
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.53
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.53
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.52
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.52
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.52
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.52
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.52
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.52
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.52
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.52
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.52
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.51
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.51
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.51
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.51
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.51
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.5
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.5
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.5
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.5
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.5
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.5
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.5
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.49
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.49
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.48
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.48
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.48
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.47
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.47
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.47
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.47
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.47
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.47
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.47
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.46
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.46
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.46
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.46
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.46
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.46
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.46
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.45
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.45
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.45
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.18
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.44
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.44
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.44
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.44
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.44
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.43
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.43
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.42
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.42
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.42
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.42
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.42
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.42
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.41
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.41
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.41
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.41
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.41
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.41
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.41
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.4
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.4
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.4
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.4
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.39
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.39
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.39
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.39
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.09
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.39
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.38
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.38
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.38
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.38
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.38
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.37
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.37
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.37
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.36
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.36
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.36
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.36
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.35
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.35
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.35
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.34
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.34
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.34
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.34
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.33
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.33
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.33
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.33
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.32
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.32
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.32
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.32
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.31
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.31
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.3
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.3
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.29
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.29
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.28
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.28
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.28
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.27
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.26
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.26
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.25
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.23
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.23
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.23
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.22
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.21
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.21
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.2
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.17
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.17
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.17
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.17
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.15
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.14
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.13
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.13
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.11
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.1
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.1
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.09
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.09
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.09
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.07
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.06
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.03
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.02
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.0
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	98.93
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.9
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.9
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	98.88
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.87
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.87
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.85
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.82
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	98.82
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.8
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.8
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.8
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.78
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.78
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.77
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.75
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.74
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.71
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.69
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.67
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.62
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.51
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.25
1cja_A	342	Protein (actin-fragmin kinase); transferase; HET:	98.13
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.11
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.09
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.02
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	97.88
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	97.79
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.7
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.69
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.59
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.57
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	97.53
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.45
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.4
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.29
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	97.22
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.15
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.12
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.05
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	96.95
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	96.92
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	96.83
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	96.78
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	96.73
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	96.47
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.32
3akj_A	325	CTKA; protein kinase, transferase; 2.00A {Helicoba	96.23
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	96.19
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	95.72
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	95.7
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	95.64
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	95.38
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	95.22
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	94.36
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	94.08
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	93.69
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	93.41
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	92.68
2x6h_A	696	GH13170P, VPS34, phosphotidylinositol 3 kinase 59F	91.36
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	90.75
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	89.67
3ls8_A	614	Phosphatidylinositol 3-kinase catalytic subunit ty	89.07
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	88.96
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	88.68
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	88.66
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	88.49
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	88.17
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	87.95
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	87.79
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	87.58
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	87.14
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	86.37
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	85.31
2ylm_A	530	Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70	84.59
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	84.54
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	84.32
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	83.28
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	82.25
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	81.29
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	81.19
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	81.05
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	80.67
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	80.38

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.97  E-value=9.1e-31  Score=249.67  Aligned_cols=152  Identities=34%  Similarity=0.528  Sum_probs=145.3

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      +...|+|+| +++|+++.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|++++.+
T Consensus        17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~g   95 (172)
T 3u30_A           17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRG   95 (172)
T ss_dssp             --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccc-ccCCHhHcCCcccceeeeeecccc
Confidence            468899999 799999999999999999999999999999999999999999997 899999999999999999999999


Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      +|+|+|++.+|+++.++|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|+++|++|+|+++++|||++|-
T Consensus        96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl  169 (172)
T 3u30_A           96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  169 (172)
T ss_dssp             CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred             cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCC--ceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence            99999999999999999999999999999999999988  999999999999999999999999999999998873

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.97  E-value=2.5e-30  Score=243.08  Aligned_cols=150  Identities=20%  Similarity=0.227  Sum_probs=144.3

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE-E-cCcccccCCccccccCcccccceeEEee-ecc
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV-F-EGRELARSNSRVRDYGLADGNVLHLVLR-LSD  108 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv-f-~Gk~L~~D~~tL~dygI~~gstL~Lvlr-Lsd  108 (590)
                      .|+|+| +++|++++++|++++||.+||.+|+.+.|+|+++|+|+ | +|+.|. |+.+|++|+|++|++|||+++ +++
T Consensus         2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~-d~~tL~~y~i~~~~~l~l~~~~~~~   80 (159)
T 3rt3_B            2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDKSDE   80 (159)
T ss_dssp             -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-TTSCGGGGTCCTTCEEEEEECCCCC
T ss_pred             ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCC-CCCCHHHcCCCCCCEEEEEccCCCC
Confidence            489999 79999999999999999999999999999999999999 9 799997 999999999999999999999 699


Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .|+|+|++.+|+++.++|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus        81 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~  155 (159)
T 3rt3_B           81 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR  155 (159)
T ss_dssp             CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC--HHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence            99999999999999999999999999999999999988  9999999999999999999999999999999998843

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.96  E-value=2.3e-28  Score=226.43  Aligned_cols=149  Identities=34%  Similarity=0.537  Sum_probs=144.5

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI  112 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~I  112 (590)
                      |+|+| +.+|++++++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++++++|++.+..++|+|
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~i~~~~~l~l~~~~~~~~~i   79 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGMQI   79 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCTTCEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECc-CcccHHHhccCCCCeeEEEeecccccce
Confidence            89999 789999999999999999999999999999999999999999997 8999999999999999999999999999


Q ss_pred             eeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          113 TVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       113 ~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +|++.+|+.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus        80 ~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~  150 (152)
T 3b08_A           80 FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  150 (152)
T ss_dssp             EEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred             eeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            9999999999999999999999999999999988  9999999999999999999999999999999998754

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.5e-17  Score=148.73  Aligned_cols=103  Identities=30%  Similarity=0.488  Sum_probs=98.2

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ....+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|++++.++
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            46789999 899999999999999999999999999999999999999999997 8999999999999999999999999


Q ss_pred             ccceee---eccceeeEEEeecCCcHHH
Q 007773          110 QAITVT---TVCGKVFEFHVERGRNVGY  134 (590)
Q Consensus       110 m~I~Vk---t~~Gk~~~i~Vd~s~TV~~  134 (590)
                      +.++++   +.+|++++++|++++||+.
T Consensus        86 ~~~~~~~~~~~~g~~~~~~v~~~~~~~~  113 (114)
T 2kdi_A           86 SMGGAADEEELIRKAIELSLKESRNSGG  113 (114)
T ss_dssp             CCCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred             ceeeccccccccCceEEEEeccccccCC
Confidence            999999   7889999999999999863

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.63  E-value=6.1e-16  Score=131.03  Aligned_cols=88  Identities=25%  Similarity=0.282  Sum_probs=71.8

Q ss_pred             CcccccceeEEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC
Q 007773           93 GLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK  172 (590)
Q Consensus        93 gI~~gstL~LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I  172 (590)
                      |..++++++++++.+..|+|+||+.+|+.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+.+|++|++
T Consensus         1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i   78 (88)
T 4eew_A            1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV   78 (88)
T ss_dssp             --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC
T ss_pred             CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCcHHHcCC
Confidence            345688999999999999999999999999999999999999999999999988  999999999999999999999999


Q ss_pred             CCCCEEEEEee
Q 007773          173 RNEAVIHLLVR  183 (590)
Q Consensus       173 ~~gsvI~L~vr  183 (590)
                       +|++|||++|
T Consensus        79 -~g~~i~lv~R   88 (88)
T 4eew_A           79 -GGKVIHLVER   88 (88)
T ss_dssp             -TTEEEEEEEC
T ss_pred             -CCcEEEEEEC
Confidence             8999999876

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.62  E-value=9.3e-16  Score=127.18  Aligned_cols=77  Identities=22%  Similarity=0.366  Sum_probs=72.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      +..|+|+| +++|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++++.|
T Consensus         2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~l~l~~rl~G   79 (79)
T 3phx_B            2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRG   79 (79)
T ss_dssp             -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCBC
T ss_pred             CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence            36799999 789999999999999999999999999999999999999999997 899999999999999999999864

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.60  E-value=1.8e-15  Score=130.95  Aligned_cols=91  Identities=31%  Similarity=0.509  Sum_probs=72.8

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI  112 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~I  112 (590)
                      |+|+| +.+|+++.++|++++||.+||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||++|++|+|++++.++.++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~gG~~i   79 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGRDP   79 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCCC---
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCCCCCcC
Confidence            89999 778999999999999999999999999999999999999999997 8999999999999999999999999999


Q ss_pred             eeeeccceeeEEE
Q 007773          113 TVTTVCGKVFEFH  125 (590)
Q Consensus       113 ~Vkt~~Gk~~~i~  125 (590)
                      +.+|.+|+.-.++
T Consensus        80 ~~~~v~~~~~~~~   92 (98)
T 1yx5_B           80 NSSSVDKLAAALE   92 (98)
T ss_dssp             -------------
T ss_pred             ccccCCCchhhhh
Confidence            9999998776554

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.60  E-value=2.1e-15  Score=129.73  Aligned_cols=78  Identities=21%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             EEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          102 LVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       102 LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      |+...+..|+|+||+.+|+++.++|++++||.+||++|+++.|+|  +++|+|+|+|++|+|..+|+||+|++|++|+|.
T Consensus        14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC--HHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence            455566779999999999999999999999999999999999998  999999999999999999999999999999985

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.60  E-value=2.2e-15  Score=127.04  Aligned_cols=82  Identities=29%  Similarity=0.526  Sum_probs=76.3

Q ss_pred             CCCCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        27 ~~~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ++.+..+|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+|+|+++++|||+++
T Consensus         6 ~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r   84 (88)
T 3dbh_I            6 SVGSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLR   84 (88)
T ss_dssp             CSSCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBGGGGTCCTTCEEEECCC
T ss_pred             CCCCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEe
Confidence            333578899999 689999999999999999999999999999999999999999997 899999999999999999999


Q ss_pred             eccc
Q 007773          106 LSDL  109 (590)
Q Consensus       106 Lsd~  109 (590)
                      +.++
T Consensus        85 l~GG   88 (88)
T 3dbh_I           85 LRGG   88 (88)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8864

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.58  E-value=2.5e-15  Score=129.29  Aligned_cols=72  Identities=21%  Similarity=0.239  Sum_probs=68.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      ..-|+|+| ++.|++++++|+|+|||.+||++|++++|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|.
T Consensus        19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~Lk-D~~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEE
T ss_pred             CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEcc-CcCCHHHcCCCCCCEEEEE
Confidence            56799999 789999999999999999999999999999999999999999998 8999999999999999986

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.58  E-value=4.3e-15  Score=126.90  Aligned_cols=77  Identities=36%  Similarity=0.638  Sum_probs=73.2

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      +...|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++|++
T Consensus        14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~rlr   91 (91)
T 3v6c_B           14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR   91 (91)
T ss_dssp             CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBTGGGTCCTTCEEEEECCCC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECC-CcCcHHHCCCCCCCEEEEEEecC
Confidence            468899999 789999999999999999999999999999999999999999997 89999999999999999999874

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.58  E-value=5.5e-15  Score=122.52  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=72.1

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|+|+||+.+|+++.++|++++||.+||++|+++.|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|||++|-
T Consensus         3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl   77 (79)
T 3phx_B            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL   77 (79)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC--HHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            469999999999999999999999999999999999998  999999999999999999999999999999999873

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.58  E-value=3.3e-15  Score=127.12  Aligned_cols=77  Identities=27%  Similarity=0.539  Sum_probs=71.2

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA  111 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~  111 (590)
                      |+|+| +++|++++++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|+|++++.++..
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~l~l~~rl~Gg~~   78 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGGGG   78 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECBCC----
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence            79999 789999999999999999999999999999999999999999997 899999999999999999999998753

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=5.8e-15  Score=128.08  Aligned_cols=79  Identities=34%  Similarity=0.594  Sum_probs=73.3

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      .+..|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.+
T Consensus        19 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~rl~G   97 (98)
T 4hcn_B           19 QGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRG   97 (98)
T ss_dssp             ---CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTCBSGGGTCCTTEEEEEECBCSC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCC
Confidence            478899999 789999999999999999999999999999999999999999997 899999999999999999999887


Q ss_pred             c
Q 007773          109 L  109 (590)
Q Consensus       109 ~  109 (590)
                      +
T Consensus        98 G   98 (98)
T 4hcn_B           98 G   98 (98)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.55  E-value=6.7e-15  Score=121.97  Aligned_cols=77  Identities=17%  Similarity=0.305  Sum_probs=72.8

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      +.|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|++++++.|+
T Consensus         2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~-d~~tl~~~~i~~~~~i~l~~~~~GG   79 (79)
T 2uyz_B            2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG   79 (79)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence            4699999 789999999999999999999999999999999999999999998 8999999999999999999998764

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.54  E-value=1.4e-14  Score=119.53  Aligned_cols=76  Identities=26%  Similarity=0.253  Sum_probs=71.4

Q ss_pred             ccccceeeeccceee-EEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVF-EFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~-~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |.|+|+|++.+|+++ .++ |++++||.+||++|+++.|++  +++|+|+|+|+.|+|+++|++|+++++++|||++|.+
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip--~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~   78 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   78 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            469999999999985 999 999999999999999999988  9999999999999999999999999999999998754

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.53  E-value=1.9e-14  Score=122.24  Aligned_cols=77  Identities=23%  Similarity=0.423  Sum_probs=72.2

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      +..|+|+| +++|+++.++|.+++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|.+|+| +|++|||+++.+..
T Consensus         3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~~~i-~g~~i~l~~~~~~~   80 (90)
T 4dwf_A            3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERAPPQ   80 (90)
T ss_dssp             CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred             CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECC-CCCCHHHcCC-CCcEEEEEecCCCC
Confidence            46899999 889999999999999999999999999999999999999999997 8999999999 89999999987653

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.53  E-value=1.4e-14  Score=122.50  Aligned_cols=74  Identities=20%  Similarity=0.310  Sum_probs=70.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc-cccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-LARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ..-|+|+| +++|++++++|++++||++||.+|++++|+|+++|+|+|+|+. |. |+.+|++|||++|++|+|+++
T Consensus         8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~-D~~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A            8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILR-EDLTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCC-SSSBHHHHTCCTTSCEEEEEC
T ss_pred             cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecC-CcCCHHHcCCCCCCEEEEEEc
Confidence            46799999 8999999999999999999999999999999999999999999 97 899999999999999999875

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.53  E-value=2.4e-14  Score=120.63  Aligned_cols=79  Identities=23%  Similarity=0.339  Sum_probs=75.0

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus         5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~~~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A            5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred             CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEcc-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence            47899999 788999999999999999999999999999999999999999997 8999999999999999999999876


Q ss_pred             c
Q 007773          110 Q  110 (590)
Q Consensus       110 m  110 (590)
                      .
T Consensus        84 ~   84 (87)
T 1wh3_A           84 P   84 (87)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.53  E-value=2.1e-14  Score=122.01  Aligned_cols=79  Identities=27%  Similarity=0.293  Sum_probs=72.3

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k  187 (590)
                      ..|+|+||+.+|+++.++|++++||.+||++|+++.+++  +++|+|+|+|+.|+|+++|++|+| ++++|||+++.+..
T Consensus         4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~   80 (90)
T 4dwf_A            4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ   80 (90)
T ss_dssp             CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred             cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence            458999999999999999999999999999999999988  999999999999999999999999 89999999986654


Q ss_pred             cc
Q 007773          188 VR  189 (590)
Q Consensus       188 v~  189 (590)
                      .+
T Consensus        81 ~~   82 (90)
T 4dwf_A           81 TH   82 (90)
T ss_dssp             --
T ss_pred             CC
Confidence            33

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.53  E-value=1.7e-14  Score=117.65  Aligned_cols=75  Identities=28%  Similarity=0.556  Sum_probs=70.2

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|++++++.|+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMN-DEKTAADYKILGGSVLHLVLALRGG   76 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            78999 678999999999999999999999999999999999999999997 8999999999999999999998764

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.7e-14  Score=118.28  Aligned_cols=76  Identities=22%  Similarity=0.453  Sum_probs=72.1

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      +...|+|+| +.+|+++.++|.+++||++||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++||+++++
T Consensus         4 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            4 GSSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALA-DGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             SSSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECC-TTSBGGGGTCCSSBCCEEECCC
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence            467899999 788999999999999999999999999999999999999999997 8999999999999999999876

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.53  E-value=1.9e-14  Score=118.78  Aligned_cols=75  Identities=17%  Similarity=0.327  Sum_probs=69.9

Q ss_pred             CCEEEEE-EeCCeEE-EEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           32 DSILIFL-SVGGSVI-PMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~-~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      +.|+|+| +++|+++ .++ |++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++++
T Consensus         1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~-d~~tL~~~~i~~g~~i~l~~r~~   78 (78)
T 2faz_A            1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS   78 (78)
T ss_dssp             -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence            3699999 7889885 999 99999999999999999999999999999999997 89999999999999999998863

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.53  E-value=2.6e-14  Score=123.43  Aligned_cols=81  Identities=17%  Similarity=0.301  Sum_probs=74.4

Q ss_pred             CCCCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCC-ccccccCcccccceeEEe
Q 007773           27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        27 ~~~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstL~Lvl  104 (590)
                      ++.+...|+|+| +++| ++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+ .+|++|||+++++|+|++
T Consensus         9 ~~~~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~~tL~~ygI~~gstl~lv~   86 (94)
T 2kan_A            9 SHAAVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELA-DDYRNLNEYGITEFSEIVVFL   86 (94)
T ss_dssp             SCSSSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEEC-CTTSBHHHHTCCTTEEEEEEE
T ss_pred             cccCCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECC-CCcccHHHCCCCCCCEEEEEE
Confidence            344578899999 6666 8999999999999999999999999999999999999997 77 999999999999999999


Q ss_pred             eeccc
Q 007773          105 RLSDL  109 (590)
Q Consensus       105 rLsd~  109 (590)
                      +++++
T Consensus        87 r~~gg   91 (94)
T 2kan_A           87 KSINR   91 (94)
T ss_dssp             CCCSS
T ss_pred             eCCCC
Confidence            98875

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.52  E-value=1.7e-14  Score=122.01  Aligned_cols=74  Identities=24%  Similarity=0.259  Sum_probs=71.0

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE-cCCCCcccccCCCCCCEEEEEeec
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~-LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      -|.|+|++.+|+++.++|++++||.+||++|+++.|++  +++|+|+|+|+. |+|+++|++|+|+++++|+|++++
T Consensus        10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p   84 (84)
T 2kk8_A           10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP--VSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS   84 (84)
T ss_dssp             CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred             ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence            48999999999999999999999999999999999988  999999999999 999999999999999999998763

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.52  E-value=1.4e-14  Score=125.53  Aligned_cols=78  Identities=17%  Similarity=0.302  Sum_probs=74.3

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.|+
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~-d~~tl~dy~i~~g~~I~l~~~~~GG   97 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQTGG   97 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcC-CCCCHHHCCCCCCCEEEEEEecCCC
Confidence            56799999 789999999999999999999999999999999999999999997 8999999999999999999998764

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=1.4e-14  Score=121.09  Aligned_cols=77  Identities=30%  Similarity=0.506  Sum_probs=70.9

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ..|+|+| +++|+++.++|++++||.+||.+|+++.++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B            2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECC-TTCBTTTTTCCTTCEEEEEECCC--
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence            4799999 688999999999999999999999999999999999999999997 8999999999999999999999765

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=3.5e-14  Score=120.24  Aligned_cols=79  Identities=16%  Similarity=0.341  Sum_probs=74.2

Q ss_pred             CCCEEEEE-EeCC-eEEEE-EecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           31 NDSILIFL-SVGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        31 ~~sM~I~V-tl~G-~t~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      ...|+|+| +++| +++.+ +|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.
T Consensus         5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~~~   83 (89)
T 1wy8_A            5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRPD   83 (89)
T ss_dssp             SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECCC
T ss_pred             CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECC-CCCCHHHCCCCCCCEEEEEEeCC
Confidence            57899999 7888 79999 599999999999999999999999999999999997 89999999999999999999998


Q ss_pred             ccc
Q 007773          108 DLQ  110 (590)
Q Consensus       108 d~m  110 (590)
                      ++.
T Consensus        84 gG~   86 (89)
T 1wy8_A           84 SGP   86 (89)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            763

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.52  E-value=1.3e-14  Score=123.34  Aligned_cols=78  Identities=22%  Similarity=0.342  Sum_probs=71.0

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      +..|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++
T Consensus         2 ~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~~I~~g~~i~l~~~~~gg   80 (88)
T 2hj8_A            2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG   80 (88)
T ss_dssp             CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCC-TTSBHHHHHCSTTCEEEEEEC----
T ss_pred             CccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            46799999 788999999999999999999999999999999999999999997 8999999999999999999998765

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.52  E-value=1.7e-14  Score=126.12  Aligned_cols=73  Identities=21%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ...|+|+| ++.|++++++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|.+|+|+++++|||+.
T Consensus        26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~-D~~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEe
Confidence            34599999 788999999999999999999999999999999999999999997 89999999999999999864

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.52  E-value=2.4e-14  Score=119.56  Aligned_cols=77  Identities=32%  Similarity=0.563  Sum_probs=72.9

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ..|+|+| +++|+++.++|++++||.+||.+|+++.++|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.++
T Consensus         2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~l~l~~r~~GG   79 (85)
T 3mtn_B            2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKWSTLFLLLRLRGG   79 (85)
T ss_dssp             -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred             CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEECcCC
Confidence            5799999 788999999999999999999999999999999999999999998 8999999999999999999998765

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.52  E-value=2.4e-14  Score=121.76  Aligned_cols=74  Identities=26%  Similarity=0.380  Sum_probs=71.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+++.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~   74 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALR   74 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence            7899999999999999999999999999999999988  9999999999999999999999999999999998843

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.8e-14  Score=127.07  Aligned_cols=79  Identities=13%  Similarity=0.197  Sum_probs=70.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCCcc
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKVR  189 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~kv~  189 (590)
                      |+|+||+.+|+.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++...+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~~   79 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE--ESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKSTK   79 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC--GGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-----
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCCC
Confidence            7899999999999999999999999999999999988  99999999999999999999999999999999999776544


Q ss_pred             C
Q 007773          190 A  190 (590)
Q Consensus       190 ~  190 (590)
                      +
T Consensus        80 ~   80 (106)
T 3m62_B           80 T   80 (106)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.51  E-value=3.1e-14  Score=122.30  Aligned_cols=79  Identities=34%  Similarity=0.623  Sum_probs=72.1

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccccc
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA  111 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~  111 (590)
                      .|+|+| +++|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++..
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~-d~~tL~~~~i~~~~~i~l~~r~~gG~~   79 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGYAD   79 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC---
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEEcCCCCc
Confidence            389999 789999999999999999999999999999999999999999997 899999999999999999999998865


Q ss_pred             c
Q 007773          112 I  112 (590)
Q Consensus       112 I  112 (590)
                      .
T Consensus        80 ~   80 (96)
T 3k9o_B           80 L   80 (96)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=120.05  Aligned_cols=73  Identities=25%  Similarity=0.460  Sum_probs=69.5

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      +..|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+||| +|++|||++|
T Consensus        15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i-~g~~i~lv~R   88 (88)
T 4eew_A           15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVER   88 (88)
T ss_dssp             CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTC-TTEEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CCCcHHHcCC-CCcEEEEEEC
Confidence            56799999 789999999999999999999999999999999999999999998 8999999999 8999999875

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.51  E-value=3e-14  Score=135.82  Aligned_cols=83  Identities=35%  Similarity=0.578  Sum_probs=76.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQAI  112 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~I  112 (590)
                      |+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++++++...
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~gstI~Lvlrl~GG~k~   79 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGGE   79 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCCC---C
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCcccc-CcCcHHHcCCCCCCEEEEEEEecccccc
Confidence            89999 889999999999999999999999999999999999999999997 8999999999999999999999998877


Q ss_pred             eeeec
Q 007773          113 TVTTV  117 (590)
Q Consensus       113 ~Vkt~  117 (590)
                      .|+..
T Consensus        80 ~vkfs   84 (169)
T 3l0w_B           80 TIKFV   84 (169)
T ss_dssp             CEEEE
T ss_pred             ccccc
Confidence            77653

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.51  E-value=3.8e-14  Score=115.52  Aligned_cols=75  Identities=36%  Similarity=0.621  Sum_probs=71.5

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||.+|++|++++++.|+
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~tL~~~~i~~g~~i~l~~~~~GG   76 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQRESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            79999 778999999999999999999999999999999999999999997 8999999999999999999998764

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.51  E-value=5.3e-14  Score=117.89  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHh---cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~---~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      +..|+|+|++.+|+.+.++|++++||.+||++|+..   .|++  +++|+|+|+|+.|+|+++|++|+++++++|+|+++
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCC--GGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCC--HHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence            456999999999999999999999999999999998   7887  99999999999999999999999999999999987


Q ss_pred             cC
Q 007773          184 KS  185 (590)
Q Consensus       184 ks  185 (590)
                      ++
T Consensus        81 ~~   82 (85)
T 2wyq_A           81 KT   82 (85)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.50  E-value=2e-14  Score=122.69  Aligned_cols=74  Identities=14%  Similarity=0.324  Sum_probs=69.6

Q ss_pred             ccceeeeccceeeEEEee--cCCcHHHHHHHH-HHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVE--RGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd--~s~TV~~LK~kI-~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-~~gsvI~L~vrks  185 (590)
                      |+|+|||.+|++++++|+  +++||.+||++| +.+.|+|  +++|+|+|+|+.|+|+.+|++|+| +++++|++++++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~   79 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN   79 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSS--STTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCC--hHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence            899999999999999877  999999999999 9999988  999999999999999999999999 7999999988754

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.50  E-value=3.5e-14  Score=120.77  Aligned_cols=77  Identities=30%  Similarity=0.582  Sum_probs=68.7

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ..|+|+| +++|+++.++|++++||++||.+|+++.|+|++.|+|+|+|+.|. |+.+|++|||+++++|+|++++.++
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBSGGGTCCTTCEEEEEC-----
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            4699999 899999999999999999999999999999999999999999997 8999999999999999999998875

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.50  E-value=8.9e-14  Score=119.89  Aligned_cols=78  Identities=19%  Similarity=0.310  Sum_probs=72.5

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHh---cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKK---GREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~---~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      |+|+|++.+|+.+.++|++++||.+||++|+..   .|++  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++++.
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~   78 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFP--VAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK   78 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCC--TTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence            789999999999999999999999999999999   7787  99999999999999999999999999999999998665


Q ss_pred             Ccc
Q 007773          187 KVR  189 (590)
Q Consensus       187 kv~  189 (590)
                      ..+
T Consensus        79 ~~~   81 (95)
T 1uel_A           79 AVS   81 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.50  E-value=4.2e-14  Score=123.32  Aligned_cols=77  Identities=13%  Similarity=0.308  Sum_probs=70.0

Q ss_pred             cccccceeeeccceeeEEE--eecCCcHHHHHHHH-HHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEe
Q 007773          107 SDLQAITVTTVCGKVFEFH--VERGRNVGYVKQQI-AKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLV  182 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~--Vd~s~TV~~LK~kI-~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-~~gsvI~L~v  182 (590)
                      ...|+|+|||.+|++|+++  |++++||.+||++| ++..|++  +++|+|+|+|+.|+|..+|++|+| +++++|+|++
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv   94 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASH--ISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI   94 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSC--GGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCC--hhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence            4569999999999988875  55999999999999 8888887  999999999999999999999999 9999999999


Q ss_pred             ecC
Q 007773          183 RKS  185 (590)
Q Consensus       183 rks  185 (590)
                      +++
T Consensus        95 skp   97 (98)
T 4a20_A           95 KPN   97 (98)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            875

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.50  E-value=2.8e-14  Score=122.77  Aligned_cols=78  Identities=17%  Similarity=0.310  Sum_probs=70.7

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ....|+|+|+. |+++.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|+|++++.|+
T Consensus        16 ~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~gstI~lv~rl~GG   93 (93)
T 2l7r_A           16 PRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLE-DEATLGQCGVEALTTLEVAGRMLGG   93 (93)
T ss_dssp             ----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECC-TTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred             CCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence            36779999955 899999999999999999999999999999999999999997 8999999999999999999998874

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.50  E-value=2.6e-14  Score=124.90  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=68.8

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      .|+|+||+.+|+++.++|++++||.+||++|+++.|++  +++|+|+|+|++|+|+.+|++|+|+++++|+|+
T Consensus        28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip--~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC--HHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence            38999999999999999999999999999999999998  999999999999999999999999999999986

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.50  E-value=5e-14  Score=120.26  Aligned_cols=75  Identities=31%  Similarity=0.421  Sum_probs=71.7

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      ...|+|+||+.+|+++.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|+|++|++|+|++|
T Consensus        15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r   89 (91)
T 3v6c_B           15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   89 (91)
T ss_dssp             CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence            3459999999999999999999999999999999999988  99999999999999999999999999999999987

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=1.9e-14  Score=126.90  Aligned_cols=79  Identities=20%  Similarity=0.449  Sum_probs=72.9

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc---------------ceEEEEcCcccccCCccccccCc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK---------------KQKLVFEGRELARSNSRVRDYGL   94 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~---------------~QrLvf~Gk~L~~D~~tL~dygI   94 (590)
                      ...|+|+| +++|++++++|.+++||++||++|+++.|+|+.               +|+|+|+|+.|.+|+.+|++|||
T Consensus         5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI   84 (105)
T 1v2y_A            5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence            46699999 899999999999999999999999999999873               57999999999757799999999


Q ss_pred             ccccceeEEeeeccc
Q 007773           95 ADGNVLHLVLRLSDL  109 (590)
Q Consensus        95 ~~gstL~LvlrLsd~  109 (590)
                      ++|++||+++++++.
T Consensus        85 ~~g~~l~lv~~lr~~   99 (105)
T 1v2y_A           85 RNRDEVSFIKKLGQK   99 (105)
T ss_dssp             CSSEEEEEEECSCSC
T ss_pred             CCCCEEEEEehhccC
Confidence            999999999999764

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.49  E-value=5.1e-14  Score=116.64  Aligned_cols=75  Identities=12%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .|+|+|++.+|+++.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|++++++|+++++++|+++++..
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~--~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~   77 (79)
T 2uyz_B            3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   77 (79)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence            48899999999999999999999999999999999998  9999999999999999999999999999999998743

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.48  E-value=6.8e-14  Score=124.30  Aligned_cols=78  Identities=35%  Similarity=0.576  Sum_probs=73.5

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+.+|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus        33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 3vdz_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECC-CCCcHHHCCCCCCCEEEEEEecCCC
Confidence            45799999 689999999999999999999999999999999999999999998 8999999999999999999998864

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.48  E-value=3.6e-14  Score=137.52  Aligned_cols=82  Identities=33%  Similarity=0.529  Sum_probs=79.2

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccccc
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQA  111 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m~  111 (590)
                      .|+|+| +++|++++++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.++..
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~LvlrlrGG~~  183 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGGQ  183 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTCBGGGGTCCTTCEEEECCCCCCCCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECC-CCCCHHHCCCCCCCEEEEEEEcCCCCc
Confidence            499999 789999999999999999999999999999999999999999998 899999999999999999999999999


Q ss_pred             ceee
Q 007773          112 ITVT  115 (590)
Q Consensus       112 I~Vk  115 (590)
                      ++||
T Consensus       184 ~fvk  187 (189)
T 3q3f_A          184 TFTK  187 (189)
T ss_dssp             CCCC
T ss_pred             ceEe
Confidence            9986

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.48  E-value=1.1e-13  Score=116.45  Aligned_cols=75  Identities=19%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+++++++|+|+++.
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (87)
T 1wh3_A            6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK   80 (87)
T ss_dssp             SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC--hHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence            469999999999999999999999999999999999988  999999999999999999999999999999999883

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.47  E-value=1.2e-13  Score=112.49  Aligned_cols=73  Identities=26%  Similarity=0.386  Sum_probs=70.2

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+++++++|++++|.
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~   73 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL   73 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            7899999999999999999999999999999999988  999999999999999999999999999999999874

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.47  E-value=1.1e-13  Score=118.77  Aligned_cols=77  Identities=31%  Similarity=0.404  Sum_probs=71.9

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k  187 (590)
                      +|+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..+.
T Consensus         1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG   77 (96)
T 3k9o_B            1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGY   77 (96)
T ss_dssp             -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence            48999999999999999999999999999999999988  999999999999999999999999999999999885443

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.47  E-value=2.3e-14  Score=125.37  Aligned_cols=94  Identities=20%  Similarity=0.264  Sum_probs=67.7

Q ss_pred             CccccccCcccccceeEEeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCC
Q 007773           86 NSRVRDYGLADGNVLHLVLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQR  165 (590)
Q Consensus        86 ~~tL~dygI~~gstL~LvlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~  165 (590)
                      ...+++|.|  ++|.++.++-.-.+.|+|++ +|+.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+.
T Consensus         7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~   81 (101)
T 3m63_B            7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQ   81 (101)
T ss_dssp             ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC--STTCCEEETTEECCTTS
T ss_pred             cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCcC
Confidence            356778887  56666666555456777887 89999999999999999999999999988  99999999999999999


Q ss_pred             cccccCCCCCCEEEEEeec
Q 007773          166 LITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       166 tL~dy~I~~gsvI~L~vrk  184 (590)
                      +|++|+|++|++|+|+.+.
T Consensus        82 tL~~~gI~~g~tI~lv~~~  100 (101)
T 3m63_B           82 TVESYHIQDGHSVHLVKSQ  100 (101)
T ss_dssp             BTTTTTCCTTEEEEECCCC
T ss_pred             cHHHCCCCCCCEEEEEeCC
Confidence            9999999999999998764

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.47  E-value=1.6e-13  Score=123.15  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=70.7

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHH------hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC--CEE
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNE--AVI  178 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~------~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~g--svI  178 (590)
                      .+.|.|+|||.+|++++++|++++||.+||++|+.      +++++.|+++|+|+|.|+.|+|+++|++|+|+.+  ++|
T Consensus        14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl   93 (116)
T 1wgh_A           14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM   93 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence            35699999999999999999999999999999999      5676556999999999999999999999998765  689


Q ss_pred             EEEeecC
Q 007773          179 HLLVRKS  185 (590)
Q Consensus       179 ~L~vrks  185 (590)
                      ||++|..
T Consensus        94 hLvlr~~  100 (116)
T 1wgh_A           94 HLVARET  100 (116)
T ss_dssp             EEEECSS
T ss_pred             EEEccCC
Confidence            9998754

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.47  E-value=8.8e-14  Score=120.54  Aligned_cols=77  Identities=12%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +..|+|+|++.+|+++.++|++++||.+||++|+.+.|++  +++|+|+|+|+.|+|+++|++|+|+++++|+|+++..
T Consensus        19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip--~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~   95 (97)
T 1wyw_B           19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   95 (97)
T ss_dssp             CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--hhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence            4569999999999999999999999999999999999998  9999999999999999999999999999999998743

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.47  E-value=6.8e-14  Score=117.81  Aligned_cols=75  Identities=27%  Similarity=0.391  Sum_probs=71.6

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus        11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl   85 (88)
T 3dbh_I           11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP--PQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL   85 (88)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred             CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            458999999999999999999999999999999999988  999999999999999999999999999999998874

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.47  E-value=6.5e-14  Score=119.00  Aligned_cols=76  Identities=20%  Similarity=0.168  Sum_probs=71.3

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ..|+|+|++.+|+.+.++|++++||.+||++|+...|++  +++|+|+|+|+.|+|+++|++|+|+++++|+|+++..
T Consensus         3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~   78 (88)
T 2hj8_A            3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR   78 (88)
T ss_dssp             CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC--TTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC--
T ss_pred             ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcC
Confidence            458999999999999999999999999999999999988  9999999999999999999999999999999998754

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.46  E-value=1.7e-13  Score=114.73  Aligned_cols=76  Identities=21%  Similarity=0.432  Sum_probs=69.6

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHh---hCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      +..|+|+| +++|+++.++|++++||.+||.+|+.+   .|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++.
T Consensus         3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~i~~g~~i~l~~~~   81 (85)
T 2wyq_A            3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMVTK   81 (85)
T ss_dssp             -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECC-TTSBGGGGCCCTTSEEEEEEC-
T ss_pred             CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECc-CCCCHHHcCCCCCCEEEEEEcC
Confidence            36799999 788999999999999999999999998   899999999999999997 8999999999999999998764


Q ss_pred             c
Q 007773          107 S  107 (590)
Q Consensus       107 s  107 (590)
                      +
T Consensus        82 ~   82 (85)
T 2wyq_A           82 T   82 (85)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.46  E-value=1.2e-13  Score=129.14  Aligned_cols=79  Identities=22%  Similarity=0.334  Sum_probs=73.3

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ++.|+|+| +++|++++++|++++||++||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++++|+
T Consensus        79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~-d~~tL~~y~i~~g~~l~l~~rl~GG  157 (159)
T 3rt3_B           79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRLRGG  157 (159)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECCC--
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            46799999 789999999999999999999999999999999999999999998 8999999999999999999999876


Q ss_pred             c
Q 007773          110 Q  110 (590)
Q Consensus       110 m  110 (590)
                      -
T Consensus       158 ~  158 (159)
T 3rt3_B          158 G  158 (159)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.46  E-value=1.5e-13  Score=114.82  Aligned_cols=75  Identities=29%  Similarity=0.385  Sum_probs=71.1

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .|+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|..
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~   77 (85)
T 3n3k_B            3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLR   77 (85)
T ss_dssp             -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC--HHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEecc
Confidence            48999999999999999999999999999999999988  9999999999999999999999999999999998843

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.46  E-value=4.6e-14  Score=120.46  Aligned_cols=72  Identities=15%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             EEEEE-EeCCeEEEEEec--CCCCHHHHHHHH-HHhhCCCccceEEEEcCcccccCCccccccCc-ccccceeEEeee
Q 007773           34 ILIFL-SVGGSVIPMRVM--ESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~--~sdTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstL~LvlrL  106 (590)
                      |+|+| +++|++++++|+  +++||.+||.+| +.+.|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|.++.
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECC-TTCBHHHHCCCGGGCEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECc-CcCCHHHcCCCCCCCEEEEEcCC
Confidence            89999 899998988866  999999999999 999999999999999999998 8999999999 799999998764

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.46  E-value=2.2e-13  Score=111.03  Aligned_cols=74  Identities=32%  Similarity=0.445  Sum_probs=70.6

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+.+.++|+++.||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+++++++|+++++..
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~--~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~   74 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLR   74 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            7899999999999999999999999999999999988  9999999999999999999999999999999998743

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.46  E-value=1.3e-13  Score=117.17  Aligned_cols=76  Identities=28%  Similarity=0.414  Sum_probs=69.7

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .+|+|+|++.+|+++.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+++++++|+|+++..
T Consensus         8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~   83 (88)
T 1sif_A            8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   83 (88)
T ss_dssp             --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred             cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            369999999999999999999999999999999999988  9999999999999999999999999999999998743

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.46  E-value=4.1e-13  Score=121.91  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| ++ |+++.++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|.+|||++|++|+|++++.++
T Consensus        30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstI~lv~~~~gg  107 (125)
T 1j8c_A           30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIKRDPN  107 (125)
T ss_dssp             CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC----
T ss_pred             CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCCC
Confidence            46799999 55 899999999999999999999999999999999999999997 8999999999999999999998765

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.45  E-value=2.6e-13  Score=114.85  Aligned_cols=77  Identities=23%  Similarity=0.233  Sum_probs=72.0

Q ss_pred             ccccceeeeccc-eeeEE-EeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~G-k~~~i-~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ..|+|+|++.+| +.+.+ +|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|.+|+|+++++|||+++..
T Consensus         6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~   83 (89)
T 1wy8_A            6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPD   83 (89)
T ss_dssp             SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCC
T ss_pred             CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC--hhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCC
Confidence            459999999999 79999 5999999999999999999988  9999999999999999999999999999999998854


Q ss_pred             C
Q 007773          186 A  186 (590)
Q Consensus       186 ~  186 (590)
                      .
T Consensus        84 g   84 (89)
T 1wy8_A           84 S   84 (89)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.45  E-value=1.4e-13  Score=120.00  Aligned_cols=75  Identities=16%  Similarity=0.317  Sum_probs=68.4

Q ss_pred             CCCEEEEE-EeCCeEEEE--EecCCCCHHHHHHHH-HHhhCCCccceEEEEcCcccccCCccccccCc-ccccceeEEee
Q 007773           31 NDSILIFL-SVGGSVIPM--RVMESDSIASVKLRI-QSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l--~V~~sdTV~~LK~kI-q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstL~Lvlr  105 (590)
                      .++|+|+| +++|+++++  +|.+++||.+||.+| +.+.|+|+++|+|+|+|+.|. |+.+|++|+| ++|++|+|+++
T Consensus        17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~-D~~tL~dy~I~~~g~ti~lmvs   95 (98)
T 4a20_A           17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLH-DNLFLSDLKVTPANSTITVMIK   95 (98)
T ss_dssp             -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEEC-TTCBGGGSCCBTTBCEEEEEEC
T ss_pred             CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECc-CcCCHHHcCcCCCCCEEEEEEe
Confidence            67899999 889987776  566999999999999 888999999999999999998 8999999999 99999999886


Q ss_pred             e
Q 007773          106 L  106 (590)
Q Consensus       106 L  106 (590)
                      -
T Consensus        96 k   96 (98)
T 4a20_A           96 P   96 (98)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.7e-13  Score=113.46  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=71.2

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|+|+|++.+|+.+.++|+++.||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|++++|++|+++++.
T Consensus         6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   80 (81)
T 2dzi_A            6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP--VRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP   80 (81)
T ss_dssp             SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred             CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence            458999999999999999999999999999999999988  999999999999999999999999999999998864

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.18  E-value=6.7e-15  Score=120.81  Aligned_cols=74  Identities=22%  Similarity=0.410  Sum_probs=71.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      |+|+| +.+|+++.++|++++||.+||.+|++..|+|++.|+|+|+|+.|. |+.+|++|||++|++|||++++++
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~rlrg   75 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR   75 (76)
Confidence            89999 789999999999999999999999999999999999999999997 899999999999999999999875

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.44  E-value=1.2e-13  Score=124.15  Aligned_cols=74  Identities=18%  Similarity=0.196  Sum_probs=66.0

Q ss_pred             EEEEE-EeCC-eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcc-------cccceeEEe
Q 007773           34 ILIFL-SVGG-SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLA-------DGNVLHLVL  104 (590)
Q Consensus        34 M~I~V-tl~G-~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~-------~gstL~Lvl  104 (590)
                      |+++| ...+ .+++++|.+++||.+||.+|+.++|+|+++|+|+|+|++|. |+.+|++|||+       ++++|||++
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~Le-D~~TLsdy~I~~~~a~~q~~stL~L~l   79 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECC-CCCCHHHcCcccccccCCCCCEEEEEe
Confidence            55666 3344 57999999999999999999999999999999999999997 99999999999       799999999


Q ss_pred             eeccc
Q 007773          105 RLSDL  109 (590)
Q Consensus       105 rLsd~  109 (590)
                      + .|+
T Consensus        80 r-~~g   83 (118)
T 2fnj_B           80 R-ADD   83 (118)
T ss_dssp             B-SSS
T ss_pred             c-CCC
Confidence            9 544

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.7e-13  Score=118.82  Aligned_cols=76  Identities=32%  Similarity=0.435  Sum_probs=71.5

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ...|+|+||+.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus        20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl   95 (98)
T 4hcn_B           20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   95 (98)
T ss_dssp             --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBC
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            3459999999999999999999999999999999999988  999999999999999999999999999999999874

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.44  E-value=3.4e-13  Score=110.55  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=68.6

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+|++ +|+.+.++|+++.||.+||++|+...|++  +++|+|+|+|+.|+|+.+|++|++++|++|+++.+.
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~   76 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   76 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC--HHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence            8899999 99999999999999999999999999988  999999999999999999999999999999997653

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.44  E-value=1.4e-13  Score=118.06  Aligned_cols=78  Identities=18%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             CCCEEEEE-EeCCe--EEEEEecCCCCHHHHHHHHHHhh--CCCccceEEEEcCcccccCCcccccc--CcccccceeEE
Q 007773           31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSYN--GFFVKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~V-tl~G~--t~~l~V~~sdTV~~LK~kIq~~~--Gip~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstL~Lv  103 (590)
                      ...|+|+| +.+++  ++.++|.+++||.+||.+|++++  |+|+++|+|+|.|+.|. |+.+|.+|  +|+++++|||+
T Consensus         5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~-D~~tL~~~~~~i~~~~~i~lv   83 (93)
T 1wgd_A            5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred             CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECc-CcCCHHHHhcCCCCCCEEEEE
Confidence            46799999 67777  67788889999999999999998  99999999999999998 88999999  99999999999


Q ss_pred             eeeccc
Q 007773          104 LRLSDL  109 (590)
Q Consensus       104 lrLsd~  109 (590)
                      +++.++
T Consensus        84 ~~~~gg   89 (93)
T 1wgd_A           84 CNVKSG   89 (93)
T ss_dssp             CCCCCC
T ss_pred             eCCCCC
Confidence            998765

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.44  E-value=1.8e-13  Score=120.49  Aligned_cols=78  Identities=18%  Similarity=0.292  Sum_probs=72.9

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      +...|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+.+|+|+|+|+.|. |+.+|.+|||++|++|||+++.++
T Consensus        20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~ti~lv~~~~~   98 (106)
T 1ttn_A           20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVSQPV   98 (106)
T ss_dssp             -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCC
Confidence            467899999 789999999999999999999999999999999999999999997 899999999999999999987654

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.43  E-value=2.9e-13  Score=112.96  Aligned_cols=74  Identities=31%  Similarity=0.386  Sum_probs=71.1

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      .|+|+|++.+|+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+++++++|+|++|.
T Consensus         3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~   76 (85)
T 3mtn_B            3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRL   76 (85)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCC
T ss_pred             eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEEC
Confidence            48999999999999999999999999999999999988  999999999999999999999999999999999874

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.43  E-value=2.6e-13  Score=121.55  Aligned_cols=74  Identities=18%  Similarity=0.213  Sum_probs=67.6

Q ss_pred             EEEEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCccc-------ccceeEEe
Q 007773           34 ILIFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLAD-------GNVLHLVL  104 (590)
Q Consensus        34 M~I~V--tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~-------gstL~Lvl  104 (590)
                      |.+|+  .....++.++|.+++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.||++|||++       +++|||++
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~Le-D~kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECC-CcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence            55666  555569999999999999999999999999999999999999997 999999999999       99999999


Q ss_pred             eecc
Q 007773          105 RLSD  108 (590)
Q Consensus       105 rLsd  108 (590)
                      |..|
T Consensus        80 r~~~   83 (118)
T 4ajy_B           80 RADD   83 (118)
T ss_dssp             CCSS
T ss_pred             ecCC
Confidence            9744

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.2e-13  Score=121.70  Aligned_cols=73  Identities=18%  Similarity=0.356  Sum_probs=68.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      |+|+| +++|+++.++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++.+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~i~~g~~i~lv~~~~   75 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQ-DSKTVSECGLKDGDQVVFMVSQK   75 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECC-TTSBTTTTTCCTTCEEEEECCC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECC-CcCCHHHcCCCCCCEEEEEEcCC
Confidence            88999 689999999999999999999999999999999999999999997 89999999999999999998754

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.42  E-value=3.4e-13  Score=120.99  Aligned_cols=77  Identities=25%  Similarity=0.299  Sum_probs=69.9

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHH------hhCC--CccceEEEEcCcccccCCccccccCcccc--c
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGF--FVKKQKLVFEGRELARSNSRVRDYGLADG--N   98 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~------~~Gi--p~~~QrLvf~Gk~L~~D~~tL~dygI~~g--s   98 (590)
                      +.+.|+|+| +++|++++++|++++||.+||.+|+.      ++|+  ++++|+|+|+|++|+ |+.+|++|+|+.+  .
T Consensus        13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~Le-D~~TL~~y~I~~~~~~   91 (116)
T 1wgh_A           13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTT   91 (116)
T ss_dssp             CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSSCEE
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCce
Confidence            367899999 78999999999999999999999999      6775  699999999999997 9999999999765  6


Q ss_pred             ceeEEeeec
Q 007773           99 VLHLVLRLS  107 (590)
Q Consensus        99 tL~LvlrLs  107 (590)
                      +|||++++.
T Consensus        92 tlhLvlr~~  100 (116)
T 1wgh_A           92 VMHLVARET  100 (116)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEccCC
Confidence            899998875

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.42  E-value=5.9e-13  Score=109.14  Aligned_cols=71  Identities=27%  Similarity=0.463  Sum_probs=66.8

Q ss_pred             EEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           34 ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        34 M~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      |+|+|+.+|+++.++|.+++||.+||.+|+...|+|++.|+|+|+|+.|. |+.+|++|||++|++||++.+
T Consensus         5 m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~-d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEEc
Confidence            88999339999999999999999999999999999999999999999997 889999999999999998764

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.42  E-value=3.5e-13  Score=122.34  Aligned_cols=78  Identities=19%  Similarity=0.316  Sum_probs=71.6

Q ss_pred             CCCEEEEE-EeCCeEE-EEEecCCCCHHHHHHHH-----HHhhCCCc--cceEEEEcCcccccCCccccccCcccc----
Q 007773           31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRI-----QSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLADG----   97 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~-~l~V~~sdTV~~LK~kI-----q~~~Gip~--~~QrLvf~Gk~L~~D~~tL~dygI~~g----   97 (590)
                      .+.|+|+| +++|+.+ ++++++++||.+||++|     +.++|+|+  ++|+|+|+|++|+ |+.+|++|+|+.+    
T Consensus        14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~Le-D~~TLsdy~I~~~~~~~   92 (126)
T 1se9_A           14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG   92 (126)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred             cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECc-CCCcHHHcCCCcCCccC
Confidence            58899999 9999877 79999999999999999     66788986  8999999999998 9999999999998    


Q ss_pred             --cceeEEeeeccc
Q 007773           98 --NVLHLVLRLSDL  109 (590)
Q Consensus        98 --stL~LvlrLsd~  109 (590)
                        .++||+++++++
T Consensus        93 ~v~tmhlVlrl~g~  106 (126)
T 1se9_A           93 AVTTMHVIIQAPVT  106 (126)
T ss_dssp             CCEEEEEEECCCSS
T ss_pred             CcEEEEEEeccCCc
Confidence              789999999865

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=3.4e-13  Score=118.67  Aligned_cols=77  Identities=14%  Similarity=0.159  Sum_probs=72.8

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ..|+|+||+.+|+.+.++|++++||.+||++|+.+.|++  +++|+|+|+|+.|+|+++|++|+|++|++|||+++++.
T Consensus        22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~   98 (106)
T 1ttn_A           22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   98 (106)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence            348999999999999999999999999999999999988  99999999999999999999999999999999987654

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.42  E-value=3.9e-13  Score=115.97  Aligned_cols=76  Identities=21%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEeecC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ...|+|+||+.+| ++.++|++++||.+||++|+.+.|++  +++|+|+|+|+.|+|+ .+|++|+|+++++|+|+++..
T Consensus        13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~   89 (94)
T 2kan_A           13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP--IKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI   89 (94)
T ss_dssp             SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC--TTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred             CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC--HHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence            4568999999888 89999999999999999999999998  9999999999999999 999999999999999998854

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=3.9e-13  Score=117.28  Aligned_cols=78  Identities=21%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      .+..|+|+| +++|+ +.++|++++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|||+++++|+|++++++
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEcCCC
Confidence            367899999 66776 799999999999999999999999999999999999997 899999999999999999998875


Q ss_pred             c
Q 007773          109 L  109 (590)
Q Consensus       109 ~  109 (590)
                      +
T Consensus        97 ~   97 (100)
T 1yqb_A           97 R   97 (100)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=4.4e-13  Score=115.54  Aligned_cols=73  Identities=18%  Similarity=0.424  Sum_probs=69.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHh---hCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSY---NGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~---~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      |+|+| +++|+++.++|++++||.+||.+|+..   +|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+++..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~-D~~tL~~ygI~~g~~i~l~~~~~   77 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECC-CcCcHHHCCCCCCCEEEEEEeCC
Confidence            89999 788999999999999999999999999   899999999999999997 89999999999999999988754

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.41  E-value=3.2e-13  Score=122.60  Aligned_cols=81  Identities=16%  Similarity=0.249  Sum_probs=70.5

Q ss_pred             eecccccceeeeccceee-EEEeecCCcHHHHHHHHH-----HhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC---
Q 007773          105 RLSDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIA-----KKGREFVDLKNQELICDGEELEDQRLITDICKRNE---  175 (590)
Q Consensus       105 rLsd~m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~-----~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~g---  175 (590)
                      ...+.|.|+|||.+|+.+ ++++++++||.+||++|+     .++++|.++++|+|+|+|+.|+|+++|++|+|+.+   
T Consensus        12 ~~~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~   91 (126)
T 1se9_A           12 EVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLA   91 (126)
T ss_dssp             SSCCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCT
T ss_pred             hhcccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCcc
Confidence            345789999999999988 699999999999999995     45567633489999999999999999999999988   


Q ss_pred             ---CEEEEEeecC
Q 007773          176 ---AVIHLLVRKS  185 (590)
Q Consensus       176 ---svI~L~vrks  185 (590)
                         +++||+++..
T Consensus        92 ~~v~tmhlVlrl~  104 (126)
T 1se9_A           92 GAVTTMHVIIQAP  104 (126)
T ss_dssp             TCCEEEEEEECCC
T ss_pred             CCcEEEEEEeccC
Confidence               6899998743

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.41  E-value=4.9e-13  Score=118.60  Aligned_cols=78  Identities=35%  Similarity=0.576  Sum_probs=73.3

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| +++|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|++|+|+++++|||++++.++
T Consensus        33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~gs~I~l~~rl~GG  111 (111)
T 2ojr_A           33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG  111 (111)
T ss_dssp             SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECC-SSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred             CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECC-CCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            46899999 678999999999999999999999999999999999999999997 8999999999999999999998764

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.41  E-value=2.5e-13  Score=120.43  Aligned_cols=78  Identities=24%  Similarity=0.281  Sum_probs=73.6

Q ss_pred             CCCEEEEE-Ee---CCeEEEEEecC-CCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFL-SV---GGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl---~G~t~~l~V~~-sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...|+|+| +.   +|+++.++|.+ ++||.+||.+|+..+|+|+++|+|+|+|+.|. |+.+|++|+|++|++|||+++
T Consensus        25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECS
T ss_pred             CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECC-CCCcHHHCCCCCCCEEEEEEE
Confidence            46799999 66   78999999998 99999999999999999999999999999997 899999999999999999999


Q ss_pred             eccc
Q 007773          106 LSDL  109 (590)
Q Consensus       106 Lsd~  109 (590)
                      ++++
T Consensus       104 ~~GG  107 (111)
T 1we6_A          104 ERSG  107 (111)
T ss_dssp             SCCS
T ss_pred             cCCC
Confidence            9876

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=1.8e-13  Score=117.82  Aligned_cols=78  Identities=19%  Similarity=0.300  Sum_probs=72.4

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+|+..|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++
T Consensus        15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~g   92 (96)
T 1wx8_A           15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVRSHSG   92 (96)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred             CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECC-CcCCHHHCCCCCCCEEEEEEeCCCC
Confidence            47799999433999999999999999999999999999999999999999997 8999999999999999999988764

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.41  E-value=1.3e-13  Score=121.68  Aligned_cols=78  Identities=21%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC---------------CcEEEEECCEEcC-CCCcccccCC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---------------KNQELICDGEELE-DQRLITDICK  172 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~---------------~~Q~Lif~Gk~Le-D~~tL~dy~I  172 (590)
                      .|+|+|++.+|+++.++|++++||.+||++|+++.+++  +               ++|+|+|+|+.|. |.++|.+|+|
T Consensus         7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~--~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI   84 (105)
T 1v2y_A            7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI   84 (105)
T ss_dssp             SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred             cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence            39999999999999999999999999999999999876  5               4689999999996 6799999999


Q ss_pred             CCCCEEEEEeecCCCc
Q 007773          173 RNEAVIHLLVRKSAKV  188 (590)
Q Consensus       173 ~~gsvI~L~vrks~kv  188 (590)
                      +++++|||+.+...+-
T Consensus        85 ~~g~~l~lv~~lr~~~  100 (105)
T 1v2y_A           85 RNRDEVSFIKKLGQKS  100 (105)
T ss_dssp             CSSEEEEEEECSCSCC
T ss_pred             CCCCEEEEEehhccCC
Confidence            9999999999866553

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.40  E-value=7.4e-13  Score=114.46  Aligned_cols=74  Identities=32%  Similarity=0.447  Sum_probs=71.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+.+.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|+++++++|+|+++..
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~   74 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence            7899999999999999999999999999999999988  9999999999999999999999999999999998854

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.40  E-value=3.6e-13  Score=120.95  Aligned_cols=72  Identities=15%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             ccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCC-------CCCEEEEE
Q 007773          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKR-------NEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~-------~gsvI~L~  181 (590)
                      |.++|++..++ ++.++|++++||.+||++|+.+.|++  +++|+|+|+|+.|+|+++|++|+|+       ++++|||+
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~   78 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence            56777777775 58899999999999999999999998  9999999999999999999999999       79999999


Q ss_pred             ee
Q 007773          182 VR  183 (590)
Q Consensus       182 vr  183 (590)
                      +|
T Consensus        79 lr   80 (118)
T 2fnj_B           79 FR   80 (118)
T ss_dssp             EB
T ss_pred             ec
Confidence            98

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.40  E-value=5.4e-13  Score=119.55  Aligned_cols=74  Identities=15%  Similarity=0.086  Sum_probs=68.3

Q ss_pred             ccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCC-------CCEEEEE
Q 007773          110 QAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRN-------EAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~-------gsvI~L~  181 (590)
                      |.+||+...++ ++.++|++++||.+||++|+.+.|++  +++|+|+|+|+.|+|.+||++|+|++       +++|||+
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giP--p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv   78 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA   78 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCC--HHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence            56777777776 77889999999999999999999998  99999999999999999999999999       9999999


Q ss_pred             eecC
Q 007773          182 VRKS  185 (590)
Q Consensus       182 vrks  185 (590)
                      +|..
T Consensus        79 lr~~   82 (118)
T 4ajy_B           79 FRAD   82 (118)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            9854

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.40  E-value=6.1e-13  Score=116.28  Aligned_cols=79  Identities=16%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             CCCEEEEE-EeCC----eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFL-SVGG----SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~G----~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...|+|+| ..++    +++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|.+|..+|.+|+|+++++|||+.+
T Consensus         5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A            5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            45699999 5543    799999999999999999999999999999999999999983337999999999999999998


Q ss_pred             eccc
Q 007773          106 LSDL  109 (590)
Q Consensus       106 Lsd~  109 (590)
                      .+++
T Consensus        85 ~~gg   88 (102)
T 1v5o_A           85 DNVG   88 (102)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8665

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.39  E-value=4.5e-13  Score=115.21  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ...|+|+|++  |+.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus        17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl   90 (93)
T 2l7r_A           17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA--PEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM   90 (93)
T ss_dssp             ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC--GGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred             CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC--hhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            4569999998  8999999999999999999999999988  999999999999999999999999999999999874

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.39  E-value=8.3e-13  Score=115.19  Aligned_cols=78  Identities=22%  Similarity=0.317  Sum_probs=72.3

Q ss_pred             ecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       106 Lsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .+..|+|+|++.+|+ +.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++..
T Consensus        19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~   95 (100)
T 1yqb_A           19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ   95 (100)
T ss_dssp             CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCC
Confidence            345699999999886 7999999999999999999999988  9999999999999999999999999999999998865


Q ss_pred             C
Q 007773          186 A  186 (590)
Q Consensus       186 ~  186 (590)
                      .
T Consensus        96 ~   96 (100)
T 1yqb_A           96 H   96 (100)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.39  E-value=8.7e-13  Score=117.13  Aligned_cols=74  Identities=32%  Similarity=0.442  Sum_probs=71.4

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      .|+|+|++.+|+.+.++|+++.||.+||++|+++.++|  +++|+|+|+|+.|+|..+|++|+|+++++|||++|.
T Consensus        35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl  108 (111)
T 3vdz_A           35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL  108 (111)
T ss_dssp             CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred             cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence            48999999999999999999999999999999999988  999999999999999999999999999999999874

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.39  E-value=1.3e-12  Score=114.11  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=71.4

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      ...|+|+|+..|+++.++|++++||.+||.+|+...|+|+..|+|+|+|+.|. |+.+|++|||++|++|+|+++++.
T Consensus        23 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           23 PKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILK-DQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCC
Confidence            57899999434899999999999999999999999999999999999999997 899999999999999999988754

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.09  E-value=3.2e-14  Score=116.77  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=70.7

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+++.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|++++|++|||++|..
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlr   74 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPR   74 (76)
Confidence            7899999999999999999999999999999999988  9999999999999999999999999999999998743

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.39  E-value=4.6e-13  Score=121.67  Aligned_cols=78  Identities=18%  Similarity=0.261  Sum_probs=70.2

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHH------hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC--EEE
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK------KGREFVDLKNQELICDGEELEDQRLITDICKRNEA--VIH  179 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~------~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs--vI~  179 (590)
                      ..|.|+|||.+|++++++|++++||.+||++|+.      +++++.++++|+|+|+|+.|+|+++|++|+|+.++  +||
T Consensus        16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh   95 (125)
T 2gow_A           16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH   95 (125)
T ss_dssp             TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred             CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence            4588999999999999999999999999999999      67775558999999999999999999999998665  789


Q ss_pred             EEeecC
Q 007773          180 LLVRKS  185 (590)
Q Consensus       180 L~vrks  185 (590)
                      |++|..
T Consensus        96 lv~r~~  101 (125)
T 2gow_A           96 LVARET  101 (125)
T ss_dssp             EEECSC
T ss_pred             EEecCC
Confidence            988754

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=6.6e-13  Score=113.80  Aligned_cols=76  Identities=24%  Similarity=0.355  Sum_probs=68.7

Q ss_pred             ccccceeeeccce--eeEEEeecCCcHHHHHHHHHHhc--CCCCCCCcEEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKG--REFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk--~~~i~Vd~s~TV~~LK~kI~~~~--gi~~~~~~Q~Lif~Gk~LeD~~tL~dy--~I~~gsvI~L~  181 (590)
                      ..|+|+||+.+|+  .+.++|++++||.+||++|+++.  +++  +++|+|+|+|+.|+|+++|++|  +|+++++|||+
T Consensus         6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv   83 (93)
T 1wgd_A            6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred             cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence            3489999999988  56667779999999999999998  887  9999999999999999999999  99999999999


Q ss_pred             eecC
Q 007773          182 VRKS  185 (590)
Q Consensus       182 vrks  185 (590)
                      ++..
T Consensus        84 ~~~~   87 (93)
T 1wgd_A           84 CNVK   87 (93)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            8743

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=7.4e-13  Score=115.69  Aligned_cols=65  Identities=8%  Similarity=-0.011  Sum_probs=59.8

Q ss_pred             ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ++++.++|++++||.+||++|++++|+|  +++|+|+|+|++|+|+++|++|+|+++++|+++.-+.
T Consensus        29 ~~~~~lev~~~~TV~~lK~kI~~k~gip--~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg   93 (100)
T 1wju_A           29 DRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ   93 (100)
T ss_dssp             SSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred             CcEEEEEeCCcCHHHHHHHHHHHHHCcC--HHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence            7889999999999999999999999988  9999999999999999999999999999995543333

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=114.24  Aligned_cols=77  Identities=23%  Similarity=0.333  Sum_probs=71.8

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ...|+|+|++. |+.+.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++.+.
T Consensus        23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~   99 (101)
T 2klc_A           23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN   99 (101)
T ss_dssp             CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred             CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence            45689999998 8899999999999999999999999988  99999999999999999999999999999999987553

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=2.8e-13  Score=118.32  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             CCEEEEE-EeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           32 DSILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        32 ~sM~I~V-tl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      .+++|++ .-.  +++++++|.+++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|++|++| +++++++
T Consensus        16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~-D~~TL~~y~I~~gsti-~vl~lrg   93 (100)
T 1wju_A           16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKA-MVLELKQ   93 (100)
T ss_dssp             EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEE-EEECCCC
T ss_pred             EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECC-CCCcHHHcCCCCCCEE-EEEEECC
Confidence            4566665 212  689999999999999999999999999999999999999997 8999999999999999 6666654

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.38  E-value=1.2e-12  Score=124.84  Aligned_cols=74  Identities=32%  Similarity=0.456  Sum_probs=71.3

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+||+.+|+++.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+++|++|+|+++++|||++|..
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~   74 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEec
Confidence            7899999999999999999999999999999999988  9999999999999999999999999999999999844

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.37  E-value=7e-13  Score=125.91  Aligned_cols=78  Identities=35%  Similarity=0.604  Sum_probs=70.5

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .+.|+|+| +.+|++++++|.+++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|.+|+|++|++|||+++++++
T Consensus        94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-D~~tL~~y~i~~g~tl~l~~rlrgG  172 (172)
T 3u30_A           94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG  172 (172)
T ss_dssp             CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECC-TTSBSGGGTCCTTCEEEECC-----
T ss_pred             cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCC-CCCcHHHhCCCCCCEEEEEEecCCC
Confidence            46799999 899999999999999999999999999999999999999999997 8999999999999999999998874

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.37  E-value=9e-13  Score=116.82  Aligned_cols=79  Identities=23%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             cccccceeeec---cceeeEEEeec-CCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          107 SDLQAITVTTV---CGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       107 sd~m~I~Vkt~---~Gk~~~i~Vd~-s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      ++.|+|+|++.   +|+.+.++|++ ++||.+||++|+...|++  +++|+|+|+|+.|+|+++|++|+|+++++|+|++
T Consensus        25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~  102 (111)
T 1we6_A           25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL  102 (111)
T ss_dssp             CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred             CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC--HHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence            45689999998   89999999998 999999999999999988  9999999999999999999999999999999998


Q ss_pred             e-cCCC
Q 007773          183 R-KSAK  187 (590)
Q Consensus       183 r-ks~k  187 (590)
                      + ++.|
T Consensus       103 r~~GGk  108 (111)
T 1we6_A          103 RERSGP  108 (111)
T ss_dssp             SSCCSS
T ss_pred             EcCCCC
Confidence            8 4443

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.37  E-value=8.8e-13  Score=119.80  Aligned_cols=77  Identities=25%  Similarity=0.294  Sum_probs=69.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHH------hhCCC--ccceEEEEcCcccccCCccccccCccccc--c
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS------YNGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN--V   99 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~------~~Gip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gs--t   99 (590)
                      ...|+|+| +++|++++++|++++||.+||++|++      ++|+|  +++|+|+|+|+.|+ |+.+|++|+|+.++  +
T Consensus        15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~Le-D~~TL~~y~I~~~~~~t   93 (125)
T 2gow_A           15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFGKTTV   93 (125)
T ss_dssp             TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEE-SSCBTGGGCCCTTSEEE
T ss_pred             CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCC-CCCcHHHcCCCCCCceE
Confidence            45699999 78999999999999999999999999      78884  89999999999998 99999999999665  7


Q ss_pred             eeEEeeecc
Q 007773          100 LHLVLRLSD  108 (590)
Q Consensus       100 L~LvlrLsd  108 (590)
                      +||++++..
T Consensus        94 lhlv~r~~~  102 (125)
T 2gow_A           94 MHLVARETL  102 (125)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEecCCC
Confidence            899998864

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=1.4e-12  Score=114.52  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=71.2

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| ..+|+ +.++|.+++||.+||.+|++++|+++++|+|+|+|+.|. |+.+|.+|+|+++++|||++++.++
T Consensus        15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~gi~~g~~i~l~~~~~~~   92 (106)
T 1wx7_A           15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQHR   92 (106)
T ss_dssp             SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECC-TTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred             CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECC-CcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            56799999 56665 799999999999999999999999999999999999997 8999999999999999999988765

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.36  E-value=2e-12  Score=114.66  Aligned_cols=76  Identities=32%  Similarity=0.413  Sum_probs=71.9

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ..|+|+|++.+|+.+.++|+++.||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+++++++|+|++|..
T Consensus        34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~  109 (111)
T 2ojr_A           34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  109 (111)
T ss_dssp             SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC--TTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC--cccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            358999999999999999999999999999999999988  9999999999999999999999999999999998743

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.36  E-value=1.8e-12  Score=114.21  Aligned_cols=74  Identities=19%  Similarity=0.158  Sum_probs=65.9

Q ss_pred             CCCEEEEE-EeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCc-ccccceeEEee
Q 007773           31 NDSILIFL-SVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL-ADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI-~~gstL~Lvlr  105 (590)
                      +=.|+|+| ...  +.+++++|.|++||++||.+|++++|+|+.+|||+|+|+.+. |+.+|.+||| ++|+++||++.
T Consensus        22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~-D~~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLAR-DQETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC-TTCBTGGGTCCSTTCEEEEEEC
T ss_pred             cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEcc-CcCcHHHcCCCCCCCEEEEEEE
Confidence            34577777 555  379999999999999999999999999999999999999776 8999999999 69999999873

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.36  E-value=5.8e-14  Score=127.73  Aligned_cols=76  Identities=36%  Similarity=0.606  Sum_probs=0.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      |+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++++.++.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~~I~~gsti~l~~rl~GG~   77 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGGI   77 (128)
T ss_dssp             -----------------------------------------------------------------------------C
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECC-CCCchhhhccCCCCEEEEEEEcCCCC
Confidence            89999 889999999999999999999999999999999999999999997 89999999999999999999998763

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.35  E-value=2.2e-12  Score=113.32  Aligned_cols=77  Identities=22%  Similarity=0.340  Sum_probs=71.0

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k  187 (590)
                      ..|+|+|++.+|+ +.++|+.++||.+||++|++..+++  +++|+|+|+|+.|+|+++|.+|+|+++++|||+++....
T Consensus        16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~   92 (106)
T 1wx7_A           16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   92 (106)
T ss_dssp             SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC--TTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred             ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC--hhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence            4489999998886 7999999999999999999999988  999999999999999999999999999999999885543

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.35  E-value=1.7e-12  Score=117.85  Aligned_cols=76  Identities=24%  Similarity=0.319  Sum_probs=69.9

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ..|+|+|++. |+.+.++|++++||.+||++|+++.+++  +++|+|+|+|+.|+|+++|.+|+|+++++|+|+++...
T Consensus        31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g  106 (125)
T 1j8c_A           31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP  106 (125)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred             CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            4589999998 9999999999999999999999999988  99999999999999999999999999999999988543

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.35  E-value=2.9e-12  Score=108.36  Aligned_cols=75  Identities=25%  Similarity=0.470  Sum_probs=69.8

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      +.+++.+.++++|+++.++|++++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus         9 ~~~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~-D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A            9 SHSTIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLV-ETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             SCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECC-TTCBTTTTTCCTTEEEEEECC
T ss_pred             cCCcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECC-CcCCHHHCCCCCCCEEEEEEe
Confidence            457788877999999999999999999999999999999999999999999997 899999999999999998753

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.34  E-value=9.6e-13  Score=113.24  Aligned_cols=75  Identities=25%  Similarity=0.320  Sum_probs=70.6

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ..|+|+|++. |+.+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+++|.+|+|+++++|||+++..
T Consensus        16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~   90 (96)
T 1wx8_A           16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH   90 (96)
T ss_dssp             CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred             CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence            4589999998 9999999999999999999999999988  9999999999999999999999999999999988754

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.34  E-value=1.8e-12  Score=111.43  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=70.3

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEeecCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ..|+|+|++.+|+.+.++|++++||.+||++|+...     +++|+|+|+|+.|+|+ ++|.+|+|+++++|||+++++.
T Consensus         6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~   80 (95)
T 1wia_A            6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence            358999999999999999999999999999999886     5899999999999999 9999999999999999988665


Q ss_pred             Ccc
Q 007773          187 KVR  189 (590)
Q Consensus       187 kv~  189 (590)
                      ..+
T Consensus        81 ~~~   83 (95)
T 1wia_A           81 AAV   83 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=3.1e-12  Score=114.19  Aligned_cols=79  Identities=29%  Similarity=0.389  Sum_probs=73.9

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      .+..+|+|++.+|+.+.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++...
T Consensus         7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G   84 (114)
T 2kdi_A            7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG   84 (114)
T ss_dssp             CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred             CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence            3567899999999999999999999999999999999988  99999999999999999999999999999999988554


Q ss_pred             C
Q 007773          187 K  187 (590)
Q Consensus       187 k  187 (590)
                      .
T Consensus        85 G   85 (114)
T 2kdi_A           85 G   85 (114)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.34  E-value=2.3e-12  Score=114.92  Aligned_cols=78  Identities=26%  Similarity=0.422  Sum_probs=72.0

Q ss_pred             CCCEEEEEEe-----------CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccc
Q 007773           31 NDSILIFLSV-----------GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNV   99 (590)
Q Consensus        31 ~~sM~I~Vtl-----------~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gst   99 (590)
                      +..|+|+|+.           +|+++.++|++++||.+||.+|+...|+|+++|+|+|+|+.|. |+.+|++|+|+++++
T Consensus        23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~-D~~tL~~y~i~~g~~  101 (115)
T 1we7_A           23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMASGAV  101 (115)
T ss_dssp             CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEEC-TTSBHHHHTCCSSCE
T ss_pred             CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECC-CCCCHHHCCCCCCCE
Confidence            4578888832           4789999999999999999999999999999999999999997 899999999999999


Q ss_pred             eeEEeeeccc
Q 007773          100 LHLVLRLSDL  109 (590)
Q Consensus       100 L~LvlrLsd~  109 (590)
                      |||++++.++
T Consensus       102 i~lv~rl~GG  111 (115)
T 1we7_A          102 IHLALKERSG  111 (115)
T ss_dssp             EEEEECCCSC
T ss_pred             EEEEEEcCCC
Confidence            9999999876

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.33  E-value=1.8e-12  Score=110.67  Aligned_cols=76  Identities=16%  Similarity=0.334  Sum_probs=70.9

Q ss_pred             CCCEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHhhCCCccceEEE---EcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      ...|+|+|+..|+++.+ +|++++||.+||.+|++++|+|+++|+|+   |.|+.|. |+.+|++|+|+++++|+|+...
T Consensus         5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~-D~~~L~~~~i~~g~~l~l~~~~   83 (90)
T 1v5t_A            5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred             CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcC-CCCCHHHcCCCCCCEEEEEecC
Confidence            57899999779999999 99999999999999999999999999999   9999997 8999999999999999998654


Q ss_pred             c
Q 007773          107 S  107 (590)
Q Consensus       107 s  107 (590)
                      .
T Consensus        84 ~   84 (90)
T 1v5t_A           84 E   84 (90)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.33  E-value=1.1e-12  Score=114.47  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             ccccceeeeccce--eeEEEeecCCcHHHHHHHHHHh-cCCCCCCCcEEEEECCEEcCCCCccccc--CCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKK-GREFVDLKNQELICDGEELEDQRLITDI--CKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk--~~~i~Vd~s~TV~~LK~kI~~~-~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy--~I~~gsvI~L~  181 (590)
                      ..|+|+||+.+|+  .++++|++++||.+||++|+++ .|++ |+++|+|+|+|+.|+|+++|++|  +|+++++|||+
T Consensus        22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~p-p~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKP-LTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCC-CTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred             CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCC-ChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence            4589999999998  6789999999999999999986 4655 36999999999999999999999  99999999984

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.33  E-value=2e-12  Score=112.97  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             ccccceeeeccc----eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCC-CcccccCCCCCCEEEEEe
Q 007773          108 DLQAITVTTVCG----KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQ-RLITDICKRNEAVIHLLV  182 (590)
Q Consensus       108 d~m~I~Vkt~~G----k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~-~tL~dy~I~~gsvI~L~v  182 (590)
                      ..|+|+|++.++    +.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+ ++|++|+|+++++|+|+.
T Consensus         6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~   83 (102)
T 1v5o_A            6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ   83 (102)
T ss_dssp             CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred             CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence            358899998654    789999999999999999999999988  9999999999999987 799999999999999988


Q ss_pred             ecCCCcc
Q 007773          183 RKSAKVR  189 (590)
Q Consensus       183 rks~kv~  189 (590)
                      +....-+
T Consensus        84 ~~~gg~~   90 (102)
T 1v5o_A           84 KDNVGLR   90 (102)
T ss_dssp             CCCCCCS
T ss_pred             CCCCCCC
Confidence            7554433

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.33  E-value=1.2e-13  Score=129.49  Aligned_cols=75  Identities=36%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +++|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|++|. |+.+|++|+|++|++|+|++++.++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~dygI~~gstL~Lvlrl~GG   76 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (152)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcc-ccCcHHHcCCCCCCEEEEEeeccCC
Confidence            89999 889999999999999999999999999999999999999999997 8999999999999999999999876

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=2.2e-12  Score=111.71  Aligned_cols=75  Identities=11%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             CCCEEEEEEeCCeEE-EEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           31 NDSILIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~-~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      .+.|+|+|+..|+++ .++|++++||.+||.+|++++|+|+++|+|+|.|+.|. |+ +|.+|+|+++++|+|+....
T Consensus         5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~-D~-tL~~~~I~~g~~i~l~~~~~   80 (96)
T 1wgg_A            5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSAD   80 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCCC
T ss_pred             CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCC-CC-CHHHCCCCCCCEEEEEecch
Confidence            578999997789999 69999999999999999999999999999999999997 77 99999999999999987654

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.32  E-value=4.4e-12  Score=116.79  Aligned_cols=78  Identities=35%  Similarity=0.604  Sum_probs=73.4

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|+| +++|+++.++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+++++|+
T Consensus        74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~-d~~tL~~~~i~~~~~i~l~~r~~GG  152 (152)
T 3b08_A           74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG  152 (152)
T ss_dssp             TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred             ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            45699999 789999999999999999999999999999999999999999997 8999999999999999999998874

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=3.2e-12  Score=109.84  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCC-ccccccCcccccceeEEeeec
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSN-SRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~-~tL~dygI~~gstL~LvlrLs  107 (590)
                      +...|+|+| +++|+++.++|.+++||.+||.+|+.+.   +++|+|+|+|+.|. |+ .+|++|+|++|++|||+++.+
T Consensus         4 ~~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~-D~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A            4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQ-DPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECC-CSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEcc-CCcCCHHHcCCCCCCEEEEEECCC
Confidence            357899999 7899999999999999999999999987   89999999999998 67 999999999999999998765


Q ss_pred             c
Q 007773          108 D  108 (590)
Q Consensus       108 d  108 (590)
                      .
T Consensus        80 ~   80 (95)
T 1wia_A           80 G   80 (95)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.32  E-value=4.7e-12  Score=111.53  Aligned_cols=73  Identities=12%  Similarity=-0.039  Sum_probs=68.2

Q ss_pred             ccceeeeccc--eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCC-CCCCEEEEEeec
Q 007773          110 QAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICK-RNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~G--k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I-~~gsvI~L~vrk  184 (590)
                      |+|+|++..+  .+++++|++++||.+||++|++++|+|  +++|+|+|+|+.++|+++|.+|+| ++|+++||++-.
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip--p~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~  100 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP--PVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS  100 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC--HHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence            7899998774  789999999999999999999999998  999999999999999999999999 699999998753

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.31  E-value=1.4e-12  Score=113.93  Aligned_cols=72  Identities=17%  Similarity=0.294  Sum_probs=63.8

Q ss_pred             CCCEEEEE-EeCCe--EEEEEecCCCCHHHHHHHHHHh-hCCC-ccceEEEEcCcccccCCcccccc--CcccccceeEE
Q 007773           31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSY-NGFF-VKKQKLVFEGRELARSNSRVRDY--GLADGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~V-tl~G~--t~~l~V~~sdTV~~LK~kIq~~-~Gip-~~~QrLvf~Gk~L~~D~~tL~dy--gI~~gstL~Lv  103 (590)
                      ...|+|+| +++|+  +++++|.+++||.+||.+|+++ .|.| +++|+|+|+|+.|. |+.+|++|  +|+++++|||+
T Consensus        21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~-D~~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLP-DHLQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEEC-TTSBTHHHHTTTCSEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECC-CCCCHHHHhcCCCCCCEEEeC
Confidence            57799999 67777  6799999999999999999986 5666 59999999999998 89999999  99999999985

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.31  E-value=5.2e-12  Score=107.87  Aligned_cols=76  Identities=16%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             CCCEEEEEEeCCeEEEEEecCC-----CCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFLSVGGSVIPMRVMES-----DSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~s-----dTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...|+|+|+..|+++.++|.++     +||.+||.+|++.+|+|+++|+|+|.|+.|.+++.+|.+|+|+++++|||+.+
T Consensus         5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            4689999966789999999995     99999999999999999999999999999984467899999999999999875


Q ss_pred             e
Q 007773          106 L  106 (590)
Q Consensus       106 L  106 (590)
                      .
T Consensus        85 ~   85 (92)
T 1wxv_A           85 K   85 (92)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=2.9e-12  Score=112.10  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=67.3

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE--cCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf--~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      ...|++++ +++|++++++|++++||++||.+|++++|||+++|+|+|  .|+ |. |+.+|++|+|+.|++|||++.-
T Consensus         6 ~~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~-D~~tLs~~~I~~gstL~lvl~~   82 (100)
T 2dzm_A            6 SGRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VE-DSTVLKSLHLPKNNSLYVLTPD   82 (100)
T ss_dssp             CCCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CC-TTSBHHHHCCCSEEEEEECCSS
T ss_pred             CcceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CC-CcCCHHHcCCCCCCEEEEEecC
Confidence            34688888 899999999999999999999999999999999999986  666 86 8999999999999999998764

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.30  E-value=3.4e-12  Score=123.67  Aligned_cols=75  Identities=32%  Similarity=0.422  Sum_probs=71.9

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .|+|+||+.+|+++.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+.+|++|+|+++++|||+++..
T Consensus       105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp--~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr  179 (189)
T 3q3f_A          105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR  179 (189)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred             ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC--HHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence            39999999999999999999999999999999999988  9999999999999999999999999999999998744

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.29  E-value=7.5e-12  Score=111.63  Aligned_cols=69  Identities=22%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee-cCCC
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR-KSAK  187 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr-ks~k  187 (590)
                      ++|+.+.++|++++||.+||++|+...|++  +++|+|+|+|+.|+|+.+|++|+|+++++|||+++ ++++
T Consensus        43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk  112 (115)
T 1we7_A           43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP  112 (115)
T ss_dssp             CSSEEEEEEECSCSBTHHHHHHHHHHSSCC--TTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred             cCCeEEEEEECCCCCHHHHHHHHHHHHCCC--hHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence            468999999999999999999999999988  99999999999999999999999999999999988 4433

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.29  E-value=6.7e-12  Score=110.61  Aligned_cols=75  Identities=19%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             cccceeeeccc---eeeEEE--------eecC-CcHHHHHHHHHHhc--CCCCCCCc-EEEEECCEEcCCCCcccccCCC
Q 007773          109 LQAITVTTVCG---KVFEFH--------VERG-RNVGYVKQQIAKKG--REFVDLKN-QELICDGEELEDQRLITDICKR  173 (590)
Q Consensus       109 ~m~I~Vkt~~G---k~~~i~--------Vd~s-~TV~~LK~kI~~~~--gi~~~~~~-Q~Lif~Gk~LeD~~tL~dy~I~  173 (590)
                      .|+|+||+.++   +++.++        |+++ +||.+||++|+...  +++  +++ |+|+|+|+.|+|+++|++|+|+
T Consensus        12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip--~~~~qrLi~~Gk~L~D~~tL~~y~i~   89 (107)
T 1x1m_A           12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP--DPELIDLIYCGRKLKDDQTLDFYGIQ   89 (107)
T ss_dssp             SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC--CSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred             ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC--hhhcEEEEECCeECCCCCcHHHcCCC
Confidence            48999999988   889999        4454 99999999999999  988  999 9999999999999999999999


Q ss_pred             CCCEEEEEeecC
Q 007773          174 NEAVIHLLVRKS  185 (590)
Q Consensus       174 ~gsvI~L~vrks  185 (590)
                      ++++|||+++.+
T Consensus        90 ~g~~i~lv~~~~  101 (107)
T 1x1m_A           90 PGSTVHVLRKSW  101 (107)
T ss_dssp             TTCEEEEEESSC
T ss_pred             CCCEEEEEeCCC
Confidence            999999998755

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.28  E-value=1.3e-11  Score=106.99  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=66.1

Q ss_pred             CCCCCCCEEEEEEe-CC--eEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEc--Cc---ccccCCccccccCccccc
Q 007773           27 EKLSNDSILIFLSV-GG--SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFE--GR---ELARSNSRVRDYGLADGN   98 (590)
Q Consensus        27 ~~~~~~sM~I~Vtl-~G--~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk---~L~~D~~tL~dygI~~gs   98 (590)
                      ++.+.+.+.|+|+. .+  .+++++|.+++||++||.+|+.++|+|+.+|+|+|.  |+   .|.+|+.+|.+|||++|+
T Consensus         9 ~~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gs   88 (95)
T 2kjr_A            9 SHGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGL   88 (95)
T ss_dssp             CCCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSC
T ss_pred             ccCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCC
Confidence            33346889999953 33  489999999999999999999999999999999998  45   464589999999999999


Q ss_pred             ceeEE
Q 007773           99 VLHLV  103 (590)
Q Consensus        99 tL~Lv  103 (590)
                      +|||+
T Consensus        89 tihlv   93 (95)
T 2kjr_A           89 RLHVV   93 (95)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99985

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.28  E-value=5.9e-12  Score=109.02  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=72.0

Q ss_pred             ccccceeeeccceee-EEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          108 DLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ..|+|+|+. .|+.+ .++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|. +|++|+|+++++|+|+....+
T Consensus         6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~~   81 (96)
T 1wgg_A            6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA   81 (96)
T ss_dssp             CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred             cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecchh
Confidence            348899995 68999 699999999999999999999988  9999999999999999 999999999999999776553


Q ss_pred             CccCCCCcc
Q 007773          187 KVRAKPVQK  195 (590)
Q Consensus       187 kv~~~p~~k  195 (590)
                       ++..|.++
T Consensus        82 -~~~~p~~~   89 (96)
T 1wgg_A           82 -LPEEPSAK   89 (96)
T ss_dssp             -CCCCCCCS
T ss_pred             -cCCCCCcC
Confidence             54445443

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.28  E-value=9e-12  Score=105.33  Aligned_cols=71  Identities=18%  Similarity=0.187  Sum_probs=66.1

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      .+++++.+|+.+.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|++++|++|+|+..
T Consensus        13 ~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           13 IKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVL--PRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence            355677889999999999999999999999999988  99999999999999999999999999999999764

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.27  E-value=3.6e-13  Score=122.50  Aligned_cols=74  Identities=32%  Similarity=0.456  Sum_probs=0.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|++.+|+++.++|++++||.+||++|++..|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|+|+++..
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~   74 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR   74 (128)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC--hHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence            7899999999999999999999999999999999988  9999999999999999999999999999999998843

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.26  E-value=1.7e-12  Score=113.43  Aligned_cols=72  Identities=28%  Similarity=0.467  Sum_probs=65.6

Q ss_pred             CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      .|.|+|+.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|+.+
T Consensus        28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECC-TTSBTTTTTCCTTEEEEECCC
T ss_pred             EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECC-CcCcHHHCCCCCCCEEEEEeC
Confidence            455666448899999999999999999999999999999999999999997 899999999999999999865

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.26  E-value=6.3e-12  Score=108.56  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=68.3

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      ...|+|+|+..++++.++|++++||.+||.+|+.++|+|+++|+|+|.|+.|. |. +|.+|+|+++++|||+.+.
T Consensus        15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~-tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DK-TLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SS-BHHHHCCCTTEEEEECCSS
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cC-cHHHCCCCCCCEEEEEecc
Confidence            57799999888999999999999999999999999999999999999999993 55 9999999999999987643

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.25  E-value=1.3e-11  Score=105.04  Aligned_cols=72  Identities=18%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE-------cCcccccCCccccccCcccccceeE
Q 007773           33 SILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF-------EGRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        33 sM~I~Vt---l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf-------~Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      .++|.|+   ...+.+.+++++++||.+||.+|+.++|+|+++|+|+|       .|+.|. |+.+|.+|||++|++|||
T Consensus         2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-d~~tL~~Y~i~~g~~ihl   80 (86)
T 4b6w_A            2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-NDKQLGYYQCRDEFVIHV   80 (86)
T ss_dssp             EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-TTSBGGGGTCCTTCEEEE
T ss_pred             EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-CCCCHHHCCCCCCCEEEE
Confidence            3567774   34567899999999999999999999999999999996       588887 999999999999999999


Q ss_pred             Eee
Q 007773          103 VLR  105 (590)
Q Consensus       103 vlr  105 (590)
                      +-+
T Consensus        81 vd~   83 (86)
T 4b6w_A           81 VDL   83 (86)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            753

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.23  E-value=1.6e-11  Score=104.87  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             ccccceeeeccceeeEE-EeecCCcHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          108 DLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i-~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li---f~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      ..|+|+|+. .|+.+.+ +|++++||.+||++|+++.|++  +++|+|+   |+|+.|+|+.+|++|+|+++++|+|+..
T Consensus         6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred             ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence            358899996 7899999 9999999999999999999998  9999999   9999999999999999999999999765


Q ss_pred             cC
Q 007773          184 KS  185 (590)
Q Consensus       184 ks  185 (590)
                      ..
T Consensus        83 ~~   84 (90)
T 1v5t_A           83 RE   84 (90)
T ss_dssp             CS
T ss_pred             Cc
Confidence            44

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.23  E-value=2.6e-11  Score=105.39  Aligned_cols=75  Identities=19%  Similarity=0.212  Sum_probs=65.3

Q ss_pred             CCCCEEEEEEeC---CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc---c---cccCCccccccCcccccce
Q 007773           30 SNDSILIFLSVG---GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR---E---LARSNSRVRDYGLADGNVL  100 (590)
Q Consensus        30 ~~~sM~I~Vtl~---G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk---~---L~~D~~tL~dygI~~gstL  100 (590)
                      +.+.+.|+|+.+   +..++++|.+++||++||.+|+.++|+|+.+|+|+|.|+   .   |.+|+.+|.+|+|++|++|
T Consensus        11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I   90 (97)
T 2kj6_A           11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL   90 (97)
T ss_dssp             CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred             CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence            468899999543   247999999999999999999999999999999999984   3   4348999999999999999


Q ss_pred             eEEe
Q 007773          101 HLVL  104 (590)
Q Consensus       101 ~Lvl  104 (590)
                      ||+-
T Consensus        91 hlvd   94 (97)
T 2kj6_A           91 HIID   94 (97)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9863

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.23  E-value=9.2e-13  Score=123.55  Aligned_cols=72  Identities=33%  Similarity=0.479  Sum_probs=0.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |+|+|++.+|+++.++|++++||.+||++|++..|++  +++|+|+|+|+.|+|+.+|++|+|+++++|+|+++
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlr   72 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC--HHHEEEEECCEEccccCcHHHcCCCCCCEEEEEee
Confidence            7899999999999999999999999999999999988  99999999999999999999999999999999977

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.22  E-value=1.2e-11  Score=108.98  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=68.4

Q ss_pred             CCCEEEEE-EeCC---eEEEEEe--------cCC-CCHHHHHHHHHHhh--CCCccc-eEEEEcCcccccCCccccccCc
Q 007773           31 NDSILIFL-SVGG---SVIPMRV--------MES-DSIASVKLRIQSYN--GFFVKK-QKLVFEGRELARSNSRVRDYGL   94 (590)
Q Consensus        31 ~~sM~I~V-tl~G---~t~~l~V--------~~s-dTV~~LK~kIq~~~--Gip~~~-QrLvf~Gk~L~~D~~tL~dygI   94 (590)
                      ...|+|+| +.++   +++.++|        .++ +||.+||.+|+.++  |+|+++ |+|+|.|+.|. |+.+|++|+|
T Consensus        10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~-D~~tL~~y~i   88 (107)
T 1x1m_A           10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGI   88 (107)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTC
T ss_pred             CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECC-CCCcHHHcCC
Confidence            46699999 6777   7999994        454 99999999999999  999999 99999999997 8999999999


Q ss_pred             ccccceeEEeeec
Q 007773           95 ADGNVLHLVLRLS  107 (590)
Q Consensus        95 ~~gstL~LvlrLs  107 (590)
                      +++++|||+++..
T Consensus        89 ~~g~~i~lv~~~~  101 (107)
T 1x1m_A           89 QPGSTVHVLRKSW  101 (107)
T ss_dssp             CTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCC
Confidence            9999999998764

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.21  E-value=2.7e-11  Score=103.43  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=67.9

Q ss_pred             ccccceeeeccceeeEEEeecC-----CcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCC-CCcccccCCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGKVFEFHVERG-----RNVGYVKQQIAKKGREFVDLKNQELICDGEELED-QRLITDICKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s-----~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD-~~tL~dy~I~~gsvI~L~  181 (590)
                      ..|+|+|++ .|+.+.++|+++     .||.+||++|++..|++  +++|+|+|+|+.|+| ..+|++|+++++++|+|+
T Consensus         6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~   82 (92)
T 1wxv_A            6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLI   82 (92)
T ss_dssp             SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC--HHHEEEEECCeecCCCcccHHHCCCCCCCEEEEE
Confidence            358899998 588899999995     99999999999999988  999999999999998 668999999999999998


Q ss_pred             eecC
Q 007773          182 VRKS  185 (590)
Q Consensus       182 vrks  185 (590)
                      .++.
T Consensus        83 ~~~~   86 (92)
T 1wxv_A           83 GKKN   86 (92)
T ss_dssp             SCCS
T ss_pred             ecCC
Confidence            7654

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.6e-11  Score=108.24  Aligned_cols=88  Identities=11%  Similarity=0.148  Sum_probs=75.2

Q ss_pred             CCCEEEEEE--eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           31 NDSILIFLS--VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        31 ~~sM~I~Vt--l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      +..|.|.|.  .++..+++++.++.||.+||.+++.+.++|+++|+|+|+|+.|. |+.||.+|||++|.+|||+++-.+
T Consensus        13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLK-D~eTL~~~gIk~g~TIhLvi~s~~   91 (118)
T 2daf_A           13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILK-NNETLVQHGVKPQEIVQVEIFSTN   91 (118)
T ss_dssp             SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEEC-SSCCHHHHSCCSSCEEEEEEEESC
T ss_pred             CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcC-CcchHHHcCCCCCCEEEEEEecCC
Confidence            566777773  35789999999999999999999999999999999999999998 899999999999999999998765


Q ss_pred             cccceeeeccc
Q 007773          109 LQAITVTTVCG  119 (590)
Q Consensus       109 ~m~I~Vkt~~G  119 (590)
                      .-.-=||+..+
T Consensus        92 p~~~p~~~~~~  102 (118)
T 2daf_A           92 PDLYPVRRIDG  102 (118)
T ss_dssp             TTTSCCCCCCS
T ss_pred             CccCcceeccC
Confidence            54434444333

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.20  E-value=1.4e-12  Score=126.11  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=0.4

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      |+|+| +++|++++|+|++++||.+||.+|+..+|+|+++|+|+|+|++|+ |+.+|+     ++++|||+++++++.
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~Le-D~~TLs-----~~STLhLvlRLrGG~   72 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAP-NTELVT-----DDVTYYLSLKLLGGK   72 (189)
T ss_dssp             -----------------------------------------------------------------------------C
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECC-CCCccc-----CCCEEEEEEecCCCc
Confidence            89999 899999999999999999999999999999999999999999998 889998     899999999998874

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=6.8e-11  Score=105.58  Aligned_cols=73  Identities=8%  Similarity=0.125  Sum_probs=66.7

Q ss_pred             ccceee-eccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVT-TVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vk-t~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      +.|.|+ +..++.+.+.++++.||.+||++++...++|  ++.|+|+|+|+.|+|+.||.+|+|++|.+|||+++.
T Consensus        16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP--~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP--HSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC--TTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred             EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC--hHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence            455555 4567899999999999999999999999988  999999999999999999999999999999999874

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.17  E-value=3.9e-11  Score=102.02  Aligned_cols=67  Identities=13%  Similarity=0.072  Sum_probs=60.9

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE-------CCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC-------DGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif-------~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ...+.+.+.+++++||.+||++|+.++|+|  +++|+|+|       .|+.|+|+++|++|+|++|++|||+-+.+
T Consensus        12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P   85 (86)
T 4b6w_A           12 SRMRVPEKRYGLAQTIESIKENVFTHFATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP   85 (86)
T ss_dssp             CSCCEEEEEEETTSBHHHHHHHHHTTSCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEEcCccCcHHHHHHHHHHHHCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence            445667899999999999999999999998  99999997       48899999999999999999999987654

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=3.3e-11  Score=102.84  Aligned_cols=70  Identities=13%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             CCEEEEE-EeCCeEE--EE-EecCCCCHHHHHHHHHHh-hCCCccceEEEEc--CcccccCCccccccCcccccceeE
Q 007773           32 DSILIFL-SVGGSVI--PM-RVMESDSIASVKLRIQSY-NGFFVKKQKLVFE--GRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~--~l-~V~~sdTV~~LK~kIq~~-~Gip~~~QrLvf~--Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      ..|+|+| ++.|+.+  .+ +|.|++||.+||.+|++. .|+++++|+|+|.  |+.|. |+.+|++|+|+++++|++
T Consensus         9 ~~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~-D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A            9 KHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLK-DEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CCEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCC-TTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcC-CCCCHHHcCCCCCCEEEE
Confidence            4599999 8887664  68 999999999999999994 8999999999987  99997 899999999999999775

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.17  E-value=4e-11  Score=124.09  Aligned_cols=76  Identities=37%  Similarity=0.648  Sum_probs=70.2

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      ...|+|+| +++|+++.++|++++||.+||.+|+++.|+|+++|+|+|+|++|. |+.+|++|+|+++++|||++|++
T Consensus       231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~-D~~TLsdygI~~gstL~LvlRLr  307 (307)
T 3ai5_A          231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLR  307 (307)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECC-TTSBTGGGTCCTTCEEEEEC---
T ss_pred             CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecC-CCCCHHHcCCCCCCEEEEEEeCC
Confidence            57899999 678999999999999999999999999999999999999999997 89999999999999999998863

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.15  E-value=4.1e-11  Score=104.72  Aligned_cols=74  Identities=14%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE--CCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif--~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .|.+++++.+|+++.++|++++||.+||++|++++|+|  +++|+|+|  .|+ |+|+++|++|+|+.+++|||++..-
T Consensus         8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~   83 (100)
T 2dzm_A            8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL   83 (100)
T ss_dssp             CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred             ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence            47788888999999999999999999999999999998  99999996  666 9999999999999999999987644

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.3e-11  Score=102.81  Aligned_cols=70  Identities=16%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             cccceeeeccceee--EE-EeecCCcHHHHHHHHHHh-cCCCCCCCcEEEEEC--CEEcCCCCcccccCCCCCCEEEE
Q 007773          109 LQAITVTTVCGKVF--EF-HVERGRNVGYVKQQIAKK-GREFVDLKNQELICD--GEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~--~i-~Vd~s~TV~~LK~kI~~~-~gi~~~~~~Q~Lif~--Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      .|+|+|++..|+++  .+ +|++++||.+||++|+++ .+++  +++|+|+|.  |+.|+|+++|++|+|+++++|++
T Consensus        10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~--~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY--PARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF   85 (88)
T ss_dssp             CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC--TTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred             EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC--hHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence            38999999998876  48 999999999999999995 7887  999999976  99999999999999999999886

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.13  E-value=1.1e-10  Score=101.02  Aligned_cols=72  Identities=10%  Similarity=0.168  Sum_probs=62.9

Q ss_pred             ccccceeeeccc--eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC--CE---Ec-CCCCcccccCCCCCCEEE
Q 007773          108 DLQAITVTTVCG--KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD--GE---EL-EDQRLITDICKRNEAVIH  179 (590)
Q Consensus       108 d~m~I~Vkt~~G--k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~--Gk---~L-eD~~tL~dy~I~~gsvI~  179 (590)
                      +.++|+|++..+  +.++++|++++||.+||++|+.++|+|  +++|+|+|.  |+   .| +|.++|++|+|++|++|+
T Consensus        14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstih   91 (95)
T 2kjr_A           14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLH   91 (95)
T ss_dssp             CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEE
T ss_pred             CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEE
Confidence            446677776544  588999999999999999999999998  999999997  45   45 999999999999999999


Q ss_pred             EE
Q 007773          180 LL  181 (590)
Q Consensus       180 L~  181 (590)
                      |+
T Consensus        92 lv   93 (95)
T 2kjr_A           92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.13  E-value=4.3e-11  Score=126.92  Aligned_cols=79  Identities=23%  Similarity=0.468  Sum_probs=70.0

Q ss_pred             CCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHH---hhCCCccceEEEEcCcccccCCccccccCcccccce-eEE
Q 007773           29 LSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL-HLV  103 (590)
Q Consensus        29 ~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~---~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL-~Lv  103 (590)
                      .++..|+|+| +++|+++.|+|.+++||.+||.+|+.   +.|+++++|+|+|.|+.|. |+.+|.+|+|+++++| +|+
T Consensus         3 ~~~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~-D~~tL~dygI~~gstIv~lv   81 (368)
T 1oqy_A            3 LGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV   81 (368)
T ss_dssp             ---CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred             CCCceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecC-CcCCHHHcCCCCCCEEEEEE
Confidence            3567899999 78899999999999999999999999   6789999999999999997 8999999999999998 666


Q ss_pred             eeecc
Q 007773          104 LRLSD  108 (590)
Q Consensus       104 lrLsd  108 (590)
                      .+..+
T Consensus        82 ~k~~~   86 (368)
T 1oqy_A           82 TKTKA   86 (368)
T ss_dssp             ECCCS
T ss_pred             ecCCC
Confidence            66543

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.11  E-value=4.3e-11  Score=103.30  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=65.1

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      .|+|+|+ ..|+++.++|+++.||.+||++|++..|++  +++|+|+|+|+.|+| .+|.+|+|+++++|+|+.++
T Consensus        17 ~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip--~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~   88 (95)
T 1v86_A           17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred             eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence            3778888 468999999999999999999999999988  999999999999955 49999999999999997654

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.10  E-value=1.5e-10  Score=119.77  Aligned_cols=76  Identities=32%  Similarity=0.455  Sum_probs=72.0

Q ss_pred             ecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          106 LSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       106 Lsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      .++.|+|+||+.+|+.+.++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+++|++|+|+++++|+|++|
T Consensus       230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp--~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR  305 (307)
T 3ai5_A          230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR  305 (307)
T ss_dssp             SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC--GGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred             CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC--hHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence            35679999999999999999999999999999999999988  99999999999999999999999999999999876

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.10  E-value=1.1e-10  Score=123.80  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=67.7

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHH---hcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEE-EEEee
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAK---KGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI-HLLVR  183 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~---~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI-~L~vr  183 (590)
                      ..|+|+||+.+|+++.|+|++++||.+||++|+.   +.|++  +++|+|+|+|+.|+|+++|.+|+|+++++| +|+.|
T Consensus         6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k   83 (368)
T 1oqy_A            6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK   83 (368)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCC--hhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence            3599999999999999999999999999999999   56677  999999999999999999999999999999 55444

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.09  E-value=8.9e-12  Score=120.44  Aligned_cols=67  Identities=21%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |+|+|+|++|++++++|++++||.+||++|+..+|+|  +++|+|+|+|++|+|+++|+     ++++|||++|
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP--~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlR   67 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE--IDMMTLVNNGFIAPNTELVT-----DDVTYYLSLK   67 (189)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC--hhHEEEEecCeECCCCCccc-----CCCEEEEEEe
Confidence            7899999999999999999999999999999999998  99999999999999999998     8999999987

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.09  E-value=2.3e-10  Score=103.28  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=64.3

Q ss_pred             CCCEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC---c---ccccCCccccccCcccccceeE
Q 007773           31 NDSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---R---ELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        31 ~~sM~I~Vtl~G~--t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G---k---~L~~D~~tL~dygI~~gstL~L  102 (590)
                      ...|.|+|+..+.  .+.+++.+++||++||.+|+.++|+|+.+|+|+|.|   +   .|.+|+.+|.+|||++|++|||
T Consensus         4 ~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihv   83 (122)
T 1t0y_A            4 TEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHA   83 (122)
T ss_dssp             CCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEE
T ss_pred             CCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEE
Confidence            3568888855444  689999999999999999999999999999999987   4   3434899999999999999998


Q ss_pred             Ee
Q 007773          103 VL  104 (590)
Q Consensus       103 vl  104 (590)
                      +.
T Consensus        84 vd   85 (122)
T 1t0y_A           84 VD   85 (122)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.09  E-value=2e-10  Score=99.02  Aligned_cols=73  Identities=21%  Similarity=0.283  Sum_probs=63.2

Q ss_pred             CCEEEEEEeCCe--EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC---cc---cccCCccccccCcccccceeEE
Q 007773           32 DSILIFLSVGGS--VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG---RE---LARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        32 ~sM~I~Vtl~G~--t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G---k~---L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      ..+.|+|+..+.  .+.++|.+++||++||.+|+.++|+|+++|+|+|.|   +.   |.+|+.+|.+|||++|++||++
T Consensus         6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~   85 (95)
T 1v6e_A            6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence            348888865554  799999999999999999999999999999999987   43   4348999999999999999986


Q ss_pred             e
Q 007773          104 L  104 (590)
Q Consensus       104 l  104 (590)
                      -
T Consensus        86 d   86 (95)
T 1v6e_A           86 D   86 (95)
T ss_dssp             C
T ss_pred             E
Confidence            4

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.07  E-value=1e-10  Score=103.10  Aligned_cols=74  Identities=20%  Similarity=0.244  Sum_probs=66.0

Q ss_pred             CCCEEEEE-EeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCccceEEEEcCc-----------cc---ccCCccccccCc
Q 007773           31 NDSILIFL-SVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFEGR-----------EL---ARSNSRVRDYGL   94 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk-----------~L---~~D~~tL~dygI   94 (590)
                      .+.|+|+| +.+|.. .++|+ +++||.+||.+|+.++|+|+++|+|+|.|+           .|   .+|+.+|.+|||
T Consensus         5 ~~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi   83 (107)
T 1wf9_A            5 SSGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNL   83 (107)
T ss_dssp             CCCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCC
T ss_pred             CCeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCC
Confidence            35699999 788866 79999 999999999999999999999999999988           44   348999999999


Q ss_pred             ccccceeEEee
Q 007773           95 ADGNVLHLVLR  105 (590)
Q Consensus        95 ~~gstL~Lvlr  105 (590)
                      ++|++|||+..
T Consensus        84 ~~G~~L~l~~~   94 (107)
T 1wf9_A           84 AHGSMVYLAYE   94 (107)
T ss_dssp             CTTCEEECCCS
T ss_pred             CCCCEEEEEeC
Confidence            99999998765

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.06  E-value=3e-10  Score=98.14  Aligned_cols=78  Identities=13%  Similarity=0.298  Sum_probs=73.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .+.|+|+| +.+|+.+.+.|.+++++..|+.+++++.|+++.+|+|+|+|+.|. ++.|+++|+++++++|++++++.++
T Consensus         5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B            5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTCEEEEEECCEES
T ss_pred             CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence            56799999 789999999999999999999999999999999999999999997 8899999999999999999999877

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.03  E-value=2e-10  Score=101.24  Aligned_cols=75  Identities=15%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             ccceeeeccceeeEEEee-cCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE-----------E----cCCCCcccccCCC
Q 007773          110 QAITVTTVCGKVFEFHVE-RGRNVGYVKQQIAKKGREFVDLKNQELICDGE-----------E----LEDQRLITDICKR  173 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd-~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk-----------~----LeD~~tL~dy~I~  173 (590)
                      |.|.||+.+|+. .++|+ +++||.+||++|+.+++++  +++|+|+|.|+           .    ++|+++|++|+|+
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~   84 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA   84 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcC--cccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence            889999999976 79999 9999999999999999988  99999999888           4    5899999999999


Q ss_pred             CCCEEEEEeecCCC
Q 007773          174 NEAVIHLLVRKSAK  187 (590)
Q Consensus       174 ~gsvI~L~vrks~k  187 (590)
                      +|++|||+......
T Consensus        85 ~G~~L~l~~~~~~~   98 (107)
T 1wf9_A           85 HGSMVYLAYEGERT   98 (107)
T ss_dssp             TTCEEECCCSSCCC
T ss_pred             CCCEEEEEeCCCCc
Confidence            99999997664433

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.02  E-value=3.6e-10  Score=98.20  Aligned_cols=72  Identities=14%  Similarity=0.076  Sum_probs=61.2

Q ss_pred             ccceeeecc--ceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---EE----cCCCCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVC--GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~--Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k~----LeD~~tL~dy~I~~gsvI~L  180 (590)
                      +.|+|++..  ++.++++|++++||.+||++|+.++|+|  +++|+|+|.|   +.    ++|.++|++|+|++|++|||
T Consensus        15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl   92 (97)
T 2kj6_A           15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI   92 (97)
T ss_dssp             EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred             EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence            445555433  3578899999999999999999999998  9999999988   33    59999999999999999999


Q ss_pred             Eee
Q 007773          181 LVR  183 (590)
Q Consensus       181 ~vr  183 (590)
                      +-.
T Consensus        93 vd~   95 (97)
T 2kj6_A           93 IDL   95 (97)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            754

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.00  E-value=1.1e-09  Score=94.66  Aligned_cols=76  Identities=13%  Similarity=0.268  Sum_probs=71.6

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ..|+|.|++.+|+++.++|.+++++..|++.++++.|++  +++++|+|+|+.|.++.|..+|+++++++|+++++..
T Consensus         6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~   81 (94)
T 2io1_B            6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   81 (94)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred             CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            458899999999999999999999999999999999988  8999999999999999999999999999999998743

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.93  E-value=1.3e-09  Score=93.83  Aligned_cols=73  Identities=12%  Similarity=0.032  Sum_probs=61.3

Q ss_pred             ccceeeeccc-eeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---EE----cCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCG-KVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---EE----LEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~G-k~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k~----LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      +.|.|+.... ..+.++|++++||.+||++|+.+.|+|  +++|+|+|.|   +.    ++|.++|++|+|+++++||++
T Consensus         8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~   85 (95)
T 1v6e_A            8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI   85 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred             EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence            4455654333 268899999999999999999999998  9999999986   43    589999999999999999997


Q ss_pred             eec
Q 007773          182 VRK  184 (590)
Q Consensus       182 vrk  184 (590)
                      ...
T Consensus        86 d~~   88 (95)
T 1v6e_A           86 DHS   88 (95)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            543

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.90  E-value=1.4e-09  Score=113.42  Aligned_cols=75  Identities=17%  Similarity=0.317  Sum_probs=67.8

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE---EcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      .+.|.|+|+.+|++++++|++++||++||.+|++++|+|+++|+|+   |.|++|. |+.+|++|||++|++|+|+...
T Consensus         3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~-D~~~L~~~~ik~g~~l~L~gs~   80 (320)
T 3shq_A            3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAA-DNVKISALELKPNFKLMMVGST   80 (320)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCC-TTSBTTSSCCC--CEEEEECCC
T ss_pred             CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccC-ccccHHHcCCCCCCEEEEEccc
Confidence            4678999988999999999999999999999999999999999999   8999998 8999999999999999987644

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.90  E-value=3.3e-09  Score=91.10  Aligned_cols=78  Identities=13%  Similarity=0.298  Sum_probs=73.2

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .+.|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|++++.+.++
T Consensus         3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~gg   81 (91)
T 2io0_B            3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG   81 (91)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence            36799999 789999999999999999999999999999999999999999997 8899999999999999999988776

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=98.88  E-value=3.7e-09  Score=95.25  Aligned_cols=76  Identities=13%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             ccccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC---E---E-cCCCCcccccCCCCCCEEE
Q 007773          108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG---E---E-LEDQRLITDICKRNEAVIH  179 (590)
Q Consensus       108 d~m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G---k---~-LeD~~tL~dy~I~~gsvI~  179 (590)
                      +.+.|+|+...+. .+.+++++++||.+||++|+...|+|  +++|+|+|.|   +   . ++|.++|++|+|++|++||
T Consensus         5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ih   82 (122)
T 1t0y_A            5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIH   82 (122)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEE
T ss_pred             CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEE
Confidence            3456667654432 68899999999999999999999998  9999999977   3   3 4899999999999999999


Q ss_pred             EEeecC
Q 007773          180 LLVRKS  185 (590)
Q Consensus       180 L~vrks  185 (590)
                      |+...+
T Consensus        83 vvd~~p   88 (122)
T 1t0y_A           83 AVDVTG   88 (122)
T ss_dssp             EEECTT
T ss_pred             EEeCCC
Confidence            987543

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.87  E-value=7.1e-09  Score=88.99  Aligned_cols=77  Identities=13%  Similarity=0.267  Sum_probs=71.9

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ..|+|.|++.+|+.+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|..+|+++++++|+++++..+
T Consensus         4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~g   80 (91)
T 2io0_B            4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG   80 (91)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCC--STTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCC
T ss_pred             CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccC
Confidence            457899999999999999999999999999999999988  89999999999999999999999999999999887543

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.87  E-value=5.2e-09  Score=85.68  Aligned_cols=70  Identities=13%  Similarity=0.264  Sum_probs=67.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      |+|.|++.+|+.+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|.++|++++|++|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            6788999999999999999999999999999999988  899999999999999999999999999999985

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.85  E-value=6.7e-09  Score=89.41  Aligned_cols=78  Identities=13%  Similarity=0.298  Sum_probs=71.5

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|.|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|+|+.|. ++.|..+|++.+|++|++++++.|+
T Consensus        15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~dl~medgD~Idv~~~q~GG   93 (93)
T 2d07_B           15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTGG   93 (93)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC---
T ss_pred             CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeeccCC
Confidence            56799999 678999999999999999999999999999999999999999997 8999999999999999999987664

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.82  E-value=2.7e-09  Score=90.11  Aligned_cols=71  Identities=13%  Similarity=0.205  Sum_probs=61.4

Q ss_pred             EEEEE-EeCCeEEEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEc--Ccccc--cCCccccccCcccccceeEEee
Q 007773           34 ILIFL-SVGGSVIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFE--GRELA--RSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~--Gk~L~--~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      |+|+| +.+|+. .+. +++++||.+||.+|+++.|+++++|+|+|+  ++.|.  +++.+|++|||.+|++|++.-.
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            78999 777755 477 999999999999999999999999999997  47773  3678999999999999988643

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=98.82  E-value=3.6e-09  Score=89.30  Aligned_cols=71  Identities=11%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             ccceeeeccceeeEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC--CEEcC---CCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICD--GEELE---DQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~--Gk~Le---D~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |+|.||+.+|+.. ++ +++++||.+||++|+++.|++  +++|+|+|+  ++.|+   |+.+|++|++.+|++|++.-.
T Consensus         1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            7899999999654 77 999999999999999999988  899999997  47774   789999999999999997543

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.80  E-value=2e-08  Score=88.56  Aligned_cols=78  Identities=10%  Similarity=0.221  Sum_probs=71.3

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      ....|+|.| + +|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|++++++.|
T Consensus        28 ~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~-~~~Tp~dl~medgD~Idv~~~q~G  105 (106)
T 2eke_C           28 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIG  105 (106)
T ss_dssp             CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECC--
T ss_pred             CCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcC-CCCCHHHcCCCCCCEEEEEeeccc
Confidence            357799999 7 9999999999999999999999999999999999999999997 889999999999999999998765


Q ss_pred             c
Q 007773          109 L  109 (590)
Q Consensus       109 ~  109 (590)
                      +
T Consensus       106 G  106 (106)
T 2eke_C          106 G  106 (106)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.80  E-value=1.3e-08  Score=84.90  Aligned_cols=73  Identities=12%  Similarity=0.278  Sum_probs=68.5

Q ss_pred             CCCCEEEEE-EeCCe-EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           30 SNDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~-t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      ..+.|+|.| ..+|+ .+.+.|.+++++..|+...+++.|+++.+++|+|.|+.|. ++.|.++|++++|++|++.
T Consensus         4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLS-GKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECC-SCCCHHHHTCCTTCEEEEE
T ss_pred             CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence            467899999 78895 8999999999999999999999999999999999999997 8999999999999999975

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.80  E-value=1.1e-08  Score=83.82  Aligned_cols=69  Identities=12%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      |+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+++|+|+|+.|. ++.|.++|++++|++|+++
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~-~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence            78999 689999999999999999999999999999999999999999997 8899999999999999986

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.78  E-value=9.3e-09  Score=90.41  Aligned_cols=78  Identities=13%  Similarity=0.300  Sum_probs=73.7

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|.|+.|. ++.|..+|++.++++|++++++.++
T Consensus        22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~-~~~Tp~dl~medgD~Idv~~~q~GG  100 (104)
T 1wz0_A           22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVFQQQTSG  100 (104)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCC-TTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEeccCC
Confidence            57899999 789999999999999999999999999999999999999999997 8899999999999999999988765

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.78  E-value=1.7e-08  Score=84.24  Aligned_cols=72  Identities=11%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             ccccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      ..|.|.|++.+|+ .+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|..+|+++++++|++.
T Consensus         6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLS--GHKLSFFFDGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCT--TCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            4588999999996 89999999999999999999999988  899999999999999999999999999999974

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.77  E-value=2e-08  Score=86.36  Aligned_cols=75  Identities=13%  Similarity=0.265  Sum_probs=70.6

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|..+|+++++++|+++++.
T Consensus        16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~--~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q   90 (93)
T 2d07_B           16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ   90 (93)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred             CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence            457888999999999999999999999999999999998  899999999999999999999999999999998764

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.75  E-value=1.1e-08  Score=90.86  Aligned_cols=79  Identities=10%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ...|+|.| +.+|+.+.+.|.+++++..|+.+.+++.|+++.+|+|+|.|+.|. ++.|..+|++.++++|++++.+.++
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~-~~~Tp~dl~mEDgD~Idv~~~q~Gg  102 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPID-ETKTPEELGMEDDDVIDAMVEQTGG  102 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCC-SSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEEcccCc
Confidence            57799999 789999999999999999999999999999999999999999998 8899999999999999999998876


Q ss_pred             c
Q 007773          110 Q  110 (590)
Q Consensus       110 m  110 (590)
                      +
T Consensus       103 ~  103 (110)
T 2k8h_A          103 L  103 (110)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.74  E-value=8e-09  Score=107.71  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=66.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li---f~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      +.|+|+. +|+++.++|++++||.+||++|++++|+|  +++|+|+   |+|+.|+|..+|++|+|++|++|+|+-...+
T Consensus         6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~   82 (320)
T 3shq_A            6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVR--PERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA   82 (320)
T ss_dssp             EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcC--HHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence            6778884 79999999999999999999999999998  9999999   8999999999999999999999999866555


Q ss_pred             Cc
Q 007773          187 KV  188 (590)
Q Consensus       187 kv  188 (590)
                      .+
T Consensus        83 ~i   84 (320)
T 3shq_A           83 DI   84 (320)
T ss_dssp             --
T ss_pred             hh
Confidence            43

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.71  E-value=2.2e-08  Score=86.39  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             CCCEEEEEE----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcC-------cccccCCccccccCcccccc
Q 007773           31 NDSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEG-------RELARSNSRVRDYGLADGNV   99 (590)
Q Consensus        31 ~~sM~I~Vt----l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~G-------k~L~~D~~tL~dygI~~gst   99 (590)
                      ...+.|+|+    .+|..+..++.++.||.+||.+|+..+|+|+.+|+|+|.+       ..|.+|..+|.+|+|.+|++
T Consensus         7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~   86 (97)
T 1wjn_A            7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC   86 (97)
T ss_dssp             SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred             CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence            455777774    4678999999999999999999999999999999999874       23667899999999999999


Q ss_pred             eeEEee
Q 007773          100 LHLVLR  105 (590)
Q Consensus       100 L~Lvlr  105 (590)
                      ||+...
T Consensus        87 I~V~d~   92 (97)
T 1wjn_A           87 LLVRWS   92 (97)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            998753

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.69  E-value=4.3e-08  Score=86.46  Aligned_cols=74  Identities=11%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|+|.|++ +|+.+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|..+|+++++++|+++++.
T Consensus        30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~--~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q  103 (106)
T 2eke_C           30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ  103 (106)
T ss_dssp             SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred             CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC--cccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence            458899999 99999999999999999999999999988  899999999999999999999999999999998764

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.67  E-value=2.2e-08  Score=88.05  Aligned_cols=76  Identities=13%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ..|.|.|++.+|+.+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|..+|+++++++|+++++..
T Consensus        23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~--~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~   98 (104)
T 1wz0_A           23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT   98 (104)
T ss_dssp             CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCC--TTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred             CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence            457889999999999999999999999999999999998  8999999999999999999999999999999987643

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.62  E-value=2.9e-08  Score=88.07  Aligned_cols=78  Identities=15%  Similarity=0.275  Sum_probs=72.2

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ...|.|.|++.+|+.+.+.|.+++++..|++..+++.|++  +++++|+|+|+.|.+..|..+|+++++++|++++....
T Consensus        24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~--~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~G  101 (110)
T 2k8h_A           24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGIS--RNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTG  101 (110)
T ss_dssp             CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCC--SSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCC
T ss_pred             CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccC
Confidence            3458899999999999999999999999999999999998  89999999999999999999999999999999876543

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.51  E-value=2.5e-07  Score=79.73  Aligned_cols=73  Identities=12%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             ccceeee---ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECC-------EEc-CCCCcccccCCCCCCEE
Q 007773          110 QAITVTT---VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDG-------EEL-EDQRLITDICKRNEAVI  178 (590)
Q Consensus       110 m~I~Vkt---~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~G-------k~L-eD~~tL~dy~I~~gsvI  178 (590)
                      ++|.|+.   .+|+.+...+..+.||.+||.+|+..+|++  +..|+|+|.+       ..| +|.++|++|++++|++|
T Consensus        10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I   87 (97)
T 1wjn_A           10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL   87 (97)
T ss_dssp             EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred             EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCC--hhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEE
Confidence            4454543   467888999999999999999999999998  9999999873       235 78999999999999999


Q ss_pred             EEEeec
Q 007773          179 HLLVRK  184 (590)
Q Consensus       179 ~L~vrk  184 (590)
                      |+....
T Consensus        88 ~V~d~~   93 (97)
T 1wjn_A           88 LVRWSG   93 (97)
T ss_dssp             EEECCS
T ss_pred             EEEecC
Confidence            997643

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.25  E-value=3.8e-06  Score=74.94  Aligned_cols=75  Identities=12%  Similarity=0.237  Sum_probs=69.7

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      +.+.|.|++.+|+.+.+.|.++.++..|+...+++.|++  +++++++|+|+.|.+..|..+++++++++|++++..
T Consensus        39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~--~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC--TTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred             CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC--hhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence            347788888899999999999999999999999999987  999999999999999999999999999999998754

>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3

Probab=98.13  E-value=4.8e-06  Score=86.89  Aligned_cols=139  Identities=19%  Similarity=0.219  Sum_probs=88.9

Q ss_pred             cccCCCCCcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCccccc
Q 007773          273 IPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLH  352 (590)
Q Consensus       273 ~~~~~Gs~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~~~  352 (590)
                      .++..|++|.|||... +  ...|.|+..                        +     -..|+=||.|-+         
T Consensus        75 ~~s~~Gstgvff~~td-~--~~~VVK~s~------------------------~-----l~~E~l~s~LA~---------  113 (342)
T 1cja_A           75 ERSEKGTEGLFFVETE-S--GVFIVKRST------------------------N-----IESETFCSLLCM---------  113 (342)
T ss_dssp             EECCSTTSCEEEEEES-S--CEEEEECCT------------------------T-----HHHHHHHHHHHH---------
T ss_pred             EeccCCCCCeEEEEeC-C--CEEEEeCcH------------------------H-----HHHHHHHHHHHH---------
Confidence            4678999999999973 3  378889651                        1     378999998874         


Q ss_pred             ccccCCCCCCceEEEEecccCcc-C------CCCCCC--CCCCc-cceEEeecccccCCcccCCC----CCCChh---hh
Q 007773          353 DEERGFAGVPPTVMVRCLHKGFN-H------PNGYKH--DLENV-KIGSLQMFVENVGSCEEMGP----RAFPVD---EV  415 (590)
Q Consensus       353 ~~~~gf~~VP~T~lv~~~~~~f~-~------~~~~~~--~~~~~-k~GSlQ~fv~~~~~~~~~~~----~~f~~~---ev  415 (590)
                        .+|. -+|...+++...+-|. +      -+....  ..+.. ...=++.|+++..-. ++..    ..|..+   ++
T Consensus       114 --~LGl-piP~~Riv~~~~~E~~e~~~~L~~~~~~~~~l~~l~~~~~~l~meyv~G~~L~-e~~~~~~~~~f~~~~~k~L  189 (342)
T 1cja_A          114 --RLGL-HAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGITLN-KLTTTSAPEVLTKSTMQQL  189 (342)
T ss_dssp             --HHTC-CCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEEST-TCCSSSHHHHSCHHHHHHH
T ss_pred             --HhCC-CCCCeeEEeeCcHHHHHHHHHHHHhhhhhHHHHHhhcccceehhhhcCCCccc-cchhhhhhhhcCHHHHHhh
Confidence              6786 7899999987643220 0      000000  00001 122457888764311 1111    224333   34


Q ss_pred             hheeeeeeeeecCCCC------CC---cEEEeccCCCceEEEeeccCCcCCCC
Q 007773          416 HKISVLDIRLANTDRH------AG---NILVSKDEGGQIKLVPIDHGYCLPYS  459 (590)
Q Consensus       416 ~ki~ilD~~i~N~DR~------~g---NiLv~~~~~g~~~l~pIDhGl~fp~~  459 (590)
                      -||.+||+.++|.||-      .|   |||+..+ ++  ++++|||+.||-+.
T Consensus       190 G~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~~-n~--~~~~IDhn~af~~~  239 (342)
T 1cja_A          190 GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSER-GA--TVVPIDSKIIPLDA  239 (342)
T ss_dssp             HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESB-TT--CEEECSCCCCCCCS
T ss_pred             chhheehhhhcCCccCcccccCCCChhheEEeCC-CC--eEEEEcCCccccCC
Confidence            4799999999999997      34   6788875 23  69999999998865

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.11  E-value=8.4e-06  Score=79.40  Aligned_cols=78  Identities=12%  Similarity=0.214  Sum_probs=73.4

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .+.|+|.|..+|+.+.+.|.+++++..|+...+++.|++..+++++|+|+.|. ++.|.+++++.+|++|++++.+.++
T Consensus        27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~-~~~TP~dL~MEdgD~Idv~~~q~gg  104 (200)
T 3pge_A           27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG  104 (200)
T ss_dssp             CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred             CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcC-CCCCHHHcCCCCCCEEEEEeccCcC
Confidence            57799999779999999999999999999999999999999999999999998 8999999999999999999998654

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.09  E-value=7.6e-06  Score=73.00  Aligned_cols=74  Identities=18%  Similarity=0.338  Sum_probs=68.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      .+.|+|.| ..+|+.+.+.|.+++++..|+...+++.|+++.+++++|.|+.|. ++.|.+++++.+|++|++++.
T Consensus        38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~-~~~TP~dL~MEDgD~IdV~~~  112 (115)
T 3kyd_D           38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQE  112 (115)
T ss_dssp             -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECC-TTCCTTTTTCCTTCEEEEEEC
T ss_pred             CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECC-CCCCHHHcCCCCCCEEEEEee
Confidence            36789999 678999999999999999999999999999999999999999997 889999999999999999875

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.02  E-value=8.7e-06  Score=78.37  Aligned_cols=79  Identities=13%  Similarity=0.207  Sum_probs=74.2

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      .+.|.|.|..+|+.+.+.|.+++++..|+....++.|+++.+++++|+|+.|. ++.|..++++.+|++|++++...++.
T Consensus        55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~-~ddTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQ-ADQTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECC-SSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecC-CCCCHHHcCCCCCCEEEEEEeccCCC
Confidence            46688999778999999999999999999999999999999999999999998 89999999999999999999998774

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=97.88  E-value=2.7e-05  Score=75.83  Aligned_cols=77  Identities=10%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      ...++|.|+ .+|+.+.+.|.+++++..|++..+++.|++  +.+++++|+|+.|.+..|..++++++|++|++++..-+
T Consensus        27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~--~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g  103 (200)
T 3pge_A           27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG  103 (200)
T ss_dssp             CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred             CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCC--hhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence            344677776 489999999999999999999999999988  99999999999999999999999999999999987544

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=97.79  E-value=3.3e-05  Score=74.40  Aligned_cols=77  Identities=12%  Similarity=0.184  Sum_probs=69.7

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k  187 (590)
                      +.+.|.|+ .+|+.+.+.|.+++++..|++..+++.|++  +.+++++|+|+.|.+..|..+++++++++|++++..-..
T Consensus        56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~--~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG  132 (207)
T 3tix_A           56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG  132 (207)
T ss_dssp             CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred             CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCC--cccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            34677776 489999999999999999999999999988  899999999999999999999999999999998875544

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.70  E-value=5.2e-05  Score=65.25  Aligned_cols=60  Identities=13%  Similarity=0.232  Sum_probs=48.7

Q ss_pred             EEEEE-E-eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCccccc-CCccccccC
Q 007773           34 ILIFL-S-VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELAR-SNSRVRDYG   93 (590)
Q Consensus        34 M~I~V-t-l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~-D~~tL~dyg   93 (590)
                      .-|+| . ..+..+.+.|.+++||..+|++|++++|||+.+|+|+|.|+.|.= .+..-..|.
T Consensus        13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p   75 (94)
T 4efo_A           13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP   75 (94)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred             eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence            55667 4 466899999999999999999999999999999999999977541 344455554

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.69  E-value=5.5e-06  Score=80.75  Aligned_cols=79  Identities=11%  Similarity=0.204  Sum_probs=1.2

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      .+.|.|.|..+|+.+.+.|.+++.+..|+....++.|+++.+++++|+|+.|. ++.|.+++++++|++|++++...|+.
T Consensus        19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~-dddTPadL~MEDGDtIDV~leQ~GG~   97 (227)
T 3v7o_A           19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGL   97 (227)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecC-CCCCHHHcCCCCCCEEEEEecccCCc
Confidence            57799999778999999999999999999999999999999999999999998 89999999999999999999888774

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.59  E-value=3.8e-05  Score=64.10  Aligned_cols=71  Identities=10%  Similarity=0.087  Sum_probs=58.7

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE-----cCCCCcccccCCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-----LEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~-----LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      ..|.|-||+.+| ++.++|++++|+.+|+++|++..+++  .+.|.|+++-..     +.++.+|+++++++|+.|++.
T Consensus         3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            347788888877 67788999999999999999999987  677777765554     347889999999999999863

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.57  E-value=4.7e-05  Score=63.53  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=59.5

Q ss_pred             CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc-----cccCCccccccCcccccceeEE
Q 007773           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-----LARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-----L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      +.|.|.|.....++.+++++++|+.+|+.+|+++.++++..|.++++-..     +. ++.+|+++||+.|++|.+.
T Consensus         3 ~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~-~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A            3 ESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITAS-SSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSC-CCCTTTTTCCCTTCCEEC-
T ss_pred             CcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCC-CCCCHHHcCCCCCCEEEEe
Confidence            46888995555688899999999999999999999999999888766554     33 6789999999999999874

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=97.53  E-value=0.0037  Score=65.75  Aligned_cols=120  Identities=15%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhC----CCccceEEEEc------CcccccCCccccccCcccccceeE
Q 007773           33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNG----FFVKKQKLVFE------GRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~G----ip~~~QrLvf~------Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      ++.+.|.+.+.+-++.++|+.||.++-.+|.++..    .+.++--|...      |+=|. ++++|..|+++++..+..
T Consensus         3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~-~~~~l~~y~~~~~~~l~~   81 (371)
T 3ivf_A            3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLE-AGKALDYYMLRNGDTMEY   81 (371)
T ss_dssp             CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECC-TTSBGGGGTCCTTCEEEE
T ss_pred             cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEecc-CCCCHHHhCCCCCceeec
Confidence            45566655588999999999999999999988863    25666677763      23376 678999999999998876


Q ss_pred             EeeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEEC
Q 007773          103 VLRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICD  157 (590)
Q Consensus       103 vlrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~  157 (590)
                      ..+.   +.+.|...+|....+.|+.+.|+.++-+.|+...|+. ..+.-.|++.
T Consensus        82 ~~~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~-e~~~FgL~~~  132 (371)
T 3ivf_A           82 RKKQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRE  132 (371)
T ss_dssp             EECE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS-CGGGEEEECC
T ss_pred             cCce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC-CccccEEEEE
Confidence            5433   6788889999999999999999999999999999977 3667778764

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.45  E-value=0.00064  Score=56.27  Aligned_cols=71  Identities=8%  Similarity=0.113  Sum_probs=63.2

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCC-cEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLK-NQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~-~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      +.+.+++.....+.+.|.++.+|..|-..-+.+.+++  ++ ..+|.|.|..|+.+.++.||.+++|+.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~--~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKIS--FHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCC--CCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCC--cCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence            4455566666779999999999999999999999998  77 99999999999999999999999999999864

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.40  E-value=2.3e-05  Score=76.40  Aligned_cols=81  Identities=10%  Similarity=0.174  Sum_probs=0.8

Q ss_pred             eecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          105 RLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       105 rLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ...+.|.|.| +.+|+.+.+.|.++++...|++..+++.|++  +++++++|+|+.+.+..|..++++++|++|+++...
T Consensus        17 ~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs--~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ   93 (227)
T 3v7o_A           17 KPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ   93 (227)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC--ccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence            3345688888 7899999999999999999999999999988  899999999999999999999999999999999875


Q ss_pred             CCCc
Q 007773          185 SAKV  188 (590)
Q Consensus       185 s~kv  188 (590)
                      .+..
T Consensus        94 ~GG~   97 (227)
T 3v7o_A           94 IGGL   97 (227)
T ss_dssp             --CC
T ss_pred             cCCc
Confidence            5543

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.29  E-value=0.00087  Score=57.62  Aligned_cols=64  Identities=20%  Similarity=0.231  Sum_probs=51.1

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEc--CCCCcccccC-CCCCCEEEEEe
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEEL--EDQRLITDIC-KRNEAVIHLLV  182 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~L--eD~~tL~dy~-I~~gsvI~L~v  182 (590)
                      ..+..+.+.+++.+||..+|++|++++|++  +.+|+|+|.|+.|  +..+.-..|. -..+..|.|+-
T Consensus        21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s   87 (94)
T 4efo_A           21 QQMTAHKIYIHSYNTATIFHELVYKQTKII--SSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS   87 (94)
T ss_dssp             TTTEEEEEEEETTCBHHHHHHHHHHHHCCC--GGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred             ccceEEEEEeccchHHHHHHHHHHHHhCCC--HHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence            456788999999999999999999999998  9999999999775  5555556665 34556666544

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=97.22  E-value=0.0011  Score=57.43  Aligned_cols=72  Identities=13%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             ccccceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          108 DLQAITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       108 d~m~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      +.+.|.|+..+|+ .+.+.|.++.+...|...-+++.|+.  ++..+++|+|+.|....|..+++++++++|.+.
T Consensus        24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~--~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLS--GRKLSFFFDGTKLSGRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCS--SSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred             CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCC--cccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            3466777777784 78999999999999999999999987  889999999999999999999999999999864

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.15  E-value=0.002  Score=62.98  Aligned_cols=92  Identities=15%  Similarity=0.251  Sum_probs=79.8

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      +.+.|.|.|.-+++.+.+.|..++++..|+...+++.|++..+++++|.|+.+. ++.+..+..+.++++|.+.....++
T Consensus        18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~-~~~Tpk~L~~ed~d~I~~~~eq~Gg   96 (209)
T 3uf8_A           18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG   96 (209)
T ss_dssp             CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECC-TTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred             CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEecc-CCCChHHhhhcccccchhhcccccc
Confidence            468899999448888999999999999999999999999999999999999998 8999999999999999999988876


Q ss_pred             ccceeeeccceeeE
Q 007773          110 QAITVTTVCGKVFE  123 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~  123 (590)
                      .. ++.+.+|-.+.
T Consensus        97 ~t-~~~~~sGl~~~  109 (209)
T 3uf8_A           97 ST-VVTTESGLKYE  109 (209)
T ss_dssp             CC-CEECTTSCEEE
T ss_pred             cc-ccCCCCceEEE
Confidence            53 34455664443

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.12  E-value=0.0018  Score=63.36  Aligned_cols=82  Identities=10%  Similarity=0.179  Sum_probs=71.3

Q ss_pred             eeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       104 lrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      +...+.+.|.|++ +|+.+.+.|.++++...|++..+++.|++  +++++++|.|+.+.+..+..++.++++++|++...
T Consensus        16 ~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~--~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e   92 (209)
T 3uf8_A           16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (209)
T ss_dssp             --CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred             eCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCC--hheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence            3345557777876 78889999999999999999999999988  99999999999999999999999999999999877


Q ss_pred             cCCCc
Q 007773          184 KSAKV  188 (590)
Q Consensus       184 ks~kv  188 (590)
                      +-...
T Consensus        93 q~Gg~   97 (209)
T 3uf8_A           93 QIGGS   97 (209)
T ss_dssp             CTTCC
T ss_pred             ccccc
Confidence            55533

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.05  E-value=0.0022  Score=53.03  Aligned_cols=70  Identities=21%  Similarity=0.277  Sum_probs=61.1

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc-ceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      +.+.+ .....-+.+.|.++.+|.++-..-..+.||+++ ..+|.|.|..|. .+.++++|++.+++.|.+++
T Consensus        10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLd-p~~tp~DlemeD~D~IDvmL   81 (82)
T 3goe_A           10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLD-PNDQVQSTELEDEDQVSVVL   81 (82)
T ss_dssp             EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECC-TTSBGGGSSCCTTCEEEEEC
T ss_pred             HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccC-ccCChhhhCCcCCceeeeee
Confidence            44444 334456889999999999999999999999999 899999999997 99999999999999998875

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=96.95  E-value=0.0028  Score=54.79  Aligned_cols=72  Identities=11%  Similarity=0.289  Sum_probs=65.5

Q ss_pred             CCCEEEEE-EeCCe-EEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           31 NDSILIFL-SVGGS-VIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~V-tl~G~-t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      .+.|.|.| ..+|+ .+.+.|.++.++..|...-.++.|+++...+++|.|..|. .+.|..++++.+|++|.+.
T Consensus        23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~-~~~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLS-GRELPADLGMESGDLIEVW   96 (97)
T ss_dssp             CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECC-SCSCHHHHTCCTTEEEEEE
T ss_pred             CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcC-CCCCHHHcCCCCCCEEEEe
Confidence            56788888 56774 8999999999999999999999999999999999999997 8899999999999999764

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=96.92  E-value=0.00012  Score=77.03  Aligned_cols=83  Identities=11%  Similarity=0.192  Sum_probs=3.5

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      .+.|.|.|.-+|+.+.+.|.+++++..|+....++.|+++.+++++|+|+.|. ++.|.+++++++|++|+++....++|
T Consensus        19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~-~~~TP~~L~MEDgD~Idv~~~Q~g~~   97 (360)
T 3ix6_A           19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGGM   97 (360)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECC-CCCChHHcCCCccchhhhhhccCchH
Confidence            56788888337889999999999999999999999999999999999999998 88999999999999999999999998


Q ss_pred             ccee
Q 007773          111 AITV  114 (590)
Q Consensus       111 ~I~V  114 (590)
                      ..+.
T Consensus        98 ~~Yl  101 (360)
T 3ix6_A           98 RTYL  101 (360)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=96.83  E-value=0.004  Score=53.48  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=66.8

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +.|.|+ ..|..+.|.+.++.....|....+++.|+.  ++..++.|+|..+.+..|-.+++++++++|..++-+|
T Consensus        22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~--~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~~   94 (95)
T 2l76_A           22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVS--PSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTS   94 (95)
T ss_dssp             EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSC--GGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCC
T ss_pred             EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCC--hhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEecC
Confidence            566677 468899999999999999999999999988  9999999999999999999999999999999987665

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.78  E-value=0.0037  Score=53.19  Aligned_cols=76  Identities=12%  Similarity=0.013  Sum_probs=67.8

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      .++|.|+|-..+++..++.|.++.++.++-+.-++++|+.  +++..|.|+++.|+-...+.-.|+.+++.+.|+-..
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~--~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s   82 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS   82 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCC--hhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence            4678999999999999999999999999999999999987  899999999999998888998999999999997553

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=96.73  E-value=0.0099  Score=51.03  Aligned_cols=74  Identities=15%  Similarity=0.220  Sum_probs=68.6

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ..+.|.|.|.-.|....+.|..++....|...-.++.|+++...++.|.|..+. ++.|-++.++.++++|.+++
T Consensus        18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~-~~~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELS-PTATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECC-TTSCHHHHTCCSSCEEEEEE
T ss_pred             CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCC-CCCCHhHcCCCCCCEEEEEE
Confidence            356699999768899999999999999999999999999999999999999997 89999999999999998875

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=96.47  E-value=0.00045  Score=72.71  Aligned_cols=81  Identities=10%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             eeecccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          104 LRLSDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       104 lrLsd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      ....+.+.|.|++ +|+.+.+.|.++++...|++..+++.|++  ++++++.|+|+.+.++.|..++++++|++|+++..
T Consensus        16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~   92 (360)
T 3ix6_A           16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE   92 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC--cceEEEEECCeECCCCCChHHcCCCccchhhhhhc
Confidence            3345567788886 68889999999999999999999999987  99999999999999999999999999999999877


Q ss_pred             cCCC
Q 007773          184 KSAK  187 (590)
Q Consensus       184 ks~k  187 (590)
                      ..+.
T Consensus        93 Q~g~   96 (360)
T 3ix6_A           93 QIGG   96 (360)
T ss_dssp             ----
T ss_pred             cCch
Confidence            5544

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.32  E-value=0.0044  Score=56.12  Aligned_cols=70  Identities=13%  Similarity=0.135  Sum_probs=58.0

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE----------------------------------
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC----------------------------------  156 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif----------------------------------  156 (590)
                      .+.|+..+|...++.|+.+.+|..++..|+.+.|+. ..++..|..                                  
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~-n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL   91 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT-NHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL   91 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCC-CCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCC-CcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence            588999999999999999999999999999999987 233333432                                  


Q ss_pred             ----CCEEcCCCCcccccCCCCCCEEEEE
Q 007773          157 ----DGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       157 ----~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                          ++..|++.++|.++||.++++|.|.
T Consensus        92 ~~dd~~~WLD~srtL~EQGI~e~~tllLR  120 (128)
T 2kc2_A           92 HTDDELNWLDHGRTLREQGVEEHETLLLR  120 (128)
T ss_dssp             CCSSSEEEECSSSCHHHHTCCTTSEEEEE
T ss_pred             cccCCCCcccCCCcHHHcCCCCCCEEEEE
Confidence                2367888999999999999997653

>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB: 3akk_A* 3akl_A*

Probab=96.23  E-value=0.00082  Score=69.97  Aligned_cols=46  Identities=33%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             hhhhheeeeeeeeecCCCCCCcEEEeccCC-CceEEEee-ccCCcCCC
Q 007773          413 DEVHKISVLDIRLANTDRHAGNILVSKDEG-GQIKLVPI-DHGYCLPY  458 (590)
Q Consensus       413 ~ev~ki~ilD~~i~N~DR~~gNiLv~~~~~-g~~~l~pI-DhGl~fp~  458 (590)
                      +++-++.+||++|+|+|||++||=+-.+.+ |.+.|.|+ |||.++..
T Consensus       139 ~~~~~~~vfn~LIgN~D~H~kN~s~l~~~~tg~~~LAP~YD~~~s~~~  186 (325)
T 3akj_A          139 CFFWDMFVADTLLGNFDRHNGNWGFLRASNSKEYQIAPIFDCGSCLYP  186 (325)
T ss_dssp             HHHHHHHHHHHHHTCSCCCGGGCEEEEESSSSCEEECCBCCCTTSSCT
T ss_pred             HHHHHHHHhhHhhcCCCCCCcCeEEEEECCCCCEEecCcccccccccc
Confidence            457799999999999999999974433333 67899997 99988753

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=96.19  E-value=0.00079  Score=71.48  Aligned_cols=84  Identities=11%  Similarity=0.207  Sum_probs=0.0

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecccc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDLQ  110 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~m  110 (590)
                      .+.|.|.|.-+++.+.+.|..+++...|+....++.|+++.+++++|+|+.|. ++.|.+++++.+|++|++++...++.
T Consensus        28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~-~~~Tp~~l~med~d~i~~~~~q~gg~  106 (389)
T 4da1_A           28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQAPEDLDMEDNDIIEAHREQIGGE  106 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcC-CCCCHHHcCCCCCCEeeeeecccccc
Confidence            46678888327788999999999999999999999999999999999999998 89999999999999999999888776


Q ss_pred             cceee
Q 007773          111 AITVT  115 (590)
Q Consensus       111 ~I~Vk  115 (590)
                      ..+++
T Consensus       107 n~~~~  111 (389)
T 4da1_A          107 NLYFQ  111 (389)
T ss_dssp             -----
T ss_pred             cccee
Confidence            65554

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=95.72  E-value=0.015  Score=49.41  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=65.4

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...|.+.| ..+++..++.|.|+.++.+|-+..-+++|+.+++-.|.|+++.|. -+..++-.|+-+|+.+.|+..
T Consensus         7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A            7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECS
T ss_pred             CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEc
Confidence            45678888 678999999999999999999999999999999889999999996 789999999999999998754

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=95.70  E-value=0.0018  Score=68.75  Aligned_cols=77  Identities=10%  Similarity=0.185  Sum_probs=0.0

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k  187 (590)
                      +.+.|.|++ +|..+.+.|.++++...|++..+++.|++  +.+++++|+|+.|.+..|..+++++++++|++++..-..
T Consensus        29 ~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg  105 (389)
T 4da1_A           29 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG  105 (389)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCC--cceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence            456777776 78888999999999999999999999988  999999999999999999999999999999998765443

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=95.64  E-value=0.02  Score=47.88  Aligned_cols=70  Identities=17%  Similarity=0.288  Sum_probs=56.6

Q ss_pred             CCEEEEEEe---CCeEEEEEecCCCCHHHHHHHHHHhhCCCcc-----ceEEEEcCcccccCCccccccCcccccceeE
Q 007773           32 DSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVK-----KQKLVFEGRELARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        32 ~sM~I~Vtl---~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~-----~QrLvf~Gk~L~~D~~tL~dygI~~gstL~L  102 (590)
                      ..|.|++.+   .++++.+++....||..|+..+.+..+++..     ..++.-.+..|. ++.+|++|+|.+|+.+.+
T Consensus         3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~-~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFS-GECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEE-TTSBTGGGTCCTTCEEEE
T ss_pred             cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEc-CCCEEeeCCcCCCCEEEE
Confidence            345666654   7899999999999999999999999987652     234555677787 889999999999998864

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=95.38  E-value=0.0098  Score=53.85  Aligned_cols=70  Identities=23%  Similarity=0.271  Sum_probs=56.0

Q ss_pred             EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCcc-------------------------------------ceEEE
Q 007773           35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVK-------------------------------------KQKLV   76 (590)
Q Consensus        35 ~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~-------------------------------------~QrLv   76 (590)
                      .+.| .++|+..++.|+.+.||.+++..|..+.||+..                                     +|+|-
T Consensus        13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~   92 (128)
T 2kc2_A           13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH   92 (128)
T ss_dssp             EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred             cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence            5777 679999999999999999999999999999855                                     34442


Q ss_pred             E--cCcccccCCccccccCcccccceeEEee
Q 007773           77 F--EGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        77 f--~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      .  .+.-|. ++.+|.++||.++++|.|.-+
T Consensus        93 ~dd~~~WLD-~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           93 TDDELNWLD-HGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             CSSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred             ccCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence            2  113354 789999999999999877543

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=95.22  E-value=0.044  Score=45.72  Aligned_cols=64  Identities=11%  Similarity=0.082  Sum_probs=55.7

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCC---CcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDL---KNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~---~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      ..++++-+.+....||..|++-+.+.+++..+.   .+.++.-.+..|.++..|.||++.+|+.|.+
T Consensus        14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            478899999999999999999999999976432   2456777899999999999999999999875

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=94.36  E-value=0.095  Score=47.82  Aligned_cols=78  Identities=18%  Similarity=0.362  Sum_probs=53.6

Q ss_pred             CCCEEEEE-EeC------CeEEEEEecCCCCHHHHHHHHHHh--hCCCccc------eEEEE----cCcc-cccCC----
Q 007773           31 NDSILIFL-SVG------GSVIPMRVMESDSIASVKLRIQSY--NGFFVKK------QKLVF----EGRE-LARSN----   86 (590)
Q Consensus        31 ~~sM~I~V-tl~------G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~~------QrLvf----~Gk~-L~~D~----   86 (590)
                      -.++.++| ...      ...+++.|...|||.++|+||-..  .|+|..+      .-|-+    .|+. |.+.+    
T Consensus        22 y~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~  101 (138)
T 2r2o_A           22 YRPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSE  101 (138)
T ss_dssp             CCEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred             eEEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccc
Confidence            46788887 321      357999999999999999999887  4666543      23444    1332 44111    


Q ss_pred             --------ccccccCcccccceeEEeeecc
Q 007773           87 --------SRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        87 --------~tL~dygI~~gstL~LvlrLsd  108 (590)
                              .||+.|+|.+|+++-|+.+.+.
T Consensus       102 ~~~~wkrLNTL~HY~V~Dga~l~l~~~~~~  131 (138)
T 2r2o_A          102 VQGLWRRLNTLQHYKVPDGATVALVPCLTK  131 (138)
T ss_dssp             EETTEEECCBHHHHTCCTTCEEEEEEC---
T ss_pred             ccCCceeecchhccCCCCCCEEEEEECCCc
Confidence                    3899999999999999887654

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=94.08  E-value=0.22  Score=43.46  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=60.6

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeEEe
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ....+|.| ..+|+.+.-+...++||.+|..-|....+.+.....|+  |-.+.+.  +.+.+|++.|+.+..+|.+..
T Consensus        11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            56788999 56889999999999999999999999987766666676  5577776  347899999999888877654

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=93.69  E-value=0.23  Score=41.07  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=59.6

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeEEe
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ....+|.| ..+|+.+.-+...++||.+|..-|.. .+.+.....|+  |-.+.+.  +.+.+|.+.|+.+..+|.+-.
T Consensus         5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~   82 (84)
T 3qx1_A            5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA   82 (84)
T ss_dssp             CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence            46678888 56888888899999999999999998 67777777887  4477784  457899999999988887643

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=93.41  E-value=0.15  Score=44.94  Aligned_cols=75  Identities=23%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             CCCEEEEE-Ee--CCeEEEEEecCCCCHHHHHHHHHHh--hCCCcc------ceEEEEc----CcccccCC---------
Q 007773           31 NDSILIFL-SV--GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVFE----GRELARSN---------   86 (590)
Q Consensus        31 ~~sM~I~V-tl--~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf~----Gk~L~~D~---------   86 (590)
                      ..++.++| ..  ++..+.+.|...|||.++|+||-..  .|+|..      ...|-+.    |+.|.+.+         
T Consensus         9 ~~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w   88 (111)
T 4e71_A            9 YAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRW   88 (111)
T ss_dssp             CCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred             eEEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcc
Confidence            35677777 32  3467899999999999999999876  466644      3346652    44454211         


Q ss_pred             ---ccccccCcccccceeEEee
Q 007773           87 ---SRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        87 ---~tL~dygI~~gstL~Lvlr  105 (590)
                         .||+.|+|.+|+++-|+.+
T Consensus        89 krLNTL~HY~V~dgatl~l~~~  110 (111)
T 4e71_A           89 KRVNTLMHYNVRDGATLILSKV  110 (111)
T ss_dssp             CCCCBHHHHTCCTTCEEEEEEC
T ss_pred             eEecchhhcCCCCCCEEEEEeC
Confidence               4789999999999988754

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=92.68  E-value=0.31  Score=40.29  Aligned_cols=69  Identities=10%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L---eD~~tL~dy~I~~gsvI~L~  181 (590)
                      .+|.||..+|+.+.-....++||.+|..-|.. .+..  .....|+  |-.+.|   +...+|.+.++.+.++|.+-
T Consensus         8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A            8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCC--TTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCC--CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            34566666777776677789999999999988 4444  6778888  557888   45789999999999998863

>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*

Probab=91.36  E-value=1.3  Score=50.40  Aligned_cols=140  Identities=20%  Similarity=0.320  Sum_probs=81.0

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE  491 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~  491 (590)
                      .+--.+|.=|++.=.|||.+|||+..  +|+  ++-||=|.||-...   .      |. ..||  +++.++.+-....+
T Consensus       537 SlA~~Svv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f~~~p---~------pe-~VPFRLT~~mv~~mG~~g~e  602 (696)
T 2x6h_A          537 SCAGYCVITYLLGVGDRHLDNLLLTT--NGK--LFHIDFGYILGRDP---K------PM-PPPMKLSKEMVEAMGGISSE  602 (696)
T ss_dssp             HHHHHHHHHHHHTCCCCCTTTEEECT--TSC--EEECCCCSCTTCCS---S------SC-CCSSCCCHHHHHHTTSSSSH
T ss_pred             HHHHHHHHHHHccCCCCCCcceEEeC--CCC--EEEEeehhhhccCC---C------Cc-CCCeecCHHHHHHhCCCCcc
Confidence            34557788899999999999999985  487  99999999996431   1      11 4554  55555444332221


Q ss_pred             HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCC-CchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773          492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKD-ESVIEQIVREAQDAVLPGTSEDGFLES  570 (590)
Q Consensus       492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~  570 (590)
                       -...++..    -+..+++||-..-.          +-.+-++|-+..+.. .+.=+..+..-++.+.++.+|+.-.+.
T Consensus       603 -g~~~Fr~~----c~~~~~~LR~~~~~----------il~ll~lml~~~lp~~~~~~~~~i~~l~~rf~l~lseeea~~~  667 (696)
T 2x6h_A          603 -HHHEFRKQ----CYTAYLHLRRHANV----------MLNLFSLMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQH  667 (696)
T ss_dssp             -HHHHHHHH----HHHHHHHHHHTHHH----------HHHHHHHTTTCCCTTTTSSGGGHHHHHHHHHTTTSCHHHHHHH
T ss_pred             -cHHHHHHH----HHHHHHHHHhCHHH----------HHHHHHHHHcCCCCccccCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence             11123321    02223333322211          223344555554321 121233445556667788899988888


Q ss_pred             HHHHHHHHhhhc
Q 007773          571 VASIMDRHLDDL  582 (590)
Q Consensus       571 ~~~~~~~~~~~~  582 (590)
                      |.++++.-++.+
T Consensus       668 ~~~lI~~S~~s~  679 (696)
T 2x6h_A          668 LQSLLDVSITAV  679 (696)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh
Confidence            888888777654

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=90.75  E-value=0.79  Score=40.95  Aligned_cols=72  Identities=17%  Similarity=0.274  Sum_probs=58.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCccc--ccCCccccccCcccccceeEE
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGREL--ARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L--~~D~~tL~dygI~~gstL~Lv  103 (590)
                      ....+|.| ..+|..+.-+...++||.+|..-|... +.+.....|+  |-.+.|  .+.+.+|.+.|+....+|.+.
T Consensus        41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            56688888 558889999999999999999999887 7766667777  558888  445799999999988887664

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=89.67  E-value=0.92  Score=40.30  Aligned_cols=76  Identities=21%  Similarity=0.409  Sum_probs=52.2

Q ss_pred             CCCEEEEE-Ee---CCeEEEEEecCCCCHHHHHHHHHHh--hCCCcc------ceEEEE-cCc----cccc--------C
Q 007773           31 NDSILIFL-SV---GGSVIPMRVMESDSIASVKLRIQSY--NGFFVK------KQKLVF-EGR----ELAR--------S   85 (590)
Q Consensus        31 ~~sM~I~V-tl---~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~~------~QrLvf-~Gk----~L~~--------D   85 (590)
                      ..+|.++| ..   ....+.+.|...|||.++|+||-..  .|+|..      ...|-+ .|.    .|.+        +
T Consensus        11 ~~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~   90 (117)
T 4e74_A           11 YKTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIEN   90 (117)
T ss_dssp             CCEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred             cEEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecC
Confidence            35677777 32   2346899999999999999999876  466654      345665 232    2332        1


Q ss_pred             C----ccccccCcccccceeEEeee
Q 007773           86 N----SRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        86 ~----~tL~dygI~~gstL~LvlrL  106 (590)
                      .    .||+.|+|.+|+++-|+.+.
T Consensus        91 ~wkrLNTL~HY~V~dgatl~l~~~~  115 (117)
T 4e74_A           91 DWKRLNTLAHYQVPDGSVVALVSKQ  115 (117)
T ss_dssp             -CCCCCBHHHHTCCTTCEEEEEECC
T ss_pred             cceEeccccccCCCCCCEEEEEeCC
Confidence            1    47889999999999887654

>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A

Probab=89.07  E-value=1.5  Score=49.27  Aligned_cols=141  Identities=22%  Similarity=0.298  Sum_probs=80.3

Q ss_pred             hhhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHccChH
Q 007773          414 EVHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINALDAE  491 (590)
Q Consensus       414 ev~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~Ld~~  491 (590)
                      .+.-.+|.=|++.=.|||.+|||+..  +|+  ++-||=|+||-..   +.      | -..||  +++.++.+-....+
T Consensus       463 S~A~ySvv~YILGigDRH~~NILld~--tG~--v~HIDFG~~f~~~---p~------p-e~vPFRLT~~mv~~mG~~~~e  528 (614)
T 3ls8_A          463 SCAGYCVITYILGVGDRHLDNLLLTK--TGK--LFHIDFGYILGRD---PK------P-LPPPMKLNKEMVEGMGGTQSE  528 (614)
T ss_dssp             HHHHHHHHHHHHTCCCCCTTSEEECT--TSC--EEECCCSSCTTCC---SS------S-SCCSSCCCHHHHHHTTCTTSH
T ss_pred             HHHHHhHhheeeeccCCCCcceeEcC--CCC--EeeeehHHhhccC---CC------C-CCCCeecCHHHHHHhCCCCCc
Confidence            34557788899999999999999975  487  9999999999643   11      1 14555  45544433322211


Q ss_pred             HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCC-CchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773          492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKD-ESVIEQIVREAQDAVLPGTSEDGFLES  570 (590)
Q Consensus       492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~-~s~le~~~~~a~~~~~~~~~~~~f~~~  570 (590)
                       ....++..    -+..+.+||-..-+          .-.+.+||.-..+.. .+.-+..+..-++...++.+|+.-.+.
T Consensus       529 -~f~~Fr~~----c~~~~~~LR~~~~~----------il~l~~lM~~s~lp~~~~~~~~~i~~l~~rf~l~lse~ea~~~  593 (614)
T 3ls8_A          529 -QYQEFRKQ----CYTAFLHLRRYSNL----------ILNLFSLMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHY  593 (614)
T ss_dssp             -HHHHHHHH----HHHHHHHHHHTHHH----------HHHHHHTTTTSCCHHHHTSGGGHHHHHHHHTTTTSCHHHHHHH
T ss_pred             -hHHHHHHH----HHHHHHHHHHCHHH----------HHHHHHHHhcCCCCccccChHHHHHHHHHHcCCCCCHHHHHHH
Confidence             11223321    12233333332222          222333444322110 011123455666777888999988888


Q ss_pred             HHHHHHHHhhhcC
Q 007773          571 VASIMDRHLDDLT  583 (590)
Q Consensus       571 ~~~~~~~~~~~~~  583 (590)
                      +..+++.-++-+.
T Consensus       594 ~~~lI~~S~~s~~  606 (614)
T 3ls8_A          594 MQSLIDESVHALF  606 (614)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhH
Confidence            8888888777654

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=88.96  E-value=1.1  Score=40.32  Aligned_cols=75  Identities=17%  Similarity=0.260  Sum_probs=51.1

Q ss_pred             CEEEEE-E--eCCeEEEEEecCCCCHHHHHHHHHHh--hCCCc------cceEEEE-cC---cc-ccc--------CC--
Q 007773           33 SILIFL-S--VGGSVIPMRVMESDSIASVKLRIQSY--NGFFV------KKQKLVF-EG---RE-LAR--------SN--   86 (590)
Q Consensus        33 sM~I~V-t--l~G~t~~l~V~~sdTV~~LK~kIq~~--~Gip~------~~QrLvf-~G---k~-L~~--------D~--   86 (590)
                      ++.++| .  .++..+++.|...|||.++|+||-..  .|+|.      +...|-+ .|   +. |.+        +.  
T Consensus         4 ~ltl~~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~k   83 (127)
T 3h6n_A            4 PRNLNVSFQGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRK   83 (127)
T ss_dssp             EEEEEEEEETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEE
T ss_pred             EEEEEEEecCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCcee
Confidence            344555 2  13456889999999999999999876  45554      4456665 23   22 431        11  


Q ss_pred             --ccccccCcccccceeEEeeec
Q 007773           87 --SRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        87 --~tL~dygI~~gstL~LvlrLs  107 (590)
                        .||+.|+|.+|+++-|+.+..
T Consensus        84 rLNTL~HY~V~dgatv~l~~~~~  106 (127)
T 3h6n_A           84 KLNTLAHYKIPEGASLAMSLIDK  106 (127)
T ss_dssp             CCCBTTTTTCCTTCEEEEEECC-
T ss_pred             EeccccccCCCCCCEEEEEEccc
Confidence              478899999999998886643

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.68  E-value=1.1  Score=37.55  Aligned_cols=66  Identities=17%  Similarity=0.139  Sum_probs=56.6

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE---cCcccccCCccccccCccc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF---EGRELARSNSRVRDYGLAD   96 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf---~Gk~L~~D~~tL~dygI~~   96 (590)
                      +..+.++.| ....+...++|+|..++..+--.|-++..+.+..-.|.-   .+.+|. -+.+|.||||++
T Consensus         7 PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE   76 (91)
T 2daj_A            7 GEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE   76 (91)
T ss_dssp             CCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred             CccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence            478999999 555578899999999999999999999999998877763   356675 789999999987

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=88.66  E-value=1.3  Score=38.47  Aligned_cols=73  Identities=21%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc-cCCccccccCcccccceeEEe
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~-~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ....+|.| ..+|+.+.-+...++||.+|..-|... +.......|+  |-.+.|. +.+.+|++.|+....+|.+..
T Consensus        21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            46788888 568888888999999999999999965 4445556666  5577886 357999999999888886643

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=88.49  E-value=1.1  Score=38.88  Aligned_cols=71  Identities=18%  Similarity=0.113  Sum_probs=54.8

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC---CCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE---DQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le---D~~tL~dy~I~~gsvI~L~v  182 (590)
                      .+|.||..+|+.+.-....++||.+|.+-|....+..  .....|+  |-.+.+.   ...+|.+.++.+.++|++..
T Consensus        14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~--~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~   89 (109)
T 2dzk_A           14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT--YGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP   89 (109)
T ss_dssp             EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS--SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC--CCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence            4566666677777777789999999999998886644  4556666  5677775   37899999999998888754

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=88.17  E-value=1.6  Score=42.44  Aligned_cols=66  Identities=23%  Similarity=0.285  Sum_probs=52.7

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCcc-ceEEEE-c----CcccccCCccccccCcccccceeEEeeeccc
Q 007773           44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      ..++.++..+||.+|+.++....+++.+ +-||-. .    ...|.+.+.+|.+++|.++..|.+-++..|+
T Consensus       141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            4677889999999999999999999986 567652 2    2246644689999999999999888876664

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=87.95  E-value=1.3  Score=43.53  Aligned_cols=66  Identities=20%  Similarity=0.288  Sum_probs=54.1

Q ss_pred             EEEEEecCCCCHHHHHHHHHHhhCCCcc-ceEEEE-c----CcccccCCccccccCcccccceeEEeeeccc
Q 007773           44 VIPMRVMESDSIASVKLRIQSYNGFFVK-KQKLVF-E----GRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        44 t~~l~V~~sdTV~~LK~kIq~~~Gip~~-~QrLvf-~----Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      .+++.++..+||.+|+.++....+++.+ +-||-. .    -..|.+.+.+|.++++.++..|.+-++..|+
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            4567789999999999999999999987 578774 3    2246645699999999999999888887665

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=87.79  E-value=2  Score=50.67  Aligned_cols=143  Identities=22%  Similarity=0.304  Sum_probs=79.1

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHcc--Ch
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINAL--DA  490 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~L--d~  490 (590)
                      +--.+|.=|++.=.|||.+|||+..  +|+  ++-||=|.||-..-.  .|   ..---..||  +++.++.+..-  ..
T Consensus       775 ~A~~Svv~YILGlgDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~l---~~~pE~VPFRLT~~mv~~mg~g~~~~  845 (940)
T 2wxf_A          775 CAGYCVATYVLGIGDRHSDNIMIRE--SGQ--LFHIDFGHFLGNFKT--KF---GINRERVPFILTYDFVHVIQQGKTNN  845 (940)
T ss_dssp             HHHHHHHHHHHTCCCCCGGGEEEET--TSC--EEECCCCCCTTCC--------------CCCCCCCHHHHHHHTTTCSCC
T ss_pred             HHHHHHHHHHhccCCCCcccEEEec--CCC--EEEEeehhhhccccc--cc---CCCCCCCCccCCHHHHHHHcCCCCCC
Confidence            4456778888888999999999986  487  999999999954211  11   000123454  56655555421  11


Q ss_pred             HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHH
Q 007773          491 EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLES  570 (590)
Q Consensus       491 ~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~  570 (590)
                      +.....++.       -|..++++..    +-   .-.+-.+-++|-+..+-.-+.- .-++.-++.+.++.+|+.-.+.
T Consensus       846 s~~~g~Fr~-------~c~~~~~~LR----~~---~~~ll~ll~lml~~~lp~~~~~-~~i~~l~~r~~l~~se~ea~~~  910 (940)
T 2wxf_A          846 SEKFERFRG-------YCERAYTILR----RH---GLLFLHLFALMRAAGLPELSCS-KDIQYLKDSLALGKTEEEALKH  910 (940)
T ss_dssp             HHHHHHHHH-------HHHHHHHHHH----HT---HHHHHHHHHHHGGGCCTTSCSH-HHHHHHHHHHTTTSCHHHHHHH
T ss_pred             CcchhhHHH-------HHHHHHHHHH----hH---HHHHHHHHHHHhCCCCcccCch-HHHHHHHHHhCCCCCHHHHHHH
Confidence            222233332       2333333211    11   1123334455556543322211 2244445667788899888888


Q ss_pred             HHHHHHHHhhh
Q 007773          571 VASIMDRHLDD  581 (590)
Q Consensus       571 ~~~~~~~~~~~  581 (590)
                      +.++++.-+.+
T Consensus       911 ~~~~i~~s~~~  921 (940)
T 2wxf_A          911 FRVKFNEALRE  921 (940)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            88888887743

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=87.58  E-value=2  Score=37.74  Aligned_cols=64  Identities=16%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             ceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCEEcCC-------------CCcccccCCCCC
Q 007773          119 GKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEELED-------------QRLITDICKRNE  175 (590)
Q Consensus       119 Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk~LeD-------------~~tL~dy~I~~g  175 (590)
                      +..+.+.|-.++||..+|+||-...  |.|.    .+++..|-+    .|+.|.|             =+||..|+|.+|
T Consensus        23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  102 (111)
T 4e71_A           23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG  102 (111)
T ss_dssp             CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred             CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence            4568888999999999999997764  3332    246777776    3455654             257889999999


Q ss_pred             CEEEEEe
Q 007773          176 AVIHLLV  182 (590)
Q Consensus       176 svI~L~v  182 (590)
                      +++-|+-
T Consensus       103 atl~l~~  109 (111)
T 4e71_A          103 ATLILSK  109 (111)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            9998864

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=87.14  E-value=1.3  Score=39.43  Aligned_cols=70  Identities=9%  Similarity=0.011  Sum_probs=55.6

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc--C-CCCcccccCCCCCCEEEEE
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL--E-DQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L--e-D~~tL~dy~I~~gsvI~L~  181 (590)
                      ..+|.||..+|..+.-....++||.+|..-|... +..  .....|+  |-.+.|  + ...+|.+.++.+.++|.+.
T Consensus        43 ~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~--~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~  117 (124)
T 1wj4_A           43 KAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYP--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ  117 (124)
T ss_dssp             EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCC--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred             cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCC--CCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence            3567777778887887888999999999999876 544  5677777  567888  3 3799999999888888764

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=86.37  E-value=2.1  Score=39.00  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=47.8

Q ss_pred             eeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCE-EcCCC-------------CcccccCCCCC
Q 007773          120 KVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGE-ELEDQ-------------RLITDICKRNE  175 (590)
Q Consensus       120 k~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk-~LeD~-------------~tL~dy~I~~g  175 (590)
                      ..+++.|=.++||.++|+||-...  |.|-    .+++.-|-+    .|+ .|.|.             +||..|+|.+|
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            568899999999999999998775  3321    245556665    343 36553             48999999999


Q ss_pred             CEEEEEeecC
Q 007773          176 AVIHLLVRKS  185 (590)
Q Consensus       176 svI~L~vrks  185 (590)
                      +++.|+-+.+
T Consensus       121 a~l~l~~~~~  130 (138)
T 2r2o_A          121 ATVALVPCLT  130 (138)
T ss_dssp             CEEEEEEC--
T ss_pred             CEEEEEECCC
Confidence            9999977655

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=85.31  E-value=2  Score=44.67  Aligned_cols=64  Identities=17%  Similarity=0.040  Sum_probs=53.6

Q ss_pred             ceeeEEEeecCCcHHHHHHHHHHhcCC--CCCCCcEEEEE------CCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          119 GKVFEFHVERGRNVGYVKQQIAKKGRE--FVDLKNQELIC------DGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       119 Gk~~~i~Vd~s~TV~~LK~kI~~~~gi--~~~~~~Q~Lif------~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      +-+-++..+++.||.++-.+|.++...  ..+.++.-|..      +|..|++.++|+.|++++++.|+..-
T Consensus        12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~   83 (371)
T 3ivf_A           12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK   83 (371)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred             ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence            455678888999999999999988752  23478889988      66889999999999999999998753

>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}

Probab=84.59  E-value=8.1  Score=42.52  Aligned_cols=115  Identities=11%  Similarity=0.024  Sum_probs=74.5

Q ss_pred             CCCEEEEEEeCC---eEEEEEecCCCCHHHHHHHHHHhhCCC---ccceEEE--EcCcc---cccCCccccccCcccccc
Q 007773           31 NDSILIFLSVGG---SVIPMRVMESDSIASVKLRIQSYNGFF---VKKQKLV--FEGRE---LARSNSRVRDYGLADGNV   99 (590)
Q Consensus        31 ~~sM~I~Vtl~G---~t~~l~V~~sdTV~~LK~kIq~~~Gip---~~~QrLv--f~Gk~---L~~D~~tL~dygI~~gst   99 (590)
                      ...|+|+....+   ..+.+.|..+.||.+|-..++++.+++   ..+.+|+  ++++.   +. ++.+|....=+...+
T Consensus       337 ~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~-~~~~i~~i~d~~~~~  415 (530)
T 2ylm_A          337 RRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQ-EDELLECLSPATSRT  415 (530)
T ss_dssp             BCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEEC-TTSBGGGSCCCTTCE
T ss_pred             CceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecC-CCcccccccccccce
Confidence            345666653222   367777888999999999999999987   4556664  67764   54 555665442211223


Q ss_pred             eeEEeeecc--------cccceee-------eccceeeEEEeecCCcHHHHHHHHHHhcCCC
Q 007773          100 LHLVLRLSD--------LQAITVT-------TVCGKVFEFHVERGRNVGYVKQQIAKKGREF  146 (590)
Q Consensus       100 L~LvlrLsd--------~m~I~Vk-------t~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~  146 (590)
                      +.+-.-..+        .+.|.|-       ..-|..|.+.|.+..|..++|++|+++.|++
T Consensus       416 ~rieeip~ee~~~~~~~~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~  477 (530)
T 2ylm_A          416 FRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQ  477 (530)
T ss_dssp             EEEEECCGGGSSCCTTTEEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCC
T ss_pred             EEEEECCHHHhccCCCCcEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCC
Confidence            332111111        1223331       1358889999999999999999999999976

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=84.54  E-value=1.1  Score=40.05  Aligned_cols=70  Identities=19%  Similarity=0.289  Sum_probs=54.4

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhh-CCCccceEEE--EcCcccccCCccccccCcccccce
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLV--FEGRELARSNSRVRDYGLADGNVL  100 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~-Gip~~~QrLv--f~Gk~L~~D~~tL~dygI~~gstL  100 (590)
                      ....+|.| ..+|+.+.-+...++||.+|..-|.... +.......|+  |-.+.|.+++.+|.+.|+.+..+|
T Consensus        50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            34578888 5688999999999999999999999863 3444555666  457888766799999999875443

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=84.32  E-value=3.1  Score=49.58  Aligned_cols=143  Identities=19%  Similarity=0.261  Sum_probs=78.3

Q ss_pred             hhheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHc--cCh
Q 007773          415 VHKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINA--LDA  490 (590)
Q Consensus       415 v~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~--Ld~  490 (590)
                      +.-.+|.=|++.=.|||.+|||+.++  |+  ++.||=|+||-..-+  .|   ..---..||  +++.++.+..  ...
T Consensus       924 ~A~ysvv~YiLgigDRH~~NILid~t--G~--v~HIDFG~~f~~~~~--~~---~~~~E~vPFrLT~~mv~vmg~G~~~~  994 (1091)
T 3hhm_A          924 CAGYCVATFILGIGDRHNSNIMVKDD--GQ--LFHIDFGHFLDHKKK--KF---GYKRERVPFVLTQDFLIVISKGAQEC  994 (1091)
T ss_dssp             HHHHHHHHHHHTCCCCCTTTEEEETT--SC--EEECCCCCCSCC-----------------CCCCCHHHHHHSSCSSSCC
T ss_pred             hhhhhheEEEEeecCCCCcceEEeCC--CC--EEEEeehhhhccCCc--cC---CCCcCCCCceeHHHHHHHHhcCCCCc
Confidence            44567888999999999999999864  87  999999999964211  11   000123454  5555544321  111


Q ss_pred             --HHhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHH
Q 007773          491 --EKDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFL  568 (590)
Q Consensus       491 --~~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~  568 (590)
                        ......+|.       -|..++++    |++   ..-.+-.+.++|--..+..-+. +.-++.-++...++.+|+.-.
T Consensus       995 e~s~~fg~Fr~-------~c~~a~~~----LR~---~~~~il~LlelM~~s~lp~~~~-~~~i~~lr~rf~l~lseeeA~ 1059 (1091)
T 3hhm_A          995 TKTREFERFQE-------MCYKAYLA----IRQ---HANLFINLFSMMLGSGMPELQS-FDDIAYIRKTLALDKTEQEAL 1059 (1091)
T ss_dssp             SSSHHHHHHHH-------HHHHHHHH----HHH---TTTHHHHHHHHGGGSCCTTCSS-HHHHHHHHHHSCCSSCHHHHH
T ss_pred             ccchhHHHHHH-------HHHHHHHH----HHh---hhHHHHHHHHHHhcCCCCccCc-hHHHHHHHHHhCCCCCHHHHH
Confidence              222233332       23333322    111   1222333444554433322111 233555677788999999888


Q ss_pred             HHHHHHHHHHhhh
Q 007773          569 ESVASIMDRHLDD  581 (590)
Q Consensus       569 ~~~~~~~~~~~~~  581 (590)
                      +.+..+|+.-+..
T Consensus      1060 ~~f~~~i~~s~~~ 1072 (1091)
T 3hhm_A         1060 EYFMKQMNDARHG 1072 (1091)
T ss_dssp             HHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888777643

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=83.28  E-value=6.4  Score=47.02  Aligned_cols=141  Identities=23%  Similarity=0.271  Sum_probs=77.7

Q ss_pred             hheeeeeeeeecCCCCCCcEEEeccCCCceEEEeeccCCcCCCCCCCCcccccccCcCCCCC--CHHHHHHHHcc--ChH
Q 007773          416 HKISVLDIRLANTDRHAGNILVSKDEGGQIKLVPIDHGYCLPYSFEDCTFDWLYWPQARQPY--SPETINYINAL--DAE  491 (590)
Q Consensus       416 ~ki~ilD~~i~N~DR~~gNiLv~~~~~g~~~l~pIDhGl~fp~~~~~~~f~W~~wpqa~~Pf--s~~~~~~i~~L--d~~  491 (590)
                      .-.+|.=|++.=.|||.+|||+..  +|+  ++-||=|.||-..-.  .|.   .---..||  +++.++.+..-  ..+
T Consensus       928 A~ySvv~YILGlGDRH~~NILid~--tG~--v~HIDFG~~f~~~~~--~l~---~~pE~VPFRLT~~mv~~mg~g~~~~s  998 (1092)
T 2y3a_A          928 AGYCVASYVLGIGDRHSDNIMVKK--TGQ--LFHIDFGHILGNFKS--KFG---IKRERVPFILTYDFIHVIQQGKTGNT  998 (1092)
T ss_dssp             HHHHHHHHHTTCCCCCTTTEEECT--TSC--EEECCCSCCSSCCCC--GGG---CCCCCCCCCCCHHHHHHHHTTCSSCS
T ss_pred             HHHHHHHHHhcCCCCCCccEEEec--CCC--EEEEeehhhhhcCCc--cCC---CCCCCCCccCCHHHHHHHccCCCCCC
Confidence            346677788888999999999985  487  999999999954211  110   00124454  56666555421  111


Q ss_pred             HhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCCHhhHhcccccCCCCCCchHHHHHHHHHHhcCCCCChhhHHHHH
Q 007773          492 KDIELLKFHGWDIPPECARVLRISTMLLKKGVDRGLTPFDIGCIMCRKTLKDESVIEQIVREAQDAVLPGTSEDGFLESV  571 (590)
Q Consensus       492 ~d~~~l~~~~~~~~~~~~~~l~~~t~~Lk~~~~~gl~~~~i~~~~~r~~~~~~s~le~~~~~a~~~~~~~~~~~~f~~~~  571 (590)
                      .....++       .-|..++++.    ++-.   -.+-.+-++|-+..+-.-+. +.-++.-++...++.+|+.-.+.+
T Consensus       999 ~~fg~Fr-------~~c~~a~~~L----R~~~---~~Il~ll~lml~~~Lp~~~~-~~~i~~lr~rf~l~~seeeA~~~~ 1063 (1092)
T 2y3a_A          999 EKFGRFR-------QCCEDAYLIL----RRHG---NLFITLFALMLTAGLPELTS-VKDIQYLKDSLALGKSEEEALKQF 1063 (1092)
T ss_dssp             SSTTHHH-------HHHHHHHHHH----HHTH---HHHHHHHHHTSTTCCSSCSS-HHHHHHHHHHTTCSSCHHHHHHHH
T ss_pred             cchhhHH-------HHHHHHHHHH----HhCH---HHHHHHHHHHhCCCCccccc-hhHHHHHHHhhCCCCCHHHHHHHH
Confidence            1111122       2243333321    1111   12334455666654432221 123444556677888998877777


Q ss_pred             HHHHHHHhh
Q 007773          572 ASIMDRHLD  580 (590)
Q Consensus       572 ~~~~~~~~~  580 (590)
                      .++++.-+.
T Consensus      1064 ~~~I~~s~~ 1072 (1092)
T 2y3a_A         1064 KQKFDEALR 1072 (1092)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777777663

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=82.25  E-value=4.4  Score=33.84  Aligned_cols=60  Identities=15%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             eEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          122 FEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       122 ~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      +.-.++-..++..||+.++.+.++.  .+...++..+..|+++++|.|-|++-...+.+.+.
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~--L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq   64 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCS--LDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ   64 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSC--CSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCC--cccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence            4445677889999999999999988  89999999999999999999999999999998765

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=81.29  E-value=5.9  Score=35.54  Aligned_cols=68  Identities=10%  Similarity=0.014  Sum_probs=49.1

Q ss_pred             cceeeEEEeecCCcHHHHHHHHHHhc--CCCC----CCCcEEEEE----CCEE-cCC-------------CCcccccCCC
Q 007773          118 CGKVFEFHVERGRNVGYVKQQIAKKG--REFV----DLKNQELIC----DGEE-LED-------------QRLITDICKR  173 (590)
Q Consensus       118 ~Gk~~~i~Vd~s~TV~~LK~kI~~~~--gi~~----~~~~Q~Lif----~Gk~-LeD-------------~~tL~dy~I~  173 (590)
                      .+..+.+.|=.++||..+|+||-...  +.|.    .+++..|-+    .|+. |.|             =+||..|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            34568888889999999999997764  3331    246777876    3333 544             2578899999


Q ss_pred             CCCEEEEEeecC
Q 007773          174 NEAVIHLLVRKS  185 (590)
Q Consensus       174 ~gsvI~L~vrks  185 (590)
                      +|+++-|+.+.+
T Consensus        95 dgatv~l~~~~~  106 (127)
T 3h6n_A           95 EGASLAMSLIDK  106 (127)
T ss_dssp             TTCEEEEEECC-
T ss_pred             CCCEEEEEEccc
Confidence            999999976543

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=81.19  E-value=3.4  Score=35.81  Aligned_cols=70  Identities=16%  Similarity=0.131  Sum_probs=52.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEcC--CCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELE--DQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~Le--D~~tL~dy~I~~gsvI~L~v  182 (590)
                      .+|.||..+|+.+.-....++||.+|..-|.... ..  +....|+  |-.+.|.  ...+|.+.++.+.++|.+.-
T Consensus        24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~--~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~   97 (109)
T 2cr5_A           24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YH--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   97 (109)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CC--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CC--CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence            4555666667666666678999999999998663 33  5667776  5577775  47999999999999987643

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=81.05  E-value=3  Score=37.21  Aligned_cols=68  Identities=12%  Similarity=0.159  Sum_probs=51.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcC-CCCCCCcEEEE--ECCEEcCC-CCcccccCCCCCCEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELI--CDGEELED-QRLITDICKRNEAVIH  179 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g-i~~~~~~Q~Li--f~Gk~LeD-~~tL~dy~I~~gsvI~  179 (590)
                      .+|.||..+|..+.-....++||.+|.+-|..... ..  .....|+  |-.+.|+| ..+|.+.++.+.++|.
T Consensus        53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~--~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~  124 (127)
T 1s3s_G           53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ  124 (127)
T ss_dssp             CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG--TSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC--CCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence            45666777777777777889999999999988642 22  4556776  56888865 7999999998855543

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=80.67  E-value=9.6  Score=30.07  Aligned_cols=67  Identities=7%  Similarity=0.084  Sum_probs=48.2

Q ss_pred             CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      ..|+|+|.-......+++....|+.+|...+    +++...-.+..+|..+.++.      -+++|+.|.++....|
T Consensus         3 ~~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~------~L~~gD~V~ii~~V~G   69 (70)
T 1ryj_A            3 IGMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE------EIFDGDIIEVIRVIYG   69 (70)
T ss_dssp             CCEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS------BCCTTCEEEEEECTTC
T ss_pred             eeEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc------cCCCCCEEEEEecccc
Confidence            3488888544455677888889999998876    45666566778999887432      5778999888765554

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=80.38  E-value=4.8  Score=33.52  Aligned_cols=49  Identities=10%  Similarity=0.095  Sum_probs=43.0

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCc
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR   80 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk   80 (590)
                      ...|.|.|... -++.|+|.++.+..+|..+|.++.+++++.-+|.|...
T Consensus         3 ~~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~   51 (83)
T 1oey_A            3 HMAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR   51 (83)
T ss_dssp             SSCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred             CCcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence            45688888655 59999999999999999999999999988889988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	590
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-13
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	1e-05
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	1e-12
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	9e-07
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	1e-11
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	4e-06
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-11
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	1e-07
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	2e-11
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	1e-09
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	2e-11
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	3e-06
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	7e-11
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	1e-10
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	6e-08
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	1e-10
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	4e-10
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	5e-10
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	2e-08
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	7e-10
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	2e-09
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	2e-07
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	3e-09
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	8e-09
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-09
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	5e-06
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	9e-09
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	2e-08
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	1e-08
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	6e-06
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	2e-08
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	2e-08
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	2e-08
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	2e-08
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	7e-07
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	2e-08
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	2e-06
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	3e-08
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	1e-05
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	8e-08
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	1e-07
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	2e-07
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	4e-05
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	3e-07
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	2e-06
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	6e-05
d1se9a_	101	d.15.1.1 (A:) Hypothetical protein At3g01050 {Thal	4e-06
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	5e-06
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	0.004
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	1e-05
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	8e-04
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	1e-05
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-05
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	3e-05
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	2e-04
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	3e-04
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	0.001
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	5e-04
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	5e-04
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	6e-04

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 11/75 (14%), Positives = 34/75 (45%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
                ++V     +++ ++  +  +G   ++ ++V+  + L   +  +  YGL DG+++ 
Sbjct: 21  EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVV 80

Query: 102 LVLRLSDLQAITVTT 116
           L+ + +        T
Sbjct: 81  LLQKDNVGLRTPGRT 95

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 112 ITVTTVC----GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-LEDQRL 166
           ITV  V        F   V     +   +     +     +    +++   +   +D   
Sbjct: 10  ITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAE--EAQIVYMEQLLTDDHCS 67

Query: 167 ITDICKRNEAVIHLLVRKSAKVRAKP 192
           +     ++  ++ LL + +  +R   
Sbjct: 68  LGSYGLKDGDMVVLLQKDNVGLRTPG 93

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 28  KLSNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNS 87
           ++ N        + G V+   +  +D ++ +K++I    G    KQKL +EG  +  SNS
Sbjct: 7   QVPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNS 66

Query: 88  RVRDYGLADGNVLHLVLRL 106
            +  Y +A+G V+HL L+ 
Sbjct: 67  -LAYYNMANGAVIHLALKE 84

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 119 GKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVI 178
           G+V  F +     V  +K +I +     +    Q+L  +G  ++D   +      N AVI
Sbjct: 21  GQVLVFTLPLTDQVSVIKVKIHEA--TGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 78

Query: 179 HLLVRK 184
           HL +++
Sbjct: 79  HLALKE 84

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR-EFVDLKNQELICDGEELEDQRLITDI 170
           +T+ T+  + F+  ++    V  +K++I  +   +   +  Q+LI  G+ L D   + + 
Sbjct: 3   VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62

Query: 171 CKRNEAVIHLLVRKSAKVRA 190
               +  + ++V K   V  
Sbjct: 63  KIDEKNFVVVMVTKPKAVST 82

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 12/70 (17%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 39  SVGGSVIPMRVMESDSIASVKLRIQS---YNGFFVKKQKLVFEGRELARSNSRVRDYGLA 95
           ++      + +   +++ ++K +I+S    + F V  QKL++ G+ L   ++ +++Y + 
Sbjct: 7   TLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKIL-NDDTALKEYKID 65

Query: 96  DGNVLHLVLR 105
           + N + +++ 
Sbjct: 66  EKNFVVVMVT 75

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 33  SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           S+ I +  G     + V    ++   K  I   NG  V  Q+L++ G+ L    + V  Y
Sbjct: 1   SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQT-VESY 59

Query: 93  GLADGNVLHLVLR 105
            + DG+ +HLV  
Sbjct: 60  HIQDGHSVHLVKS 72

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I + +   K +E +V     V   K+ I K     + + NQ LI  G+ L+D + +    
Sbjct: 4   IHIKSGQDK-WEVNVAPESTVLQFKEAINKA--NGIPVANQRLIYSGKILKDDQTVESYH 60

Query: 172 KRNEAVIHLLVRK 184
            ++   +HL+  +
Sbjct: 61  IQDGHSVHLVKSQ 73

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 31  NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           ++ + I + +  G      V  + ++A +K ++    G       L FEG+ L      +
Sbjct: 1   DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPL-EDQLPL 59

Query: 90  RDYGLADGNVLHLVLRL 106
            +YGL   + + + LRL
Sbjct: 60  GEYGLKPLSTVFMNLRL 76

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 1e-09
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V    G+   + V   + V ++KQQ++       DL       +G+ LEDQ  + +  
Sbjct: 6   ILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWL--TFEGKPLEDQLPLGEYG 63

Query: 172 KRNEAVIHLLVR 183
            +  + + + +R
Sbjct: 64  LKPLSTVFMNLR 75

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.5 bits (141), Expect = 2e-11
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 18/96 (18%)

Query: 30  SNDSILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK------------ 74
           S+ S  + + V    G V+P+ V+++ ++  +K  IQ Y     +++             
Sbjct: 2   SSGSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWR 61

Query: 75  ---LVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107
              L   G +L     ++RDYG+ + + +  + +L 
Sbjct: 62  TYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLG 97

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 14/90 (15%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKK-------------GREFVDLKNQELICDG 158
           + V  + G+V    V +   V  +K+ I +                     +   L   G
Sbjct: 10  VRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAG 69

Query: 159 EELEDQR-LITDICKRNEAVIHLLVRKSAK 187
           E+L + R  + D   RN   +  + +   K
Sbjct: 70  EKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 7e-11
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIA-KKGREFVDLKNQELICDGEELEDQRLITDI 170
           IT+ T+  + F+  +E    V  +K++I  +KGR+   +  Q+LI  G+ L D   I D 
Sbjct: 5   ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64

Query: 171 CKRNEAVIHLLV 182
               +  + ++V
Sbjct: 65  RIDEKNFVVVMV 76

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 36  IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGL 94
           +F+        P+ V    SI  +K  +    G    + +++F G+EL    + V++  L
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNHLT-VQNCDL 63

Query: 95  ADGNVLHLVLRL 106
              +++H+V R 
Sbjct: 64  EQQSIVHIVQRP 75

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (114), Expect = 6e-08
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V       F   V+   ++  +K+ +AK+  + V      +I  G+EL +   + +  
Sbjct: 5   VFVRFNSSYGFPVEVDSDTSILQLKEVVAKR--QGVPADQLRVIFAGKELPNHLTVQNCD 62

Query: 172 KRNEAVIHLLVR 183
              ++++H++ R
Sbjct: 63  LEQQSIVHIVQR 74

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.6 bits (134), Expect = 1e-10
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + +  +D+I  +K R++   G    +Q+L++ G++LA   +  +DY +  G+VLH
Sbjct: 10  GKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKT-AKDYNIEGGSVLH 68

Query: 102 LVLRL 106
           LVL L
Sbjct: 69  LVLAL 73

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK  E  +E    +  +K+++ +K  E +    Q LI  G++L D +   D  
Sbjct: 3   IKVKTLTGKEIEIDIEPTDTIDRIKERVEEK--EGIPPVQQRLIYAGKQLADDKTAKDYN 60

Query: 172 KRNEAVIHLLVR 183
               +V+HL++ 
Sbjct: 61  IEGGSVLHLVLA 72

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 5e-10
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  I + V  SD+I +VK +IQ   G    +Q+L+F G++L    + + DY +   + LH
Sbjct: 10  GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT-LSDYNIQKESTLH 68

Query: 102 LVLRL 106
           LVLRL
Sbjct: 69  LVLRL 73

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           I V T+ GK     VE    +  VK +I  K  E +    Q LI  G++LED R ++D  
Sbjct: 3   IFVKTLTGKTITLEVEPSDTIENVKAKIQDK--EGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 172 KRNEAVIHLLVR 183
            + E+ +HL++R
Sbjct: 61  IQKESTLHLVLR 72

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 7e-10
 Identities = 12/63 (19%), Positives = 26/63 (41%)

Query: 43  SVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHL 102
            V   +      +  +   ++   G     QKL+F+G+ L    + +   G+ DG  + L
Sbjct: 16  HVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 75

Query: 103 VLR 105
           + +
Sbjct: 76  IGK 78

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  I +F+ +  G      +  +  I  +K +I+   G   K+Q+L F+G+ L +    
Sbjct: 4   GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVL-QDWLG 62

Query: 89  VRDYGLADGNVLHLVLRL 106
           +  YG+ D + L L  + 
Sbjct: 63  LGIYGIQDSDTLILSKKK 80

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V    G  + + +     +  +KQQI  +  + +  K Q+L   G+ L+D   +    
Sbjct: 10  VFVKNPDGGSYAYAINPNSFILGLKQQIEDQ--QGLPKKQQQLEFQGQVLQDWLGLGIYG 67

Query: 172 KRNEAVIHLLVRK 184
            ++   + L  +K
Sbjct: 68  IQDSDTLILSKKK 80

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 3e-09
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V T+  +   F V    NV   K+ IA      +  + Q LI  G  L+D + + +  
Sbjct: 3   VLVKTLDSQTRTFIVGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQE-Y 59

Query: 172 KRNEAVIHLLVRK 184
                VIHL+ R 
Sbjct: 60  NVGGKVIHLVERA 72

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 8e-09
 Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 34  ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           + + + ++        V    ++   K  I +      +KQ+L+++GR L + + ++++Y
Sbjct: 1   LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVL-QDDKKLQEY 59

Query: 93  GLADGNVLHLVLR 105
            +  G V+HLV R
Sbjct: 60  NV-GGKVIHLVER 71

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 100 LHLVLRLSDLQAITVTTVCGKVFE--FHVERGRNVGYVKQQIAKKGREFV-DLKNQELIC 156
            HL ++L+D      + +     E   +   G ++ ++KQ IA K +E V D +  +LI 
Sbjct: 6   WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY 65

Query: 157 DGEELEDQRLITDICKRNEAVIHLLVR 183
            G +L+D + +     +  + +H+L +
Sbjct: 66  CGRKLKDDQTLDFYGIQPGSTVHVLRK 92

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 49  VMESDSIASVKLRIQ---SYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR 105
            +   SI+ +K  I      +    +   L++ GR+L    + +  YG+  G+ +H++ +
Sbjct: 34  SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQT-LDFYGIQPGSTVHVLRK 92

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 9e-09
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  + + V  +D++  +K R+ +  G     Q+  F GR L        +  +    V+ 
Sbjct: 13  GKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMK-FEELKIPKDYVVQ 71

Query: 102 LVLRL 106
           +++  
Sbjct: 72  VIVSQ 76

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + +    GK  +  V     V ++K+++     E V+  +Q     G  L D+    ++ 
Sbjct: 6   LRLRLSTGKDLKLVVRSTDTVFHMKRRLHAA--EGVEPGSQRWFFSGRPLTDKMKFEELK 63

Query: 172 KRNEAVIHLLVRKSA 186
              + V+ ++V +  
Sbjct: 64  IPKDYVVQVIVSQPV 78

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 10/59 (16%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 49  VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS 107
           +     +  ++ +IQ         Q+L + G+++   ++ + DY +   + + L++R S
Sbjct: 19  LSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHT-LFDYEVRLNDTIQLLVRQS 76

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 6e-06
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGKVFEF--HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           I V T+ G+       + R   V  ++++I +     V+   Q L   G+++ED   + D
Sbjct: 3   IQVRTMDGRQTHTVDSLSRLTKVEELRRKIQEL--FHVEPGLQRLFYRGKQMEDGHTLFD 60

Query: 170 ICKRNEAVIHLLVRKS 185
              R    I LLVR+S
Sbjct: 61  YEVRLNDTIQLLVRQS 76

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEELEDQRLITD 169
           +TV  + G  F+  +    +V  +K QI +K         Q L     G  L+D+  +  
Sbjct: 3   LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAF--QQRLAVHPSGVALQDRVPLAS 60

Query: 170 ICKRNEAVIHLLVRKS 185
                 + + L+V KS
Sbjct: 61  QGLGPGSTVLLVVDKS 76

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR-VRDYGLADGNV 99
            G+   + +  S S++ +K +I    G    +Q+L      +A  +   +   GL  G+ 
Sbjct: 9   AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGST 68

Query: 100 LHLVLRLS 107
           + LV+  S
Sbjct: 69  VLLVVDKS 76

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 11/77 (14%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 30  SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSR 88
            +  I + L  +  +         D++ ++K +          + KL+++GR L      
Sbjct: 4   GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQE---SQMKLIYQGRLLQDPART 60

Query: 89  VRDYGLADGNVLHLVLR 105
           +    + +  V+H    
Sbjct: 61  LSSLNITNNCVIHCHRS 77

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           S+  I + +          + E+ ++   K +I  Y      +  L+F G+ L      +
Sbjct: 7   SSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRD-QDIL 65

Query: 90  RDYGLADGNVLHLVLR 105
              G+ DG+ +H+V+R
Sbjct: 66  SQRGILDGSTVHVVVR 81

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (106), Expect = 7e-07
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           ++V T      EF +    NV   K+QI+K      +     LI  G+ L DQ +++   
Sbjct: 13  VSVKTPQDC-HEFFLAENSNVRRFKKQISKY--LHCNADRLVLIFTGKILRDQDILSQRG 69

Query: 172 KRNEAVIHLLVR 183
             + + +H++VR
Sbjct: 70  ILDGSTVHVVVR 81

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  + ++    D+I  +K  I +  G    K  L           S + DY + DG  L 
Sbjct: 38  GKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVS-LGDYEIHDGMNLE 96

Query: 102 LVLR 105
           L  +
Sbjct: 97  LYYQ 100

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +      GK           +G +K+ IA +           L       +D   + D  
Sbjct: 31  VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQ--TGTRWNKIVLKKWYTIFKDHVSLGDYE 88

Query: 172 KRNEAVIHLLVR 183
             +   + L  +
Sbjct: 89  IHDGMNLELYYQ 100

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 112 ITVTTVCGKVFEFHVERGRN--VGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITD 169
           + V +   +  +  +   R   VG++K  +++   E    ++Q LI  G+ L D + + D
Sbjct: 10  LLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRD 69

Query: 170 ICKRNEA--VIHLLVR 183
           +  + E   V+HL+  
Sbjct: 70  LLPKQEKRHVLHLVCN 85

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 45  IPMRVMESDSIASVKLRIQSYNGFFV--KKQKLVFEGRELARSNSRVRDYGLA--DGNVL 100
           + +      S+  +K  +          + Q+L++ G+ L      +RD        +VL
Sbjct: 22  LELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQC-LRDLLPKQEKRHVL 80

Query: 101 HLVLRLS 107
           HLV  + 
Sbjct: 81  HLVCNVK 87

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 8e-08
 Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG 93
           + + +    + I     ES ++  +K  ++        +Q+L  + + L    + + + G
Sbjct: 2   VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKT-LGECG 60

Query: 94  LADGN-------VLHLVLRLSD 108
                        + L  R  D
Sbjct: 61  FTSQTARPQAPATVGLAFRADD 82

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (112), Expect = 1e-07
 Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 38  LSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADG 97
           +    +     V    +I  ++ R+ +      + Q+L + G++L    + + DY +   
Sbjct: 8   IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYT-LFDYDVGLN 66

Query: 98  NVLHLVLR 105
           +++ L++R
Sbjct: 67  DIIQLLVR 74

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 30  SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           S   I + +          V ++ +I  +K  I         +  L+F G+   +    +
Sbjct: 4   SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI-LKDPDSL 62

Query: 90  RDYGLADGNVLHLVLRLS 107
              G+ DG  +HLV++  
Sbjct: 63  AQCGVRDGLTVHLVIKRQ 80

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  +F V     +  +K++I+++           LI  G+ L+D   +    
Sbjct: 10  VTVKTPKDK-EDFSVTDTCTIQQLKEEISQR--FKAHPDQLVLIFAGKILKDPDSLAQCG 66

Query: 172 KRNEAVIHLLVRKSAK 187
            R+   +HL++++  +
Sbjct: 67  VRDGLTVHLVIKRQHR 82

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (110), Expect = 3e-07
 Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 8/82 (9%)

Query: 32  DSILIFLSVGGSVIPM--RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGR------ELA 83
           +   + ++   +  PM  +     S+  +K +++   G  V   ++           EL 
Sbjct: 3   EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELT 62

Query: 84  RSNSRVRDYGLADGNVLHLVLR 105
                ++D G+ DG  +H V  
Sbjct: 63  DGAKSLKDLGVRDGYRIHAVDV 84

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 34  ILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYG 93
           I + +          V E+ S+   K  I         +  L+F G+ L   ++ +  +G
Sbjct: 33  IKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDT-LIQHG 91

Query: 94  LADGNVLHLVLR 105
           + DG  +HLV++
Sbjct: 92  IHDGLTVHLVIK 103

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           +TV T   K  EF V    +V   K+ I+K+           LI  G+ L+DQ  +    
Sbjct: 35  VTVKTPKEK-EEFAVPENSSVQQFKEAISKR--FKSQTDQLVLIFAGKILKDQDTLIQHG 91

Query: 172 KRNEAVIHLLVR 183
             +   +HL+++
Sbjct: 92  IHDGLTVHLVIK 103

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 15/87 (17%)

Query: 35  LIFLSVGGSVI-PMRVMESDSIASVKLRIQSYNGFF-------VKKQKLVFEGRELARSN 86
           + F    GS I P    ++ +++++K  + S            VK+ KL+  G+ L  S 
Sbjct: 10  IKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSK 69

Query: 87  SRVRDYGLADG------NVLHLVLRLS 107
           + V+DY             +H++++  
Sbjct: 70  T-VKDYRSPVSNLAGAVTTMHVIIQAP 95

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 42.5 bits (100), Expect = 5e-06
 Identities = 9/76 (11%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 31  NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVR 90
              I + +S G S I  ++ ++  +  +        G  +   + +++G  + +++    
Sbjct: 2   ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRI-QADQTPE 60

Query: 91  DYGLADGNVLHLVLRL 106
           D  + D +++      
Sbjct: 61  DLDMEDNDIIEAHREQ 76

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 112 ITVTTV-CGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDI 170
           I +          F +++   +  + +  AK  R+  ++ +   + DG  ++  +   D+
Sbjct: 5   INLKVSDGSSEIFFKIKKTTPLRRLMEAFAK--RQGKEMDSLRFLYDGIRIQADQTPEDL 62

Query: 171 CKRNEAVIHLLVR 183
              +  +I     
Sbjct: 63  DMEDNDIIEAHRE 75

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 42  GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLH 101
           G  + ++ +  DS+   K  +    G    K  L   G  L + +  + DY + D   L 
Sbjct: 11  GKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVL-KDHISLEDYEVHDQTNLE 69

Query: 102 L 102
           L
Sbjct: 70  L 70

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V    GK          +VG  K+ ++   +         L   G  L+D   + D  
Sbjct: 4   VVVNDRLGKKVRVKCLAEDSVGDFKKVLSL--QIGTQPNKIVLQKGGSVLKDHISLEDYE 61

Query: 172 KRNEAVIHL 180
             ++  + L
Sbjct: 62  VHDQTNLEL 70

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 33  SILIFLSVGGSVIPMRV-MESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRD 91
            +       G  + + V   S+++ S+K +I         KQKL  +   L  + S +  
Sbjct: 31  RVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMS-LAH 89

Query: 92  YGLADGNVLHLVLRL 106
           Y +  G +L L LR 
Sbjct: 90  YNVGAGEILTLSLRE 104

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 33  SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE------LARSN 86
            + I  S+       R   S +IA  K +++   G      +L   G +      L + +
Sbjct: 9   MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED 68

Query: 87  SRVRDYGLADGNVLHLVLR 105
           + +  Y + DG  +H++  
Sbjct: 69  ALLGSYPVDDGCRIHVIDH 87

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 35  LIFLSV--GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDY 92
           L+ L +    +   ++V    + + +K +I S  G     QK+++  + L   +  +R+ 
Sbjct: 17  LVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY--KGLVPEDKTLREI 74

Query: 93  GLADGNVLHLVLR 105
            +  G  + +V  
Sbjct: 75  KVTSGAKIMVVGS 87

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 26  PEKLSNDSILIFL----SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE 81
               S   + + +         ++  ++ +S ++  VK  +       V +  L +E  +
Sbjct: 2   SSGSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSK 61

Query: 82  LA-------RSNSRVRDYGLADGNVLHLV 103
           +             ++ Y + +G+ L + 
Sbjct: 62  MPGREIELENDLQPLQFYSVENGDCLLVR 90

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVD-LKNQELICDGEELEDQRLITDI 170
           I V     +     +     V  +KQ +        +  K   L   G+  E+   +  +
Sbjct: 10  IIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGAL 69

Query: 171 CKRNEAVIHLLVRKSA 186
             +    I ++  + +
Sbjct: 70  KLKPNTKIMMMGTRES 85

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 30  SNDSILIFLSVGGSVIP-MRVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARS 85
            +  + I +  GG       + E D++  +K  +++  G   ++QKL+    +G+     
Sbjct: 4   GSSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND 63

Query: 86  NSRVRDYGLADGNVLHLVLR 105
              +    L     + ++  
Sbjct: 64  VK-LGALKLKPNTKIMMMGT 82

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 9/76 (11%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 33  SILIFLSV---GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRV 89
           +I +FL           +      +   ++ +I    G      K+V   ++  +    +
Sbjct: 17  TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQ-LQLGKTL 75

Query: 90  RDYGLADGNVLHLVLR 105
            + G+A      ++  
Sbjct: 76  EEQGVAHNVKAMVLEL 91

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 7/63 (11%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 41  GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVL 100
                 + +   +     K ++ +  G    +QK++ +G  L   +    +  + +G  +
Sbjct: 16  KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTL--KDDDWGNIKMKNGMTV 73

Query: 101 HLV 103
            ++
Sbjct: 74  LMM 76

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDIC 171
           + V         F V+   ++  +K+   +  R+ V + +   + +G+ + D     ++ 
Sbjct: 5   LKVIGQDSSEIHFKVKMTTHLKKLKESYCQ--RQGVPMNSLRFLFEGQRIADNHTPKELG 62

Query: 172 KRNEAVIHLLVR 183
              E VI +   
Sbjct: 63  MEEEDVIEVYQE 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	590
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.68
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.68
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.67
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.67
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.67
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.67
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.66
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.66
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.65
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.64
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.63
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.61
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.61
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.6
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.6
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.58
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.58
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.58
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.58
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.55
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.54
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.54
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.53
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.52
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.52
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.52
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.52
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.51
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.48
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.46
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.46
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.46
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.46
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.45
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.45
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.44
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.44
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.44
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.43
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.43
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.42
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.42
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.4
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.39
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.39
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.35
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.34
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.33
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.31
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.31
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.3
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.29
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.28
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.24
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.23
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.23
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.19
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.19
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.14
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.09
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.09
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.05
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	98.97
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	98.96
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.88
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.86
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	98.84
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.8
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	98.76
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	98.69
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.53
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.46
d1cjaa_	342	Actin-fragmin kinase, catalytic domain {Physarum p	97.2
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.16
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	95.95
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	95.33
d1e7ua4	369	Phoshoinositide 3-kinase (PI3K), catalytic domain	94.18
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	91.17
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	90.74
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	89.62
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	88.7
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	86.99
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	84.81
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	82.3
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	80.53

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4e-17  Score=133.53  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=72.1

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      ++.|+|+| +.+|++++++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++||
T Consensus         1 d~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~-d~~tL~~y~I~~~sti~l~lRL   76 (76)
T d1z2ma2           1 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLE-DQLPLGEYGLKPLSTVFMNLRL   76 (76)
T ss_dssp             CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECC-CCCcHHHcCCCCCCEEEEEEeC
Confidence            47899999 789999999999999999999999999999999999999999997 8999999999999999999885

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=4.2e-17  Score=134.45  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=73.0

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      +|+|+||+.+|++++++|++++||.+||++|+++.|+|  +++|+|+|+|++|+|+++|++|+|+++++|||++|..+
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCC--GGGEEEEETTEEECTTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcC--hhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence            58999999999999999999999999999999999998  99999999999999999999999999999999988654

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=5e-17  Score=132.02  Aligned_cols=72  Identities=26%  Similarity=0.396  Sum_probs=70.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      |.|+|||.+|++++++|++++||.++|++|+++.|++  +++|+|+|+|++|+|+++|++|+|++|++|||++|
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~--~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvlr   72 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIP--PVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA   72 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC--hHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEee
Confidence            7899999999999999999999999999999999998  99999999999999999999999999999999987

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.7e-17  Score=133.21  Aligned_cols=75  Identities=36%  Similarity=0.625  Sum_probs=72.6

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      |+|+| +++|++++++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|++|++++
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~-d~~tL~~y~i~~~s~I~L~~rlrgG   76 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLSDYNIQKESTLHLVLRLRGG   76 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBGGGGTCCTTCEEEEEECTTCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcC-CCCCHHHcCCCCCCEEEEEEecCCC
Confidence            89999 899999999999999999999999999999999999999999998 8999999999999999999999875

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=6.4e-17  Score=135.90  Aligned_cols=79  Identities=23%  Similarity=0.341  Sum_probs=75.2

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      +.+.|+|+| +++|++++++|++++||.+||.+|+.++|+|+++|+|+|+|++|. |+.+|.+|+|+++++|||+.+.++
T Consensus         4 ~s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQ-DWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECC-SSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             CCCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcC-CCCcHHHcCCCCCCEEEEEecCCC
Confidence            468899999 889999999999999999999999999999999999999999998 899999999999999999998876


Q ss_pred             c
Q 007773          109 L  109 (590)
Q Consensus       109 ~  109 (590)
                      +
T Consensus        83 g   83 (87)
T d1wh3a_          83 G   83 (87)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.1e-17  Score=134.50  Aligned_cols=75  Identities=21%  Similarity=0.406  Sum_probs=72.3

Q ss_pred             CEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           33 SILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        33 sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      .|+||| +.+|++++++|++++||.+||.+|++++|+|+++|+|+|+|++|. |+.+|++|+|+++++|||++|+++
T Consensus         2 ~M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lv~R~rg   77 (78)
T d2zeqa1           2 GMIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELP-NHLTVQNCDLEQQSIVHIVQRPRR   77 (78)
T ss_dssp             CEEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEEC-TTCBGGGSSCCTTCEEEEEESSCC
T ss_pred             ceEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcC-CCCCHHHcCCCCCCEEEEEeccCC
Confidence            599999 689999999999999999999999999999999999999999997 899999999999999999999875

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=4.3e-17  Score=132.46  Aligned_cols=72  Identities=33%  Similarity=0.645  Sum_probs=70.0

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      |+|+| +++|++++++|++++||+++|.+|+.+.|+|+++|+|+|+|++|. |+.+|++|||++|++|||++||
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lvlrL   73 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTAKDYNIEGGSVLHLVLAL   73 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcC-CCCcHHHcCCCCCCEEEEEeeC
Confidence            89999 899999999999999999999999999999999999999999998 8999999999999999999986

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.2e-17  Score=134.91  Aligned_cols=78  Identities=19%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      +..|+|+||+.+|+++.++|++++||.+||++|+.+.|+|  +++|+|+|+|++|+|+++|.+|+|+++++|||+.|..+
T Consensus         5 s~~mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~stl~l~~r~~~   82 (87)
T d1wh3a_           5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGS   82 (87)
T ss_dssp             SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC--TTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCC
T ss_pred             CCcEEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcC--hHHeEEEeeceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            5679999999999999999999999999999999999998  99999999999999999999999999999999988654

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-16  Score=130.58  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=71.6

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      +.|+|+||+.+|++++++|++++||.+||++|+++.|++  +++|+|+|+|+.|+|+++|++|+|++|++|||++|
T Consensus         2 ~~~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             CCEEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCC--hhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            468999999999999999999999999999999999998  99999999999999999999999999999999886

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-16  Score=130.41  Aligned_cols=74  Identities=27%  Similarity=0.285  Sum_probs=70.3

Q ss_pred             ccceeeeccce-eeEEE-eecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGK-VFEFH-VERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk-~~~i~-Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+|||.+|+ +++++ +++++||++||++|+++.|+|  +++|+|+|+|+.|+|+++|++|+|+++++|||++|++
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~s   76 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE--PGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS   76 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcC--hHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEcC
Confidence            78999999996 78885 999999999999999999998  9999999999999999999999999999999999875

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=130.90  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=72.8

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      .++|+|||.+|+++.++|++++||.+||++|+++.|+|  +++|+|+|+|++|+|+++|++|+|+++++|||+++++.
T Consensus         3 e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvi~~p~   78 (80)
T d1ttna1           3 ECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE--PGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV   78 (80)
T ss_dssp             SEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC--STTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred             eEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCC--cccEEEEECceEcCCCCcHHHcCCCCCCEEEEEecCCC
Confidence            47899999999999999999999999999999999988  99999999999999999999999999999999998663

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.2e-16  Score=128.53  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=69.4

Q ss_pred             EEEEE-EeCCe-EEEEE-ecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           34 ILIFL-SVGGS-VIPMR-VMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        34 M~I~V-tl~G~-t~~l~-V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      |+|+| +++|+ +++++ +++++||++||.+|+.+.|+|+++|+|+|+|+.|. |+.+|.+|||+++++|||++|++
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~y~I~~~sti~lv~r~s   76 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQME-DGHTLFDYEVRLNDTIQLLVRQS   76 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTCBTTTTTCCTTCEEEEEECCC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEecc-CCCcHHHcCCCCCCEEEEEEEcC
Confidence            89999 99995 89986 89999999999999999999999999999999998 89999999999999999999874

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4e-16  Score=127.56  Aligned_cols=73  Identities=33%  Similarity=0.454  Sum_probs=71.0

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+||+.+|++++++|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|+.+|++|+|+++++|+|++|.
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~--~~~qrL~~~Gk~L~d~~tL~~y~i~~~s~I~L~~rl   73 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECT
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCC--hHHEEeEECCeEcCCCCCHHHcCCCCCCEEEEEEec
Confidence            7899999999999999999999999999999999998  999999999999999999999999999999999884

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.5e-16  Score=129.34  Aligned_cols=73  Identities=27%  Similarity=0.294  Sum_probs=69.3

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      |+|+||+.+|+++.++|++++||.+||++|+++.|+|  +++|+|+|+|+.|+|+++|+||+| ++++|||++|.+
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~d~~tL~dy~i-~~~ti~lv~r~P   73 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAP   73 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCC--TTTCCCEETTEECCSSSBHHHHTC-TTEEEBCCCSSC
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCC--hHHEEEEECCeEccCCCCHHHhCC-CCCEEEEEecCC
Confidence            6899999999999999999999999999999999998  999999999999999999999999 579999988754

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.2e-15  Score=129.93  Aligned_cols=80  Identities=19%  Similarity=0.321  Sum_probs=72.2

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCC-CCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCCc
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGRE-FVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKV  188 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi-~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~kv  188 (590)
                      |+|+||+.+|+++.++|++++||.+||++|+++.+. ..|+++|+|+|+|+.|+|+++|++|+|+++++|+|+++++...
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~~~~~~~   80 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAV   80 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCCCcHHHcCCCCCCEEEEEECCCCCC
Confidence            789999999999999999999999999999998762 1238999999999999999999999999999999999876544


Q ss_pred             c
Q 007773          189 R  189 (590)
Q Consensus       189 ~  189 (590)
                      +
T Consensus        81 ~   81 (95)
T d1uela_          81 S   81 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6e-16  Score=127.87  Aligned_cols=75  Identities=17%  Similarity=0.305  Sum_probs=72.0

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      ..|+|+| +++|+++.++|++++||++||.+|+++.|+|+.+|+|+|+|++|. |+.+|++|||+++++|||+++.+
T Consensus         2 ~e~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~sti~lvi~~p   77 (80)
T d1ttna1           2 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLT-DKMKFEELKIPKDYVVQVIVSQP   77 (80)
T ss_dssp             CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECC-TTSHHHHCCCSSSCEEEEECCCS
T ss_pred             CeEEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcC-CCCcHHHcCCCCCCEEEEEecCC
Confidence            5799999 889999999999999999999999999999999999999999997 89999999999999999998765

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=125.36  Aligned_cols=73  Identities=25%  Similarity=0.256  Sum_probs=69.1

Q ss_pred             ccceeeeccc-eeeEE-EeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCG-KVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~G-k~~~i-~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+||+.+| +++++ +|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|+++|++|+|++|++|||++|+
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR--PECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC--TTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCC--chhcEEEEEeeEecCCCCHHHcCCCCCCEEEEEEcc
Confidence            7899999999 56777 5999999999999999999998  999999999999999999999999999999999885

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-15  Score=124.65  Aligned_cols=72  Identities=18%  Similarity=0.382  Sum_probs=68.2

Q ss_pred             EEEEE-EeCC-eEEEE-EecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           34 ILIFL-SVGG-SVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G-~t~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      |+|+| +++| +++++ +|++++||++||.+|+.+.|+|+++|+|+|+|++|. |+.+|++|||++|++|||++|.
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~~y~I~~~s~i~lv~rp   75 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLE-NGYTLFDYDVGLNDIIQLLVRP   75 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECC-SSSBHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEec-CCCCHHHcCCCCCCEEEEEEcc
Confidence            89999 8898 68887 599999999999999999999999999999999997 8999999999999999999874

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2.5e-15  Score=121.93  Aligned_cols=72  Identities=28%  Similarity=0.467  Sum_probs=68.2

Q ss_pred             CEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           33 SILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        33 sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      +|+|+|+..+.++.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||+.+
T Consensus         1 si~I~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           1 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILK-DDQTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEEeCCeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEcc-CCCcHHHCCCCCCCEEEEEee
Confidence            589999767888999999999999999999999999999999999999997 899999999999999999864

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.1e-16  Score=126.17  Aligned_cols=71  Identities=23%  Similarity=0.440  Sum_probs=67.7

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      |+|+| +++|++++++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|.+|+| ++++|||++|.
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~-d~~tL~dy~i-~~~ti~lv~r~   72 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQ-DDKKLQEYNV-GGKVIHLVERA   72 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECC-SSSBHHHHTC-TTEEEBCCCSS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEcc-CCCCHHHhCC-CCCEEEEEecC
Confidence            89999 789999999999999999999999999999999999999999998 8999999999 58999998864

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.8e-15  Score=123.80  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE--CCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif--~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +|+||+.+|+++.++|++++||.+||++|+.+.|+|  +++|+|+|  +|+.|+|+.+|++|+|++|++|+|+++++
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip--~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~s   76 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH--AFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKS   76 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCC--GGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEEEECCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccC--CccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEEEEECC
Confidence            589999999999999999999999999999999998  99999999  79999999999999999999999999875

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.5e-15  Score=122.08  Aligned_cols=70  Identities=17%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      |+|+|++..|+++.++|++++||.+||++|+.+.|++  +++|+|+|+|+.|+|+.+|++|+|++|++|+|.
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~--~~~q~Li~~Gk~L~d~~tL~~y~I~~gstl~L~   71 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY   71 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCT--TTSEEEESSSCEECTTSBHHHHTCCTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhccc--ccEEEEEEEeEEecccCcHHHcCCCCCCEEEEE
Confidence            6899999999999999999999999999999999998  999999999999999999999999999999986

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.2e-15  Score=122.82  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=71.5

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      ++..|+|+|+..|.++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|.+.
T Consensus         4 ~~~~i~I~Vkt~~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~-D~~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           4 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILK-DPDSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECC-TTSBHHHHTCCTTCEEEEEECCCC
T ss_pred             CCCEEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeecc-ccCcHHHcCCCCCCEEEEEECCCC
Confidence            356899999555667899999999999999999999999999999999999997 899999999999999999988653

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=4.2e-15  Score=120.68  Aligned_cols=70  Identities=21%  Similarity=0.250  Sum_probs=67.3

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      |+|+| ++.|+++.++|.+++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||..
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~-d~~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLK-DHISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEEC-TTSBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEec-ccCcHHHcCCCCCCEEEEEE
Confidence            78999 889999999999999999999999999999999999999999997 89999999999999999863

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=9.5e-15  Score=118.47  Aligned_cols=72  Identities=22%  Similarity=0.281  Sum_probs=67.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      |+|+|++. ++++.++|++++||.+||++|+...|+|  +++|+|+|+|+.|+|+.+|++|+|++|++|||+.++
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~i~lV~~~   73 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ   73 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcC--hHHeEEEECCeEccCCCcHHHCCCCCCCEEEEEeeC
Confidence            67899975 5679999999999999999999999998  999999999999999999999999999999998764

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.7e-15  Score=122.24  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=70.7

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAK  187 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~k  187 (590)
                      .|+|+|+|.++ ++.++|++++||.+||++|++++|++  +++|+|+|+|++|+|+.+|++|+|++|++|||++|++.+
T Consensus         7 ~i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~--~~~qrL~~~Gk~L~D~~tL~~y~i~~gsti~lv~r~~~~   82 (84)
T d1yqba1           7 LIKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAH--PDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR   82 (84)
T ss_dssp             EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCC--GGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             EEEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcC--chhEEEEEeeeeccccCcHHHcCCCCCCEEEEEECCCCC
Confidence            48999999765 58999999999999999999999998  999999999999999999999999999999999987643

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.9e-15  Score=120.88  Aligned_cols=72  Identities=24%  Similarity=0.502  Sum_probs=68.5

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~G---ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      .+|+|+| +++|++++++|++++||++||.+|+.+.|   +|+++|+|+|+|+.|. |+.+|++|||+++++|++++
T Consensus         1 s~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~-D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           1 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS-DDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC-SSSBTTTTCCCTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCcc-CCCcHHHcCCCCCCEEEEEE
Confidence            4799999 89999999999999999999999999988   8999999999999997 89999999999999999876

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.4e-14  Score=118.41  Aligned_cols=71  Identities=21%  Similarity=0.305  Sum_probs=67.6

Q ss_pred             EEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEE--cCcccccCCccccccCcccccceeEEeee
Q 007773           35 LIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVF--EGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        35 ~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf--~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      +|+| +++|+++.++|++++||.+||.+|+.+.|+|+++|+|+|  .|+.|. |+.+|++|||++|++|||+++-
T Consensus         2 ~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~-D~~tL~~y~i~~g~~i~lv~~~   75 (76)
T d1z2ma1           2 DLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQ-DRVPLASQGLGPGSTVLLVVDK   75 (76)
T ss_dssp             EEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCC-SSSCSGGGTCCTTCEEEEEECC
T ss_pred             EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeecc-CCCcHHHcCCCCCCEEEEEEEC
Confidence            6899 899999999999999999999999999999999999999  699998 8999999999999999999864

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.6e-15  Score=120.19  Aligned_cols=72  Identities=24%  Similarity=0.307  Sum_probs=68.4

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcC---CCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR---EFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g---i~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      .|+|+||+.+|+++.++|++++||.+||++|+.+.|   ++  +++|+|+|+|+.|+|+++|++|+|+++++|++++
T Consensus         2 ~~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~--~~~qrLi~~Gk~L~D~~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           2 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCC--STEEEEESSSSEECSSSBTTTTCCCTTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCC--hHHEEeEECCcCccCCCcHHHcCCCCCCEEEEEE
Confidence            489999999999999999999999999999999987   55  9999999999999999999999999999999876

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-14  Score=123.74  Aligned_cols=73  Identities=19%  Similarity=0.445  Sum_probs=68.9

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhC---CCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNG---FFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~G---ip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      |+|+| +++|++++++|++++||.+||.+|+++.|   +|+++|+|+|+|+.|. |+.+|++|||+++++|+|+++.+
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~-d~~tL~~y~I~~~s~i~lv~~~~   77 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILN-DDTALKEYKIDEKNFVVVMVTKP   77 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECC-TTSBGGGGTCCSSSEEEEEESSC
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEcc-CCCcHHHcCCCCCCEEEEEECCC
Confidence            89999 89999999999999999999999999876   8999999999999998 89999999999999999988754

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.1e-14  Score=121.56  Aligned_cols=75  Identities=21%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ....|+|+|+..+.+++++|++++||.+||.+|+.++|+++++|+|+|+|+.|. |+.+|++|||++|++|||++|
T Consensus        29 ~~~~i~V~Vk~~~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~-D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          29 EPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILK-DQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CCCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEES-TTSCGGGTTCSSSEEEEEEEC
T ss_pred             CCCeEEEEEECCCccEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeeccc-CCCcHHHcCCCCCCEEEEEEC
Confidence            356799999444556899999999999999999999999999999999999997 899999999999999999985

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=8.6e-15  Score=126.02  Aligned_cols=89  Identities=16%  Similarity=0.082  Sum_probs=76.5

Q ss_pred             cCcccccceeEEeeecc----cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcc
Q 007773           92 YGLADGNVLHLVLRLSD----LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLI  167 (590)
Q Consensus        92 ygI~~gstL~LvlrLsd----~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL  167 (590)
                      |..+..+.-.++.+...    .++|+|++.+|+++.++|++++||.+||++|+.+.|+|  +++|+|+|+|+.|+|+.+|
T Consensus         7 ~~~~~ss~~~~~p~~~~~~~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip--~~~qrLi~~Gk~L~D~~tL   84 (100)
T d1uh6a_           7 HHHHHSSGASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR--WNKIVLKKWYTIFKDHVSL   84 (100)
T ss_dssp             CCCCCCCCCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC--GGGCEEEETTEECCSSCBH
T ss_pred             cccccCCcccccCCCCCCCCceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCC--cceEEEEEEeecccCcCCH
Confidence            44444444444444322    26999999999999999999999999999999999998  9999999999999999999


Q ss_pred             cccCCCCCCEEEEEe
Q 007773          168 TDICKRNEAVIHLLV  182 (590)
Q Consensus       168 ~dy~I~~gsvI~L~v  182 (590)
                      ++|+|++|++|+|..
T Consensus        85 ~dygI~~GstI~L~~   99 (100)
T d1uh6a_          85 GDYEIHDGMNLELYY   99 (100)
T ss_dssp             HHHTCCTTEEEEEEC
T ss_pred             HHcCCCCCCEEEEEE
Confidence            999999999999975

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=4.2e-14  Score=121.60  Aligned_cols=73  Identities=21%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ...|+|+| +..|+++.++|+|++||.+||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|+|..
T Consensus        26 ~~~i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~-D~~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFK-DHVSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECC-SSCBHHHHTCCTTEEEEEEC
T ss_pred             CceEEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeeccc-CcCCHHHcCCCCCCEEEEEE
Confidence            34479999 789999999999999999999999999999999999999999998 99999999999999999974

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.3e-14  Score=119.04  Aligned_cols=68  Identities=28%  Similarity=0.513  Sum_probs=65.5

Q ss_pred             eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           40 VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        40 l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      ++|++++++|++++||++||.+|+.+.|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|++|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~-D~~tL~dY~I~~gsti~l~~r~RG   86 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIK-DSNSLAYYNMANGAVIHLALKERG   86 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEEC-TTSBHHHHTCCTTEEEEEEESCCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcC-CCCCHHHcCCCCCCEEEEEEecCC
Confidence            68999999999999999999999999999999999999999998 899999999999999999998864

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.1e-14  Score=121.51  Aligned_cols=86  Identities=15%  Similarity=0.243  Sum_probs=75.5

Q ss_pred             CCCEEEEEE-----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFLS-----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~Vt-----l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...|.|+|+     +++.+++++|++++||.+||.+|+.+.|+|+++|+|+|+|+.|.+|+.+|++|||++|++|+|+.+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            578999993     457899999999999999999999999999999999999999975778999999999999999988


Q ss_pred             ecccccceeee
Q 007773          106 LSDLQAITVTT  116 (590)
Q Consensus       106 Lsd~m~I~Vkt  116 (590)
                      .......-.++
T Consensus        85 ~~~~~~~~~~~   95 (102)
T d1v5oa_          85 DNVGLRTPGRT   95 (102)
T ss_dssp             CCCCCSSCCCC
T ss_pred             CCCCCCCCCCC
Confidence            76655444443

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=2.7e-14  Score=118.58  Aligned_cols=74  Identities=20%  Similarity=0.344  Sum_probs=68.6

Q ss_pred             CCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           31 NDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...|+|+|+..+..++++|.+++||.+||.+|++..|+|+++|+|+|+|+.|. |+.+|++|||++|++|||++|
T Consensus         8 ~~~i~v~Vk~~~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~-d~~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1           8 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILR-DQDILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECC-TTSCHHHHTCCTTEEEECCBC
T ss_pred             CCeEEEEEEcCCCcEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccc-cCCcHHHcCCCCCCEEEEEEe
Confidence            57799999555666799999999999999999999999999999999999997 889999999999999999876

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.46  E-value=9.7e-14  Score=119.26  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             cccccceeeeccceee-EEEeecCCcHHHHHHHHHHh-----cCCCCCCCcEEEEECCEEcCCCCcccccCCCCCC----
Q 007773          107 SDLQAITVTTVCGKVF-EFHVERGRNVGYVKQQIAKK-----GREFVDLKNQELICDGEELEDQRLITDICKRNEA----  176 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~-~i~Vd~s~TV~~LK~kI~~~-----~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gs----  176 (590)
                      .+.|.|.||+.+|+.+ .+.|++++||.+||++|+..     .|+|.++++|+|+|+|+.|+|+++|++|++.+|+    
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~~tL~dy~i~~g~~~~~   84 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA   84 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCCCCHHHcCCCCCCcCCC
Confidence            4668999999999977 69999999999999999886     5666457899999999999999999999999998    


Q ss_pred             --EEEEEeecCC
Q 007773          177 --VIHLLVRKSA  186 (590)
Q Consensus       177 --vI~L~vrks~  186 (590)
                        ++||++|++.
T Consensus        85 ~~tmHlVvrpp~   96 (101)
T d1se9a_          85 VTTMHVIIQAPV   96 (101)
T ss_dssp             CEEEEEEECCCS
T ss_pred             ceEEEEEeCCCC
Confidence              9999999753

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=2.1e-14  Score=125.82  Aligned_cols=79  Identities=24%  Similarity=0.280  Sum_probs=71.4

Q ss_pred             CCCEEEEE-E-eCCeEEEEEecC-CCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           31 NDSILIFL-S-VGGSVIPMRVME-SDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        31 ~~sM~I~V-t-l~G~t~~l~V~~-sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      ..+++|+| . .+|+++++.|.+ ++||.+||.+|++++|+|+++|+|+|.|+.|. |+.+|++|+|++|++|||++|++
T Consensus        27 ~~ti~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~-D~~tL~~ynI~~gsti~L~lr~r  105 (111)
T d1we6a_          27 PATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLK-DNMSLAHYNVGAGEILTLSLRER  105 (111)
T ss_dssp             CEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCC-TTSBTTTTTCSSSCEEEEECSSC
T ss_pred             CEEEEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEcc-ccCCHHHcCCCCCCEEEEEeeCC
Confidence            34566666 3 468999999997 99999999999999999999999999999998 89999999999999999999999


Q ss_pred             ccc
Q 007773          108 DLQ  110 (590)
Q Consensus       108 d~m  110 (590)
                      ++.
T Consensus       106 GG~  108 (111)
T d1we6a_         106 SGP  108 (111)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            864

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.7e-14  Score=120.41  Aligned_cols=72  Identities=25%  Similarity=0.301  Sum_probs=67.9

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      .|+|+|++..+ ++.++|++++||.+||++|+..+|++  +++|+|+|+|++|+|+.+|++|+|++|++|||++|
T Consensus        32 ~i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~--~~~qrLi~~Gk~L~D~~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          32 IIKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             CEEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSC--SSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC
T ss_pred             eEEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcC--HHHeeeeeeeecccCCCcHHHcCCCCCCEEEEEEC
Confidence            48999999765 57999999999999999999999998  99999999999999999999999999999999986

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=3.8e-14  Score=117.71  Aligned_cols=74  Identities=26%  Similarity=0.317  Sum_probs=68.7

Q ss_pred             ccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          108 DLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       108 d~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ..|+|+|++.++ .+.++|++++||.+||++|++..+++  +++|+|+|+|+.|+|+++|++|+|++|++|||++|.
T Consensus         9 ~~i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~--~~~qrL~f~Gk~L~d~~tL~~~gI~~gs~I~lv~r~   82 (83)
T d1wx8a1           9 RIIRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS   82 (83)
T ss_dssp             CEEEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSC--TTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred             CeEEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCC--hhHEEEEEEhhccccCCcHHHcCCCCCCEEEEEEeC
Confidence            458999999765 46899999999999999999999998  999999999999999999999999999999998874

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.1e-13  Score=117.92  Aligned_cols=79  Identities=16%  Similarity=0.116  Sum_probs=70.0

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCCCCCEEEEEeecC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +.+|+|+||+.+|+++.++|++++||.+||++|+   .++  +++|+|+|+|+.|. |.++|.+|+|++|++|||+++++
T Consensus         5 ~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~--~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~   79 (95)
T d1wiaa_           5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQ--ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SST--TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             CCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCC--cceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCC
Confidence            4579999999999999999999999999999986   345  79999999999995 67899999999999999998877


Q ss_pred             CCccC
Q 007773          186 AKVRA  190 (590)
Q Consensus       186 ~kv~~  190 (590)
                      .....
T Consensus        80 ~~~~~   84 (95)
T d1wiaa_          80 GAAVS   84 (95)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            65443

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=6.8e-14  Score=120.72  Aligned_cols=81  Identities=14%  Similarity=0.154  Sum_probs=72.5

Q ss_pred             ccccccee----eeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCCCCCEEEEE
Q 007773          107 SDLQAITV----TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       107 sd~m~I~V----kt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~~gsvI~L~  181 (590)
                      +.+|.|+|    ++.+|.+++++|+++.||.+||++|+.+.++|  +++|+|+|+|+.|. |.++|.+|+|++|++|+|+
T Consensus         5 ~~~m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip--~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~   82 (102)
T d1v5oa_           5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLL   82 (102)
T ss_dssp             SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC--GGGBCEEETTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred             cCCEEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCC--cceEEEEeCCeEeecccCCHHHcCCCCCCEEEEE
Confidence            34688998    77889999999999999999999999999998  99999999999995 6789999999999999998


Q ss_pred             eecCCCcc
Q 007773          182 VRKSAKVR  189 (590)
Q Consensus       182 vrks~kv~  189 (590)
                      .++....+
T Consensus        83 ~r~~~~~~   90 (102)
T d1v5oa_          83 QKDNVGLR   90 (102)
T ss_dssp             BCCCCCCS
T ss_pred             ECCCCCCC
Confidence            77665433

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.8e-14  Score=124.97  Aligned_cols=78  Identities=21%  Similarity=0.480  Sum_probs=72.7

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceE---------------EEEcCcccccCCccccccC
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQK---------------LVFEGRELARSNSRVRDYG   93 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~Qr---------------Lvf~Gk~L~~D~~tL~dyg   93 (590)
                      +.+.|+|+| +++|++++++|++++||.+||.+|+++.|+|+++|+               |+|.|+.|.+|..+|.+||
T Consensus         4 gss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~g   83 (105)
T d1v2ya_           4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG   83 (105)
T ss_dssp             CCCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred             CCCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcC
Confidence            368899999 899999999999999999999999999999999997               9999999985557999999


Q ss_pred             cccccceeEEeeec
Q 007773           94 LADGNVLHLVLRLS  107 (590)
Q Consensus        94 I~~gstL~LvlrLs  107 (590)
                      |++|++|||+.+++
T Consensus        84 I~~g~~l~lv~r~~   97 (105)
T d1v2ya_          84 IRNRDEVSFIKKLG   97 (105)
T ss_dssp             CCSSEEEEEEECSC
T ss_pred             CCCCCEEEEEEecC
Confidence            99999999998874

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=1.3e-13  Score=121.51  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHH--------HhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCE-
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIA--------KKGREFVDLKNQELICDGEELEDQRLITDICKRNEAV-  177 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~--------~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsv-  177 (590)
                      .+.|.|+|++.+|+++.++|++++||.+||++|.        ++.+++  +++|+|+|+|+.|+|+++|.+|+|.+|++ 
T Consensus        14 ~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~--~~~qRLiy~Gk~L~D~~tL~~~~i~~g~~~   91 (116)
T d1wgha_          14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSS--PNILRLIYQGRFLHGNVTLGALKLPFGKTT   91 (116)
T ss_dssp             SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCC--TTTEEEEETTEEECSSCBTTTTTCCSSCEE
T ss_pred             CCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCC--hHHeEEEECCEEecCCCCHHHcCCCCCCEE
Confidence            4568899999999999999999999999999994        455666  99999999999999999999999999986 


Q ss_pred             -EEEEeecCC
Q 007773          178 -IHLLVRKSA  186 (590)
Q Consensus       178 -I~L~vrks~  186 (590)
                       |||++|+..
T Consensus        92 ~lhlv~r~~~  101 (116)
T d1wgha_          92 VMHLVARETL  101 (116)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEeCCCC
Confidence             777777554

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2e-13  Score=114.23  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=64.4

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      ++|+.+.++|++++||.+||++|+++.|+|  +++|+|+|+|+.|+|+++|++|+|++|++|||++|..
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip--~~~q~Li~~Gk~L~D~~tL~dY~I~~gsti~l~~r~R   85 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMP--AGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKER   85 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCC--TTTEEEEETTEEECTTSBHHHHTCCTTEEEEEEESCC
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCC--hHHEEEEeCCcCcCCCCCHHHcCCCCCCEEEEEEecC
Confidence            689999999999999999999999999998  9999999999999999999999999999999998853

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.7e-13  Score=120.73  Aligned_cols=78  Identities=23%  Similarity=0.299  Sum_probs=70.0

Q ss_pred             CCCCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHH--------HHhhCCCccceEEEEcCcccccCCccccccCcccc
Q 007773           27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRI--------QSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADG   97 (590)
Q Consensus        27 ~~~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kI--------q~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~g   97 (590)
                      ...+.+.|+|+| +++|+++.+.|++++||.+||.+|        +++.|+++++|||+|.|+.|. |+.+|.+|+|.+|
T Consensus        10 ~~~~~~~i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~-D~~tL~~~~i~~g   88 (116)
T d1wgha_          10 SHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH-GNVTLGALKLPFG   88 (116)
T ss_dssp             CCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEEC-SSCBTTTTTCCSS
T ss_pred             CCCCCCeEEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEec-CCCCHHHcCCCCC
Confidence            334578899999 899999999999999999999999        577899999999999999997 9999999999999


Q ss_pred             cc--eeEEee
Q 007773           98 NV--LHLVLR  105 (590)
Q Consensus        98 st--L~Lvlr  105 (590)
                      ++  |||++|
T Consensus        89 ~~~~lhlv~r   98 (116)
T d1wgha_          89 KTTVMHLVAR   98 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEeC
Confidence            86  666655

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=3.7e-13  Score=115.61  Aligned_cols=76  Identities=24%  Similarity=0.371  Sum_probs=69.6

Q ss_pred             CCCEEEEE-EeCCeEE-EEEecCCCCHHHHHHHHHHh-----hCCC--ccceEEEEcCcccccCCccccccCccccc---
Q 007773           31 NDSILIFL-SVGGSVI-PMRVMESDSIASVKLRIQSY-----NGFF--VKKQKLVFEGRELARSNSRVRDYGLADGN---   98 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~-~l~V~~sdTV~~LK~kIq~~-----~Gip--~~~QrLvf~Gk~L~~D~~tL~dygI~~gs---   98 (590)
                      .+.|.|+| +++|+.+ ++.|++++||.+||.+|++.     .|+|  +++|||+|+|+.|. |+.+|++|+|..|.   
T Consensus         5 ~~~i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~-D~~tL~dy~i~~g~~~~   83 (101)
T d1se9a_           5 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLE-NSKTVKDYRSPVSNLAG   83 (101)
T ss_dssp             CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECC-TTSBGGGGSCCTTSCTT
T ss_pred             cceEEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEec-CCCCHHHcCCCCCCcCC
Confidence            58899999 8899866 79999999999999999875     7888  88999999999997 99999999999997   


Q ss_pred             ---ceeEEeeec
Q 007773           99 ---VLHLVLRLS  107 (590)
Q Consensus        99 ---tL~LvlrLs  107 (590)
                         ++||++|.+
T Consensus        84 ~~~tmHlVvrpp   95 (101)
T d1se9a_          84 AVTTMHVIIQAP   95 (101)
T ss_dssp             CCEEEEEEECCC
T ss_pred             CceEEEEEeCCC
Confidence               999999875

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=3.5e-13  Score=114.76  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=69.3

Q ss_pred             CCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeecc
Q 007773           30 SNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSD  108 (590)
Q Consensus        30 ~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd  108 (590)
                      +...|+|+| +++|+.+.++|++++||.+||.+|+   .+++.+|+|+|.|+.|.+|..+|.+|+|.+|++|||+++.++
T Consensus         4 ~~s~m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~~~~   80 (95)
T d1wiaa_           4 GSSGINVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG   80 (95)
T ss_dssp             CCCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred             CCCcEEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEcCCC
Confidence            368899999 8899999999999999999999986   457899999999999975678999999999999999987654


Q ss_pred             c
Q 007773          109 L  109 (590)
Q Consensus       109 ~  109 (590)
                      .
T Consensus        81 ~   81 (95)
T d1wiaa_          81 A   81 (95)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=4.5e-14  Score=122.49  Aligned_cols=78  Identities=19%  Similarity=0.234  Sum_probs=71.5

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEE---------------EEECCEEcCCC-Cccccc
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQE---------------LICDGEELEDQ-RLITDI  170 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~---------------Lif~Gk~LeD~-~tL~dy  170 (590)
                      +.+|+|+|++.+|+++.++|+++.||.+||++|++..+++  +++|+               |+|+|+.|.|+ .+|.+|
T Consensus         5 ss~M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip--~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~   82 (105)
T d1v2ya_           5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK--QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY   82 (105)
T ss_dssp             CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH--HHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred             CCcEEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC--HHHhcccccccccccccceEEEECCEECcccCCCHHHc
Confidence            4579999999999999999999999999999999999998  88887               99999999765 589999


Q ss_pred             CCCCCCEEEEEeecCC
Q 007773          171 CKRNEAVIHLLVRKSA  186 (590)
Q Consensus       171 ~I~~gsvI~L~vrks~  186 (590)
                      +|+++++|||+.|...
T Consensus        83 gI~~g~~l~lv~r~~~   98 (105)
T d1v2ya_          83 GIRNRDEVSFIKKLGQ   98 (105)
T ss_dssp             TCCSSEEEEEEECSCS
T ss_pred             CCCCCCEEEEEEecCC
Confidence            9999999999987543

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=7e-13  Score=112.97  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=70.2

Q ss_pred             cccccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCC
Q 007773          107 SDLQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSA  186 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~  186 (590)
                      +..++|+||+.+++.+.++|++++||.+||++|++..++|  +++|+|+|+|+.|+|. +|++|+|++|++|+|+..+..
T Consensus         5 s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp--~~~QkLi~~Gk~L~d~-tL~~~gi~~g~~i~lv~t~~~   81 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSADA   81 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCC--TTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCCC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCcc--ceeeEEeecCcccCCC-cHHHCCCCCCCEEEEEeeCCc
Confidence            4568999999999888999999999999999999999998  9999999999999986 799999999999999765443

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=9e-13  Score=113.19  Aligned_cols=72  Identities=7%  Similarity=-0.047  Sum_probs=66.3

Q ss_pred             eeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecCCCc
Q 007773          115 TTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKSAKV  188 (590)
Q Consensus       115 kt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks~kv  188 (590)
                      +...|+++.++|+.++||.+||++|+++.+++  +++|+|+|+|+.|+|+.+|++|+|+++++|+++..+....
T Consensus        25 ~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~--~~~qkLi~~Gk~L~d~~tL~~~gI~~~s~i~vi~~~~~~~   96 (100)
T d1wjua_          25 RLKKDRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQSSG   96 (100)
T ss_dssp             TTCCSSSEEEEEESSSBHHHHHHHHHHHTTCC--STTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCCCC
T ss_pred             ccCCCeEEEEEECCCcHHHHHHHHHHHHHCCC--CeeEEEEEcccCcCCCcCHHHcCCCCCCEEEEEEcCCCCC
Confidence            55789999999999999999999999999998  9999999999999999999999999999999887655443

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=108.33  Aligned_cols=74  Identities=16%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             CEEEEEEeCCeEEEEEe-----cCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           33 SILIFLSVGGSVIPMRV-----MESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        33 sM~I~Vtl~G~t~~l~V-----~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      .|.|.|+..+..+.++|     ++++||++||.+|+..+|+|+++|+|+|+|+.|.+|+.+|++|||++|++|+|+.+.
T Consensus         1 gi~i~V~~~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~~   79 (81)
T d1wxva1           1 GLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK   79 (81)
T ss_dssp             SEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred             CEEEEEEECCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEec
Confidence            37899988889999998     478999999999999999999999999999999767889999999999999998764

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=1e-12  Score=111.68  Aligned_cols=75  Identities=15%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             CCCCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           30 SNDSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        30 ~~~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      +.+.|.|.|..+++++.|+|++++||.+||.+|+..+|+|+++|+|+|.|+ |. |+.+|.+|+|++|++|+|+.+.
T Consensus        14 ~~~~i~v~V~~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~-D~~tL~~~~I~~gs~i~lvgs~   88 (95)
T d1v86a_          14 GKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VP-EDKTLREIKVTSGAKIMVVGST   88 (95)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred             CccEEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-cc-CCCcHHHCCCCCCCEEEEEecC
Confidence            467899999889999999999999999999999999999999999999997 86 8999999999999999998654

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.31  E-value=9.9e-13  Score=115.00  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=66.0

Q ss_pred             ccceeee-ccceeeEEEeec-CCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeec
Q 007773          110 QAITVTT-VCGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRK  184 (590)
Q Consensus       110 m~I~Vkt-~~Gk~~~i~Vd~-s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrk  184 (590)
                      ++|.|++ .+|+++.++|.+ ++||.+||++|+++.|+|  +++|+|+|+|+.|+|+++|++|+|+++++|||++|-
T Consensus        30 i~V~v~~~~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip--~~~QrLi~~Gk~L~D~~tL~~ynI~~gsti~L~lr~  104 (111)
T d1we6a_          30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE  104 (111)
T ss_dssp             EEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC--TTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred             EEEEcccCCCCeEEEEEecCCccHHHHHHHHHHHHHCCC--ccceEEEEeeEEccccCCHHHcCCCCCCEEEEEeeC
Confidence            3444544 369999999987 999999999999999988  999999999999999999999999999999999983

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.2e-12  Score=111.59  Aligned_cols=74  Identities=9%  Similarity=0.121  Sum_probs=66.9

Q ss_pred             CCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      .+.|+|+| ..+++.+.++|++++||.+||.+|+..+|+|+++|+|+|.|+.|. |+ +|.+|||++|++|+|+...
T Consensus         5 s~~~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~-d~-tL~~~gi~~g~~i~lv~t~   79 (96)
T d1wgga_           5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLK-DD-DWGNIKMKNGMTVLMMGSA   79 (96)
T ss_dssp             CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECC-SS-CCCSCCCCSSCEEECCCCC
T ss_pred             CCceEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccC-CC-cHHHCCCCCCCEEEEEeeC
Confidence            57899999 556666789999999999999999999999999999999999997 65 7999999999999997543

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.1e-12  Score=108.38  Aligned_cols=77  Identities=25%  Similarity=0.354  Sum_probs=65.0

Q ss_pred             ccccceeeeccce--eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC--CEEEEEee
Q 007773          108 DLQAITVTTVCGK--VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNE--AVIHLLVR  183 (590)
Q Consensus       108 d~m~I~Vkt~~Gk--~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~g--svI~L~vr  183 (590)
                      ..|+|+|++.+++  .+.++|++++||.+||++|++..+...|+++|+|+|+|+.|+|+.+|++|....+  .+|||+++
T Consensus         6 ~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred             CcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCCCCHHHhCcccCCCCEEEEEec
Confidence            3588999998775  4889999999999999999999762224999999999999999999999986544  49999875


Q ss_pred             c
Q 007773          184 K  184 (590)
Q Consensus       184 k  184 (590)
                      .
T Consensus        86 ~   86 (93)
T d1wgda_          86 V   86 (93)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2e-12  Score=108.66  Aligned_cols=76  Identities=16%  Similarity=0.334  Sum_probs=70.1

Q ss_pred             CCCEEEEEEeCCeEEEE-EecCCCCHHHHHHHHHHhhCCCccceEEE---EcCcccccCCccccccCcccccceeEEeee
Q 007773           31 NDSILIFLSVGGSVIPM-RVMESDSIASVKLRIQSYNGFFVKKQKLV---FEGRELARSNSRVRDYGLADGNVLHLVLRL  106 (590)
Q Consensus        31 ~~sM~I~Vtl~G~t~~l-~V~~sdTV~~LK~kIq~~~Gip~~~QrLv---f~Gk~L~~D~~tL~dygI~~gstL~LvlrL  106 (590)
                      ...|.|+|+..|+.+.+ +|++++||.+||.+|+.++|+|+++|+|+   |.|+.|. |+.+|.+|+|++|++|+|+.+.
T Consensus         5 s~~~~i~Vk~~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~-D~~tL~~~~i~~g~~i~lv~s~   83 (90)
T d1v5ta_           5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAE-NDVKLGALKLKPNTKIMMMGTR   83 (90)
T ss_dssp             CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECC-TTSBHHHHTCCTTEEEEEECCC
T ss_pred             CCcEEEEEEECCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCC-CcCcHHHcCCCCCCEEEEEeeC
Confidence            57899999888888888 69999999999999999999999999999   6899998 8999999999999999998764


Q ss_pred             c
Q 007773          107 S  107 (590)
Q Consensus       107 s  107 (590)
                      .
T Consensus        84 ~   84 (90)
T d1v5ta_          84 E   84 (90)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=4.8e-12  Score=109.06  Aligned_cols=73  Identities=18%  Similarity=0.220  Sum_probs=62.9

Q ss_pred             EEE--EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccc-------cceeEEeee
Q 007773           36 IFL--SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADG-------NVLHLVLRL  106 (590)
Q Consensus        36 I~V--tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~g-------stL~LvlrL  106 (590)
                      |||  ...+.++.++|++++||.+||.+|+.+.|+++++|+|+|+|++|. |+.+|++|||.++       .+++|.++.
T Consensus         2 ifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~-D~~TL~dYgI~~~~~~~~~~~~~~l~~~~   80 (103)
T d2c9wb1           2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLD-DGKTLGECGFTSQTARPQAPATVGLAFRA   80 (103)
T ss_dssp             EEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECC-TTSBHHHHTCCTTTSBTTBCEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcC-CCCCHHHcCCCcccccccCCcEEEEEEec
Confidence            555  456678999999999999999999999999999999999999997 9999999999654       467777665


Q ss_pred             ccc
Q 007773          107 SDL  109 (590)
Q Consensus       107 sd~  109 (590)
                      .+.
T Consensus        81 ~~~   83 (103)
T d2c9wb1          81 DDT   83 (103)
T ss_dssp             TTE
T ss_pred             CCC
Confidence            543

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.5e-12  Score=110.38  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=68.6

Q ss_pred             CCCCEEEEEE---eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           30 SNDSILIFLS---VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        30 ~~~sM~I~Vt---l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      ...+|+|+|.   ..|++++++|.+++||.+||.+|+++.|+|+.+|+|+|+|+.|. |+.+|.+|||+++++|+++..
T Consensus        14 g~ati~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~-d~~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQ-LGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             CEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECC-TTSBHHHHTCCSSEEEEEECC
T ss_pred             ceEEEEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcC-CCcCHHHcCCCCCCEEEEEEc
Confidence            3568888882   57899999999999999999999999999999999999999998 899999999999999987653

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.8e-12  Score=102.82  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             cccceeeeccceeeEEEe-----ecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcC-CCCcccccCCCCCCEEEEEe
Q 007773          109 LQAITVTTVCGKVFEFHV-----ERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELE-DQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~V-----d~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~Le-D~~tL~dy~I~~gsvI~L~v  182 (590)
                      +|+|.|+. .+..+.++|     ++++||++||++|+...|+|  +++|+|+|+|+.|. |..+|++|++++|++|+|+.
T Consensus         1 gi~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp--~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~   77 (81)
T d1wxva1           1 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP--QSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG   77 (81)
T ss_dssp             SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC--TTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred             CEEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcC--HHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEE
Confidence            47788864 567788888     56889999999999999998  99999999999995 67899999999999999998


Q ss_pred             ecC
Q 007773          183 RKS  185 (590)
Q Consensus       183 rks  185 (590)
                      |++
T Consensus        78 ~~~   80 (81)
T d1wxva1          78 KKN   80 (81)
T ss_dssp             CCS
T ss_pred             ecC
Confidence            875

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=6.5e-12  Score=105.47  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=68.5

Q ss_pred             cccccceeeeccceeeEE-EeecCCcHHHHHHHHHHhcCCCCCCCcEEEE---ECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          107 SDLQAITVTTVCGKVFEF-HVERGRNVGYVKQQIAKKGREFVDLKNQELI---CDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       107 sd~m~I~Vkt~~Gk~~~i-~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li---f~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      +..|.|+|+. .|+.+.+ +|++++||.+||++|+++.++|  +++|+|+   |.|+.|+|+.+|.+|+|++|++|+|+.
T Consensus         5 s~~~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp--~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv~   81 (90)
T d1v5ta_           5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG   81 (90)
T ss_dssp             CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred             CCcEEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCC--HHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEEe
Confidence            4568999996 5667777 7999999999999999999998  9999999   699999999999999999999999987


Q ss_pred             ecC
Q 007773          183 RKS  185 (590)
Q Consensus       183 rks  185 (590)
                      ++.
T Consensus        82 s~~   84 (90)
T d1v5ta_          82 TRE   84 (90)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            654

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.3e-11  Score=104.49  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=65.7

Q ss_pred             CCCEEEEE-EeCCe--EEEEEecCCCCHHHHHHHHHHhhC--CCccceEEEEcCcccccCCccccccCcc--cccceeEE
Q 007773           31 NDSILIFL-SVGGS--VIPMRVMESDSIASVKLRIQSYNG--FFVKKQKLVFEGRELARSNSRVRDYGLA--DGNVLHLV  103 (590)
Q Consensus        31 ~~sM~I~V-tl~G~--t~~l~V~~sdTV~~LK~kIq~~~G--ip~~~QrLvf~Gk~L~~D~~tL~dygI~--~gstL~Lv  103 (590)
                      ...|+|+| +.+++  .++++|++++||.+||.+|+++.+  +|+++|||+|+|+.|. |+.+|++|...  .+.+|||+
T Consensus         5 s~~i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~-D~~~L~d~~~~~~~~~viHLV   83 (93)
T d1wgda_           5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLL-DHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECC-SSSCHHHHSCSSSCSEEEEEE
T ss_pred             CCcEEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEcc-CCCCHHHhCcccCCCCEEEEE
Confidence            56799999 56554  589999999999999999999965  9999999999999997 99999999764  44599999


Q ss_pred             eeec
Q 007773          104 LRLS  107 (590)
Q Consensus       104 lrLs  107 (590)
                      ++..
T Consensus        84 ~~~~   87 (93)
T d1wgda_          84 CNVK   87 (93)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            8764

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.5e-11  Score=105.85  Aligned_cols=71  Identities=15%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             cceeeeccce-eeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCC-------CEEEEEe
Q 007773          111 AITVTTVCGK-VFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNE-------AVIHLLV  182 (590)
Q Consensus       111 ~I~Vkt~~Gk-~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~g-------svI~L~v  182 (590)
                      +|||++..++ ++.++|++++||.+||++|+++.|++  +++|+|+|+|++|+|+++|+||||.++       ++++|.+
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip--~~~QrLi~~Gk~L~D~~TL~dYgI~~~~~~~~~~~~~~l~~   78 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRP--PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF   78 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCC--cccEEEEECCEEcCCCCCHHHcCCCcccccccCCcEEEEEE
Confidence            3677776664 67899999999999999999999998  999999999999999999999999544       4666655


Q ss_pred             e
Q 007773          183 R  183 (590)
Q Consensus       183 r  183 (590)
                      +
T Consensus        79 ~   79 (103)
T d2c9wb1          79 R   79 (103)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=1.7e-11  Score=103.78  Aligned_cols=85  Identities=21%  Similarity=0.203  Sum_probs=66.8

Q ss_pred             ccceeEEeeeccccc---ceeeeccceeeEEEeecCCcHHHHHHHHHHhcC--CCCCCCcEEEEECCEEcCCCCcccccC
Q 007773           97 GNVLHLVLRLSDLQA---ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGR--EFVDLKNQELICDGEELEDQRLITDIC  171 (590)
Q Consensus        97 gstL~LvlrLsd~m~---I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~g--i~~~~~~Q~Lif~Gk~LeD~~tL~dy~  171 (590)
                      -+..|+.+++.+...   ..|+..+ ......+..+.||.+||++|+.+..  .| ++++|+|+|+|++|+|+.+|++|+
T Consensus         3 ~s~~~~~~~l~~~p~~pk~~i~~p~-~~~~~~~~~~~tV~~lK~~i~~~~~~~~P-~p~~~rLIy~Gk~L~D~~tL~~y~   80 (94)
T d1x1ma1           3 LSDWHLAVKLADQPLAPKSILQLPE-TELGEYSLGGYSISFLKQLIAGKLQESVP-DPELIDLIYCGRKLKDDQTLDFYG   80 (94)
T ss_dssp             CCSCCEEEEETTCTTSCCEEECCCC-CSSCSSCCCCCBHHHHHHHHHHHCTTTCC-CSSSEEEEETTEECCTTCBHHHHT
T ss_pred             cccceEEEEEccCCCCCcceEECCC-CccCccCCCccCHHHHHHHHHHHcccCCC-ChhheEEEECCeEECCCccHHHcC
Confidence            467899999988743   3444333 2222234457899999999999975  33 369999999999999999999999


Q ss_pred             CCCCCEEEEEee
Q 007773          172 KRNEAVIHLLVR  183 (590)
Q Consensus       172 I~~gsvI~L~vr  183 (590)
                      |++|++|||+.|
T Consensus        81 I~~gstihLV~r   92 (94)
T d1x1ma1          81 IQPGSTVHVLRK   92 (94)
T ss_dssp             CCTTCEEEEEES
T ss_pred             CCCCCEEEEEEe
Confidence            999999999765

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.3e-11  Score=104.83  Aligned_cols=71  Identities=14%  Similarity=0.108  Sum_probs=65.2

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEee
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vr  183 (590)
                      .|.|.|+ .+++++.++|++++||.+||++|+..+++|  +++|+|+|+|+ |+|+.+|.+|+|+++++|+|+.+
T Consensus        17 ~i~v~V~-~~~k~~~i~v~~~~TV~~LK~~I~~~tgvp--~~~q~Li~~g~-l~D~~tL~~~~I~~gs~i~lvgs   87 (95)
T d1v86a_          17 LVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP--PAMQKVMYKGL-VPEDKTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             CEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC--STTCCCBSSSB-CCSSSBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHhCCC--hhHEEEEeccc-ccCCCcHHHCCCCCCCEEEEEec
Confidence            4667777 578999999999999999999999999998  99999999997 99999999999999999999754

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=4.5e-11  Score=101.42  Aligned_cols=77  Identities=19%  Similarity=0.287  Sum_probs=68.0

Q ss_pred             CCCEEEEEEe--CCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc------cccCCccccccCcccccceeE
Q 007773           31 NDSILIFLSV--GGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE------LARSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        31 ~~sM~I~Vtl--~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~------L~~D~~tL~dygI~~gstL~L  102 (590)
                      ...|.|+|+.  ++.....+++++.||.+||.||+..+|+|+.+|+|+|.|+.      |.+|+.+|.+|+|.+|++|||
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihl   84 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV   84 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEE
Confidence            5789999943  55568899999999999999999999999999999999883      445999999999999999999


Q ss_pred             Eeeec
Q 007773          103 VLRLS  107 (590)
Q Consensus       103 vlrLs  107 (590)
                      +.+-+
T Consensus        85 vd~~p   89 (95)
T d1v6ea_          85 IDHSG   89 (95)
T ss_dssp             BCCSC
T ss_pred             EeCCC
Confidence            87654

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.09  E-value=1.5e-10  Score=94.62  Aligned_cols=77  Identities=12%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             CCEEEEEEeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeeccc
Q 007773           32 DSILIFLSVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLSDL  109 (590)
Q Consensus        32 ~sM~I~Vtl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLsd~  109 (590)
                      +.|.|.|..+|+.+.+.|.+++++..||..++++.|+++++|+|+|+|+.|. ++.|+++|+|++|++|++++++.||
T Consensus         3 ~~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~-~~~T~~~~~i~dgd~I~v~~~q~GG   79 (79)
T d1euvb_           3 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQ-ADQTPEDLDMEDNDIIEAHREQIGG   79 (79)
T ss_dssp             SEEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECC-TTCCTTTTTCCTTEEEEEEECCBCC
T ss_pred             cEEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeC-CCCCHHHCCCCCCCEEEEEEeccCC
Confidence            5678888668889999999999999999999999999999999999999998 8999999999999999999998765

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=9.6e-11  Score=99.37  Aligned_cols=79  Identities=13%  Similarity=0.034  Sum_probs=69.5

Q ss_pred             cccccceeee-ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE-------EcCCCCcccccCCCCCCEE
Q 007773          107 SDLQAITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE-------ELEDQRLITDICKRNEAVI  178 (590)
Q Consensus       107 sd~m~I~Vkt-~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk-------~LeD~~tL~dy~I~~gsvI  178 (590)
                      +.++.|+|++ .++..+...++++.||.+||++|+...|+|  +++|+|+|.|+       .++|.++|.+|++++|++|
T Consensus         5 ss~v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip--~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~i   82 (95)
T d1v6ea_           5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI   82 (95)
T ss_dssp             CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEE
T ss_pred             CCcEEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcC--chhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEE
Confidence            4568888887 366678889999999999999999999998  99999999887       5899999999999999999


Q ss_pred             EEEeecCCC
Q 007773          179 HLLVRKSAK  187 (590)
Q Consensus       179 ~L~vrks~k  187 (590)
                      ||+.++++.
T Consensus        83 hlvd~~p~~   91 (95)
T d1v6ea_          83 HVIDHSGSG   91 (95)
T ss_dssp             EEBCCSCCS
T ss_pred             EEEeCCCCC
Confidence            998876643

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=3.8e-10  Score=95.88  Aligned_cols=72  Identities=14%  Similarity=0.199  Sum_probs=62.8

Q ss_pred             CCEEEEEE----eCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc-------cccCCccccccCcccccce
Q 007773           32 DSILIFLS----VGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE-------LARSNSRVRDYGLADGNVL  100 (590)
Q Consensus        32 ~sM~I~Vt----l~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~-------L~~D~~tL~dygI~~gstL  100 (590)
                      ..+.|.|.    .++++++++|.+++||.+||.+|+..+|+|+.+|+|+|.|+.       |.+|+.+|.+|||++|++|
T Consensus         8 ~~iti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I   87 (97)
T d1wjna_           8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCL   87 (97)
T ss_dssp             CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEE
T ss_pred             CeEEEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEE
Confidence            44555553    456889999999999999999999999999999999999873       6668899999999999999


Q ss_pred             eEE
Q 007773          101 HLV  103 (590)
Q Consensus       101 ~Lv  103 (590)
                      ++.
T Consensus        88 ~V~   90 (97)
T d1wjna_          88 LVR   90 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=98.96  E-value=9.2e-10  Score=89.84  Aligned_cols=73  Identities=11%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      +.|.|++ +|+++.+.|.++.++..||+.++++.|++  +++++|+|+|+.|.+..|+++|+++++++|+++++..
T Consensus         5 I~ikv~~-~~~~~~f~v~~~~~~~~l~~~~~~~~~i~--~~~~~l~f~G~~l~~~~T~~~~~i~dgd~I~v~~~q~   77 (79)
T d1euvb_           5 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE--MDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI   77 (79)
T ss_dssp             EEEEEES-SSCEEEEEEETTSCTHHHHHHHHHHTTCC--GGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCB
T ss_pred             EEEEECC-CCeEEEEEECCCCcHHHHHHHHHHHhCCC--hHhEEEEECCEEeCCCCCHHHCCCCCCCEEEEEEecc
Confidence            4566665 67888899999999999999999999998  9999999999999999999999999999999998753

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.1e-09  Score=87.27  Aligned_cols=75  Identities=12%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             cccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEeecC
Q 007773          109 LQAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLVRKS  185 (590)
Q Consensus       109 ~m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~vrks  185 (590)
                      .+.|.|++.+|+.+.+.|.++.++..|+...+++.|++  +++++|+|+|+.|.++.|+.++++++|++|++++++.
T Consensus         2 ~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~--~~~~~f~fdG~~l~~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC--GGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCC--hhHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence            46789999999999999999999999999999999987  9999999999999999999999999999999998754

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.86  E-value=2.1e-09  Score=90.05  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=62.7

Q ss_pred             CCEEEEEEeC--CeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcc------cccCCccccccCcccccceeEE
Q 007773           32 DSILIFLSVG--GSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRE------LARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        32 ~sM~I~Vtl~--G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~------L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      +.+.++|+.+  +.....++.++.||.+||.+|+..+|+|+..|+|+|.|+.      |.+|+.+|.+|||.+|++||++
T Consensus         3 ~~~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           3 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             cEEEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            4567888544  3446778999999999999999999999999999998873      6668999999999999999985


Q ss_pred             e
Q 007773          104 L  104 (590)
Q Consensus       104 l  104 (590)
                      =
T Consensus        83 d   83 (90)
T d1t0ya_          83 D   83 (90)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=2e-09  Score=91.33  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=58.1

Q ss_pred             ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEE-------cC-CCCcccccCCCCCCEEEEEee
Q 007773          117 VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEE-------LE-DQRLITDICKRNEAVIHLLVR  183 (590)
Q Consensus       117 ~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~-------Le-D~~tL~dy~I~~gsvI~L~vr  183 (590)
                      .+++.++++|..+.||.+||.+|+..+|+|  +++|+|+|.|+.       |+ |.++|.+|+|++|++|++...
T Consensus        20 ~~~~~~~~kv~~~~TV~~LK~~i~~~~gip--~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~~~   92 (97)
T d1wjna_          20 PERQILEKQLPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS   92 (97)
T ss_dssp             SSSCCEEEEEETTSBHHHHHHHHHTTTTCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred             CCCceEEEEcCCCCCHHHHHHHHHHHHCcC--hHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEEeC
Confidence            457889999999999999999999999998  999999998873       43 789999999999999997543

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.7e-09  Score=85.17  Aligned_cols=75  Identities=17%  Similarity=0.332  Sum_probs=70.2

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEeeec
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLRLS  107 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~LvlrLs  107 (590)
                      +.|.|.| +.+|+.+.+.|.++.++..|+...+++.|+++.+++|+|+|+.|. ++.|++++++++|++|+++++..
T Consensus         1 e~I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~-~~~T~~~l~~edgD~Idv~~~q~   76 (77)
T d2uyzb1           1 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIA-DNHTPKELGMEEEDVIEVYQEQT   76 (77)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECC-TTCCHHHHTCCTTEEEEEEECCC
T ss_pred             CEEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECC-CCCCHHHcCCCCCCEEEEEEecC
Confidence            3588899 789999999999999999999999999999999999999999998 88999999999999999998754

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=3.2e-09  Score=89.52  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=49.7

Q ss_pred             ecCCCCHHHHHHHHHHhh--CCC-ccceEEEEcCcccccCCccccccCcccccceeEEee
Q 007773           49 VMESDSIASVKLRIQSYN--GFF-VKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVLR  105 (590)
Q Consensus        49 V~~sdTV~~LK~kIq~~~--Gip-~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvlr  105 (590)
                      +..+.||.+||++|+++.  +.| +++|+|+|+|++|. |+.+|++|||++|++|||+.|
T Consensus        34 ~~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~-D~~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLK-DDQTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECC-TTCBHHHHTCCTTCEEEEEES
T ss_pred             CCCccCHHHHHHHHHHHcccCCCChhheEEEECCeEEC-CCccHHHcCCCCCCEEEEEEe
Confidence            345889999999999885  444 68999999999997 999999999999999999876

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.69  E-value=1.7e-08  Score=84.31  Aligned_cols=75  Identities=12%  Similarity=0.093  Sum_probs=62.1

Q ss_pred             ccceeee-ccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCE-------EcCCCCcccccCCCCCCEEEEE
Q 007773          110 QAITVTT-VCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGE-------ELEDQRLITDICKRNEAVIHLL  181 (590)
Q Consensus       110 m~I~Vkt-~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk-------~LeD~~tL~dy~I~~gsvI~L~  181 (590)
                      ..+.|.+ .++..+...+.++.||.+||++|+..+|+|  +..|+|+|.|+       .++|.++|.+|++++|++||++
T Consensus         5 ~~l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip--~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvv   82 (90)
T d1t0ya_           5 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV   82 (90)
T ss_dssp             EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred             EEEEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCC--hhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEE
Confidence            4455554 234456777899999999999999999998  99999999886       4678999999999999999997


Q ss_pred             eecCC
Q 007773          182 VRKSA  186 (590)
Q Consensus       182 vrks~  186 (590)
                      -+.++
T Consensus        83 d~~~~   87 (90)
T d1t0ya_          83 DVTGG   87 (90)
T ss_dssp             ECTTC
T ss_pred             eCCCC
Confidence            66554

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.5e-05  Score=60.99  Aligned_cols=69  Identities=13%  Similarity=0.258  Sum_probs=64.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L  180 (590)
                      +.|.|+..+|+.+.+.|.++.+...|...-++..+++  +...+++|+|+.+....|..++++++|++|.+
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~--~~~~~f~fdG~~i~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLS--MRQIRFRFDGQPINETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCC--TTTCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCC--ccceEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence            3567777889999999999999999999999999987  89999999999999999999999999999986

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00011  Score=57.94  Aligned_cols=69  Identities=12%  Similarity=0.318  Sum_probs=63.5

Q ss_pred             EEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEE
Q 007773           34 ILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        34 M~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lv  103 (590)
                      |.|.| ..+|+.+.+.|..+.++..|...-.+..|+++.+.+++|+|+.|. .+.|.+++++++|++|.+.
T Consensus         2 I~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~-~~~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPIN-ETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECC-TTCCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcC-CCCCHHHcCCCCCCEEEEE
Confidence            56777 568899999999999999999999999999999999999999997 8899999999999998763

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.46  E-value=7.3e-05  Score=61.55  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=55.1

Q ss_pred             EEEEeCCeEEEEEec-CCCCHHHHHHHHHHhhCCCccceEEEEc--------------CcccccCCccccccCcccccce
Q 007773           36 IFLSVGGSVIPMRVM-ESDSIASVKLRIQSYNGFFVKKQKLVFE--------------GRELARSNSRVRDYGLADGNVL  100 (590)
Q Consensus        36 I~Vtl~G~t~~l~V~-~sdTV~~LK~kIq~~~Gip~~~QrLvf~--------------Gk~L~~D~~tL~dygI~~gstL  100 (590)
                      |.|.....+..++|+ ++.|+.+||.+|+++.++|.++|.|..+              =..|.+|..+|+++||.+|+.|
T Consensus         3 iRiRsrdG~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsiv   82 (94)
T d1wf9a1           3 LRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMV   82 (94)
T ss_dssp             EEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEE
T ss_pred             EEEEecCCceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEE
Confidence            445334457788886 4789999999999999999999999653              2237767788999999999999


Q ss_pred             eEEe
Q 007773          101 HLVL  104 (590)
Q Consensus       101 ~Lvl  104 (590)
                      +|..
T Consensus        83 yL~y   86 (94)
T d1wf9a1          83 YLAY   86 (94)
T ss_dssp             ECCC
T ss_pred             EEEe
Confidence            9854

>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain {Physarum polycephalum [TaxId: 5791]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Actin-fragmin kinase, catalytic domain
domain: Actin-fragmin kinase, catalytic domain
species: Physarum polycephalum [TaxId: 5791]

Probab=97.20  E-value=6.6e-05  Score=74.96  Aligned_cols=136  Identities=21%  Similarity=0.296  Sum_probs=88.8

Q ss_pred             cccCCCCCcEEEEEeCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcCCCccCCCchhhhhhhhhhccCCCCccccc
Q 007773          273 IPSSEGSGGAYFMQDSSGQKYISVFKPMDEEPMSVNNPRGLPISVDGEGLKKGTRAGEGALREVAAYILDHPRDATYSLH  352 (590)
Q Consensus       273 ~~~~~Gs~Gsyf~~~~~g~~~~aVFKP~deEp~~~~nP~~~~~~~~~~g~~~g~~~g~g~~rEvAAylLD~~~~~~~~~~  352 (590)
                      +++..||+|++|+...+|   +.|-|...-                             ...|+=+|.|-+         
T Consensus        75 ~~s~~Gs~Gv~FV~~e~g---aiVlK~s~t-----------------------------ta~E~y~~eLAr---------  113 (342)
T d1cjaa_          75 ERSEKGTEGLFFVETESG---VFIVKRSTN-----------------------------IESETFCSLLCM---------  113 (342)
T ss_dssp             EECCSTTSCEEEEEESSC---EEEEECCTT-----------------------------HHHHHHHHHHHH---------
T ss_pred             EEeecCCceEEEEEcCCc---eEEEecCCc-----------------------------hHHHHHHHHHHH---------
Confidence            456789999999987666   788887432                             355999999985         


Q ss_pred             ccccCCCCCCceEEEEecccCccCC----------CCCCCCCCCccceEEeecccccCCcccCCCC----CCC---hhhh
Q 007773          353 DEERGFAGVPPTVMVRCLHKGFNHP----------NGYKHDLENVKIGSLQMFVENVGSCEEMGPR----AFP---VDEV  415 (590)
Q Consensus       353 ~~~~gf~~VP~T~lv~~~~~~f~~~----------~~~~~~~~~~k~GSlQ~fv~~~~~~~~~~~~----~f~---~~ev  415 (590)
                        .||. -||..++++-+...|.--          +...+..+..--+-+|.|+++.. ..+.+..    .|.   ..++
T Consensus       114 --~LGv-pvPqmRvI~~~~~E~~~~~~~~l~~~e~d~~I~sel~~A~~liMeYvpG~~-l~e~~~~~a~~~fs~~~l~~L  189 (342)
T d1cjaa_         114 --RLGL-HAPKVRVVSSNSEEGTNMLECLAAIDKSFRVITTLANQANILLMELVRGIT-LNKLTTTSAPEVLTKSTMQQL  189 (342)
T ss_dssp             --HHTC-CCCCEEEEESSSHHHHHHHHHHHHHCSSSCHHHHHTTCSEEEEEECCCEEE-STTCCSSSHHHHSCHHHHHHH
T ss_pred             --HhCC-CCCceEEecCCCHHHHHHHHHHhcCCChhHHHHHHHhcccceeeeccCCcc-ccccccccchhhhcHHHHHHh
Confidence              6786 688888886333221100          00001112223578899998743 3333322    232   3467


Q ss_pred             hheeeeeeeeecCCC---------CCCcEEEeccCCCceEEEeeccCCcC
Q 007773          416 HKISVLDIRLANTDR---------HAGNILVSKDEGGQIKLVPIDHGYCL  456 (590)
Q Consensus       416 ~ki~ilD~~i~N~DR---------~~gNiLv~~~~~g~~~l~pIDhGl~f  456 (590)
                      =||..||+.|+|-||         |..|+|+..+  |. .+++||-|...
T Consensus       190 GkIiaFDifInN~DR~PL~Wrn~GN~~Niml~~n--~~-~~~~IDs~i~~  236 (342)
T d1cjaa_         190 GSLMALDVIVNNSDRLPIAWTNEGNLDNIMLSER--GA-TVVPIDSKIIP  236 (342)
T ss_dssp             HHHHHHHHHHTCCSSSCSSSCSCCCGGGEEEESB--TT-CEEECSCCCCC
T ss_pred             hhHHHHHHHHcCCccccccccCCCCccceEEecC--Cc-EEEEecCCccc
Confidence            789999999999999         4456999764  43 39999988753

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.16  E-value=0.00021  Score=58.79  Aligned_cols=68  Identities=16%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             ceeeeccceeeEEEeec-CCcHHHHHHHHHHhcCCCCCCCcEEEEEC--------------CEEcC-CCCcccccCCCCC
Q 007773          112 ITVTTVCGKVFEFHVER-GRNVGYVKQQIAKKGREFVDLKNQELICD--------------GEELE-DQRLITDICKRNE  175 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~Vd~-s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~--------------Gk~Le-D~~tL~dy~I~~g  175 (590)
                      |-||+.+| +..++|+. +.||.+||++|++..++|  .++|.|..+              -..|. |..+|+.++|.+|
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VP--v~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hG   79 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   79 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCC--cccceeecChhhhccCCccccchhhhccCCccCHHHcCccCc
Confidence            44566666 45678864 679999999999999998  899999553              23354 4666999999999


Q ss_pred             CEEEEEe
Q 007773          176 AVIHLLV  182 (590)
Q Consensus       176 svI~L~v  182 (590)
                      +.|+|.-
T Consensus        80 sivyL~y   86 (94)
T d1wf9a1          80 SMVYLAY   86 (94)
T ss_dssp             CEEECCC
T ss_pred             eEEEEEe
Confidence            9999854

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0097  Score=47.06  Aligned_cols=69  Identities=12%  Similarity=0.030  Sum_probs=63.6

Q ss_pred             ceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEECCEEcCCCCcccccCCCCCCEEEEEe
Q 007773          112 ITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELICDGEELEDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       112 I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif~Gk~LeD~~tL~dy~I~~gsvI~L~v  182 (590)
                      |.|=+.+|+..++.|.++.++.++-+..++++|..  +++..|.|+++.|+-...+.-.|+.+|+.+.|+-
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~--~~~~~Lkh~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFN--PSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCC--GGGCEEEETTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCC--hhHceeeeCCEEcCccceeeecCCCCCCEEEEEE
Confidence            55667889999999999999999999999999987  8999999999999999999999999999999864

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.016  Score=45.82  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=62.6

Q ss_pred             EEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEEEcCcccccCCccccccCcccccceeEEe
Q 007773           36 IFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLVFEGRELARSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        36 I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLvf~Gk~L~~D~~tL~dygI~~gstL~Lvl  104 (590)
                      |.| ..+|+..++.|.|+.|+.++-+..-+++|+.+++-.|.|+++.|. -+..++-.|+.+|..+.|+.
T Consensus         3 V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ld-Lsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           3 VSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             EEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEEC
T ss_pred             EEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcC-ccceeeecCCCCCCEEEEEE
Confidence            456 678999999999999999999999999999999999999999996 88999999999999998864

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.17  E-value=0.29  Score=39.04  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhh-CCCccceEEEEc--CcccccCCccccccCcccc
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYN-GFFVKKQKLVFE--GRELARSNSRVRDYGLADG   97 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~-Gip~~~QrLvf~--Gk~L~~D~~tL~dygI~~g   97 (590)
                      ....|.| ..+|+.+...+..++||.+|..-+.... +.....-.|+..  -+.|.+++.+|.+.|+.+.
T Consensus        13 p~t~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s   82 (89)
T d1i42a_          13 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA   82 (89)
T ss_dssp             CCEEEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCCS
T ss_pred             CcEEEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcCc
Confidence            3567888 6789999999999999999999998764 566666777754  6678878899999999854

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.74  E-value=0.26  Score=39.64  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=57.7

Q ss_pred             CCCCCCCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc-cCCccccccCcccccceeE
Q 007773           27 EKLSNDSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA-RSNSRVRDYGLADGNVLHL  102 (590)
Q Consensus        27 ~~~~~~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~-~D~~tL~dygI~~gstL~L  102 (590)
                      .....+.++|.| ..+|+.+.-+...++||.+|..-|.... .....-.|+  |-.+.+. +.+.||++.|+....+|++
T Consensus        10 ~~~~~~~~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~-~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v   88 (96)
T d2cr5a1          10 SETAEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNV   88 (96)
T ss_dssp             CSSCSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEE
T ss_pred             CCCCCCeEEEEEECCCCCEEEEEECCcccHHHHHHHHHHhc-cCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEE
Confidence            333456789999 5688999999999999999999997654 444555666  3356664 3468999999998888876


Q ss_pred             Ee
Q 007773          103 VL  104 (590)
Q Consensus       103 vl  104 (590)
                      --
T Consensus        89 ~~   90 (96)
T d2cr5a1          89 EE   90 (96)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.52  Score=36.79  Aligned_cols=71  Identities=21%  Similarity=0.262  Sum_probs=56.3

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeEE
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLV  103 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~Lv  103 (590)
                      ...+|.| ..+|+.+.-+...++||.+|..-|... +.+.....|+  |-.+.+.  +.+.+|++.|+....+|++-
T Consensus         4 ~~~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_           4 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            4467888 567889999999999999999999874 7777777776  4566663  35689999999988888764

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.56  Score=36.58  Aligned_cols=68  Identities=12%  Similarity=0.165  Sum_probs=53.1

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L---eD~~tL~dy~I~~gsvI~L  180 (590)
                      .+|.||..+|+.+.-....++||.+|.+-|... +..  +....|+  |-.+.+   +...+|.+.|+...++|++
T Consensus         6 ~~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~--~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~v   78 (82)
T d1h8ca_           6 SKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFP--WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL   78 (82)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCC--SSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCC--CCceEEEecCcccccccccccCCHHHCCCCCCCEEEE
Confidence            346667777777877888999999999999875 434  5667776  577888   3568999999988888875

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.99  E-value=0.91  Score=35.95  Aligned_cols=65  Identities=11%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             cceeeeccceeeEEEeecCCcHHHHHHHHHHhc-CCCCCCCcEEEEEC--CEEc-CCCCcccccCCCCCCE
Q 007773          111 AITVTTVCGKVFEFHVERGRNVGYVKQQIAKKG-REFVDLKNQELICD--GEEL-EDQRLITDICKRNEAV  177 (590)
Q Consensus       111 ~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~-gi~~~~~~Q~Lif~--Gk~L-eD~~tL~dy~I~~gsv  177 (590)
                      .|.||..+|+.+......+++|.+|.+-+.... +..  .....|+..  -+.| ++..+|.+.|+.+.++
T Consensus        16 ~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~--~~~f~L~t~~Prr~l~d~~~TL~e~gL~~s~v   84 (89)
T d1i42a_          16 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA--ATSFVLMTTFPNKELADENQTLKEANLLNAVI   84 (89)
T ss_dssp             EEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTS--SCCEEEEETTTTEECCCCSSCSGGGTTCCSEE
T ss_pred             EEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCC--CCCEEEecCCCCcccCCCcCcHHHCCCcCceE
Confidence            455666677778888889999999999998764 333  556778754  6777 4588999999985433

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.81  E-value=1.1  Score=35.70  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEEE--CCEEc--CCCCcccccCCCCCCEEEEEe
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELIC--DGEEL--EDQRLITDICKRNEAVIHLLV  182 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Lif--~Gk~L--eD~~tL~dy~I~~gsvI~L~v  182 (590)
                      .+|.||..+|+.+.-....++||.+|..-+..... .  .....|+.  -.+.+  +...||.+.|+.+.++|++--
T Consensus        17 ~~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~~~-~--~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~   90 (96)
T d2cr5a1          17 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGY-H--KSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE   90 (96)
T ss_dssp             EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTC-C--TTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcccHHHHHHHHHHhcc-C--cccceeecCCCceecCccCCCcHHHCCCCCCCEEEEec
Confidence            44555556677777777899999999999977654 2  45566663  33555  347899999999998888743

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=1.8  Score=36.26  Aligned_cols=72  Identities=15%  Similarity=0.241  Sum_probs=55.1

Q ss_pred             CCEEEEE-EeCCeEEEEEecCCCCHHHHHHHHHHhhCCCccceEEE--EcCcccc--cCCccccccCcccccceeEEe
Q 007773           32 DSILIFL-SVGGSVIPMRVMESDSIASVKLRIQSYNGFFVKKQKLV--FEGRELA--RSNSRVRDYGLADGNVLHLVL  104 (590)
Q Consensus        32 ~sM~I~V-tl~G~t~~l~V~~sdTV~~LK~kIq~~~Gip~~~QrLv--f~Gk~L~--~D~~tL~dygI~~gstL~Lvl  104 (590)
                      ...+|.| ..+|+.+..++..++||.+|...|+... .....-.|+  |--+.|.  +.+.+|++.|+....+|++--
T Consensus        42 p~~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~~-~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee  118 (124)
T d1wj4a_          42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSKG-YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE  118 (124)
T ss_dssp             CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHH-CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcc-cCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEe
Confidence            3578888 4588999999999999999999998764 444555565  4456663  356899999999988887643

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.53  E-value=1.5  Score=36.75  Aligned_cols=68  Identities=10%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             ccceeeeccceeeEEEeecCCcHHHHHHHHHHhcCCCCCCCcEEEE--ECCEEc---CCCCcccccCCCCCCEEEE
Q 007773          110 QAITVTTVCGKVFEFHVERGRNVGYVKQQIAKKGREFVDLKNQELI--CDGEEL---EDQRLITDICKRNEAVIHL  180 (590)
Q Consensus       110 m~I~Vkt~~Gk~~~i~Vd~s~TV~~LK~kI~~~~gi~~~~~~Q~Li--f~Gk~L---eD~~tL~dy~I~~gsvI~L  180 (590)
                      -+|.||..+|+.+.-....++||.+|.+-|..... .  .....|+  |--+.|   +...+|.+.++.+.++|++
T Consensus        44 ~~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~~~-~--~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~v  116 (124)
T d1wj4a_          44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGY-P--NERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV  116 (124)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHC-C--TTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred             eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhccc-C--CcceEEeecccccccccccccCcHHHcCCCCCCEEEE
Confidence            35666667788888888899999999999977643 3  4566666  455666   3478999999998888875