Citrus Sinensis ID: 007782

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR
cHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHccccccEEEEEccccccHHHHHHccccccccEEEEEcccccccccccccccccccHHHHHHHHHcccccccccccEEEEcccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHcccccEEEcccccHHHHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHccEEEEccccccccccccccccccccccccccccccHHHHHHHHcccEEEEcccccccccHHHHHHHHHcccccEEEEcccccccccccHHHHHHHccccEEEEcccccccEEEccEEEcccccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccc
cccHHHHHcccccccccccccccccccccccccccccccccccccEEEccccHHHHccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHcHcccHHHHHHHHHHcHHHHHHHHcccHHHHHHHcHHHHccccccEEEEHHHcccHHHHHcccccccccEEEEEccccEcccEccHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEcccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHcHEEEEccccEEcEcccccccHHHccccEcccccccHHHHHHHHcccEEEEcccccccccHHHHHHHHHHccccEEEEccccHHHccccHHHHHHccccccEEEEccccccEEEccEEEccEEccHHHcHHHHHHHHHHHcEccccHHHHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccEccccccccHHHHHHHHcccccccccc
mestmkemrdgasvldfdskstveggvedvygedratedqlvtpwtisvasgycllrdprhnkglaftekeRDAHylrgllppaviSQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEEllpvvytptvgeACQKYgsifrrpqglyisLKEKGKILEVLKNWPERSIQVIVVTdgerilglgdlgcqgmgipvGKLALYTAlggirpsaclpitvdvgtnneqllkDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGtthlvfnddiqgTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISkqtkapveETRKKIclvdskglivsSRKDSlqhfkkpwahehepvnnlldavkvikptiligssgvgrtFTKEVIEAMASFnekplilalsnptsqsectaeeayTWSKgraifasgspfdpfeyngkvfvpgqannayifpgFGLGLVISGAIRVHDDMLLAASEALAKQVTEenfekgliyppfsniRKISANIAANVAAKAYELGvatrlprpqnlvkcaescmytpvyrnyr
mestmkemrdgasvldfdskstveggvedvygedratedqlvtpwTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVlknwpersiQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEIskqtkapveetrkkiclvdskglivSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPtiligssgvgrTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGvatrlprpqnlvkcaescmytpvyrnyr
MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQgtasvvlagvvaalkliggTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRkisaniaanvaakaYELGVATRLPRPQNLVKCAESCMYTPVYRNYR
****************************DVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS*******CTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYR***
************************************TEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY*
***********ASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS************AYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR
********************************EDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR
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MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query590 2.2.26 [Sep-21-2011]
P51615591 NADP-dependent malic enzy yes no 1.0 0.998 0.876 0.0
P34105591 NADP-dependent malic enzy yes no 1.0 0.998 0.871 0.0
P36444647 NADP-dependent malic enzy N/A no 0.977 0.891 0.824 0.0
P12628589 NADP-dependent malic enzy N/A no 0.959 0.960 0.844 0.0
P43279639 NADP-dependent malic enzy no no 0.950 0.877 0.823 0.0
Q9CA83646 NADP-dependent malic enzy yes no 0.979 0.894 0.803 0.0
Q9XGZ0588 NADP-dependent malic enzy no no 0.969 0.972 0.806 0.0
O82191581 NADP-dependent malic enzy no no 0.977 0.993 0.825 0.0
P22178648 NADP-dependent malic enzy N/A no 0.966 0.879 0.802 0.0
P37223585 NADP-dependent malic enzy N/A no 0.983 0.991 0.779 0.0
>sp|P51615|MAOX_VITVI NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1 Back     alignment and function desciption
 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/591 (87%), Positives = 564/591 (95%), Gaps = 1/591 (0%)

Query: 1   MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
           MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVASGY LLRDPR
Sbjct: 1   MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60

Query: 61  HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNE 119
           HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L ERNE
Sbjct: 61  HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120

Query: 120 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 179
           RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180

Query: 180 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 239
            IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240

Query: 240 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 299
            +EFYIGL+QRRATG+EY+E L EFMS VKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSPVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300

Query: 300 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 359
           L FNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK 
Sbjct: 301 LAFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360

Query: 360 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 419
           P+EETRKKI LVDSKGLIV SRKDSLQ FKKPWAHEHEPV +LLDAVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKDSLQQFKKPWAHEHEPVKDLLDAVKVIKPTVLIGSSG 420

Query: 420 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 479
           VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480

Query: 480 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 539
           NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540

Query: 540 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 590
           FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591

Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0
>sp|P34105|MAOX_POPTR NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3 Back     alignment and function description
>sp|P36444|MAOC_FLAPR NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1 Back     alignment and function description
>sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1 Back     alignment and function description
>sp|P43279|MAOC_ORYSJ NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2 Back     alignment and function description
>sp|Q9CA83|MAOP4_ARATH NADP-dependent malic enzyme 4, chloroplastic OS=Arabidopsis thaliana GN=NADP-ME4 PE=1 SV=1 Back     alignment and function description
>sp|Q9XGZ0|MAOP3_ARATH NADP-dependent malic enzyme 3 OS=Arabidopsis thaliana GN=NADP-ME3 PE=1 SV=1 Back     alignment and function description
>sp|O82191|MAOP1_ARATH NADP-dependent malic enzyme 1 OS=Arabidopsis thaliana GN=NADP-ME1 PE=1 SV=1 Back     alignment and function description
>sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1 Back     alignment and function description
>sp|P37223|MAOX_MESCR NADP-dependent malic enzyme OS=Mesembryanthemum crystallinum GN=MOD1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
255546341591 malic enzyme, putative [Ricinus communis 1.0 0.998 0.903 0.0
356513167633 PREDICTED: NADP-dependent malic enzyme-l 1.0 0.932 0.898 0.0
225445108591 PREDICTED: NADP-dependent malic enzyme [ 1.0 0.998 0.879 0.0
1708924591 RecName: Full=NADP-dependent malic enzym 1.0 0.998 0.876 0.0
356558908591 PREDICTED: NADP-dependent malic enzyme-l 1.0 0.998 0.881 0.0
356495891591 PREDICTED: NADP-dependent malic enzyme-l 1.0 0.998 0.874 0.0
449435772591 PREDICTED: NADP-dependent malic enzyme-l 1.0 0.998 0.883 0.0
225442481640 PREDICTED: NADP-dependent malic enzyme [ 1.0 0.921 0.857 0.0
1561774640 malate dehydrogenase [Vitis vinifera] 1.0 0.921 0.856 0.0
224142207591 predicted protein [Populus trichocarpa] 1.0 0.998 0.874 0.0
>gi|255546341|ref|XP_002514230.1| malic enzyme, putative [Ricinus communis] gi|223546686|gb|EEF48184.1| malic enzyme, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/591 (90%), Positives = 567/591 (95%), Gaps = 1/591 (0%)

Query: 1   MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
           MESTMKEMR GASVLD D KSTV GGVEDVYGED ATEDQLVTPWT SVASGY LLRDPR
Sbjct: 1   MESTMKEMRGGASVLDMDPKSTVGGGVEDVYGEDCATEDQLVTPWTTSVASGYSLLRDPR 60

Query: 61  HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELE-RNE 119
           HNKGLAF+EKERDAHYLRGLLPP V +QQLQEKKLM++IRQY++PLQKY+AMMELE RNE
Sbjct: 61  HNKGLAFSEKERDAHYLRGLLPPVVATQQLQEKKLMHTIRQYQLPLQKYMAMMELEERNE 120

Query: 120 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 179
           RLFYKLLIDNVEELLP+VYTPTVGEACQKYGSIF+RPQGLYISLKEKGKIL+VLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKILDVLKNWPER 180

Query: 180 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLL 239
           SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSACLPIT+DVGTNNE+LL
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240

Query: 240 KDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 299
            DEFYIGLRQRRATGQEY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQRRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 300

Query: 300 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 359
           LVFNDDIQGTASVVLAGV+AALKL+GG+L++H FLFLGAGEAGTGIAELIALE+SK+T A
Sbjct: 301 LVFNDDIQGTASVVLAGVIAALKLLGGSLSDHTFLFLGAGEAGTGIAELIALEMSKRTNA 360

Query: 360 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 419
           P+EETRKKI LVDSKGLIVSSRKDSLQHFK+PWAHEHEPV NLLDAVK IKPT+LIGSSG
Sbjct: 361 PLEETRKKIWLVDSKGLIVSSRKDSLQHFKQPWAHEHEPVKNLLDAVKAIKPTVLIGSSG 420

Query: 420 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 479
           VGRTFTKEVIEAMAS NEKPLIL+LSNPTSQSECTAEEAYTW+KG+A FASGSPFDP EY
Sbjct: 421 VGRTFTKEVIEAMASLNEKPLILSLSNPTSQSECTAEEAYTWTKGKATFASGSPFDPVEY 480

Query: 480 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 539
            GKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA QVTEENF KGLIYPP
Sbjct: 481 EGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALASQVTEENFSKGLIYPP 540

Query: 540 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 590
           FSNIRKISA+IAANVAAKAYELG+ATRLPRP+NL+K AESCMY+PVYRNYR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPRPENLMKYAESCMYSPVYRNYR 591

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356513167|ref|XP_003525285.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|225445108|ref|XP_002283751.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297738764|emb|CBI28009.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1708924|sp|P51615.1|MAOX_VITVI RecName: Full=NADP-dependent malic enzyme; Short=NADP-ME gi|515759|gb|AAA67087.1| malate dehydrogenase (NADP+) [Vitis vinifera] Back     alignment and taxonomy information
>gi|356558908|ref|XP_003547744.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|356495891|ref|XP_003516804.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] Back     alignment and taxonomy information
>gi|449435772|ref|XP_004135668.1| PREDICTED: NADP-dependent malic enzyme-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225442481|ref|XP_002283814.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297743201|emb|CBI36068.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|1561774|gb|AAB08874.1| malate dehydrogenase [Vitis vinifera] Back     alignment and taxonomy information
>gi|224142207|ref|XP_002324450.1| predicted protein [Populus trichocarpa] gi|222865884|gb|EEF03015.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query590
TAIR|locus:2052045581 NADP-ME1 "NADP-malic enzyme 1" 0.977 0.993 0.782 7.8e-245
TAIR|locus:2017854646 NADP-ME4 "NADP-malic enzyme 4" 0.979 0.894 0.758 3e-243
TAIR|locus:2180547588 NADP-ME3 "NADP-malic enzyme 3" 0.969 0.972 0.764 1.1e-240
TAIR|locus:2181980588 NADP-ME2 "NADP-malic enzyme 2" 0.971 0.974 0.763 1.5e-239
UNIPROTKB|F1P0Y6576 ME1 "Malic enzyme" [Gallus gal 0.922 0.944 0.496 8.6e-143
RGD|3074572 Me1 "malic enzyme 1, NADP(+)-d 0.903 0.931 0.502 3.9e-140
UNIPROTKB|P13697572 Me1 "NADP-dependent malic enzy 0.903 0.931 0.502 3.9e-140
MGI|MGI:97043572 Me1 "malic enzyme 1, NADP(+)-d 0.903 0.931 0.502 6.3e-140
ZFIN|ZDB-GENE-040801-147581 me2 "malic enzyme 2, NAD(+)-de 0.920 0.934 0.480 4.4e-139
UNIPROTKB|P48163572 ME1 "NADP-dependent malic enzy 0.903 0.931 0.499 9.2e-139
TAIR|locus:2052045 NADP-ME1 "NADP-malic enzyme 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2359 (835.5 bits), Expect = 7.8e-245, P = 7.8e-245
 Identities = 452/578 (78%), Positives = 505/578 (87%)

Query:    14 VLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERD 73
             V + D KS+V+GGV DVYGED AT +  +TPW++SV+SGY LLRDPR+NKGLAFTEKERD
Sbjct:     4 VTNSDLKSSVDGGVVDVYGEDSATIEHNITPWSLSVSSGYSLLRDPRYNKGLAFTEKERD 63

Query:    74 AHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLLIDNVEE 132
              HYLRGLLPP V+ Q+LQEK+L+N+IRQY+ PLQKY+A+ EL ERNERLFYKLLIDNVEE
Sbjct:    64 THYLRGLLPPVVLDQKLQEKRLLNNIRQYQFPLQKYMALTELQERNERLFYKLLIDNVEE 123

Query:   133 LLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 192
             LLP+VYTPTVGEACQK+GSIFRRPQGL+ISLK+KGKIL+VLKNWPER+IQVIVVTDGERI
Sbjct:   124 LLPIVYTPTVGEACQKFGSIFRRPQGLFISLKDKGKILDVLKNWPERNIQVIVVTDGERI 183

Query:   193 LGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRA 252
             LGLGDLGCQGMGIPVGKLALY+ALGG+RPSACLP+T+DVGTNNE+LL DEFYIGLRQ+RA
Sbjct:   184 LGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQKRA 243

Query:   253 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXX 312
             TGQEY+ELL+EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY  THLVFNDDIQ     
Sbjct:   244 TGQEYSELLNEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYSDTHLVFNDDIQGTASV 303

Query:   313 XXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 372
                            LAEH FLFLGAGEAGTGIAELIAL +SKQ  A VEE+RKKI LVD
Sbjct:   304 VLAGLVSAQKLTNSPLAEHTFLFLGAGEAGTGIAELIALYMSKQMNASVEESRKKIWLVD 363

Query:   373 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM 432
             SKGLIV+SRKDSLQ FKKPWAHEHEPV +LL A+K IKPT+LIGSSGVGR+FTKEVIEAM
Sbjct:   364 SKGLIVNSRKDSLQDFKKPWAHEHEPVKDLLGAIKAIKPTVLIGSSGVGRSFTKEVIEAM 423

Query:   433 ASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNA 492
             +S NE+PLI+ALSNPT+QSECTAEEAYTWSKGRAIFASGSPFDP EY GKVFV  QANNA
Sbjct:   424 SSINERPLIMALSNPTTQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVSTQANNA 483

Query:   493 YIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXX 552
             YIFPGFGLGLVISGAIRVHDDMLLAA+EALA QV++EN+EKG+IYP FS+IR        
Sbjct:   484 YIFPGFGLGLVISGAIRVHDDMLLAAAEALAGQVSKENYEKGMIYPSFSSIRKISAQIAA 543

Query:   553 XXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 590
                   YELG+A RLPRP+++VKCAES MY+P YR YR
Sbjct:   544 NVATKAYELGLAGRLPRPKDIVKCAESSMYSPTYRLYR 581
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004470 "malic enzyme activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006108 "malate metabolic process" evidence=IEA;ISS;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0016619 "malate dehydrogenase (oxaloacetate-decarboxylating) activity" evidence=IEA
GO:0016652 "oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor" evidence=ISS
GO:0046872 "metal ion binding" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0004473 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity" evidence=IDA
GO:0005829 "cytosol" evidence=NAS
GO:0051260 "protein homooligomerization" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2017854 NADP-ME4 "NADP-malic enzyme 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180547 NADP-ME3 "NADP-malic enzyme 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181980 NADP-ME2 "NADP-malic enzyme 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-147 me2 "malic enzyme 2, NAD(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P48163 ME1 "NADP-dependent malic enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4SKE9MAO1_AERS41, ., 1, ., 1, ., 3, 80.43280.93220.9751yesno
O82191MAOP1_ARATH1, ., 1, ., 1, ., 4, 00.82520.97790.9931nono
Q8ZPE8MAO1_SALTY1, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
P06801MAOX_MOUSE1, ., 1, ., 1, ., 4, 00.52880.90330.9318yesno
B5QTN6MAO1_SALEP1, ., 1, ., 1, ., 3, 80.42770.90160.9415yesno
P28227MAOX_ANAPL1, ., 1, ., 1, ., 4, 00.52400.90840.9622N/Ano
P13697MAOX_RAT1, ., 1, ., 1, ., 4, 00.52880.90330.9318yesno
Q29558MAOX_PIG1, ., 1, ., 1, ., 4, 00.52140.90330.9569yesno
B5RAB4MAO1_SALG21, ., 1, ., 1, ., 3, 80.42770.90160.9415yesno
P34105MAOX_POPTR1, ., 1, ., 1, ., 4, 00.87141.00.9983yesno
Q9XGZ0MAOP3_ARATH1, ., 1, ., 1, ., 4, 00.80620.96940.9727nono
B5FHJ6MAO1_SALDC1, ., 1, ., 1, ., 3, 80.42770.90160.9415yesno
A9MYU8MAO1_SALPB1, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
Q9LYG3MAOP2_ARATH1, ., 1, ., 1, ., 4, 00.80480.97110.9744nono
P22178MAOC_FLATR1, ., 1, ., 1, ., 4, 00.80240.96610.8796N/Ano
P43279MAOC_ORYSJ1, ., 1, ., 1, ., 4, 00.82360.95080.8779nono
A7MN74MAO1_CROS81, ., 1, ., 1, ., 3, 80.43140.90330.9416yesno
B4TW15MAO1_SALSV1, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
Q4FRX3MAO1_PSYA21, ., 1, ., 1, ., 3, 80.44540.90670.9553yesno
B5FEY5MAO1_VIBFM1, ., 1, ., 1, ., 3, 80.43270.90840.9537yesno
Q57P88MAO1_SALCH1, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
Q1QC40MAO1_PSYCK1, ., 1, ., 1, ., 3, 80.44180.90670.9553yesno
A0KHR8MAO1_AERHH1, ., 1, ., 1, ., 3, 80.43200.93050.9734yesno
P37222MAOC_SOLLC1, ., 1, ., 1, ., 4, 00.80760.96440.9930N/Ano
P37223MAOX_MESCR1, ., 1, ., 1, ., 4, 00.77920.98300.9914N/Ano
P51615MAOX_VITVI1, ., 1, ., 1, ., 4, 00.87641.00.9983yesno
P40927MAOX_COLLI1, ., 1, ., 1, ., 4, 00.51850.90840.9622N/Ano
A8AGN6MAO1_CITK81, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
Q6TU48MAOX_DICDI1, ., 1, ., 1, ., 4, 00.48030.89660.9724yesno
Q9CA83MAOP4_ARATH1, ., 1, ., 1, ., 4, 00.80310.97960.8947yesno
B4T5V6MAO1_SALNS1, ., 1, ., 1, ., 3, 80.42770.90160.9415yesno
P48163MAOX_HUMAN1, ., 1, ., 1, ., 4, 00.52510.90330.9318yesno
P12628MAOX_PHAVU1, ., 1, ., 1, ., 4, 00.84470.95930.9609N/Ano
P16243MAOC_MAIZE1, ., 1, ., 1, ., 4, 00.80540.93050.8632N/Ano
B4TII8MAO1_SALHS1, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
Q6FFL8MAO1_ACIAD1, ., 1, ., 1, ., 3, 80.43270.90840.9469yesno
Q5PHY7MAO1_SALPA1, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
B5F5W5MAO1_SALA41, ., 1, ., 1, ., 3, 80.42960.90160.9415yesno
Q5E4J3MAO1_VIBF11, ., 1, ., 1, ., 3, 80.43270.90840.9537yesno
P36444MAOC_FLAPR1, ., 1, ., 1, ., 4, 00.82440.97790.8918N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
4th Layer1.1.1.400.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
PLN03129581 PLN03129, PLN03129, NADP-dependent malic enzyme; P 0.0
PRK13529563 PRK13529, PRK13529, malate dehydrogenase; Provisio 0.0
PTZ00317559 PTZ00317, PTZ00317, NADP-dependent malic enzyme; P 0.0
cd05312279 cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma 1e-148
pfam03949255 pfam03949, Malic_M, Malic enzyme, NAD binding doma 1e-123
COG0281432 COG0281, SfcA, Malic enzyme [Energy production and 1e-119
pfam00390182 pfam00390, malic, Malic enzyme, N-terminal domain 1e-105
smart00919231 smart00919, Malic_M, Malic enzyme, NAD binding dom 7e-93
cd00762254 cd00762, NAD_bind_malic_enz, NAD(P) binding domain 8e-89
cd05311226 cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma 5e-31
PRK12862 763 PRK12862, PRK12862, malic enzyme; Reviewed 8e-19
PRK07232 752 PRK07232, PRK07232, bifunctional malic enzyme oxid 6e-18
PRK12861 764 PRK12861, PRK12861, malic enzyme; Reviewed 2e-16
cd0519186 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do 3e-08
>gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional Back     alignment and domain information 
 Score = 1131 bits (2928), Expect = 0.0
 Identities = 430/582 (73%), Positives = 492/582 (84%), Gaps = 2/582 (0%)

Query: 10  DGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTE 69
             +S+ D   + +  GGVEDVYGED ATE+Q VTPW   VASGY LLRDPR+NKGLAFTE
Sbjct: 1   ASSSLADARRRRSAAGGVEDVYGEDAATEEQPVTPWV-RVASGYDLLRDPRYNKGLAFTE 59

Query: 70  KERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLLID 128
            ERD   LRGLLPPAV+SQ+LQ K+ M ++R  E PL KY A+M+L ERNERLFY++LID
Sbjct: 60  TERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLID 119

Query: 129 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTD 188
           N+EELLP+VYTPTVGEACQKYGS+FRRP+GLYISLK+KG++L +LKNWPER +QVIVVTD
Sbjct: 120 NIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTD 179

Query: 189 GERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLR 248
           GERILGLGDLG QGMGIPVGKL LYTA GGIRPSA LP+ +DVGTNNE+LL D FYIGLR
Sbjct: 180 GERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLR 239

Query: 249 QRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQG 308
           Q R TG+EY EL+DEFM AVKQ +G KVL+QFEDFAN NAF LL +Y TTHL FNDDIQG
Sbjct: 240 QPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQG 299

Query: 309 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 368
           TA+V LAG++AAL+  GG LA+ R LF GAGEAGTGIAELIAL +S+QT    EE RK+I
Sbjct: 300 TAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRI 359

Query: 369 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 428
            LVDSKGL+  SRKDSLQ FKKP+AH+HEP  +LL+AVK IKPT+LIG SGVG TFTKEV
Sbjct: 360 WLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419

Query: 429 IEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQ 488
           +EAMAS NE+P+I ALSNPTS++ECTAEEAYTW+ GRAIFASGSPFDP EYNGK F PGQ
Sbjct: 420 LEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQ 479

Query: 489 ANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISA 548
           ANNAYIFPG GLG ++SGAIRV DDMLLAA+EALA QVTEE   KG IYPPFS IR ISA
Sbjct: 480 ANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISA 539

Query: 549 NIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 590
           ++AA VAAKAYE G+ATRLPRP++LV+ AESCMY+PVYR YR
Sbjct: 540 HVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581

Length = 581
>gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 Back     alignment and domain information
>gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain Back     alignment and domain information
>gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain Back     alignment and domain information
>gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain Back     alignment and domain information
>gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme Back     alignment and domain information
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 Back     alignment and domain information
>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed Back     alignment and domain information
>gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed Back     alignment and domain information
>gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed Back     alignment and domain information
>gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 590
KOG1257582 consensus NADP+-dependent malic enzyme [Energy pro 100.0
PLN03129581 NADP-dependent malic enzyme; Provisional 100.0
PRK13529563 malate dehydrogenase; Provisional 100.0
PTZ00317559 NADP-dependent malic enzyme; Provisional 100.0
COG0281432 SfcA Malic enzyme [Energy production and conversio 100.0
PRK12861 764 malic enzyme; Reviewed 100.0
PRK12862 763 malic enzyme; Reviewed 100.0
PRK07232 752 bifunctional malic enzyme oxidoreductase/phosphotr 100.0
cd05312279 NAD_bind_1_malic_enz NAD(P) binding domain of mali 100.0
PF03949255 Malic_M: Malic enzyme, NAD binding domain; InterPr 100.0
cd00762254 NAD_bind_malic_enz NAD(P) binding domain of malic 100.0
PF00390182 malic: Malic enzyme, N-terminal domain; InterPro: 100.0
cd05311226 NAD_bind_2_malic_enz NAD(P) binding domain of mali 100.0
cd0519186 NAD_bind_amino_acid_DH NAD(P) binding domain of am 98.87
PRK05476425 S-adenosyl-L-homocysteine hydrolase; Provisional 97.72
TIGR01035417 hemA glutamyl-tRNA reductase. This enzyme, togethe 97.26
PRK09414445 glutamate dehydrogenase; Provisional 97.1
PLN02477410 glutamate dehydrogenase 97.07
cd05213311 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain 97.07
cd05211217 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of 97.04
cd00401413 AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado 97.01
PRK00045423 hemA glutamyl-tRNA reductase; Reviewed 96.97
TIGR00936406 ahcY adenosylhomocysteinase. This enzyme hydrolyze 96.9
PRK14031444 glutamate dehydrogenase; Provisional 96.78
PTZ00075476 Adenosylhomocysteinase; Provisional 96.76
cd01080168 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of 96.76
PLN02494477 adenosylhomocysteinase 96.73
PF01488135 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; 96.62
TIGR02853287 spore_dpaA dipicolinic acid synthetase, A subunit. 96.61
PRK14030445 glutamate dehydrogenase; Provisional 96.54
COG0373414 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] 96.43
PRK08306296 dipicolinate synthase subunit A; Reviewed 96.18
PLN00203519 glutamyl-tRNA reductase 96.16
PRK14982340 acyl-ACP reductase; Provisional 96.12
cd01075200 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l 96.12
PTZ00079454 NADP-specific glutamate dehydrogenase; Provisional 96.11
cd01076227 NAD_bind_1_Glu_DH NAD(P) binding domain of glutama 96.1
PRK14192283 bifunctional 5,10-methylene-tetrahydrofolate dehyd 95.95
PLN00106323 malate dehydrogenase 95.83
PRK13940414 glutamyl-tRNA reductase; Provisional 95.79
cd05313254 NAD_bind_2_Glu_DH NAD(P) binding domain of glutama 95.79
PRK08293287 3-hydroxybutyryl-CoA dehydrogenase; Validated 95.73
PRK14175286 bifunctional 5,10-methylene-tetrahydrofolate dehyd 95.61
PRK12549284 shikimate 5-dehydrogenase; Reviewed 95.59
cd01078194 NAD_bind_H4MPT_DH NADP binding domain of methylene 95.43
cd01065155 NAD_bind_Shikimate_DH NAD(P) binding domain of Shi 95.43
TIGR00518370 alaDH alanine dehydrogenase. The family of known L 94.8
PRK00676338 hemA glutamyl-tRNA reductase; Validated 94.63
TIGR01809282 Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO 94.54
PF00208244 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val 94.28
PF00670162 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase 94.26
cd05197 425 GH4_glycoside_hydrolases Glycoside Hydrases Family 94.22
PF0380796 F420_oxidored: NADP oxidoreductase coenzyme F420-d 94.16
PRK10792285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 94.12
PRK05086312 malate dehydrogenase; Provisional 93.93
PF00056141 Ldh_1_N: lactate/malate dehydrogenase, NAD binding 93.82
PRK09424509 pntA NAD(P) transhydrogenase subunit alpha; Provis 93.47
cd00650263 LDH_MDH_like NAD-dependent, lactate dehydrogenase- 93.38
cd05296 419 GH4_P_beta_glucosidase Glycoside Hydrolases Family 93.26
TIGR02356202 adenyl_thiF thiazole biosynthesis adenylyltransfer 93.22
PRK14191285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 93.07
PRK09260288 3-hydroxybutyryl-CoA dehydrogenase; Validated 92.99
PRK06130311 3-hydroxybutyryl-CoA dehydrogenase; Validated 92.98
cd05291306 HicDH_like L-2-hydroxyisocapronate dehydrogenases 92.92
PRK08605332 D-lactate dehydrogenase; Validated 92.87
PRK06129308 3-hydroxyacyl-CoA dehydrogenase; Validated 92.8
PRK08328231 hypothetical protein; Provisional 92.72
PTZ00325321 malate dehydrogenase; Provisional 92.62
TIGR02354200 thiF_fam2 thiamine biosynthesis protein ThiF, fami 92.58
PRK12749288 quinate/shikimate dehydrogenase; Reviewed 92.48
cd05212140 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom 92.43
PLN02928347 oxidoreductase family protein 92.28
PRK07531 495 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe 92.21
PRK00066315 ldh L-lactate dehydrogenase; Reviewed 92.09
cd01079197 NAD_bind_m-THF_DH NAD binding domain of methylene- 92.09
PRK14027283 quinate/shikimate dehydrogenase; Provisional 91.78
PRK08223287 hypothetical protein; Validated 91.63
PRK00257381 erythronate-4-phosphate dehydrogenase; Validated 91.57
COG0578 532 GlpA Glycerol-3-phosphate dehydrogenase [Energy pr 91.37
cd05298 437 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; 91.33
PTZ00117319 malate dehydrogenase; Provisional 91.12
PRK15076 431 alpha-galactosidase; Provisional 91.08
PRK12548289 shikimate 5-dehydrogenase; Provisional 91.0
PRK08762376 molybdopterin biosynthesis protein MoeB; Validated 90.99
PTZ00082321 L-lactate dehydrogenase; Provisional 90.81
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 90.68
PRK14189285 bifunctional 5,10-methylene-tetrahydrofolate dehyd 90.63
PRK14619308 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 90.53
PRK00258278 aroE shikimate 5-dehydrogenase; Reviewed 90.51
PRK14194301 bifunctional 5,10-methylene-tetrahydrofolate dehyd 90.46
PRK15438378 erythronate-4-phosphate dehydrogenase PdxB; Provis 90.38
PRK05600370 thiamine biosynthesis protein ThiF; Validated 90.21
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 90.15
cd05297 423 GH4_alpha_glucosidase_galactosidase Glycoside Hydr 90.15
cd00704323 MDH Malate dehydrogenase. Malate dehydrogenase (MD 90.0
PRK14176287 bifunctional 5,10-methylene-tetrahydrofolate dehyd 89.97
PRK14178279 bifunctional 5,10-methylene-tetrahydrofolate dehyd 89.94
PF02826178 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy 89.91
PRK06035291 3-hydroxyacyl-CoA dehydrogenase; Validated 89.8
COG0169283 AroE Shikimate 5-dehydrogenase [Amino acid transpo 89.77
TIGR00561511 pntA NAD(P) transhydrogenase, alpha subunit. In so 89.52
TIGR02992326 ectoine_eutC ectoine utilization protein EutC. Mem 89.37
PRK06223307 malate dehydrogenase; Reviewed 89.23
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 88.86
PF01210157 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate 88.72
COG0334411 GdhA Glutamate dehydrogenase/leucine dehydrogenase 88.57
COG0111324 SerA Phosphoglycerate dehydrogenase and related de 88.33
PF02056183 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP 88.18
cd01336325 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli 88.05
PRK14851 679 hypothetical protein; Provisional 87.93
PRK14184286 bifunctional 5,10-methylene-tetrahydrofolate dehyd 87.76
PF01113124 DapB_N: Dihydrodipicolinate reductase, N-terminus; 87.65
PRK14190284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 87.61
TIGR01915219 npdG NADPH-dependent F420 reductase. This model re 87.49
TIGR01763305 MalateDH_bact malate dehydrogenase, NAD-dependent. 87.27
cd01337310 MDH_glyoxysomal_mitochondrial Glyoxysomal and mito 87.23
PRK08374336 homoserine dehydrogenase; Provisional 87.11
PRK14183281 bifunctional 5,10-methylene-tetrahydrofolate dehyd 86.89
PRK04346397 tryptophan synthase subunit beta; Validated 86.88
PRK07574385 formate dehydrogenase; Provisional 86.64
TIGR00872298 gnd_rel 6-phosphogluconate dehydrogenase (decarbox 86.62
PRK12550272 shikimate 5-dehydrogenase; Reviewed 86.59
PRK08644212 thiamine biosynthesis protein ThiF; Provisional 86.44
COG1486 442 CelF Alpha-galactosidases/6-phospho-beta-glucosida 86.18
TIGR01772312 MDH_euk_gproteo malate dehydrogenase, NAD-dependen 86.17
PLN02306386 hydroxypyruvate reductase 86.05
PRK14179284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 85.95
PF01262168 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal 85.73
PRK11880267 pyrroline-5-carboxylate reductase; Reviewed 85.69
PRK14177284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 85.56
cd01338322 MDH_choloroplast_like Chloroplast-like malate dehy 85.48
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 85.41
PRK14174295 bifunctional 5,10-methylene-tetrahydrofolate dehyd 85.3
PRK06436303 glycerate dehydrogenase; Provisional 85.11
PRK13243333 glyoxylate reductase; Reviewed 85.06
PRK14618328 NAD(P)H-dependent glycerol-3-phosphate dehydrogena 84.96
TIGR02355240 moeB molybdopterin synthase sulfurylase MoeB. This 84.63
PRK14188296 bifunctional 5,10-methylene-tetrahydrofolate dehyd 84.45
PRK14172278 bifunctional 5,10-methylene-tetrahydrofolate dehyd 84.39
PF02882160 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl 84.28
PRK00094325 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr 83.98
cd05290307 LDH_3 A subgroup of L-lactate dehydrogenases. L-la 83.75
PRK07634245 pyrroline-5-carboxylate reductase; Reviewed 83.64
TIGR01759323 MalateDH-SF1 malate dehydrogenase. This model repr 83.51
PRK15116268 sulfur acceptor protein CsdL; Provisional 83.51
cd01485198 E1-1_like Ubiquitin activating enzyme (E1), repeat 83.42
PRK08410311 2-hydroxyacid dehydrogenase; Provisional 83.41
cd01339300 LDH-like_MDH L-lactate dehydrogenase-like malate d 83.36
PRK14193284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 83.27
PLN02516299 methylenetetrahydrofolate dehydrogenase (NADP+) 83.26
TIGR01285432 nifN nitrogenase molybdenum-iron cofactor biosynth 83.22
PRK14171288 bifunctional 5,10-methylene-tetrahydrofolate dehyd 83.18
PRK14106 450 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 83.02
PRK08291330 ectoine utilization protein EutC; Validated 83.0
PRK14187294 bifunctional 5,10-methylene-tetrahydrofolate dehyd 82.89
PRK15469312 ghrA bifunctional glyoxylate/hydroxypyruvate reduc 82.78
TIGR01758324 MDH_euk_cyt malate dehydrogenase, NAD-dependent. T 82.78
PRK14166282 bifunctional 5,10-methylene-tetrahydrofolate dehyd 82.63
PRK05690245 molybdopterin biosynthesis protein MoeB; Provision 82.39
PRK12921305 2-dehydropantoate 2-reductase; Provisional 82.35
PRK14170284 bifunctional 5,10-methylene-tetrahydrofolate dehyd 82.26
PRK14168297 bifunctional 5,10-methylene-tetrahydrofolate dehyd 82.05
PRK01710 458 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn 82.01
COG0686371 Ald Alanine dehydrogenase [Amino acid transport an 81.97
cd01487174 E1_ThiF_like E1_ThiF_like. Member of superfamily o 81.71
cd01492197 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit 81.59
PRK07066321 3-hydroxybutyryl-CoA dehydrogenase; Validated 81.49
TIGR00507270 aroE shikimate 5-dehydrogenase. This model finds p 81.48
cd01483143 E1_enzyme_family Superfamily of activating enzymes 81.45
PRK05808282 3-hydroxybutyryl-CoA dehydrogenase; Validated 81.45
PRK07530292 3-hydroxybutyryl-CoA dehydrogenase; Validated 81.31
PRK05442326 malate dehydrogenase; Provisional 81.26
cd05293312 LDH_1 A subgroup of L-lactate dehydrogenases. L-la 80.97
PRK06522304 2-dehydropantoate 2-reductase; Reviewed 80.85
cd00755231 YgdL_like Family of activating enzymes (E1) of ubi 80.4
PTZ00345365 glycerol-3-phosphate dehydrogenase; Provisional 80.4
PRK09310477 aroDE bifunctional 3-dehydroquinate dehydratase/sh 80.25
PRK12480330 D-lactate dehydrogenase; Provisional 80.16
TIGR01408 1008 Ube1 ubiquitin-activating enzyme E1. This model re 80.05
PRK06487317 glycerate dehydrogenase; Provisional 80.02
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-223  Score=1760.49  Aligned_cols=559  Identities=65%  Similarity=1.046  Sum_probs=545.9

Q ss_pred             cccCcccccccccccc-ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhH
Q 007782           30 VYGEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQK  108 (590)
Q Consensus        30 ~~~~~~~~~~~~~~~~-~~~~~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~K  108 (590)
                      .+++...+..+...+| +.++++|+++|+||++|||+|||.+||++|||||||||+|+|+|+|++||+.+|+++++||+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~k   87 (582)
T KOG1257|consen    8 VYSTAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAK   87 (582)
T ss_pred             cccCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHH
Confidence            3344444434444555 667889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhh-cccccchhhhcccCccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEe
Q 007782          109 YVAMMEL-ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVT  187 (590)
Q Consensus       109 y~~L~~L-~~Ne~LFy~ll~~~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVT  187 (590)
                      |+||++| +|||+|||++|++|+||+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||
T Consensus        88 y~~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVT  167 (582)
T KOG1257|consen   88 YIYLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVT  167 (582)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEe
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCceeecCCCCCCCcccchhhhHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHH
Q 007782          188 DGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSA  267 (590)
Q Consensus       188 DG~rILGLGDlG~~GmgI~iGKl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~a  267 (590)
                      ||||||||||||++|||||+|||+||||||||+|++|||||||||||||+||+||||+|+||+|++|++||+|+||||+|
T Consensus       168 DGerILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~A  247 (582)
T KOG1257|consen  168 DGERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEA  247 (582)
T ss_pred             CCCceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCeeeeeecCCCchHHHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHH
Q 007782          268 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAE  347 (590)
Q Consensus       268 v~~~fGp~~lIqfEDf~~~~Af~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~  347 (590)
                      |+++|||++|||||||+++|||++|+|||++||||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+
T Consensus       248 v~~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~  327 (582)
T KOG1257|consen  248 VVQRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIAN  327 (582)
T ss_pred             HHHHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhhhcCcEEEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHH
Q 007782          348 LIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKE  427 (590)
Q Consensus       348 li~~~~~~~~G~s~eeA~~~i~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~e  427 (590)
                      ||+.+|+++ |+|+|||+++|||||++|||+++|+.+++++|++|||+++++++|+|||+.||||||||+|++||+||||
T Consensus       328 l~v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Ftee  406 (582)
T KOG1257|consen  328 LIVMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEE  406 (582)
T ss_pred             HHHHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHH
Confidence            999999996 9999999999999999999999998789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCC
Q 007782          428 VIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA  507 (590)
Q Consensus       428 vv~~Ma~~~erPIIFaLSNPt~~aEctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~s~a  507 (590)
                      |||+|+++|||||||||||||+++||||||||+||+|||||||||||+||+|+||+|+||||||+|+|||||||+++|++
T Consensus       407 vl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~  486 (582)
T KOG1257|consen  407 VLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGA  486 (582)
T ss_pred             HHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCC
Q 007782          508 IRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYR  587 (590)
Q Consensus       508 ~~Itd~M~~aAA~aLA~~v~~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~~m~~P~Y~  587 (590)
                      ++|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+
T Consensus       487 ~~i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~  566 (582)
T KOG1257|consen  487 RRIPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYR  566 (582)
T ss_pred             ccCCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 007782          588 NY  589 (590)
Q Consensus       588 ~~  589 (590)
                      ++
T Consensus       567 ~~  568 (582)
T KOG1257|consen  567 NS  568 (582)
T ss_pred             cc
Confidence            85

>PLN03129 NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>PRK13529 malate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00317 NADP-dependent malic enzyme; Provisional Back     alignment and domain information
>COG0281 SfcA Malic enzyme [Energy production and conversion] Back     alignment and domain information
>PRK12861 malic enzyme; Reviewed Back     alignment and domain information
>PRK12862 malic enzyme; Reviewed Back     alignment and domain information
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed Back     alignment and domain information
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 Back     alignment and domain information
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e Back     alignment and domain information
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme Back     alignment and domain information
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e Back     alignment and domain information
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 Back     alignment and domain information
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins Back     alignment and domain information
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Back     alignment and domain information
>TIGR01035 hemA glutamyl-tRNA reductase Back     alignment and domain information
>PRK09414 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PLN02477 glutamate dehydrogenase Back     alignment and domain information
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase Back     alignment and domain information
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) Back     alignment and domain information
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed Back     alignment and domain information
>TIGR00936 ahcY adenosylhomocysteinase Back     alignment and domain information
>PRK14031 glutamate dehydrogenase; Provisional Back     alignment and domain information
>PTZ00075 Adenosylhomocysteinase; Provisional Back     alignment and domain information
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase Back     alignment and domain information
>PLN02494 adenosylhomocysteinase Back     alignment and domain information
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases Back     alignment and domain information
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit Back     alignment and domain information
>PRK14030 glutamate dehydrogenase; Provisional Back     alignment and domain information
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Back     alignment and domain information
>PRK08306 dipicolinate synthase subunit A; Reviewed Back     alignment and domain information
>PLN00203 glutamyl-tRNA reductase Back     alignment and domain information
>PRK14982 acyl-ACP reductase; Provisional Back     alignment and domain information
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase Back     alignment and domain information
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional Back     alignment and domain information
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 Back     alignment and domain information
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PLN00106 malate dehydrogenase Back     alignment and domain information
>PRK13940 glutamyl-tRNA reductase; Provisional Back     alignment and domain information
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 Back     alignment and domain information
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK12549 shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase Back     alignment and domain information
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase Back     alignment and domain information
>TIGR00518 alaDH alanine dehydrogenase Back     alignment and domain information
>PRK00676 hemA glutamyl-tRNA reductase; Validated Back     alignment and domain information
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type Back     alignment and domain information
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related Back     alignment and domain information
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 Back     alignment and domain information
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 Back     alignment and domain information
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain Back     alignment and domain information
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK05086 malate dehydrogenase; Provisional Back     alignment and domain information
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] Back     alignment and domain information
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Back     alignment and domain information
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family Back     alignment and domain information
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase Back     alignment and domain information
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E Back     alignment and domain information
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases Back     alignment and domain information
>PRK08605 D-lactate dehydrogenase; Validated Back     alignment and domain information
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK08328 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00325 malate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 Back     alignment and domain information
>PRK12749 quinate/shikimate dehydrogenase; Reviewed Back     alignment and domain information
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase Back     alignment and domain information
>PLN02928 oxidoreductase family protein Back     alignment and domain information
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated Back     alignment and domain information
>PRK00066 ldh L-lactate dehydrogenase; Reviewed Back     alignment and domain information
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase Back     alignment and domain information
>PRK14027 quinate/shikimate dehydrogenase; Provisional Back     alignment and domain information
>PRK08223 hypothetical protein; Validated Back     alignment and domain information
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases Back     alignment and domain information
>PTZ00117 malate dehydrogenase; Provisional Back     alignment and domain information
>PRK15076 alpha-galactosidase; Provisional Back     alignment and domain information
>PRK12548 shikimate 5-dehydrogenase; Provisional Back     alignment and domain information
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated Back     alignment and domain information
>PTZ00082 L-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional Back     alignment and domain information
>PRK05600 thiamine biosynthesis protein ThiF; Validated Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases Back     alignment and domain information
>cd00704 MDH Malate dehydrogenase Back     alignment and domain information
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related Back     alignment and domain information
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated Back     alignment and domain information
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit Back     alignment and domain information
>TIGR02992 ectoine_eutC ectoine utilization protein EutC Back     alignment and domain information
>PRK06223 malate dehydrogenase; Reviewed Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate Back     alignment and domain information
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] Back     alignment and domain information
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases Back     alignment and domain information
>PRK14851 hypothetical protein; Provisional Back     alignment and domain information
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] Back     alignment and domain information
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>TIGR01915 npdG NADPH-dependent F420 reductase Back     alignment and domain information
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent Back     alignment and domain information
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases Back     alignment and domain information
>PRK08374 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK04346 tryptophan synthase subunit beta; Validated Back     alignment and domain information
>PRK07574 formate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PRK12550 shikimate 5-dehydrogenase; Reviewed Back     alignment and domain information
>PRK08644 thiamine biosynthesis protein ThiF; Provisional Back     alignment and domain information
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent Back     alignment and domain information
>PLN02306 hydroxypyruvate reductase Back     alignment and domain information
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 Back     alignment and domain information
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK06436 glycerate dehydrogenase; Provisional Back     alignment and domain information
>PRK13243 glyoxylate reductase; Reviewed Back     alignment and domain information
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB Back     alignment and domain information
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) Back     alignment and domain information
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated Back     alignment and domain information
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed Back     alignment and domain information
>TIGR01759 MalateDH-SF1 malate dehydrogenase Back     alignment and domain information
>PRK15116 sulfur acceptor protein CsdL; Provisional Back     alignment and domain information
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like Back     alignment and domain information
>PRK08410 2-hydroxyacid dehydrogenase; Provisional Back     alignment and domain information
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins Back     alignment and domain information
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) Back     alignment and domain information
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN Back     alignment and domain information
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>PRK08291 ectoine utilization protein EutC; Validated Back     alignment and domain information
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional Back     alignment and domain information
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent Back     alignment and domain information
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Back     alignment and domain information
>PRK12921 2-dehydropantoate 2-reductase; Provisional Back     alignment and domain information
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Back     alignment and domain information
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Back     alignment and domain information
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>cd01487 E1_ThiF_like E1_ThiF_like Back     alignment and domain information
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 Back     alignment and domain information
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>TIGR00507 aroE shikimate 5-dehydrogenase Back     alignment and domain information
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated Back     alignment and domain information
>PRK05442 malate dehydrogenase; Provisional Back     alignment and domain information
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases Back     alignment and domain information
>PRK06522 2-dehydropantoate 2-reductase; Reviewed Back     alignment and domain information
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E Back     alignment and domain information
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed Back     alignment and domain information
>PRK12480 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>TIGR01408 Ube1 ubiquitin-activating enzyme E1 Back     alignment and domain information
>PRK06487 glycerate dehydrogenase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
2aw5_A575 Crystal Structure Of A Human Malic Enzyme Length = 1e-154
1gz3_A554 Molecular Mechanism For The Regulation Of Human Mit 1e-148
1gq2_A555 Malic Enzyme From Pigeon Liver Length = 555 1e-148
1qr6_A584 Human Mitochondrial Nad(P)-Dependent Malic Enzyme L 1e-143
1efk_A584 Structure Of Human Malic Enzyme In Complex With Ket 1e-143
1do8_A564 Crystal Structure Of A Closed Form Of Human Mitocho 1e-143
1gz4_A551 Molecular Mechanism Of The Regulation Of Human Mito 1e-143
1llq_A605 Crystal Structure Of Malic Enzyme From Ascaris Suum 1e-138
3nv9_A487 Crystal Structure Of Entamoeba Histolytica Malic En 8e-17
2dvm_A439 Nad Complex Structure Of Ph1275 Protein From Pyroco 9e-10
2a9f_A398 Crystal Structure Of A Putative Malic Enzyme ((S)- 5e-09
1ww8_A439 Crystal Structure Of Malic Enzyme From Pyrococcus H 1e-08
2hae_A386 Crystal Structure Of A Putative Malic Enzyme (Malat 8e-07
1vl6_A388 Crystal Structure Of Nad-Dependent Malic Enzyme (Tm 3e-05
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 Back     alignment and structure 
Iteration: 1

 Score =  540 bits (1392), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 269/541 (49%), Positives = 355/541 (65%), Gaps = 4/541 (0%)
Query: 48  SVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQ 107
           S+  GY L R+P  NK LAFT +ER    + GLLPP+  SQ++Q  +++ +         
Sbjct: 22  SMQRGYLLTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFD 81
Query: 108 KYVAMMELE-RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK 166
           +Y+ +M+L+ RNE+LFY++L  ++E+ +P+VYTPTVG ACQ+Y  +FR+P+GL+I++ ++
Sbjct: 82  RYLLLMDLQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDR 141
Query: 167 GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLP 226
           G I  VL  WPE  I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLP
Sbjct: 142 GHIASVLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLP 201
Query: 227 ITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANH 286
           + +DVGT NE+LLKD  YIGLRQRR  G EY + LDEFM AV   YG   LIQFEDFAN 
Sbjct: 202 VILDVGTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANV 261
Query: 287 NAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIA 346
           NAF LL KY   +  FNDDIQ                    L++   LF GAGEA  GIA
Sbjct: 262 NAFRLLNKYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIA 321
Query: 347 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 406
            LI + + K+   P E+  KKI LVDSKGLIV  R  SL   K+ +AHEHE + NL   V
Sbjct: 322 HLIVMALEKE-GLPKEKAIKKIWLVDSKGLIVKGRA-SLTQEKEKFAHEHEEMKNLEAIV 379
Query: 407 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 466
           + IKPT LIG + +G  F++++++ MA+FNE+P+I ALSNPTS++EC+AE+ Y  +KGRA
Sbjct: 380 QEIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRA 439
Query: 467 IFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 525
           IFASGSPFDP    NG+   PGQ NN+Y+FPG  LG+V  G  ++ D++ L  +E +A+Q
Sbjct: 440 IFASGSPFDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQ 499
Query: 526 VTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPV 585
           V++++ E+G +YPP + IR              Y+   AT  P PQN      S MY+  
Sbjct: 500 VSDKHLEEGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYSTD 559
Query: 586 Y 586
           Y
Sbjct: 560 Y 560
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 Back     alignment and structure
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 Back     alignment and structure
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 Back     alignment and structure
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 Back     alignment and structure
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 Back     alignment and structure
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 Back     alignment and structure
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 Back     alignment and structure
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme Length = 487 Back     alignment and structure
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus Horikoshii Length = 439 Back     alignment and structure
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)- Malate:nad+ Oxidoreductase (Decarboxylating)) Length = 398 Back     alignment and structure
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus Horikoshii Ot3 Length = 439 Back     alignment and structure
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate Oxidoreductase) Length = 386 Back     alignment and structure
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2.61 A Resolution Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query590
1gq2_A555 Malic enzyme; oxidoreductase, pigeon liver, NADP-d 0.0
1pj3_A564 NAD-dependent malic enzyme, mitochondrial; oxidati 0.0
1o0s_A605 NAD-ME, NAD-dependent malic enzyme; oxidoreductase 0.0
3nv9_A487 Malic enzyme; rossmann fold, oxidoreductase; 2.25A 7e-41
2a9f_A398 Putative malic enzyme ((S)-malate:NAD+ oxidoreduct 9e-41
2dvm_A439 Malic enzyme, 439AA long hypothetical malate oxido 5e-32
1vl6_A388 Malate oxidoreductase; TM0542, NAD-dependent malic 1e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 Back     alignment and structure
 Score =  852 bits (2204), Expect = 0.0
 Identities = 279/541 (51%), Positives = 377/541 (69%), Gaps = 4/541 (0%)

Query: 52  GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
           GY +LRDP  NKG+AFT +ER    + GLLPP  + Q  Q   ++ +  +    L +Y+ 
Sbjct: 3   GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62

Query: 112 MMEL-ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 170
           +M L +RNE+LFYK+L  ++E  +P+VYTPTVG ACQ YG  FRRP+GL+I++ ++G I 
Sbjct: 63  LMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122

Query: 171 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVD 230
            +L++WPE  I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P  CLP+ +D
Sbjct: 123 TMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLD 182

Query: 231 VGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 290
           VGT+NE LLKD  YIGLR +R  GQ Y +LLDEFM AV   YG   LIQFEDFAN NAF 
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFR 242

Query: 291 LLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIA 350
           LL KY   +  FNDDIQGTASV +AG++AAL++    L++H  LF GAGEA  GIA LI 
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302

Query: 351 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 410
           + + K+     EE  K+I +VDSKGLIV  R   L   K+ +AHEH  + NL D VK IK
Sbjct: 303 MAMQKE-GVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEHCEMKNLEDIVKDIK 360

Query: 411 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 470
           PT+LIG + +G  FT+++++ MA+FN++P+I ALSNPTS++ECTAE+ Y +++GR IFAS
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420

Query: 471 GSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 529
           GSPFDP    +G+   PGQ NN+Y+FPG  LG++  G   + DD+ L  +E +A++V+EE
Sbjct: 421 GSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEE 480

Query: 530 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 589
           N ++G +YPP   I+++S  IA  +A +AY    A+  P+P++L     S +Y+  Y  +
Sbjct: 481 NLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 540

Query: 590 R 590
            
Sbjct: 541 V 541
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 Back     alignment and structure
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 Back     alignment and structure
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 Back     alignment and structure
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 Back     alignment and structure
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 Back     alignment and structure
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
1gq2_A555 Malic enzyme; oxidoreductase, pigeon liver, NADP-d 100.0
1pj3_A564 NAD-dependent malic enzyme, mitochondrial; oxidati 100.0
1o0s_A605 NAD-ME, NAD-dependent malic enzyme; oxidoreductase 100.0
3nv9_A487 Malic enzyme; rossmann fold, oxidoreductase; 2.25A 100.0
2a9f_A398 Putative malic enzyme ((S)-malate:NAD+ oxidoreduct 100.0
1vl6_A388 Malate oxidoreductase; TM0542, NAD-dependent malic 100.0
2dvm_A439 Malic enzyme, 439AA long hypothetical malate oxido 100.0
3gvp_A435 Adenosylhomocysteinase 3; protein CO-factor comple 98.89
3h9u_A436 Adenosylhomocysteinase; NAD CO-factor complex, str 98.84
1x13_A401 NAD(P) transhydrogenase subunit alpha; NAD(H)-bind 98.23
3n58_A464 Adenosylhomocysteinase; ssgcid, hydrolase, structu 97.87
3ond_A488 Adenosylhomocysteinase; plant protein, enzyme-subs 97.79
1l7d_A384 Nicotinamide nucleotide transhydrogenase, subunit 97.21
4dio_A405 NAD(P) transhydrogenase subunit alpha PART 1; stru 97.0
3p2y_A381 Alanine dehydrogenase/pyridine nucleotide transhy; 96.86
3k92_A424 NAD-GDH, NAD-specific glutamate dehydrogenase; ROC 96.67
3d4o_A293 Dipicolinate synthase subunit A; NP_243269.1, stru 96.28
3aoe_E419 Glutamate dehydrogenase; rossmann fold, NADH, oxid 96.27
4fcc_A450 Glutamate dehydrogenase; protein complex, rossmann 96.23
1a4i_A301 Methylenetetrahydrofolate dehydrogenase / methenyl 96.01
3r3j_A456 Glutamate dehydrogenase; rossman fold, oxidoreduct 95.9
3jyo_A283 Quinate/shikimate dehydrogenase; enzyme-cofactor c 95.86
3l07_A285 Bifunctional protein fold; structural genomics, ID 95.85
3p2o_A285 Bifunctional protein fold; structural genomics, ce 95.52
3ngx_A276 Bifunctional protein fold; methylenetetrahydrofola 95.45
3aog_A440 Glutamate dehydrogenase; NAD(H), oxidoreducta; HET 95.41
1b0a_A288 Protein (fold bifunctional protein); folate, dehyd 95.34
2yfq_A421 Padgh, NAD-GDH, NAD-specific glutamate dehydrogena 95.32
4a5o_A286 Bifunctional protein fold; oxidoreductase, hydrola 95.25
3tri_A280 Pyrroline-5-carboxylate reductase; amino acid bios 95.23
1edz_A320 5,10-methylenetetrahydrofolate dehydrogenase; nucl 95.19
3don_A277 Shikimate dehydrogenase; alpha-beta structure, ros 95.13
4a26_A300 Putative C-1-tetrahydrofolate synthase, cytoplasm; 94.99
2bma_A470 Glutamate dehydrogenase (NADP+); malaria, drug des 94.99
3oj0_A144 Glutr, glutamyl-tRNA reductase; structural genomic 94.93
1v9l_A421 Glutamate dehydrogenase; protein-NAD complex, oxid 94.85
4e12_A283 Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 94.77
1gpj_A404 Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro 94.75
1c1d_A355 L-phenylalanine dehydrogenase; amino acid dehydrog 94.66
3t4e_A312 Quinate/shikimate dehydrogenase; structural genomi 94.65
2tmg_A415 Protein (glutamate dehydrogenase); metabolic role, 94.6
1v8b_A479 Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 94.6
2egg_A297 AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff 94.54
2rir_A300 Dipicolinate synthase, A chain; structural genomic 94.3
1bgv_A449 Glutamate dehydrogenase; oxidoreductase; HET: GLU; 94.09
3u62_A253 Shikimate dehydrogenase; shikimate pathway, oxidor 94.05
2c2x_A281 Methylenetetrahydrofolate dehydrogenase- methenylt 94.0
1pjc_A361 Protein (L-alanine dehydrogenase); oxidoreductase, 93.79
1leh_A364 Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi 93.77
2dpo_A319 L-gulonate 3-dehydrogenase; structural genomics, N 93.58
1mld_A314 Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D 93.29
1hyh_A309 L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 93.27
3u95_A 477 Glycoside hydrolase, family 4; hydrolysis, cytosol 93.18
3fbt_A282 Chorismate mutase and shikimate 5-dehydrogenase fu 93.09
3tnl_A315 Shikimate dehydrogenase; structural genomics, cent 93.03
2hk9_A275 Shikimate dehydrogenase; shikimate pathway, drug d 93.02
3o8q_A281 Shikimate 5-dehydrogenase I alpha; structural geno 92.99
2ewd_A317 Lactate dehydrogenase,; protein-substrate_cofactor 92.93
3d64_A494 Adenosylhomocysteinase; structural genomics, ssgci 92.92
1pzg_A331 LDH, lactate dehydrogenase; apicomplexa, APAD, tet 92.87
2o4c_A380 Erythronate-4-phosphate dehydrogenase; erythronate 92.71
3pwz_A272 Shikimate dehydrogenase 3; alpha-beta, oxidoreduct 92.62
3mw9_A501 GDH 1, glutamate dehydrogenase 1; allostery, inhib 92.47
3tum_A269 Shikimate dehydrogenase family protein; rossmann-f 92.36
2v6b_A304 L-LDH, L-lactate dehydrogenase; oxidoreductase, ra 92.04
3dtt_A245 NADP oxidoreductase; structural genomics, joint ce 92.02
1gtm_A419 Glutamate dehydrogenase; oxidoreductase, NAD, NADP 91.99
2eez_A369 Alanine dehydrogenase; TTHA0216, structural genomi 91.94
2i6t_A303 Ubiquitin-conjugating enzyme E2-like isoform A; L- 91.8
2d5c_A263 AROE, shikimate 5-dehydrogenase; substrate, dimer, 91.78
3fef_A 450 Putative glucosidase LPLD; gulosidase, structural 91.73
1o6z_A303 MDH, malate dehydrogenase; halophilic, ION-binding 91.68
3oet_A381 Erythronate-4-phosphate dehydrogenase; structural 91.62
1x7d_A350 Ornithine cyclodeaminase; binds NAD+, binds L-orni 91.59
2ekl_A313 D-3-phosphoglycerate dehydrogenase; structural gen 91.52
3ce6_A494 Adenosylhomocysteinase; protein-substrate complex, 91.41
1b8p_A329 Protein (malate dehydrogenase); oxidoreductase; 1. 91.25
1obb_A 480 Maltase, alpha-glucosidase; glycosidase, sulfinic 91.19
1a5z_A319 L-lactate dehydrogenase; oxidoreductase, glycolysi 91.15
1nyt_A271 Shikimate 5-dehydrogenase; alpha/beta domains, WID 91.03
1zud_1251 Adenylyltransferase THIF; thiamin, thiazole, prote 91.01
2g1u_A155 Hypothetical protein TM1088A; structural genomics, 90.93
1ldn_A316 L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA 90.84
2hjr_A328 Malate dehydrogenase; malaria, structural genomics 90.79
2gcg_A330 Glyoxylate reductase/hydroxypyruvate reductase; NA 90.71
2zqz_A326 L-LDH, L-lactate dehydrogenase; oxidoreductase, ro 90.59
1p77_A272 Shikimate 5-dehydrogenase; NADPH, oxidoreductase; 90.57
3hdj_A313 Probable ornithine cyclodeaminase; APC62486, borde 90.55
1t2d_A322 LDH-P, L-lactate dehydrogenase; ternary complex, o 90.54
1ez4_A318 Lactate dehydrogenase; rossmann fold, oxidoreducta 90.33
2dbq_A334 Glyoxylate reductase; D-3-phosphoglycerate dehydro 90.26
1lu9_A287 Methylene tetrahydromethanopterin dehydrogenase; a 89.79
1y6j_A318 L-lactate dehydrogenase; southeast collaboratory f 89.72
2rcy_A262 Pyrroline carboxylate reductase; malaria, structur 89.68
2hmt_A144 YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane 89.48
1guz_A310 Malate dehydrogenase; oxidoreductase, tricarboxyli 89.46
3vku_A326 L-LDH, L-lactate dehydrogenase; rossmann fold, NAD 89.41
3d0o_A317 L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly 89.41
3d1l_A266 Putative NADP oxidoreductase BF3122; structural ge 89.18
1s6y_A 450 6-phospho-beta-glucosidase; hydrolase, structural 89.08
3h5n_A353 MCCB protein; ubiquitin-activating enzyme, microci 88.99
2vhw_A377 Alanine dehydrogenase; NAD, secreted, oxidoreducta 88.76
3ba1_A333 HPPR, hydroxyphenylpyruvate reductase; two domain 88.46
1omo_A322 Alanine dehydrogenase; two-domain, beta-sandwich-d 88.29
4g2n_A345 D-isomer specific 2-hydroxyacid dehydrogenase, Na; 88.29
1u8x_X 472 Maltose-6'-phosphate glucosidase; structural genom 88.21
3jtm_A351 Formate dehydrogenase, mitochondrial; mitochondrio 88.19
1oju_A294 MDH, malate dehydrogenase; hyperthermophilic, oxid 88.1
3k5p_A416 D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, 88.0
1z82_A335 Glycerol-3-phosphate dehydrogenase; TM0378, struct 87.98
3phh_A269 Shikimate dehydrogenase; shikimate pathway, helico 87.96
2i99_A312 MU-crystallin homolog; thyroid hormine binding pro 87.93
1lld_A319 L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N 87.9
1smk_A326 Malate dehydrogenase, glyoxysomal; tricarboxylic c 87.88
3h8v_A292 Ubiquitin-like modifier-activating enzyme 5; rossm 87.76
2xxj_A310 L-LDH, L-lactate dehydrogenase; oxidoreductase, hy 87.62
1wwk_A307 Phosphoglycerate dehydrogenase; riken structural g 87.57
2zyd_A 480 6-phosphogluconate dehydrogenase, decarboxylating; 87.4
3gvi_A324 Malate dehydrogenase; NAD, oxidoreductase, tricarb 87.28
1xdw_A331 NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas 87.24
1nvt_A287 Shikimate 5'-dehydrogenase; structural genomics, P 87.24
1up7_A 417 6-phospho-beta-glucosidase; hydrolase, family4 hyd 87.21
1ur5_A309 Malate dehydrogenase; oxidoreductase, tricarboxyli 87.19
3i83_A320 2-dehydropantoate 2-reductase; structural genomics 87.16
2j6i_A364 Formate dehydrogenase; oxidoreductase, D-specific- 87.0
4e21_A358 6-phosphogluconate dehydrogenase (decarboxylating; 86.99
3rui_A340 Ubiquitin-like modifier-activating enzyme ATG7; au 86.94
4huj_A220 Uncharacterized protein; PSI-biology, nysgrc, stru 86.87
3gt0_A247 Pyrroline-5-carboxylate reductase; structural geno 86.82
1sc6_A404 PGDH, D-3-phosphoglycerate dehydrogenase; alloster 86.74
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 86.66
1qp8_A303 Formate dehydrogenase; oxidoreductase; HET: NDP; 2 86.57
1npy_A271 Hypothetical shikimate 5-dehydrogenase-like protei 86.52
1txg_A335 Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid 86.5
3nep_X314 Malate dehydrogenase; halophIle, molecular adpatat 86.45
2cuk_A311 Glycerate dehydrogenase/glyoxylate reductase; stru 86.35
2d4a_B308 Malate dehydrogenase; archaea, hyperthermophIle, o 86.35
3p7m_A321 Malate dehydrogenase; putative dehydrogenase, enzy 86.16
2d0i_A333 Dehydrogenase; structural genomics, NPPSFA, nation 85.97
4dgs_A340 Dehydrogenase; structural genomics, PSI-biology, N 85.91
3ado_A319 Lambda-crystallin; L-gulonate 3-dehydrogenase, str 85.75
4gsl_A615 Ubiquitin-like modifier-activating enzyme ATG7; ub 85.73
4hy3_A365 Phosphoglycerate oxidoreductase; PSI-biology, stru 85.66
3tl2_A315 Malate dehydrogenase; center for structural genomi 85.66
2p4q_A 497 6-phosphogluconate dehydrogenase, decarboxylating; 85.57
1jw9_B249 Molybdopterin biosynthesis MOEB protein; MOEB: mod 85.48
2raf_A209 Putative dinucleotide-binding oxidoreductase; NP_7 85.45
1hdo_A206 Biliverdin IX beta reductase; foetal metabolism, H 84.93
3pqe_A326 L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas 84.91
1hye_A313 L-lactate/malate dehydrogenase; nucleotide binding 84.42
2yq5_A343 D-isomer specific 2-hydroxyacid dehydrogenase; oxi 84.32
1ks9_A291 KPA reductase;, 2-dehydropantoate 2-reductase; PAN 84.16
3vh1_A598 Ubiquitin-like modifier-activating enzyme ATG7; au 84.12
3k6j_A 460 Protein F01G10.3, confirmed by transcript evidenc; 84.09
1f0y_A302 HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive 83.99
3lk7_A 451 UDP-N-acetylmuramoylalanine--D-glutamate ligase; a 83.91
3k96_A356 Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA 83.88
1j4a_A333 D-LDH, D-lactate dehydrogenase; NAD-dependent dehy 83.75
2w2k_A348 D-mandelate dehydrogenase; 2-hydroxyacid dehydroge 83.67
4ina_A 405 Saccharopine dehydrogenase; structural genomics, P 83.59
3hg7_A324 D-isomer specific 2-hydroxyacid dehydrogenase FAM 83.39
1y7t_A327 Malate dehydrogenase; NAD-dependent-MDH-NADPH comp 83.15
3evt_A324 Phosphoglycerate dehydrogenase; structural genomic 82.64
2pi1_A334 D-lactate dehydrogenase; oxidoreductase, D-LDH, NA 82.64
1dxy_A333 D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc 82.43
1pgj_A 478 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o 82.35
1x0v_A354 GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase 82.2
2ew2_A316 2-dehydropantoate 2-reductase, putative; alpha-str 82.1
2vns_A215 Metalloreductase steap3; metal-binding, transmembr 81.94
3gvx_A290 Glycerate dehydrogenase related protein; NYSGXRC, 81.91
2nac_A393 NAD-dependent formate dehydrogenase; oxidoreductas 81.86
3b1f_A290 Putative prephenate dehydrogenase; enzyme, 4-hydro 81.81
1y8q_A346 Ubiquitin-like 1 activating enzyme E1A; SUMO, hete 81.51
2iz1_A 474 6-phosphogluconate dehydrogenase, decarboxylating; 81.18
3pp8_A315 Glyoxylate/hydroxypyruvate reductase A; structural 81.15
1jay_A212 Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma 80.8
1hyu_A521 AHPF, alkyl hydroperoxide reductase subunit F; thi 80.8
3abi_A 365 Putative uncharacterized protein PH1688; L-lysine 80.57
1yj8_A375 Glycerol-3-phosphate dehydrogenase; SGPP, structur 80.46
3e8x_A236 Putative NAD-dependent epimerase/dehydratase; stru 80.28
2uyy_A316 N-PAC protein; long-chain dehydrogenase, cytokine; 80.06
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Back     alignment and structure
Probab=100.00  E-value=3.1e-207  Score=1664.85  Aligned_cols=539  Identities=52%  Similarity=0.928  Sum_probs=531.3

Q ss_pred             ccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhh-cccccchhhhccc
Q 007782           50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLLID  128 (590)
Q Consensus        50 ~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L-~~Ne~LFy~ll~~  128 (590)
                      ++|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|++|++++++|+||+||++| ++||+|||||+++
T Consensus         1 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~   80 (555)
T 1gq2_A            1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS   80 (555)
T ss_dssp             CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCcceeeehhhHhh
Confidence            379999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             CccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccchhh
Q 007782          129 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG  208 (590)
Q Consensus       129 ~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG  208 (590)
                      |++|+|||+||||||++|++||+|||+|+|+|||++|+|+++++++|||.++|+|||||||||||||||+|++|||||||
T Consensus        81 ~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvG  160 (555)
T 1gq2_A           81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG  160 (555)
T ss_dssp             THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred             hHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchH
Q 007782          209 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA  288 (590)
Q Consensus       209 Kl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~A  288 (590)
                      |++|||+||||||++|||||||+|||||+||+||+||||||+|++|++|++|+||||++|+++|||+++||||||+++||
T Consensus       161 Kl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~a  240 (555)
T 1gq2_A          161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA  240 (555)
T ss_dssp             HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred             HHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCceeccCCCchHHHHHHHHHHHHHHhCCCCccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcCcE
Q 007782          289 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI  368 (590)
Q Consensus       289 f~lL~ryr~~~~~FNDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~li~~~~~~~~G~s~eeA~~~i  368 (590)
                      |+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+|||+++|
T Consensus       241 f~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~-G~~~eeA~~~i  319 (555)
T 1gq2_A          241 FRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAIKRI  319 (555)
T ss_dssp             HHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHH-TCCHHHHHTTE
T ss_pred             HHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHc-CCChHHHhCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999985 99999999999


Q ss_pred             EEEcCCCcccCCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007782          369 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT  448 (590)
Q Consensus       369 ~lvD~~GLv~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt  448 (590)
                      ||||++|||+++|. +|+++|++||++.++.++|+|||+.+|||||||+|+++|+||||||++|+++|+|||||||||||
T Consensus       320 ~~~D~~Gli~~~r~-~l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt  398 (555)
T 1gq2_A          320 WMVDSKGLIVKGRA-SLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPT  398 (555)
T ss_dssp             EEEETTEECBTTCS-SCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSG
T ss_pred             EEEECCCeeeCCCC-CchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            99999999999996 49999999999877778999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHhcccCCcEEEecCCCCCccee-CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007782          449 SQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT  527 (590)
Q Consensus       449 ~~aEctpedA~~wt~G~aifAsGSPF~pv~~-~G~~~~p~Q~NN~yiFPGiglG~l~s~a~~Itd~M~~aAA~aLA~~v~  527 (590)
                      +++||+||||++||+|+|||||||||+||+| +||+++|||+||+|+|||||||+++++|++|||+|+++||+|||++++
T Consensus       399 ~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~liFPGi~~Gal~~~A~~Itd~M~~aAA~alA~~v~  478 (555)
T 1gq2_A          399 SKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVS  478 (555)
T ss_dssp             GGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCC
T ss_pred             CccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEeccccccceeeccchhhhhHhcCCeECCHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007782          528 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR  590 (590)
Q Consensus       528 ~~~~~~g~l~P~~~~ir~vs~~VA~aVa~~A~~~G~a~~~~~~~dl~~~i~~~m~~P~Y~~~~  590 (590)
                      ++++..+.|||++++||+||.+||.||+++|+++|+|+..++|+|+.+|++++||+|+|++|+
T Consensus       479 ~~~~~~~~i~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~~~~P~Y~~~~  541 (555)
T 1gq2_A          479 EENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFV  541 (555)
T ss_dssp             HHHHHHTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHTTSCCCSCCCCS
T ss_pred             cccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhccCCCCCCcc
Confidence            999999999999999999999999999999999999988788899999999999999999874
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Back     alignment and structure
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Back     alignment and structure
>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Back     alignment and structure
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Back     alignment and structure
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Back     alignment and structure
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Back     alignment and structure
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Back     alignment and structure
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Back     alignment and structure
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Back     alignment and structure
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Back     alignment and structure
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Back     alignment and structure
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* Back     alignment and structure
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} Back     alignment and structure
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} Back     alignment and structure
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Back     alignment and structure
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Back     alignment and structure
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Back     alignment and structure
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E Back     alignment and structure
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Back     alignment and structure
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} Back     alignment and structure
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Back     alignment and structure
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Back     alignment and structure
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Back     alignment and structure
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Back     alignment and structure
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Back     alignment and structure
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Back     alignment and structure
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Back     alignment and structure
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} Back     alignment and structure
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Back     alignment and structure
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Back     alignment and structure
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Back     alignment and structure
>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} Back     alignment and structure
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Back     alignment and structure
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* Back     alignment and structure
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Back     alignment and structure
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Back     alignment and structure
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Back     alignment and structure
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A Back     alignment and structure
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Back     alignment and structure
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Back     alignment and structure
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Back     alignment and structure
>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A Back     alignment and structure
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Back     alignment and structure
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Back     alignment and structure
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A Back     alignment and structure
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Back     alignment and structure
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Back     alignment and structure
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* Back     alignment and structure
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Back     alignment and structure
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Back     alignment and structure
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Back     alignment and structure
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Back     alignment and structure
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Back     alignment and structure
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Back     alignment and structure
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Back     alignment and structure
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Back     alignment and structure
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Back     alignment and structure
>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Back     alignment and structure
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Back     alignment and structure
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Back     alignment and structure
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A Back     alignment and structure
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} Back     alignment and structure
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Back     alignment and structure
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Back     alignment and structure
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Back     alignment and structure
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Back     alignment and structure
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Back     alignment and structure
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* Back     alignment and structure
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Back     alignment and structure
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Back     alignment and structure
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Back     alignment and structure
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Back     alignment and structure
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Back     alignment and structure
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Back     alignment and structure
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Back     alignment and structure
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Back     alignment and structure
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Back     alignment and structure
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} Back     alignment and structure
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Back     alignment and structure
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Back     alignment and structure
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Back     alignment and structure
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Back     alignment and structure
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} Back     alignment and structure
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Back     alignment and structure
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Back     alignment and structure
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* Back     alignment and structure
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Back     alignment and structure
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Back     alignment and structure
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Back     alignment and structure
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* Back     alignment and structure
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Back     alignment and structure
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A Back     alignment and structure
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Back     alignment and structure
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Back     alignment and structure
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Back     alignment and structure
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* Back     alignment and structure
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Back     alignment and structure
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} Back     alignment and structure
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* Back     alignment and structure
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} Back     alignment and structure
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Back     alignment and structure
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Back     alignment and structure
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Back     alignment and structure
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Back     alignment and structure
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Back     alignment and structure
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Back     alignment and structure
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Back     alignment and structure
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Back     alignment and structure
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Back     alignment and structure
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Back     alignment and structure
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} Back     alignment and structure
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Back     alignment and structure
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Back     alignment and structure
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Back     alignment and structure
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} Back     alignment and structure
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} Back     alignment and structure
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Back     alignment and structure
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Back     alignment and structure
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Back     alignment and structure
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Back     alignment and structure
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Back     alignment and structure
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Back     alignment and structure
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Back     alignment and structure
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Back     alignment and structure
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* Back     alignment and structure
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A Back     alignment and structure
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} Back     alignment and structure
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Back     alignment and structure
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Back     alignment and structure
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Back     alignment and structure
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Back     alignment and structure
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Back     alignment and structure
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* Back     alignment and structure
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* Back     alignment and structure
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Back     alignment and structure
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Back     alignment and structure
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Back     alignment and structure
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Back     alignment and structure
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} Back     alignment and structure
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Back     alignment and structure
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Back     alignment and structure
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} Back     alignment and structure
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Back     alignment and structure
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Back     alignment and structure
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Back     alignment and structure
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Back     alignment and structure
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Back     alignment and structure
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} Back     alignment and structure
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Back     alignment and structure
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Back     alignment and structure
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Back     alignment and structure
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A Back     alignment and structure
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Back     alignment and structure
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Back     alignment and structure
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Back     alignment and structure
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Back     alignment and structure
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Back     alignment and structure
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} Back     alignment and structure
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} Back     alignment and structure
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Back     alignment and structure
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 590
d1o0sa2294 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent 1e-137
d1gq2a2257 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent 1e-135
d1pj3a2259 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent 1e-132
d1pj3a1294 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent 1e-103
d1o0sa1308 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent 1e-102
d1gq2a1298 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent 2e-95
d1vl6a1222 c.2.1.7 (A:155-376) Malate oxidoreductase (malic e 1e-47
d1vl6a2154 c.58.1.3 (A:1-154) Malate oxidoreductase (malic en 3e-06
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

 Score =  399 bits (1028), Expect = e-137
 Identities = 147/289 (50%), Positives = 196/289 (67%), Gaps = 11/289 (3%)

Query: 28  EDVYGEDRATEDQ-------LVTP-WTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRG 79
           EDVY  +    D+       L  P           LL++PR NKG+ F+  ER    L G
Sbjct: 6   EDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHG 65

Query: 80  LLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLLIDNVEELLPVVY 138
           LLPPA ++Q+ Q  +++  +R+    L +Y+ +  L +RNE+LFY+++ D+V+EL+P+VY
Sbjct: 66  LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVY 125

Query: 139 TPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLG 196
           TPTVG ACQ +G I+R+P+GLYI++ +    KI ++L NW E  ++ IVVTDGERILGLG
Sbjct: 126 TPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLG 185

Query: 197 DLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQE 256
           DLG  G+GIPVGKLALY ALGG++P  CLP+ +DVGTNN  LL D FYIGLR +R  G++
Sbjct: 186 DLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKD 245

Query: 257 YAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD 305
           Y  LLD FM A  + YG+K LIQFEDFAN NAF LL KY   + +FNDD
Sbjct: 246 YDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 Back     information, alignment and structure
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 Back     information, alignment and structure
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 Back     information, alignment and structure
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 Back     information, alignment and structure
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 Back     information, alignment and structure
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 Back     information, alignment and structure
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query590
d1gq2a2257 Mitochondrial NAD(P)-dependent malic enzyme {Domes 100.0
d1pj3a2259 Mitochondrial NAD(P)-dependent malic enzyme {Human 100.0
d1o0sa2294 Mitochondrial NAD(P)-dependent malic enzyme {Pig r 100.0
d1gq2a1298 Mitochondrial NAD(P)-dependent malic enzyme {Domes 100.0
d1o0sa1308 Mitochondrial NAD(P)-dependent malic enzyme {Pig r 100.0
d1pj3a1294 Mitochondrial NAD(P)-dependent malic enzyme {Human 100.0
d1vl6a1222 Malate oxidoreductase (malic enzyme) {Thermotoga m 100.0
d1vl6a2154 Malate oxidoreductase (malic enzyme) {Thermotoga m 99.97
d1gpja2159 Glutamyl tRNA-reductase middle domain {Archaeon Me 98.23
d1vi2a1182 Putative shikimate dehydrogenase YdiB {Escherichia 96.86
d1pjca1168 L-alanine dehydrogenase {Phormidium lapideum [TaxI 96.28
d1v9la1242 Glutamate dehydrogenase {Pyrobaculum islandicum [T 95.8
d1b26a1234 Glutamate dehydrogenase {Thermotoga maritima [TaxI 95.69
d1c1da1201 Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ 95.56
d1nyta1170 Shikimate 5-dehydrogenase AroE {Escherichia coli [ 95.33
d1luaa1191 Methylene-tetrahydromethanopterin dehydrogenase {M 95.27
d1li4a1163 S-adenosylhomocystein hydrolase {Human (Homo sapie 95.18
d1obba1171 Alpha-glucosidase AglA {Thermotoga maritima [TaxId 95.09
d1v8ba1163 S-adenosylhomocystein hydrolase {Plasmodium falcip 94.64
d1pzga1154 Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 94.55
d1ez4a1146 Lactate dehydrogenase {Lactobacillus pentosus [Tax 94.45
d1vjta1193 Putative alpha-glucosidase TM0752 {Thermotoga mari 94.41
d1p77a1171 Shikimate 5-dehydrogenase AroE {Haemophilus influe 94.28
d1gtma1239 Glutamate dehydrogenase {Archaeon Pyrococcus furio 94.21
d1mlda1144 Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 94.21
d1sc6a1188 Phosphoglycerate dehydrogenase {Escherichia coli [ 94.18
d1s6ya1169 6-phospho-beta-glucosidase {Bacillus stearothermop 94.13
d1l7da1183 Nicotinamide nucleotide transhydrogenase dI compon 93.95
d1up7a1162 6-phospho-beta-glucosidase {Thermotoga maritima [T 93.87
d1hyha1146 L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La 93.82
d1pl8a2171 Ketose reductase (sorbitol dehydrogenase) {Human ( 93.7
d1bgva1255 Glutamate dehydrogenase {Clostridium symbiosum [Ta 93.38
d1npya1167 Shikimate 5-dehydrogenase-like protein HI0607 {Hae 93.17
d1bg6a2184 N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A 92.97
d1y6ja1142 Lactate dehydrogenase {Clostridium thermocellum [T 92.94
d1f0ya2192 Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum 92.92
d1guza1142 Malate dehydrogenase {Chlorobium vibrioforme [TaxI 92.9
d1u8xx1167 Maltose-6'-phosphate glucosidase GlvA {Bacillus su 92.9
d2cmda1145 Malate dehydrogenase {Escherichia coli [TaxId: 562 92.59
d1j4aa1197 D-lactate dehydrogenase {Lactobacillus helveticus 92.58
d2jfga193 UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 92.25
d1nvta1177 Shikimate 5-dehydrogenase AroE {Archaeon Methanoco 92.19
d1a5za1140 Lactate dehydrogenase {Thermotoga maritima [TaxId: 92.16
d1mx3a1193 Transcription corepressor CtbP {Human (Homo sapien 91.92
d1leha1230 Leucine dehydrogenase {Bacillus sphaericus [TaxId: 91.75
d2naca1188 Formate dehydrogenase {Pseudomonas sp., strain 101 91.61
d2ldxa1159 Lactate dehydrogenase {Mouse (Mus musculus) [TaxId 91.44
d1llda1143 Lactate dehydrogenase {Bifidobacterium longum, str 91.37
d1dxya1199 D-2-hydroxyisocaproate dehydrogenase {Lactobacillu 91.27
d1gdha1191 D-glycerate dehydrogenase {Hyphomicrobium methylov 91.27
d1f8fa2174 Benzyl alcohol dehydrogenase {Acinetobacter calcoa 90.85
d1t2da1150 Lactate dehydrogenase {Malaria parasite (Plasmodiu 90.8
d1ldna1148 Lactate dehydrogenase {Bacillus stearothermophilus 90.76
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 90.35
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 90.34
d1o6za1142 Malate dehydrogenase {Archaeon Haloarcula marismor 89.79
d1hwxa1293 Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 89.74
d1jw9b_247 Molybdenum cofactor biosynthesis protein MoeB {Esc 89.66
d1ojua1142 Malate dehydrogenase {Archaeon Archaeoglobus fulgi 89.56
d1jqba2174 Bacterial secondary alcohol dehydrogenase {Clostri 89.15
d2f1ka2165 Prephenate dehydrogenase TyrA {Synechocystis sp. p 89.0
d1ks9a2167 Ketopantoate reductase PanE {Escherichia coli [Tax 88.89
d1c0pa1268 D-aminoacid oxidase, N-terminal domain {Rhodotorul 88.32
d1wdka3186 Fatty oxidation complex alpha subunit, middle doma 88.25
d1fcda1186 Flavocytochrome c sulfide dehydrogenase, FCSD, fla 88.24
d1qp8a1181 Putative formate dehydrogenase {Archaeon Pyrobacul 87.98
d1gtea4196 Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su 86.83
d1e3ja2170 Ketose reductase (sorbitol dehydrogenase) {Silverl 86.8
d1p0fa2174 Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 86.69
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 86.47
d1i0za1160 Lactate dehydrogenase {Human (Homo sapiens), heart 86.09
d1hdoa_205 Biliverdin IX beta reductase {Human (Homo sapiens) 85.84
d1seza1 373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 85.59
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 84.79
d1b0aa1166 Methylenetetrahydrofolate dehydrogenase/cyclohydro 84.77
d2bi7a1314 UDP-galactopyranose mutase, N-terminal domain {Kle 84.06
d1vj0a2182 Hypothetical protein TM0436 {Thermotoga maritima [ 83.95
d1txga2180 Glycerol-3- phosphate dehydrogenase {Archaeoglobus 83.66
d1d1ta2176 Alcohol dehydrogenase {Human (Homo sapiens), diffe 83.46
d1uxja1142 Malate dehydrogenase {Chloroflexus aurantiacus [Ta 83.17
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 82.29
d2pv7a2152 Prephenate dehydrogenase TyrA {Haemophilus influen 81.91
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 81.58
d1ygya1184 Phosphoglycerate dehydrogenase {Mycobacterium tube 81.39
d1e5qa1182 Saccharopine reductase {Rice blast fungus (Magnapo 81.01
d3c96a1288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 81.0
d2dw4a2 449 Lysine-specific histone demethylase 1, LSD1 {Human 80.99
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 80.45
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Malic enzyme N-domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=100.00  E-value=1.5e-116  Score=876.49  Aligned_cols=256  Identities=57%  Similarity=1.048  Sum_probs=254.7

Q ss_pred             ccccccccCcCCccCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHHhcCCCchhHHHHhhhh-cccccchhhhccc
Q 007782           50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMEL-ERNERLFYKLLID  128 (590)
Q Consensus        50 ~~G~~ll~~p~~NKGtaFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L-~~Ne~LFy~ll~~  128 (590)
                      ++|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++||+.+++++++||+||+||++| ++||+|||++|++
T Consensus         1 krG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~~~l~Ky~yL~~L~~~Ne~LFY~ll~~   80 (257)
T d1gq2a2           1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS   80 (257)
T ss_dssp             CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             CChHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhChHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999999999 9999999999999


Q ss_pred             CccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceeecCCCCCCCcccchhh
Q 007782          129 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG  208 (590)
Q Consensus       129 ~~ee~lPivYTPtVG~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG  208 (590)
                      |++|+||||||||||+|||+||++||+|+|||||++|+|+|+++|+|||.++|++||||||||||||||||+||||||+|
T Consensus        81 ~~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i~~il~nwp~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~g  160 (257)
T d1gq2a2          81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG  160 (257)
T ss_dssp             THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred             HHHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHHHHHHHhCCCCCeeEEEEecCceeeecCCcCcCccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCCCceeeEEeecCCCchhcccCcccccccccCCChhhhHHHHHHHHHHHHHhcCCCeeeeeecCCCchH
Q 007782          209 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA  288 (590)
Q Consensus       209 Kl~LYta~gGI~P~~~LPI~LDvGTnNe~LL~Dp~YlG~r~~R~~g~~Y~~~idefv~av~~~fGp~~lIqfEDf~~~~A  288 (590)
                      |++|||+||||||++|||||||||||||+||+||+|+|+||+|++|++|++||||||+||+++|||+++||||||+++||
T Consensus       161 Kl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p~~~~i~~EDf~~~na  240 (257)
T d1gq2a2         161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA  240 (257)
T ss_dssp             HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred             HHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhCCCCCEEehhhcCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHcCCCceeccC
Q 007782          289 FELLAKYGTTHLVFNDD  305 (590)
Q Consensus       289 f~lL~ryr~~~~~FNDD  305 (590)
                      |++|+|||+++||||||
T Consensus       241 ~~~L~~yr~~~~~FNDD  257 (257)
T d1gq2a2         241 FRLLHKYRNKYCTFNDD  257 (257)
T ss_dssp             HHHHHHHTTTSEEEETT
T ss_pred             HHHHHHHccCCCccCCC
Confidence            99999999999999999
>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Back     information, alignment and structure
>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Back     information, alignment and structure
>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Back     information, alignment and structure
>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Back     information, alignment and structure
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Back     information, alignment and structure
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Back     information, alignment and structure
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Back     information, alignment and structure
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Back     information, alignment and structure
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Back     information, alignment and structure
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Back     information, alignment and structure
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Back     information, alignment and structure
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Back     information, alignment and structure
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Back     information, alignment and structure
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Back     information, alignment and structure
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Back     information, alignment and structure
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Back     information, alignment and structure
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Back     information, alignment and structure
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Back     information, alignment and structure
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Back     information, alignment and structure
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Back     information, alignment and structure
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Back     information, alignment and structure
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Back     information, alignment and structure
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure